Citrus Sinensis ID: 010575
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMA1 | 530 | Pentatricopeptide repeat- | yes | no | 0.956 | 0.915 | 0.552 | 1e-161 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.923 | 0.876 | 0.422 | 1e-119 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.932 | 0.762 | 0.420 | 1e-114 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.960 | 0.795 | 0.391 | 1e-110 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.944 | 0.880 | 0.391 | 1e-107 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.946 | 0.704 | 0.390 | 1e-107 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.940 | 0.646 | 0.380 | 1e-105 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.913 | 0.716 | 0.380 | 1e-104 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.917 | 0.723 | 0.382 | 1e-103 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.911 | 0.806 | 0.407 | 1e-103 |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 272/492 (55%), Positives = 378/492 (76%), Gaps = 7/492 (1%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLN- 59
MI+ GL+++N +++FI++CS+ G YAYS+FTH+ P+ YL+NT I+AL D P
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH 97
Query: 60 --AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
A+ +Y K+ A +PD ++FPFVLK V++S + GR+IH Q V G DS VHVV L
Sbjct: 98 SIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGL 157
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNV 175
IQMY SC + DARK+FDE+ ++ +V VWN ++AGY KVG+++ AR+L E+M +N
Sbjct: 158 IQMYFSCGGLGDARKMFDEMLVK--DVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNE 215
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 235
+SWT +I+GYA+ + +EAI +F+RM +ENV+PDE+ +LA LSACA LG++ELGE I +Y
Sbjct: 216 VSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSY 275
Query: 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 295
++ G+N V LNNA+IDMYAKSG I KAL VFE + ++V+TWTT+IAGLA HG G EA
Sbjct: 276 VDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA 335
Query: 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
L MF+RM +A V+PN++TFIAILSAC HVG V+LG+R FN M+S+YGI P IE YGCMID
Sbjct: 336 LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMID 395
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG L+EA+++++ MPF+ANAAIWGSLLAASN++ D+ELGE AL LIKLEP+NSGN
Sbjct: 396 LLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGN 455
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
Y +L+N+Y+ LGRW+ES +R +M+ +GVKKM G S IEV RV++F++GD +HP +R+
Sbjct: 456 YMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERI 515
Query: 476 YQILCKINGQMK 487
++IL +++ Q++
Sbjct: 516 HEILQEMDLQIQ 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/471 (42%), Positives = 311/471 (66%), Gaps = 3/471 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
+I+ GL Q++ ++++ +D C + DYA +F S P+V+LYN+ I+A +
Sbjct: 33 IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92
Query: 61 VILYNKIQASALR-PDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119
+ +Y ++ + PD ++FPF+ K+ L + LG+++H G V ALI
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALID 152
Query: 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWT 179
MY + DA KVFDE+ R +V WN++++GYA++G + A+ LF LM +K ++SWT
Sbjct: 153 MYMKFDDLVDAHKVFDEMYER--DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWT 210
Query: 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239
+I+GY + EA+ FR MQ+ ++PDEI++++ L +CAQLG++ELG+WIH Y E+
Sbjct: 211 AMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERR 270
Query: 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF 299
G + NALI+MY+K G I +A+Q+F M+ K VI+W+TMI+G A HG A++ F
Sbjct: 271 GFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETF 330
Query: 300 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359
+ M+RA+VKPN ITF+ +LSAC HVG+ + G RYF++M+ Y IEPKIE YGC+ID+L R
Sbjct: 331 NEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLAR 390
Query: 360 AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419
AG L+ A ++ + MP + ++ IWGSLL++ G++++ A+ HL++LEP + GNY +L
Sbjct: 391 AGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLL 450
Query: 420 SNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHP 470
+NIYA LG+W + ++RK++R+ +KK PG S IEV+ V EFV+GD S P
Sbjct: 451 ANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKP 501
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/478 (42%), Positives = 305/478 (63%), Gaps = 5/478 (1%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSD---YAYSIFTHKSKPDVYLYNTTIKALCQTDNP 57
M+ GL Q+++ +++F+ C S SD YA +F +PD +L+N I+ +D P
Sbjct: 37 MLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEP 96
Query: 58 LNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
+++LY ++ S+ + Y+FP +LKA LS E +IH Q G ++DV+ V +L
Sbjct: 97 ERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSL 156
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS 177
I YA A +FD + + WN+++ GY K G ++ A LF M EKN IS
Sbjct: 157 INSYAVTGNFKLAHLLFDRIPEP--DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAIS 214
Query: 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237
WTT+I+GY Q D EA+ LF MQ +V+PD +++ ALSACAQLGA+E G+WIH+Y+
Sbjct: 215 WTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLN 274
Query: 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 297
+ + L LIDMYAK G++ +AL+VF+N+K KSV WT +I+G A HG GREA+
Sbjct: 275 KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAIS 334
Query: 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357
F M++ +KPN ITF A+L+AC + GLVE G+ F M+ Y ++P IE YGC++DLL
Sbjct: 335 KFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLL 394
Query: 358 GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417
GRAG L EA++ ++ MP + NA IWG+LL A I+ ++ELGE + LI ++P++ G Y
Sbjct: 395 GRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYV 454
Query: 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
+NI+A+ +W+++ + R++M++ GV K+PGCS I + HEF+AGD SHP+ +++
Sbjct: 455 HKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/493 (39%), Positives = 309/493 (62%), Gaps = 6/493 (1%)
Query: 1 MIVRGLDQNNHLLSRFIDSC--SSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPL 58
+ V G +++HL+ F+ + S + DYA I KP ++ N+ I+A C++ P
Sbjct: 29 LYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPE 88
Query: 59 NAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116
+ Y +I +S L+PDNY+ F+++A L E G ++H T+ G D+D HV
Sbjct: 89 KSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTG 148
Query: 117 LIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI 176
LI +YA C+ KVF+ S+ + MV A+ GD+ AR LFE M E++ I
Sbjct: 149 LISLYAELGCLDSCHKVFN--SIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPI 206
Query: 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236
+W +I+GYAQ+ + EA+ +F MQ+E VK + +AM++ LSAC QLGA++ G W H+YI
Sbjct: 207 AWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYI 266
Query: 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296
E+ + V L L+D+YAK G + KA++VF M+ K+V TW++ + GLA++G G + L
Sbjct: 267 ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326
Query: 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356
++FS M++ V PN +TF+++L C VG V+ G+R+F+ M++ +GIEP++E YGC++DL
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDL 386
Query: 357 LGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416
RAG L++A ++++MP + +AA+W SLL AS +Y ++ELG A + +++LE N G Y
Sbjct: 387 YARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAY 446
Query: 417 AILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLY 476
+LSNIYA W+ +R+ M+ GV+K PGCS +EV+ VHEF GD SHP + ++
Sbjct: 447 VLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQID 506
Query: 477 QILCKINGQMKFA 489
+ I+ +++ A
Sbjct: 507 AVWKDISRRLRLA 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/485 (39%), Positives = 305/485 (62%), Gaps = 6/485 (1%)
Query: 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNK 66
DQ+ ++ I CS+L DYAY +F++ S P+VYLY I + + V LY++
Sbjct: 58 DQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHR 117
Query: 67 IQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126
+ +++ PDNY V+ +V+K +++ REIH Q + G S V ++++Y
Sbjct: 118 MIHNSVLPDNY----VITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGE 173
Query: 127 IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYA 186
+ +A+K+FDE+ R A M+ Y++ G + A LF+ + K+ + WT +I G
Sbjct: 174 LVNAKKMFDEMPDRDHVAAT--VMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLV 231
Query: 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 246
+ + N+A+ LFR MQ+ENV +E + LSAC+ LGA+ELG W+H+++E +
Sbjct: 232 RNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF 291
Query: 247 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERAR 306
+ NALI+MY++ G I +A +VF M++K VI++ TMI+GLA+HG EA++ F M
Sbjct: 292 VGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRG 351
Query: 307 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366
+PN++T +A+L+AC H GL+++G FN MK + +EP+IE YGC++DLLGR G L+EA
Sbjct: 352 FRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEA 411
Query: 367 EKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426
+ + +P E + + G+LL+A I+G++ELGE + L + E +SG Y +LSN+YA
Sbjct: 412 YRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASS 471
Query: 427 GRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQM 486
G+W ES +IR+ MRD G++K PGCS IEV ++HEF+ GD +HP + +YQ L ++N +
Sbjct: 472 GKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRIL 531
Query: 487 KFAEH 491
+F E+
Sbjct: 532 RFKEN 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 301/482 (62%), Gaps = 2/482 (0%)
Query: 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYN 65
L+ +H+ + I +S G + A +F D+ +N I + A+ +Y
Sbjct: 187 LELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYK 246
Query: 66 KIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK 125
+++ ++PD+ + ++ + L + G+E + GL + +V AL+ M++ C
Sbjct: 247 LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCG 306
Query: 126 CIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGY 185
I++AR++FD L R + W TM++GYA+ G L+ +R LF+ M EK+V+ W +I G
Sbjct: 307 DIHEARRIFDNLEKRT--IVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGS 364
Query: 186 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245
Q + +A+ LF+ MQ N KPDEI M+ LSAC+QLGA+++G WIH YIE+Y L+ V
Sbjct: 365 VQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNV 424
Query: 246 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305
L +L+DMYAK G I +AL VF ++ ++ +T+T +I GLALHG A+ F+ M A
Sbjct: 425 ALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA 484
Query: 306 RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365
+ P+EITFI +LSACCH G+++ GR YF+ MKSR+ + P+++ Y M+DLLGRAG L+E
Sbjct: 485 GIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEE 544
Query: 366 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425
A++L+ MP EA+AA+WG+LL ++G+VELGE A + L++L+P +SG Y +L +Y
Sbjct: 545 ADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGE 604
Query: 426 LGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 485
W ++ + R++M + GV+K+PGCS IEV+ V EF+ D S P+ +++Y L +
Sbjct: 605 ANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRH 664
Query: 486 MK 487
M+
Sbjct: 665 MR 666
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 300/481 (62%), Gaps = 4/481 (0%)
Query: 22 SLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81
S G D A +FT + DV +N+ I Q +P A+ L+ K+++ ++ + +
Sbjct: 178 SCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVG 237
Query: 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRV 141
VL A K+ +E GR++ ++ ++ + A++ MY C I DA+++FD + +
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK- 296
Query: 142 WNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201
+ W TM+ GYA D AR + M +K++++W LI+ Y Q +PNEA+ +F +
Sbjct: 297 -DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL 355
Query: 202 QVE-NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 260
Q++ N+K ++I +++ LSACAQ+GA+ELG WIH+YI+++G+ + +ALI MY+K G
Sbjct: 356 QLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGD 415
Query: 261 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320
+ K+ +VF +++ + V W+ MI GLA+HG G EA+DMF +M+ A VKPN +TF + A
Sbjct: 416 LEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
Query: 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA 380
C H GLV+ F+ M+S YGI P+ + Y C++D+LGR+GYL++A K + MP + +
Sbjct: 476 CSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTS 535
Query: 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440
+WG+LL A I+ ++ L E A L++LEP N G + +LSNIYA LG+W ++RK MR
Sbjct: 536 VWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMR 595
Query: 441 DMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVL 500
G+KK PGCS IE+ +HEF++GD +HP +++Y L ++ ++K + + E S VL
Sbjct: 596 VTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK-SNGYEPEISQVL 654
Query: 501 E 501
+
Sbjct: 655 Q 655
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/478 (38%), Positives = 293/478 (61%), Gaps = 15/478 (3%)
Query: 27 DYAYSIFTHKSKPDVYLYNTTIKALCQTDNP---LNAVILYNKIQASALRPDNYSFPFVL 83
DYA+ IF + + + +NT I+ ++D + + Y + + P+ ++FP VL
Sbjct: 76 DYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVL 135
Query: 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVF--------- 134
KA K I+ G++IH + G D V++ L++MY C + DAR +F
Sbjct: 136 KACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDM 195
Query: 135 ---DELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQP 191
+ R + +WN M+ GY ++GD AR LF+ M +++V+SW T+I+GY+
Sbjct: 196 VVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFF 255
Query: 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 251
+A+ +FR M+ +++P+ + +++ L A ++LG++ELGEW+H Y E G+ L +AL
Sbjct: 256 KDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 315
Query: 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE 311
IDMY+K G I KA+ VFE + ++VITW+ MI G A+HG +A+D F +M +A V+P++
Sbjct: 316 IDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 375
Query: 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371
+ +I +L+AC H GLVE GRRYF+ M S G+EP+IE YGCM+DLLGR+G L EAE+ +
Sbjct: 376 VAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFIL 435
Query: 372 RMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431
MP + + IW +LL A + G+VE+G+ L+ + PH+SG Y LSN+YA G W+E
Sbjct: 436 NMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSE 495
Query: 432 SGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 489
++R M++ ++K PGCS I++ +HEFV D SHP + +L +I+ +++ A
Sbjct: 496 VSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/500 (38%), Positives = 296/500 (59%), Gaps = 35/500 (7%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSD---YAYSIFTHKSKPDVYLYNTTIKALCQTDNP 57
I G+D +++ + I C+ + SD YA + +PD +++NT ++ ++D P
Sbjct: 28 FIKYGVDTDSYFTGKLILHCA-ISISDALPYARRLLLCFPEPDAFMFNTLVRGYSESDEP 86
Query: 58 LNAVILY-NKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116
N+V ++ ++ + PD++SF FV+KAV ++ G ++HCQ + GL+S + V
Sbjct: 87 HNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTT 146
Query: 117 LIQMYASCKCIYDARKVFDEL---SLRVWNVAV--------------------------W 147
LI MY C C+ ARKVFDE+ +L WN + W
Sbjct: 147 LIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSW 206
Query: 148 NTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 207
N M+AGY K G+L +A+ +F M ++ +SW+T+I G A NE+ FR +Q +
Sbjct: 207 NVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS 266
Query: 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 267
P+E+++ LSAC+Q G+ E G+ +H ++E+ G + IV +NNALIDMY++ G + A V
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326
Query: 268 FENMKNKS-VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 326
FE M+ K +++WT+MIAGLA+HG G EA+ +F+ M V P+ I+FI++L AC H GL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386
Query: 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 386
+E G YF+ MK Y IEP+IE YGCM+DL GR+G LQ+A + +MP A +W +LL
Sbjct: 387 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 446
Query: 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446
A + +G++EL E Q L +L+P+NSG+ +LSN YA G+W + IRK M +KK
Sbjct: 447 GACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKK 506
Query: 447 MPGCSYIEVSKRVHEFVAGD 466
S +EV K +++F AG+
Sbjct: 507 TTAWSLVEVGKTMYKFTAGE 526
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 295/481 (61%), Gaps = 19/481 (3%)
Query: 28 YAYSIFTHKS-KPDVYLYNTTIKALC------QTDNPLNAVILYNKIQASALRPDNYSFP 80
YA IF + K + +L+N I+A+ Q +P++ +Y +++ + PD ++FP
Sbjct: 10 YANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPIS---VYLRMRNHRVSPDFHTFP 66
Query: 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR 140
F+L + + LG+ H Q + GLD D V +L+ MY+SC + A++VFD+ +
Sbjct: 67 FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK 126
Query: 141 VWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRR 200
++ WN++V YAK G +++AR LF+ M E+NVISW+ LI GY + EA+ LFR
Sbjct: 127 --DLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 201 MQVEN-----VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 255
MQ+ V+P+E M LSAC +LGA+E G+W+H YI++Y + + L ALIDMY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 256 AKSGKIGKALQVFENM-KNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEIT 313
AK G + +A +VF + K V ++ MI LA++GL E +FS M + + PN +T
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVT 304
Query: 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373
F+ IL AC H GL+ G+ YF +M +GI P I+ YGCM+DL GR+G ++EAE + M
Sbjct: 305 FVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 364
Query: 374 PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433
P E + IWGSLL+ S + GD++ E AL+ LI+L+P NSG Y +LSN+YA GRW E
Sbjct: 365 PMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVK 424
Query: 434 KIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQ 493
IR M G+ K+PGCSY+EV VHEFV GD S + +R+Y +L +I +++ A ++
Sbjct: 425 CIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVT 484
Query: 494 N 494
+
Sbjct: 485 D 485
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 225435834 | 576 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.875 | 0.705 | 0.0 | |
| 147774372 | 576 | hypothetical protein VITISV_041201 [Viti | 0.994 | 0.875 | 0.703 | 0.0 | |
| 224073108 | 508 | predicted protein [Populus trichocarpa] | 0.988 | 0.986 | 0.662 | 0.0 | |
| 449452775 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.910 | 0.648 | 0.0 | |
| 255564780 | 538 | pentatricopeptide repeat-containing prot | 0.986 | 0.929 | 0.619 | 0.0 | |
| 356577724 | 549 | PREDICTED: pentatricopeptide repeat-cont | 0.946 | 0.874 | 0.604 | 1e-172 | |
| 357439099 | 526 | Pentatricopeptide repeat-containing prot | 0.958 | 0.923 | 0.602 | 1e-163 | |
| 297793123 | 531 | pentatricopeptide repeat-containing prot | 0.962 | 0.919 | 0.551 | 1e-160 | |
| 15241180 | 530 | pentatricopeptide repeat-containing prot | 0.956 | 0.915 | 0.552 | 1e-159 | |
| 242052493 | 506 | hypothetical protein SORBIDRAFT_03g01005 | 0.773 | 0.774 | 0.567 | 1e-135 |
| >gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/506 (70%), Positives = 430/506 (84%), Gaps = 2/506 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
M+ RGLDQ+N LLSRFI++CSSLGFS Y++SIFTHK++PD+YLYNT IKAL + A
Sbjct: 64 MLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEA 123
Query: 61 VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120
++LYN+I AS LR D YS PFVLKAVV+L I +GR+IHCQ +GTGL SD+HVV ALIQM
Sbjct: 124 ILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQM 183
Query: 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT 180
Y+SC C+ +AR++FD + R +VA WN MVAGYAKVGD++NAR LFE M E+NVISWT
Sbjct: 184 YSSCGCVSEARQLFDGVCFR--DVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTA 241
Query: 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240
+IAGYAQMD+PNEAIT+FRRMQ+E V+PDEIAMLAALSACA LGA+ELGEWIHNYI+++G
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301
Query: 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300
L+ IVPLNNALIDMYAK GKI KAL+VF+NM++KSVITWT+MI GLALHGLGREAL+MFS
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361
Query: 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360
MER R+KPNEITF+AILSACCHVGLVE+GR YF M ++YGI+PKI+ YGCMIDLLGRA
Sbjct: 362 CMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRA 421
Query: 361 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420
G+LQEA++L+R MPFEANA IWGSLLAA+ I+GD ELG+ ALQHLIK+EPHNSGNY +LS
Sbjct: 422 GFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLS 481
Query: 421 NIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILC 480
NIYA +WNE+G +RKVMRD GVKKMPG S IEV+ RVHEFVAGD HP +R++++LC
Sbjct: 482 NIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLC 541
Query: 481 KINGQMKFAEHLQNEFSGVLESDVAS 506
KIN Q K A ++Q E +LES+ S
Sbjct: 542 KINLQSKIAMYVQKEHVEMLESNKES 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/506 (70%), Positives = 430/506 (84%), Gaps = 2/506 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
M+ RGLDQ+N LLSRFI++CSSLGFS Y++SIFTHK++PD+YLYNT IKAL + A
Sbjct: 64 MLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEA 123
Query: 61 VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120
++LYN+I AS LR D YS PFVLKAVV+L I +GR+IHCQ +GTGL SD+HVV ALIQM
Sbjct: 124 ILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQM 183
Query: 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT 180
Y+SC C+ +AR++FD + R +VA WN MVAGYAKVGD++NAR LFE M E+NVISWT
Sbjct: 184 YSSCGCVSEARQLFDGVCFR--DVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTA 241
Query: 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240
+IAGYAQMD+PNEAIT+FRRMQ+E V+PDEIAMLAALSACA LGA+ELGEWIHNYI+++G
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301
Query: 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300
L+ IVPLNNALIDMYAK GKI KAL+VF+NM++KSVITWT+MI GLALHGLGREAL+MFS
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361
Query: 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360
MER R+KPNEITF+AILSACCHVGLVE+GR YF M ++YGI+PKI+ YGCMIDLLGRA
Sbjct: 362 CMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRA 421
Query: 361 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420
G+LQEA++L+R MPFEANA IWGSLLAA+ I+GD ELG+ ALQHLIK+EPHNSGNY +LS
Sbjct: 422 GFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLS 481
Query: 421 NIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILC 480
NIYA +WNE+G +RKVMRD GVKKMPG S IEV+ RVHEFVAGD HP +R++++LC
Sbjct: 482 NIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERIFEVLC 541
Query: 481 KINGQMKFAEHLQNEFSGVLESDVAS 506
KJN Q K A ++Q E +LES+ S
Sbjct: 542 KJNLQSKIAMYVQKEHVEMLESNKES 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa] gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/506 (66%), Positives = 406/506 (80%), Gaps = 5/506 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK-PDVYLYNTTIKALCQT-DNPL 58
M++R LD +N LLSRFI +CSSLGF YAYS+FT + PD+YLYN IKAL + +P
Sbjct: 1 MLLRALDTDNLLLSRFIHACSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPK 60
Query: 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI 118
++ LYN IQ + LRPD+YSFPF LKAV + S+I+ GR++H Q++ GL SD+HV+ A +
Sbjct: 61 ASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFV 120
Query: 119 QMYAS--CKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI 176
QMY+S CI DARK+FD +S+ +VA+WN M+ GYAK GDL NAR LFE M ++NVI
Sbjct: 121 QMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVI 180
Query: 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236
SWT LI GYAQ ++P++AI LFRRMQ+ENV+PDEIAML AL+ACA+LGA+ELGEWI +YI
Sbjct: 181 SWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYI 240
Query: 237 EQYGL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 295
++ GL T +PLNNALIDMYAKSG I ALQVFENM +K++ITWTTMIAGLALHGLG EA
Sbjct: 241 DRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEA 300
Query: 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
L+MFSRMERARVKPN+ITFIAILSAC HVGLV+ GR YFN M SRYGIEPKIE YGCMID
Sbjct: 301 LEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMID 360
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG+L+EA+ LL +MPFE NA IWGSLLAA N +GD ELGE ALQHL++LEP NSGN
Sbjct: 361 LLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGN 420
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
YA+LSNIYA GRWNES +RKVM D GVKKMPG S IEV+ RVHEF+AG+ SH FDR+
Sbjct: 421 YALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRI 480
Query: 476 YQILCKINGQMKFAEHLQNEFSGVLE 501
++L KIN Q+ ++H + E +LE
Sbjct: 481 QEVLSKINRQLGLSQHFEKESGALLE 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cucumis sativus] gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/501 (64%), Positives = 402/501 (80%), Gaps = 2/501 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
M+ R LDQ+N LS+FID+C+SLG S YA+SIF++K+ PD+ LYNT IKAL +T +P+NA
Sbjct: 47 MLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINA 106
Query: 61 VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120
+ LY +I+ LRPD+YS P VLKAVVKLS +E+GR+IH QTV + LD DV+V +LIQM
Sbjct: 107 IWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQM 166
Query: 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT 180
Y+SC + DARK+FD + + +VA+WN MVAGY KVG+L +AR +F M ++NVISWTT
Sbjct: 167 YSSCGFVSDARKLFDFVGFK--DVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTT 224
Query: 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240
LIAGYAQ ++P+EAI LFR+MQ+E V+PDEIAMLA LSACA LGA+ELGEWIHNYIE++G
Sbjct: 225 LIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHG 284
Query: 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300
L IV L NALIDMYAKSG I +AL+VFENMK KSVITW+T+IA LALHGLG EA+DMF
Sbjct: 285 LCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFL 344
Query: 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360
RME+A+V+PNE+TF+AILSAC HVG+V++GR YF+ M+S Y IEPKIE YGCMIDLL RA
Sbjct: 345 RMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARA 404
Query: 361 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420
GYLQEA+KLL MPFEANA IWGSLLAASN + D EL + AL+HL KLEP NSGNY +LS
Sbjct: 405 GYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLS 464
Query: 421 NIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILC 480
N YA LG+WNESG +RK+MR+ GVKK PG S IE++ V+EF+AGD S +Y +LC
Sbjct: 465 NTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVLC 524
Query: 481 KINGQMKFAEHLQNEFSGVLE 501
KI Q+K A Q E+S L+
Sbjct: 525 KIILQLKMAGSYQEEWSKFLD 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/502 (61%), Positives = 402/502 (80%), Gaps = 2/502 (0%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKP-DVYLYNTTIKALCQTDNPLN 59
M+ R LD +N LLS FI S SSLGFS YAYS+FT + P +++LYNT I+AL + P
Sbjct: 34 MLCRALDHDNLLLSLFIQSSSSLGFSLYAYSLFTSLTHPPNIFLYNTIIRALSLSPQPSL 93
Query: 60 AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119
++ L+N+IQ++ LRPD+YSFPF LKAV++LS + G + H Q + GL S +HV+ +LI+
Sbjct: 94 SIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIR 153
Query: 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWT 179
MY+S I DARK+FD + L NVA+WN M+ YAK+ D+ NA+ LF+ M ++N+ISWT
Sbjct: 154 MYSSSH-ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWT 212
Query: 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239
LI+GYA +++P++AI +FR MQ++NV PDEI +LA LSACAQLGA+ELGEWI NYI+ +
Sbjct: 213 ALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIH 272
Query: 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMF 299
GL+ VPL+NALIDMYAKSG I +AL +FE+MK+K+++TWTTMIAGLALHGLG +AL+MF
Sbjct: 273 GLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMF 332
Query: 300 SRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359
SRMER RVKPNEITFIA+LSAC HVGLV+L R +F M+SRY I+PKIE YGCMIDLLGR
Sbjct: 333 SRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGR 392
Query: 360 AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419
AGYLQEA++LL++MPFE NAAIWGSLLAAS +GD LGE L+HLI+LEP+NSGNYA+L
Sbjct: 393 AGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALL 452
Query: 420 SNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 479
SNIYA LGRW S +RK+MRD GVKK+PG S+IEV+ RV+EF+AG+TSHP FD +Y+++
Sbjct: 453 SNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVNNRVNEFIAGETSHPQFDEIYEVI 512
Query: 480 CKINGQMKFAEHLQNEFSGVLE 501
KIN Q + +E L+ E +LE
Sbjct: 513 YKINEQSRLSESLEKECFELLE 534
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/490 (60%), Positives = 377/490 (76%), Gaps = 10/490 (2%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
M+ RGLDQ++ LL+RFI + +SLG S YAYS+F +P ++ YN I AL + NP A
Sbjct: 53 MLTRGLDQDDILLARFIYTSASLGLSSYAYSVFISNHRPSIFFYNNVIWAL-SSSNPTRA 111
Query: 61 VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120
+ L+N I+ + PD+YSFPFVLKAVV LS + +G++IHCQ + +GLDS VV +L+QM
Sbjct: 112 ISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQM 171
Query: 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKN--VISW 178
Y+SC + ARK+FD + + + +WN M+AGYAKVG+++NAR LFE M EK+ V+SW
Sbjct: 172 YSSCAHLSSARKLFDGATFK--HAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSW 229
Query: 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 238
TTLI+GY Q PNEAITLFR M ++NV+PDEIA+LA LSACA LGA++LGEWIHNYIE+
Sbjct: 230 TTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEK 289
Query: 239 YG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296
+ L VPL N+LIDMYAKSG I KA Q+F+NMK+K++ITWTT+I+GLALHG G+EAL
Sbjct: 290 HNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEAL 349
Query: 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356
D+FS ME+ARVKPNE+T IA+LSAC HVGLVELGR F M+S+YGIEPKIE YGCMIDL
Sbjct: 350 DVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDL 409
Query: 357 LGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416
LGRAGYLQEA +L+R MP EANAA+WGSLL+ASN YGD L AL+HL LEPHN GNY
Sbjct: 410 LGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNY 469
Query: 417 AILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLY 476
++LSN YA LG W E+ +RKVMRD +K+PG S++E++ RV+EF+AGD + F
Sbjct: 470 SLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVYEFIAGDKLNICF---L 526
Query: 477 QILCKINGQM 486
+L INGQ+
Sbjct: 527 DVLQSINGQL 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 299/496 (60%), Positives = 371/496 (74%), Gaps = 10/496 (2%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFT--HKSKPDVYLYNTTIKALCQTDNPL 58
++ L QN+ LSRFI +SL + Y+YSIFT H +++YN I AL ++ L
Sbjct: 36 ILKHALFQNDINLSRFIHKTASLNYPSYSYSIFTFNHNRPFPIFVYNNIIYALYSSNAKL 95
Query: 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI 118
AV ++ ++ L D+YS P+VLK+VV L+ LG++IHC V TGLD +V V ++LI
Sbjct: 96 -AVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLI 154
Query: 119 QMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE--KNVI 176
QMY SC + ARK+FDE N V N M+ Y KVGD++NAR LF+ M E K+V
Sbjct: 155 QMY-SCYDVCSARKLFDEFG---GNGCVLNAMIVAYVKVGDVSNARKLFDSMLERDKDVF 210
Query: 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236
SWT +I+GY Q PNEAI LFRRMQ+ENVKPDEIA+LA LSACA LGA+ LGEWIHNYI
Sbjct: 211 SWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYI 270
Query: 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296
E++ L+ IVPL N+LIDMYAKSG I KAL++FENMK+K++ITWTTMIAGLALHGLG+EAL
Sbjct: 271 EKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEAL 330
Query: 297 DMFSRMERA-RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
+FS ME+ RVKPNE+TFIAILSAC HVGLVELGR YF M+SRYGIEPKIE YGCMID
Sbjct: 331 RVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMID 390
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG+LQEA++++ RMPFEANAAIWGSLLAAS GD EL E AL+HL LEP + GN
Sbjct: 391 LLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGN 450
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
Y++LSN YA LGRWNES +RKVM+D GV+K+PG S+IEV+ V+EF+AGD F +
Sbjct: 451 YSLLSNTYASLGRWNESRMVRKVMQDAGVEKVPGVSFIEVNNIVYEFIAGDKLSIYFVDI 510
Query: 476 YQILCKINGQMKFAEH 491
Y +L ++GQ+K H
Sbjct: 511 YDVLHSLDGQIKIEIH 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/495 (55%), Positives = 378/495 (76%), Gaps = 7/495 (1%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLN- 59
MI+ GL+++N +++FI++CS+ G YAYS+FTH+ P+ YL+NT I+AL D
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIRALSLVDERNAH 97
Query: 60 --AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
A+ +Y K A +PD ++FPFVLK VV++S + GR++H Q V G DS VHVV L
Sbjct: 98 SIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGL 157
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNV 175
IQMY+SC + DARKVFDE+ RV +V VWN ++AGY KVG+++ AR L E+M +N
Sbjct: 158 IQMYSSCGGLGDARKVFDEM--RVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNA 215
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 235
+SWT +I+GYA+ + +EAI +F+RM +ENV PDE+ +LA LSACA LG++ELGE I +Y
Sbjct: 216 VSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSY 275
Query: 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 295
++ G+N V LNNA+IDMYAKSG I KAL+VFE++ ++V+TWTT+I GLA HG G EA
Sbjct: 276 VDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEA 335
Query: 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
L MF RM +A VKPN++TFIAILSAC HVG V+LG R+FN M+S+YGI P IE YGCMID
Sbjct: 336 LVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMID 395
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG L+EAE++++ MPFE+NAAIWGSLLAASN++ D+++GE AL LIKLEP+NSGN
Sbjct: 396 LLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLEPNNSGN 455
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
Y +L+N+Y+ LGRW+ES +RK+M+ +GVKK+ G S IEV RV++F++GD SHP +++
Sbjct: 456 YMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDLSHPQVEKI 515
Query: 476 YQILCKINGQMKFAE 490
+++L +++ Q++ E
Sbjct: 516 HELLQEMDLQIQSNE 530
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana] gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/492 (55%), Positives = 378/492 (76%), Gaps = 7/492 (1%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLN- 59
MI+ GL+++N +++FI++CS+ G YAYS+FTH+ P+ YL+NT I+AL D P
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH 97
Query: 60 --AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
A+ +Y K+ A +PD ++FPFVLK V++S + GR+IH Q V G DS VHVV L
Sbjct: 98 SIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGL 157
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNV 175
IQMY SC + DARK+FDE+ ++ +V VWN ++AGY KVG+++ AR+L E+M +N
Sbjct: 158 IQMYFSCGGLGDARKMFDEMLVK--DVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNE 215
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 235
+SWT +I+GYA+ + +EAI +F+RM +ENV+PDE+ +LA LSACA LG++ELGE I +Y
Sbjct: 216 VSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSY 275
Query: 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 295
++ G+N V LNNA+IDMYAKSG I KAL VFE + ++V+TWTT+IAGLA HG G EA
Sbjct: 276 VDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA 335
Query: 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
L MF+RM +A V+PN++TFIAILSAC HVG V+LG+R FN M+S+YGI P IE YGCMID
Sbjct: 336 LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMID 395
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG L+EA+++++ MPF+ANAAIWGSLLAASN++ D+ELGE AL LIKLEP+NSGN
Sbjct: 396 LLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGN 455
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
Y +L+N+Y+ LGRW+ES +R +M+ +GVKKM G S IEV RV++F++GD +HP +R+
Sbjct: 456 YMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERI 515
Query: 476 YQILCKINGQMK 487
++IL +++ Q++
Sbjct: 516 HEILQEMDLQIQ 527
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor] gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 303/395 (76%), Gaps = 3/395 (0%)
Query: 94 LGREIHCQTVGTG-LDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVA 152
LG ++H + TG + SD HV A+L+Q+Y +C+ + DAR VF E+++R +V WN M+A
Sbjct: 96 LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVR--DVVAWNVMIA 153
Query: 153 GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA 212
GY K GDL +AR LF+ M E+NV+SWTT+I GYAQM +P EA+ +FRRMQVE ++PD +A
Sbjct: 154 GYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVA 213
Query: 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 272
+L+ LSAC LGAV+LGEW+H ++ + GL +PL N++IDMY K G I KA++VFE M+
Sbjct: 214 LLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGME 273
Query: 273 NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 332
KSV+TWTT+IAG ALHGLG +A++MF RMER + PN++TF+AILSAC HVGL +LGR
Sbjct: 274 EKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRW 333
Query: 333 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 392
YFNIM S+Y I+P++E YGCM+DLLGRAG L+EA+ L++ MP +ANAAIWG+LLAAS +
Sbjct: 334 YFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTH 393
Query: 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 452
GD +LGE AL HLI+LEP NSGNY +LSNI+A RW++ K+RK M++ G++ +PG S
Sbjct: 394 GDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASS 453
Query: 453 IEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487
IEV VHEF + D SHP ++ ++LC+IN MK
Sbjct: 454 IEVDGMVHEFTSRDGSHPFLHKICEVLCEINTNMK 488
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.956 | 0.915 | 0.552 | 9.3e-146 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.936 | 0.889 | 0.419 | 3.9e-108 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.932 | 0.762 | 0.422 | 9.5e-105 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.960 | 0.795 | 0.391 | 2.1e-100 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.946 | 0.704 | 0.390 | 6.4e-99 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.954 | 0.655 | 0.382 | 1.2e-97 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.696 | 0.535 | 0.410 | 3.8e-95 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.913 | 0.808 | 0.409 | 5.3e-95 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.913 | 0.716 | 0.387 | 6.8e-95 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.936 | 0.657 | 0.371 | 1.5e-92 |
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 272/492 (55%), Positives = 378/492 (76%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLN- 59
MI+ GL+++N +++FI++CS+ G YAYS+FTH+ P+ YL+NT I+AL D P
Sbjct: 38 MIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAH 97
Query: 60 --AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
A+ +Y K+ A +PD ++FPFVLK V++S + GR+IH Q V G DS VHVV L
Sbjct: 98 SIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGL 157
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNV 175
IQMY SC + DARK+FDE+ ++ +V VWN ++AGY KVG+++ AR+L E+M +N
Sbjct: 158 IQMYFSCGGLGDARKMFDEMLVK--DVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNE 215
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 235
+SWT +I+GYA+ + +EAI +F+RM +ENV+PDE+ +LA LSACA LG++ELGE I +Y
Sbjct: 216 VSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSY 275
Query: 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREA 295
++ G+N V LNNA+IDMYAKSG I KAL VFE + ++V+TWTT+IAGLA HG G EA
Sbjct: 276 VDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA 335
Query: 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
L MF+RM +A V+PN++TFIAILSAC HVG V+LG+R FN M+S+YGI P IE YGCMID
Sbjct: 336 LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMID 395
Query: 356 LLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415
LLGRAG L+EA+++++ MPF+ANAAIWGSLLAASN++ D+ELGE AL LIKLEP+NSGN
Sbjct: 396 LLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGN 455
Query: 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
Y +L+N+Y+ LGRW+ES +R +M+ +GVKKM G S IEV RV++F++GD +HP +R+
Sbjct: 456 YMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERI 515
Query: 476 YQILCKINGQMK 487
++IL +++ Q++
Sbjct: 516 HEILQEMDLQIQ 527
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 202/482 (41%), Positives = 317/482 (65%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
+I+ GL Q++ ++++ +D C + DYA +F S P+V+LYN+ I+A +
Sbjct: 33 IIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDV 92
Query: 61 VILYNKIQASALR-PDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVA--AL 117
+ +Y ++ + PD ++FPF+ K+ L + LG+++H G HVV AL
Sbjct: 93 IRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFG--PRFHVVTENAL 150
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS 177
I MY + DA KVFDE+ R +V WN++++GYA++G + A+ LF LM +K ++S
Sbjct: 151 IDMYMKFDDLVDAHKVFDEMYER--DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVS 208
Query: 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237
WT +I+GY + EA+ FR MQ+ ++PDEI++++ L +CAQLG++ELG+WIH Y E
Sbjct: 209 WTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAE 268
Query: 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 297
+ G + NALI+MY+K G I +A+Q+F M+ K VI+W+TMI+G A HG A++
Sbjct: 269 RRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIE 328
Query: 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357
F+ M+RA+VKPN ITF+ +LSAC HVG+ + G RYF++M+ Y IEPKIE YGC+ID+L
Sbjct: 329 TFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVL 388
Query: 358 GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417
RAG L+ A ++ + MP + ++ IWGSLL++ G++++ A+ HL++LEP + GNY
Sbjct: 389 ARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYV 448
Query: 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQ 477
+L+NIYA LG+W + ++RK++R+ +KK PG S IEV+ V EFV+GD S P + +
Sbjct: 449 LLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISI 508
Query: 478 IL 479
+L
Sbjct: 509 VL 510
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/478 (42%), Positives = 307/478 (64%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSD---YAYSIFTHKSKPDVYLYNTTIKALCQTDNP 57
M+ GL Q+++ +++F+ C S SD YA +F +PD +L+N I+ +D P
Sbjct: 37 MLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEP 96
Query: 58 LNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117
+++LY ++ S+ + Y+FP +LKA LS E +IH Q G ++DV+ V +L
Sbjct: 97 ERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSL 156
Query: 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS 177
I YA A +FD + +V+ WN+++ GY K G ++ A LF M EKN IS
Sbjct: 157 INSYAVTGNFKLAHLLFDRIP-EPDDVS-WNSVIKGYVKAGKMDIALTLFRKMAEKNAIS 214
Query: 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237
WTT+I+GY Q D EA+ LF MQ +V+PD +++ ALSACAQLGA+E G+WIH+Y+
Sbjct: 215 WTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLN 274
Query: 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 297
+ + L LIDMYAK G++ +AL+VF+N+K KSV WT +I+G A HG GREA+
Sbjct: 275 KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAIS 334
Query: 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357
F M++ +KPN ITF A+L+AC + GLVE G+ F M+ Y ++P IE YGC++DLL
Sbjct: 335 KFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLL 394
Query: 358 GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417
GRAG L EA++ ++ MP + NA IWG+LL A I+ ++ELGE + LI ++P++ G Y
Sbjct: 395 GRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYV 454
Query: 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRL 475
+NI+A+ +W+++ + R++M++ GV K+PGCS I + HEF+AGD SHP+ +++
Sbjct: 455 HKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
Identities = 193/493 (39%), Positives = 309/493 (62%)
Query: 1 MIVRGLDQNNHLLSRFIDSC--SSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPL 58
+ V G +++HL+ F+ + S + DYA I KP ++ N+ I+A C++ P
Sbjct: 29 LYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPE 88
Query: 59 NAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116
+ Y +I +S L+PDNY+ F+++A L E G ++H T+ G D+D HV
Sbjct: 89 KSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTG 148
Query: 117 LIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI 176
LI +YA C+ KVF+ S+ + MV A+ GD+ AR LFE M E++ I
Sbjct: 149 LISLYAELGCLDSCHKVFN--SIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPI 206
Query: 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236
+W +I+GYAQ+ + EA+ +F MQ+E VK + +AM++ LSAC QLGA++ G W H+YI
Sbjct: 207 AWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYI 266
Query: 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296
E+ + V L L+D+YAK G + KA++VF M+ K+V TW++ + GLA++G G + L
Sbjct: 267 ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326
Query: 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356
++FS M++ V PN +TF+++L C VG V+ G+R+F+ M++ +GIEP++E YGC++DL
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDL 386
Query: 357 LGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416
RAG L++A ++++MP + +AA+W SLL AS +Y ++ELG A + +++LE N G Y
Sbjct: 387 YARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAY 446
Query: 417 AILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLY 476
+LSNIYA W+ +R+ M+ GV+K PGCS +EV+ VHEF GD SHP + ++
Sbjct: 447 VLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQID 506
Query: 477 QILCKINGQMKFA 489
+ I+ +++ A
Sbjct: 507 AVWKDISRRLRLA 519
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 188/482 (39%), Positives = 301/482 (62%)
Query: 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYN 65
L+ +H+ + I +S G + A +F D+ +N I + A+ +Y
Sbjct: 187 LELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYK 246
Query: 66 KIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK 125
+++ ++PD+ + ++ + L + G+E + GL + +V AL+ M++ C
Sbjct: 247 LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCG 306
Query: 126 CIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGY 185
I++AR++FD L R + W TM++GYA+ G L+ +R LF+ M EK+V+ W +I G
Sbjct: 307 DIHEARRIFDNLEKRT--IVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGS 364
Query: 186 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245
Q + +A+ LF+ MQ N KPDEI M+ LSAC+QLGA+++G WIH YIE+Y L+ V
Sbjct: 365 VQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNV 424
Query: 246 PLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305
L +L+DMYAK G I +AL VF ++ ++ +T+T +I GLALHG A+ F+ M A
Sbjct: 425 ALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA 484
Query: 306 RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365
+ P+EITFI +LSACCH G+++ GR YF+ MKSR+ + P+++ Y M+DLLGRAG L+E
Sbjct: 485 GIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEE 544
Query: 366 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425
A++L+ MP EA+AA+WG+LL ++G+VELGE A + L++L+P +SG Y +L +Y
Sbjct: 545 ADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGE 604
Query: 426 LGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 485
W ++ + R++M + GV+K+PGCS IEV+ V EF+ D S P+ +++Y L +
Sbjct: 605 ANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRH 664
Query: 486 MK 487
M+
Sbjct: 665 MR 666
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 189/494 (38%), Positives = 308/494 (62%)
Query: 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQA 69
N L+ + SC L D A +FT + DV +N+ I Q +P A+ L+ K+++
Sbjct: 170 NSLIHCYF-SCGDL---DSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMES 225
Query: 70 SALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTG-LDSDVHVVAALIQMYASCKCIY 128
++ + + VL A K+ +E GR++ C + ++ ++ + A++ MY C I
Sbjct: 226 EDVKASHVTMVGVLSACAKIRNLEFGRQV-CSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 129 DARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 188
DA+++FD + + NV W TM+ GYA D AR + M +K++++W LI+ Y Q
Sbjct: 285 DAKRLFDAMEEKD-NVT-WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQN 342
Query: 189 DQPNEAITLFRRMQVE-NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL 247
+PNEA+ +F +Q++ N+K ++I +++ LSACAQ+GA+ELG WIH+YI+++G+ +
Sbjct: 343 GKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHV 402
Query: 248 NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARV 307
+ALI MY+K G + K+ +VF +++ + V W+ MI GLA+HG G EA+DMF +M+ A V
Sbjct: 403 TSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANV 462
Query: 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 367
KPN +TF + AC H GLV+ F+ M+S YGI P+ + Y C++D+LGR+GYL++A
Sbjct: 463 KPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAV 522
Query: 368 KLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427
K + MP + ++WG+LL A I+ ++ L E A L++LEP N G + +LSNIYA LG
Sbjct: 523 KFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLG 582
Query: 428 RWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487
+W ++RK MR G+KK PGCS IE+ +HEF++GD +HP +++Y L ++ ++K
Sbjct: 583 KWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642
Query: 488 FAEHLQNEFSGVLE 501
+ + E S VL+
Sbjct: 643 -SNGYEPEISQVLQ 655
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 3.8e-95, Sum P(2) = 3.8e-95
Identities = 147/358 (41%), Positives = 235/358 (65%)
Query: 144 VAVWNTMVAGYAKVGD--LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201
V+V NT++ YAK G+ + AR +F+ + +K+ +S+ ++++ YAQ NEA +FRR+
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 202 QVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259
V+N V + I + L A + GA+ +G+ IH+ + + GL V + ++IDMY K G
Sbjct: 278 -VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCG 336
Query: 260 KIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 319
++ A + F+ MKNK+V +WT MIAG +HG +AL++F M + V+PN ITF+++L+
Sbjct: 337 RVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLA 396
Query: 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA 379
AC H GL G R+FN MK R+G+EP +E YGCM+DLLGRAG+LQ+A L++RM + ++
Sbjct: 397 ACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDS 456
Query: 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439
IW SLLAA I+ +VEL E ++ L +L+ N G Y +LS+IYA GRW + ++R +M
Sbjct: 457 IIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIM 516
Query: 440 RDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFS 497
++ G+ K PG S +E++ VH F+ GD HP +++Y+ L ++N ++ A ++ N S
Sbjct: 517 KNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSS 574
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 195/476 (40%), Positives = 293/476 (61%)
Query: 28 YAYSIFTHKS-KPDVYLYNTTIKALCQT-DNPL--NAVILYNKIQASALRPDNYSFPFVL 83
YA IF + K + +L+N I+A+ +P + + +Y +++ + PD ++FPF+L
Sbjct: 10 YANPIFHIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLL 69
Query: 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWN 143
+ + LG+ H Q + GLD D V +L+ MY+SC + A++VFD+ + +
Sbjct: 70 PSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSK--D 127
Query: 144 VAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203
+ WN++V YAK G +++AR LF+ M E+NVISW+ LI GY + EA+ LFR MQ+
Sbjct: 128 LPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQL 187
Query: 204 EN-----VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258
V+P+E M LSAC +LGA+E G+W+H YI++Y + + L ALIDMYAK
Sbjct: 188 PKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKC 247
Query: 259 GKIGKALQVFENM-KNKSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIA 316
G + +A +VF + K V ++ MI LA++GL E +FS M + + PN +TF+
Sbjct: 248 GSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVG 307
Query: 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376
IL AC H GL+ G+ YF +M +GI P I+ YGCM+DL GR+G ++EAE + MP E
Sbjct: 308 ILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPME 367
Query: 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436
+ IWGSLL+ S + GD++ E AL+ LI+L+P NSG Y +LSN+YA GRW E IR
Sbjct: 368 PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIR 427
Query: 437 KVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492
M G+ K+PGCSY+EV VHEFV GD S + +R+Y +L +I +++ A ++
Sbjct: 428 HEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYV 483
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 185/478 (38%), Positives = 299/478 (62%)
Query: 27 DYAYSIFTHKSKPDVYLYNTTIKALCQTDNP--LNAVILYNKIQASA-LRPDNYSFPFVL 83
DYA+ IF + + + +NT I+ ++D L A+ L+ ++ + + P+ ++FP VL
Sbjct: 76 DYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVL 135
Query: 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVF-------DE 136
KA K I+ G++IH + G D V++ L++MY C + DAR +F D
Sbjct: 136 KACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDM 195
Query: 137 LSL-----RVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQP 191
+ + R + +WN M+ GY ++GD AR LF+ M +++V+SW T+I+GY+
Sbjct: 196 VVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFF 255
Query: 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 251
+A+ +FR M+ +++P+ + +++ L A ++LG++ELGEW+H Y E G+ L +AL
Sbjct: 256 KDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSAL 315
Query: 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE 311
IDMY+K G I KA+ VFE + ++VITW+ MI G A+HG +A+D F +M +A V+P++
Sbjct: 316 IDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 375
Query: 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371
+ +I +L+AC H GLVE GRRYF+ M S G+EP+IE YGCM+DLLGR+G L EAE+ +
Sbjct: 376 VAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFIL 435
Query: 372 RMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431
MP + + IW +LL A + G+VE+G+ L+ + PH+SG Y LSN+YA G W+E
Sbjct: 436 NMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSE 495
Query: 432 SGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 489
++R M++ ++K PGCS I++ +HEFV D SHP + +L +I+ +++ A
Sbjct: 496 VSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 177/477 (37%), Positives = 291/477 (61%)
Query: 16 FIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPD 75
F+D +S G +YA ++F S DV +NT I+ C+ A L+ +++ S + PD
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPD 211
Query: 76 NYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD 135
++ A + + R I+ + + D H++ AL+ MYA C+ AR+ F
Sbjct: 212 EMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFR 271
Query: 136 ELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAI 195
++S+R N+ V MV+GY+K G L++A+ +F+ +K+++ WTT+I+ Y + D P EA+
Sbjct: 272 KMSVR--NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEAL 329
Query: 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 255
+F M +KPD ++M + +SACA LG ++ +W+H+ I GL + + +NNALI+MY
Sbjct: 330 RVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMY 389
Query: 256 AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI 315
AK G + VFE M ++V++W++MI L++HG +AL +F+RM++ V+PNE+TF+
Sbjct: 390 AKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFV 449
Query: 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF 375
+L C H GLVE G++ F M Y I PK+E YGCM+DL GRA L+EA +++ MP
Sbjct: 450 GVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPV 509
Query: 376 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435
+N IWGSL++A I+G++ELG+ A + +++LEP + G ++SNIYA RW + I
Sbjct: 510 ASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNI 569
Query: 436 RKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492
R+VM + V K G S I+ + + HEF+ GD H + +Y L ++ ++K A ++
Sbjct: 570 RRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYV 626
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMA1 | PP433_ARATH | No assigned EC number | 0.5528 | 0.9566 | 0.9150 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00024861001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (576 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-106 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-94 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-53 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-53 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-106
Identities = 167/486 (34%), Positives = 262/486 (53%), Gaps = 35/486 (7%)
Query: 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAV 61
+ G + + + I SLG A +F+ D + I + P A+
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374
Query: 62 ILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMY 121
Y ++ + PD + VL A L +++G ++H GL S V V ALI+MY
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 122 ASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL 181
+ CKCI A +VF + EK+VISWT++
Sbjct: 435 SKCKCIDKALEVF---------------------------------HNIPEKDVISWTSI 461
Query: 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241
IAG ++ EA+ FR+M + +KP+ + ++AALSACA++GA+ G+ IH ++ + G+
Sbjct: 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520
Query: 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 301
L NAL+D+Y + G++ A F N K V++W ++ G HG G A+++F+R
Sbjct: 521 GFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 302 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 361
M + V P+E+TFI++L AC G+V G YF+ M+ +Y I P ++ Y C++DLLGRAG
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
Query: 362 YLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421
L EA + +MP + A+WG+LL A I+ VELGE A QH+ +L+P++ G Y +L N
Sbjct: 640 KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699
Query: 422 IYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCK 481
+YA G+W+E ++RK MR+ G+ PGCS++EV +VH F+ D SHP + +L
Sbjct: 700 LYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759
Query: 482 INGQMK 487
+MK
Sbjct: 760 FYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 8e-94
Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 33/479 (6%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNA 60
+ G + + ++++R + G A +F + ++ + T I L N A
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 61 VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120
L+ ++ + +F +L+A L + G+++HC + TG+ D V ALI M
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTT 180
Y+ C I DAR VFD M EK ++W +
Sbjct: 269 YSKCGDIEDARCVFDG---------------------------------MPEKTTVAWNS 295
Query: 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240
++AGYA EA+ L+ M+ V D+ + ++L +E + H + + G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300
+ N AL+D+Y+K G++ A VF+ M K++I+W +IAG HG G +A++MF
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360
RM V PN +TF+A+LSAC + GL E G F M + I+P+ Y CMI+LLGR
Sbjct: 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475
Query: 361 GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420
G L EA ++RR PF+ +W +LL A I+ ++ELG A + L + P NY +L
Sbjct: 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535
Query: 421 NIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 479
N+Y GR E+ K+ + ++ G+ P C++IEV K+ H F +GD HP +YQ L
Sbjct: 536 NLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 6e-53
Identities = 104/303 (34%), Positives = 153/303 (50%), Gaps = 34/303 (11%)
Query: 29 AYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK 88
A +F + D +N I + L + L+ ++ ++ PD + V+ A
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 89 LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWN 148
L LGRE+H V TG DV V +LIQMY S +A KVF
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR------------ 348
Query: 149 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 208
M K+ +SWT +I+GY + P++A+ + M+ +NV P
Sbjct: 349 ---------------------METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 209 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 268
DEI + + LSACA LG +++G +H E+ GL + V + NALI+MY+K I KAL+VF
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 269 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 328
N+ K VI+WT++IAGL L+ EAL F +M +KPN +T IA LSAC +G +
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALM 506
Query: 329 LGR 331
G+
Sbjct: 507 CGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 9e-53
Identities = 109/387 (28%), Positives = 188/387 (48%), Gaps = 47/387 (12%)
Query: 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILY 64
G+ N +LS F+ G +A+ +F + D++ +N + + A+ LY
Sbjct: 120 GVRLGNAMLSMFV----RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 65 NKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC 124
+++ + +RPD Y+FP VL+ + + GRE+H V G + DV VV ALI MY C
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235
Query: 125 KCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAG 184
GD+ +AR +F+ M ++ ISW +I+G
Sbjct: 236 ---------------------------------GDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 185 YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 244
Y + + E + LF M+ +V PD + + + +SAC LG LG +H Y+ + G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 245 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304
V + N+LI MY G G+A +VF M+ K ++WT MI+G +GL +AL+ ++ ME+
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 305 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY----GCMIDLLGRA 360
V P+EIT ++LSAC +G +++G + + Y +I++ +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 361 GYLQEAEKLLRRMPFEANAAIWGSLLA 387
+ +A ++ +P E + W S++A
Sbjct: 438 KCIDKALEVFHNIP-EKDVISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 48/288 (16%)
Query: 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252
+A+ L MQ V DE A +A C AVE G + + + V L NA++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI 312
M+ + G++ A VF M + + +W ++ G A G EAL ++ RM A V+P+
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 313 TFIAILSACCHVGLVELGR-RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371
TF +L C G+ +L R R + R+G E ++ +I + + G + A +
Sbjct: 189 TFPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 372 RMP----FEANAAIWG------------------------------SLLAASNIYGDVEL 397
RMP NA I G S+++A + GD L
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 398 GECALQHLIK------LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439
G +++K + NS L +Y LG W E+ K+ M
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Query: 215 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK 274
A + AC L ++ + ++ ++E G + N ++ M+ K G + A ++F+ M +
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334
++ +W T+I GL G REA +F M TF+ +L A +G G++
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ-L 246
Query: 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGD 394
+ + G+ +ID+ + G +++A + MP E W S+LA ++G
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGY 305
Query: 395 VELGECALQHL 405
E C +
Sbjct: 306 SEEALCLYYEM 316
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 63/343 (18%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLG-----FSDYAYSIFTHKS-KPDVYLYNTTIKALCQT 54
M+ G++ N H ID C+ G F AY I K+ KPD ++N I A Q+
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFG--AYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 55 DNPLNA--VILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH 112
A V+ K + + PD+ + ++KA ++ +E++
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY------------- 602
Query: 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNV----AVWNTMVAGYAKVGDLNNARALFE 168
QM + +N+ V+ V ++ GD + A ++++
Sbjct: 603 ------QM------------------IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 169 LMTEKNV----ISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222
M +K V + ++ L+ AG+A ++A + + + + +K ++ + + AC+
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 223 LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV----IT 278
+ ++ I+ L V NALI + ++ KAL+V MK + IT
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321
++ ++ LD+ S+ + +KPN + I C
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 58/269 (21%), Positives = 116/269 (43%), Gaps = 14/269 (5%)
Query: 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLF 198
NV + ++ G A+ G + A + +M KNV + + LI+ Q + A +
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 199 RRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 256
M+ E + PD I + A + ACA G V+ + ++ I +Y + + ++ +
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 257 KSGKIGKALQVFENMKNKSVITWTTMIAGL---ALH-GLGREALDMFSRMERARVKPNEI 312
+ G AL ++++MK K V + L A H G +A ++ + +K +
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLL-- 370
++ +++ AC + + + +KS + P + +I L L +A ++L
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 371 -RRMPFEANAAIWGSLLAASNIYGDVELG 398
+R+ N + LL AS D ++G
Sbjct: 745 MKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 61/248 (24%), Positives = 113/248 (45%), Gaps = 42/248 (16%)
Query: 147 WNTMVAGYAKVGDLNNARALFELM-------TEKNVISWTTLIAGYAQMDQPNEAITLFR 199
+ T+++ AK G ++ A+FE+ E NV ++ LI G A+ Q +A +
Sbjct: 475 YTTLISTCAKSGKVD---AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 200 RMQVENVKPDEIAMLAALSACAQLGAV--------ELGEWIH----NYIEQYGLNTIVPL 247
M+ +NVKPD + A +SAC Q GAV E+ H ++I G
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVG------- 583
Query: 248 NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE-----ALDMFSRM 302
AL+ A +G++ +A +V++ + + I T + +A++ ++ AL ++ M
Sbjct: 584 --ALMKACANAGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362
++ VKP+E+ F A++ H G ++ + + GI+ Y L+G
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYS---SLMGACSN 696
Query: 363 LQEAEKLL 370
+ +K L
Sbjct: 697 AKNWKKAL 704
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 274 KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 323
V+T+ T+I G G EAL +F+ M++ +KPN T+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 272
ML +S CA ++ + +++ GL L LI AKSGK+ +VF M
Sbjct: 442 ML--MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 273 NK----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 328
N +V T+ +I G A G +A + M VKP+ + F A++SAC G V+
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 329 LGRRYFNI---MKSR-YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373
R F++ MK+ + I+P G ++ AG + A+++ + +
Sbjct: 560 ---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI 211
+V+++ TLI GY + + EA+ LF M+ +KP+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEK----NVISWTTLIAGYAQ 187
+V +NT++ GY K G + A LF M ++ NV +++ LI G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 249 NALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLA 287
N LID Y K GK+ +AL++F MK + +V T++ +I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE 311
+T+ T+I GL G EAL++F M+ ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 277 ITWTTMIAGLALHGLGREALDMFSRMERARV 307
+T+ ++I+G G EAL++F M+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 210
+++ TLI G + + EA+ LF+ M+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENV 206
+++ +LI+GY + + EA+ LF+ M+ + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355
P+ +T+ ++ C G VE + FN MK R GI+P + Y +ID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 146 VWNTMVAGYAKVGDLNNARALFELMTEKNV 175
+N++++GY K G L A LF+ M EK V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK 88
PDV YNT I C+ A+ L+N+++ ++P+ Y++ ++ + K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 260 KIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRME-RARVKPNEITFIAIL 318
K ++ + KS ++ + I L G REAL++F +E T+ A++
Sbjct: 71 SESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALV 130
Query: 319 SACCHVGLVELG--RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376
AC + L + + + ++S G EP ++ + + G L +A +L MP E
Sbjct: 131 EAC--IALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-E 186
Query: 377 ANAAIWGSLL 386
N A WG+++
Sbjct: 187 RNLASWGTII 196
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 249 NALIDMYAKSGKIGKALQVFENMKNKSV 276
N+LI Y K+GK+ +AL++F+ MK K V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 208
+ ++ L+ A+ P+ A+ + M+ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.95 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.86 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.85 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.8 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.56 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.44 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.15 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.06 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.89 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.75 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.67 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.56 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.56 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.53 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.52 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.51 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.37 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.06 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.95 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.76 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.53 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.48 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.46 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.35 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.28 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.26 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.26 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.2 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.9 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.82 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.58 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.47 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.4 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.14 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.92 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.91 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.76 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.58 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.5 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.21 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.17 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.11 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.76 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.58 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.57 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 93.45 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 93.43 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.88 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.65 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.38 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.38 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.3 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.42 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.4 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.29 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.86 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.8 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.78 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.77 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.67 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.66 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.16 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.99 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.97 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.59 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.26 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 89.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.13 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.08 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.07 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.85 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.75 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.32 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 88.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.05 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.36 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.26 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.63 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 86.59 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.14 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.59 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 85.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.36 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.09 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.52 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.4 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 84.13 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.97 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.35 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.22 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.1 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.04 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.16 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.94 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.61 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.39 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 81.3 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.27 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.55 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.47 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.09 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=621.77 Aligned_cols=497 Identities=35% Similarity=0.647 Sum_probs=462.9
Q ss_pred CcccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
|++.|+.||+.++|.|+.+|++.|++++|.++|+.|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh----
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK---- 156 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~---- 156 (507)
.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|... |..+|++++.+|++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--DAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeeeHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999888653 55555555555555
Q ss_pred ------------------------------------------------------------------cCCHHHHHHHHHhc
Q 010575 157 ------------------------------------------------------------------VGDLNNARALFELM 170 (507)
Q Consensus 157 ------------------------------------------------------------------~~~~~~A~~~~~~~ 170 (507)
.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 55555555555555
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 010575 171 TEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 171 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 556667777777777777777788888888865 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
|+.+|++.|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 331 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+...+++++++|
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 99999999777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAE 490 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 490 (507)
+++..|..|+++|.+.|+|++|.++.+.|.+.|+++.||++|+++++.+|.|..++.+||+..+|+..|+++..+|++.|
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccc
Q 010575 491 HLQNEFSGVLE 501 (507)
Q Consensus 491 ~~~~~~~~~~~ 501 (507)
|.|++..++|+
T Consensus 769 ~~~~~~~~~~~ 779 (857)
T PLN03077 769 LAGSESSSMDE 779 (857)
T ss_pred cCCCcchhccc
Confidence 99998877754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-77 Score=605.03 Aligned_cols=495 Identities=28% Similarity=0.497 Sum_probs=473.3
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCC----CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS----KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
++.||..+|+.++.+|++.++++.|.+++..|. .||..+||.++..|++.|+++.|.++|++|.+ ||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 478899999999999999999999988888775 38888999999999999999999999999864 8889999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhcC
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~ 158 (507)
.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+... .||..+|++++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999988888766 568999999999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 159 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 318 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 318 (507)
.|+.||..++++|+.+|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+.+.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999877999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQI 478 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
..++++++++.|++...|..|+.+|.+.|+|++|.+++++|.+.|+.+.||++|+++++.+|.|..++..||...+++..
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCCCccccccc
Q 010575 479 LCKINGQMKFAEHLQNEFSGVLESD 503 (507)
Q Consensus 479 l~~~~~~~~~~g~~~~~~~~~~~~~ 503 (507)
+.++..+|++.||.|++..++|+.+
T Consensus 594 l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 594 LDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HHHHHHHHHHcCCCCCcchhhcccc
Confidence 9999999999999999999887654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=498.63 Aligned_cols=479 Identities=14% Similarity=0.208 Sum_probs=345.5
Q ss_pred cccCC-CCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 2 IVRGL-DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 2 ~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
.+.|+ +++..+++.++..|++.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34553 56666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhcC
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~ 158 (507)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777777777777777777777777777777655 567777777777777777
Q ss_pred CHHHHHHHHHhcC------CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010575 159 DLNNARALFELMT------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 232 (507)
Q Consensus 159 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 232 (507)
++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777774 3677777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 010575 233 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVK 308 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 308 (507)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777764 56677777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSL 385 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 385 (507)
||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.++++.| ++.||..+|+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777777777777777777777777765 77777777777777777777777777777777 567777777777
Q ss_pred HHHHHH----c-------------------CCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 386 LAASNI----Y-------------------GDVELGECALQHLIKL--EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~----~-------------------g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..|.+ . +..+.|..+|++|++. .|+ ..+|..++.++.+.+..+.+..+++.|.
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 755432 1 1235677777777553 344 5566666666667777777777777665
Q ss_pred hCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCC
Q 010575 441 DMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEF 496 (507)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 496 (507)
..+..+........+. +.... ..+... +.++|.+.|..|+..
T Consensus 875 ~~~~~~~~~~y~~Li~--------g~~~~--~~~A~~----l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 875 ISADSQKQSNLSTLVD--------GFGEY--DPRAFS----LLEEAASLGVVPSVS 916 (1060)
T ss_pred cCCCCcchhhhHHHHH--------hhccC--hHHHHH----HHHHHHHcCCCCCcc
Confidence 4443322111000000 00111 123344 455889999988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=510.64 Aligned_cols=435 Identities=31% Similarity=0.506 Sum_probs=361.3
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
++.|..++..++|.|+..|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+.+|++|...|+.||..||+.
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC---------------------
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--------------------- 140 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 140 (507)
++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|...
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99988888888888888888888888888888888888888888888887777777543
Q ss_pred -----------------------------------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010575 141 -----------------------------------------------VWNVAVWNTMVAGYAKVGDLNNARALFELMTEK 173 (507)
Q Consensus 141 -----------------------------------------------~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 173 (507)
.||..+|++++.+|++.|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 134455666666666788888888888888889
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 333 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 333 (507)
+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 5899999999999999998888888888
Q ss_pred HHHhHHhhCCCCChh------------------------------HHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHH
Q 010575 334 FNIMKSRYGIEPKIE------------------------------QYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAA 380 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 380 (507)
+..+.+. |+.++.. +|+.++.+|++.|+.++|.++|++| +..||..
T Consensus 512 ~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 512 HAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 8887765 6655544 4555555555555555555555555 3455555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
||+.++.+|.+.|++++|.++|+.|.+ +.|+ ..+|..++++|.+.|++++|.+++++|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 555555555555555555555555542 2233 445555555555555555555555555
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-62 Score=495.45 Aligned_cols=440 Identities=17% Similarity=0.232 Sum_probs=410.9
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
.||..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 39999999999999999999999999999864 89999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC----CCChhhHHHHHHHHHhcC
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR----VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~li~~~~~~~ 158 (507)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|... .||..+|++++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999752 689999999999999999
Q ss_pred CHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 159 DLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 159 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999985 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999995 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----c-------------------CCHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----A-------------------GYLQEAE 367 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~ 367 (507)
..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..|.+ + +..++|.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 999999999999999999999999999987 999999999999876432 1 2246799
Q ss_pred HHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 368 KLLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 368 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.+.+..+|..|++.+.+. .++|..++++|...|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999 789999999999987788889999988888773 34556688999999987432 368999999999999
Q ss_pred CccCCc
Q 010575 444 VKKMPG 449 (507)
Q Consensus 444 ~~~~~~ 449 (507)
+.+...
T Consensus 911 i~p~~~ 916 (1060)
T PLN03218 911 VVPSVS 916 (1060)
T ss_pred CCCCcc
Confidence 976654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=457.76 Aligned_cols=399 Identities=20% Similarity=0.325 Sum_probs=382.2
Q ss_pred CcccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
|.+.|+.||+.+|+.|+..|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCH
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 160 (507)
.++.+|++.|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|... |..+|++++.+|++.|++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK--TTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 161 NNARALFELMT----EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 161 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
++|.++|++|. .||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|..+|+.|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999995 58999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH
Q 010575 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNE 311 (507)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~ 311 (507)
. .+|..+|+++|.+|++.|+.++|.++|++|.+ ||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6 57899999999999999999999999999974 8999999999999999999999999999986 6999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
.+|+.++.+|++.|++++|.++++++ +..|+..+|++|+.+|...|+++.|..+++++ ...| +..+|..++..|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 99999999999999999999998876 67899999999999999999999999999988 5566 467999999999
Q ss_pred HHcCCHHHHHHHHHHHhccC
Q 010575 390 NIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+.|++++|.++++.|.+.+
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999996543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=274.36 Aligned_cols=419 Identities=12% Similarity=0.026 Sum_probs=193.1
Q ss_pred HHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHcc
Q 010575 13 LSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKL 89 (507)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 89 (507)
...++..|.+.|++++|.++++.+.. ++...|..+...+...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence 33444455555555555555554432 233445555555555555555555555554421 11233344444445555
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010575 90 STIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFE 168 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (507)
|++++|.+.++.+.+.++. +..++..+...+.+.|++++|...++++....| +...+..++..+...|++++|..+++
T Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555544322 344444555555555555555555555444433 33444445555555555555555555
Q ss_pred hcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 010575 169 LMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245 (507)
Q Consensus 169 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (507)
.+.+ .+...|..++..+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|..+++.+.+.. +.+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 4432 233444555555555555555555555554432 2233344444444555555555555555444432 2334
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..+..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|...|+++... .|+..++..++.++.
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHH
Confidence 4444444445555555555555444433 12334444444444444555555544444443 222233344444444
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
..|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++ . ..+++..+..+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 44444444444444443 22233444444444444444444444444444 1 11233344444444444444 33444
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++++++..|+++..+..++.++...|++++|.++++++.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=268.43 Aligned_cols=426 Identities=13% Similarity=0.024 Sum_probs=332.4
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLK 84 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 84 (507)
.+...+..+...+...|++++|.+.|+.... .+...+..++..+.+.|++++|..+++.+... .++++.++..+..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 473 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGA 473 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 3556677777888888888888888877543 23445666777888888888888888888763 3456677888888
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A 163 (507)
.+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++....| +..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888776533 556677788888888888888888888877766 667788888888888888888
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 010575 164 RALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240 (507)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 240 (507)
...++++.. .+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888754 345567778888888888888888888887653 4566778888888888888888888888887765
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 317 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 317 (507)
+.+...+..+..+|...|++++|...|+++.+ .+..++..++..+...|++++|..+++.+.+.+ +++...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 44566777788888888888888888887764 345678888888888888888888888887764 4466677777
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 395 (507)
...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++ ....+...+..+...|...|+.
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888753 455567777888888888888888888877 2334666777888888888888
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 396 ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++|...|+++++..|+++.++..++.++.+.|+ ++|++++++....
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 888888888888888888888888888888888 7788888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-22 Score=211.10 Aligned_cols=427 Identities=15% Similarity=0.077 Sum_probs=294.0
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccH-----------------HHHHHHHHcCCCchHHHHHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLY-----------------NTTIKALCQTDNPLNAVILYNKI 67 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m 67 (507)
+.|+.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+.|++++|+..|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34677777888888888888888888887654 332221 22334677888888888888888
Q ss_pred HHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC---
Q 010575 68 QASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWN--- 143 (507)
Q Consensus 68 ~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--- 143 (507)
.+.+ +|+... ...........|+.++|.+.++.+.+..+. +...+..+...+...|++++|+..++++....+.
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7642 233211 111112223457888888888888887543 5667777888888888888888888876432110
Q ss_pred ------------------hhhH----------------------------------HHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 144 ------------------VAVW----------------------------------NTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 144 ------------------~~~~----------------------------------~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
...+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 011334556788888888888776
Q ss_pred C--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHH------------HHHHHHHhccCCHHHHHHHHHH
Q 010575 172 E--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAM------------LAALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~------------~~ll~~~~~~~~~~~a~~~~~~ 235 (507)
+ | +...+..+..++.+.|++++|+..|++..+...... ...+ ......+.+.|++++|...+++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 3 567778888888888888888888888876532211 1111 1223456677888888888888
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHH--------------------------------
Q 010575 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWT-------------------------------- 280 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~-------------------------------- 280 (507)
+.+.. +.+...+..+..+|...|++++|++.|+++.+ | +...+.
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 88765 44556666778888888888888888887664 2 222221
Q ss_pred ----------HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 281 ----------TMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 281 ----------~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
.+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~ 531 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQ 531 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 2234455678999999999998876 34 45677778888999999999999999987531 223333
Q ss_pred HHHH--------------------------------------------HHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 010575 350 YGCM--------------------------------------------IDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 385 (507)
Q Consensus 350 ~~~l--------------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 385 (507)
+..+ ...+...|+.++|.++++.-+ +++..+..+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~L 609 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHH
Confidence 2222 233445566666666665332 344566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...+...|++++|+..|+++++..|+++.++..++.+|...|++++|++.++.+...
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888999999999999999999999999999999999999999999999999988654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-22 Score=213.28 Aligned_cols=411 Identities=13% Similarity=0.024 Sum_probs=328.7
Q ss_pred HHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc---cHH----------
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY---SFP---------- 80 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~---------- 80 (507)
...+...|++++|+..|++... .+...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHH
Confidence 4566788999999999988643 367788899999999999999999999988743 4322 121
Q ss_pred --HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhc
Q 010575 81 --FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKV 157 (507)
Q Consensus 81 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 157 (507)
.....+.+.|++++|...|+++++..+. +...+..+..++...|++++|++.|+++....| +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 1234567899999999999999988643 567788889999999999999999999998877 4566777777764 4
Q ss_pred CCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 010575 158 GDLNNARALFELMTEKN------------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 225 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 225 (507)
++.++|+..++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 67899999998776421 2235567778889999999999999998864 2355677788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCCh
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----SV---------ITWTTMIAGLALHGLG 292 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 292 (507)
+++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998764 344555555666678899999999999988642 11 1123456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 293 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|...|++++|.+.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 2445667778889999999999999999999973 345678899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 373 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG------NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 373 ~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
. ...| +...+..+..++...|++++|.++++++++..|+++. .+..++.++...|++++|++.+++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 3444 4556777888899999999999999999988776543 56677999999999999999999985
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-24 Score=192.37 Aligned_cols=384 Identities=14% Similarity=0.133 Sum_probs=326.1
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH-HHHHHHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH-VVAALIQ 119 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 119 (507)
.+|..+...+-..|++.+|+..|+.+.+ +.| ....|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 5688899999999999999999999998 446 46778899999999999999999999998864 4433 3344555
Q ss_pred HHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCChhHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~ 195 (507)
.+-..|++++|...|.+..+..| -...|+.|...+-..|+...|+..|++..+-|+ .+|-.|...|...+.+++|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 56668999999999999888877 467899999999999999999999999987544 67889999999999999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-- 273 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 273 (507)
..|.+..... +.....+..+...|-.+|.+|.|+..+++..+.. +.-...|+.|..++-..|+..+|...|.+...
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999987743 2345667777778899999999999999998775 34477899999999999999999999998875
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHH
Q 010575 274 -KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQY 350 (507)
Q Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 350 (507)
....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..+++.. .+.|+ ...|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHH
Confidence 34578899999999999999999999998874 554 3678899999999999999999999998 66777 5789
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+.+...|...|+.+.|.+.+.++ .+.|. ...++.|...|...|+..+|++.|+.++++.|+.+.++..++.++--..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999988 66664 45788999999999999999999999999999999999999988877777
Q ss_pred chHHHHHH
Q 010575 429 WNESGKIR 436 (507)
Q Consensus 429 ~~~A~~~~ 436 (507)
|.+--+-+
T Consensus 506 w~D~d~~~ 513 (966)
T KOG4626|consen 506 WTDYDKRM 513 (966)
T ss_pred ccchHHHH
Confidence 76643333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=190.33 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=333.1
Q ss_pred HHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
|.+-.-+.|++.+|++.-...-. | +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchH
Confidence 33444455666666654332211 1 1111112223344444454443332222221 122456788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVW-NTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
+.|+..++.+++..++ ....|..+..++...|+.+.|.+.|.+..+..|+.... +.+...+...|++++|...|.+..
T Consensus 133 ~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 9999999999987644 67889999999999999999999999999888855443 445556666899999999998877
Q ss_pred CCC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH
Q 010575 172 EKN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 172 ~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+.+ ..+|+.|...+...|+...|+..|++.++. .|+ ...|..+...|...+.++.|...+.+..... +....+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 533 367999999999999999999999999874 444 4578888999999999999999998887654 344667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 323 (507)
+..+...|...|.++.|+..|++..+ |+ ...|+.|..++-..|+..+|...+.+.... .| -..+.+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 77788889999999999999999876 33 369999999999999999999999999886 44 45788899999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 400 (507)
.|.++.|..+|....+ +.|. ...++.|...|-++|++++|+..|+++ .++|+. ..++.+...|...|+...|++
T Consensus 367 ~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999999985 3454 567889999999999999999999988 778864 589999999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.+.+++.++|.-..++..|+.+|...|+..+|+.-++...+-...
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999765544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-21 Score=196.41 Aligned_cols=391 Identities=13% Similarity=0.011 Sum_probs=291.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
+......+.+.|++++|+..|++.+. +.|++..|..+..++...|++++|...++..++..+. +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44556678888999999999999887 5688888888888899999999999999998887543 56778888899999
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------------C
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-----------------------------K 173 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------------------------~ 173 (507)
.|++++|+..|..+....+ +......++..+........+...++.-.. .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887766543322 111111111111111111222222211111 0
Q ss_pred Ch---hHHHHHHHH---HHhCCChhHHHHHHHHHhHCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 010575 174 NV---ISWTTLIAG---YAQMDQPNEAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245 (507)
Q Consensus 174 ~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (507)
+. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 00 011111111 123468999999999998765 233 34567777888889999999999999998764 3446
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..|..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6788889999999999999999998765 356789999999999999999999999998863 235677778888999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHHcC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-A-------IWGSLLAASNIYG 393 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g 393 (507)
+.|++++|+..|++.... .+.+...++.+...+...|++++|.+.|++. ...|+. . .++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999999863 3456788999999999999999999999986 333321 1 1122222334579
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++++|..+++++++++|++..++..++.++.+.|++++|+++|++..+
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999998999999999999999999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-19 Score=184.65 Aligned_cols=213 Identities=14% Similarity=0.032 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
+.++|...+....... |+......+...+...|++++|...|+.+.. ++...+..+...+.+.|++++|...+++.
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444443332 3333322334444577888888888776654 33445566677778888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHH
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 380 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 380 (507)
.+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++. ...| +..
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 7753 223333333444455668999999999988843 567888889999999999999999999988 4555 556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 778888889999999999999999999999999999999999999999999999999986443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-19 Score=182.84 Aligned_cols=400 Identities=10% Similarity=0.003 Sum_probs=224.6
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+.++....-.+......|+.++|+++|.+... .+...+..+...+...|++++|..+|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666677778888888888888877653 333457888888888888888888888877732 22355566677
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
..+...|++++|...+++.++..+. +.. +..+..++...|++++|+..++++....| +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 7778888888888888888877433 445 77778888888888888888888888877 45556667777777788888
Q ss_pred HHHHHHhcCCCChh--------HHHHHHHHHHh-----CCCh---hHHHHHHHHHhHC-CCCCCHH-HHH----HHHHHH
Q 010575 163 ARALFELMTEKNVI--------SWTTLIAGYAQ-----MDQP---NEAITLFRRMQVE-NVKPDEI-AML----AALSAC 220 (507)
Q Consensus 163 A~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~ 220 (507)
|++.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8888877665 211 11112222211 1123 5566666666543 1122211 110 112233
Q ss_pred hccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCh
Q 010575 221 AQLGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-------VITWTTMIAGLALHGLG 292 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 292 (507)
...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+.+ ......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4456666666666666655421 211 11223455666666666666666554321 12233444455566666
Q ss_pred HHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 293 REALDMFSRMERARV-----------KPNE---ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~-----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
++|..+++++..... .|+. ..+..+...+...|++++|+.+++++.. ..+.+...+..+...+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 666666665554310 1111 1223333444445555555555555543 22333444444455555
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 359 RAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|++++|++.++++ ...|+ ...+...+..+...|++++|+.+++++++..|+++
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555555544 22332 23333344444445555555555555555555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=182.37 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=201.7
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHhCC
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK-N------VISWTTLIAGYAQMD 189 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~ 189 (507)
...+...|++++|...|.++....| +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445667888888888888877766 4446666666667777777777776665531 1 134555666666666
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666665542 23445555555566666666666666555554432111000
Q ss_pred hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--h
Q 010575 270 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--I 347 (507)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 347 (507)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ .
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 249 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLS 249 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHH
Confidence 01123456666777788888888888877653 223456677778888888888888888888753 233 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH-
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI- 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 425 (507)
..+..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhc
Confidence 56777888888888899888888887 4567777778888888899999999999999988888865 44444444443
Q ss_pred --cCCchHHHHHHHHHHhCCCccCCc
Q 010575 426 --LGRWNESGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 426 --~g~~~~A~~~~~~~~~~~~~~~~~ 449 (507)
.|+.++++.+++++...++.+.|.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC
Confidence 558899999999998877777765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=181.85 Aligned_cols=329 Identities=12% Similarity=0.006 Sum_probs=208.8
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhc
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKV 157 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 157 (507)
...++..+.+.|+++.|..+++..+...+.+ ......++.+....|++++|...|+++....| +...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3344455556666666666666665554432 33333344445556666666666666665555 444555555666666
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 158 GDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
|++++|...+++..+ | +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 666666666666543 2 34456666666777777777777776665543222 2222222 23566677777777776
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE----ALDMFSRMERARV 307 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~ 307 (507)
.+.+....++......+..++...|++++|...|+...+ .+...+..+...+...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 666554223333344455666777777777777776654 244566677777788887775 788888887752
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHH-HHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI-WGSL 385 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l 385 (507)
+.+...+..+...+...|++++|+..++++... .+.+...+..+..++.+.|++++|...|+++ ...|+... +..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 224567778888888888888888888888753 2334566677788888888888888888877 34565433 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..++...|+.++|...|+++++..|++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 6677888888888888888888888753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=180.19 Aligned_cols=295 Identities=11% Similarity=0.043 Sum_probs=180.9
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCK 125 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 125 (507)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34556677888888888877743 22344666777777778888888888777776532221 245666777777777
Q ss_pred ChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHhCCChhHHHH
Q 010575 126 CIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKN--------VISWTTLIAGYAQMDQPNEAIT 196 (507)
Q Consensus 126 ~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~ 196 (507)
++++|..+|+++....| +..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777766544 55666677777777777777777776665321 1133445556666677777777
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 010575 197 LFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K 274 (507)
Q Consensus 197 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~ 274 (507)
.|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|.+.|++++|...++.+.+ |
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777766543 2234455556666666666666666666666543222234455666666666666666666666543 3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhhCCCCChh
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH---VGLVELGRRYFNIMKSRYGIEPKIE 348 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 348 (507)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4444455666666666666666666666554 4566566555554442 34566666666666654 4444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-19 Score=185.07 Aligned_cols=395 Identities=9% Similarity=-0.008 Sum_probs=302.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
-.-.+......|+.++|+.+|....... +.+...+..+...+...|++++|...++..++..+. +...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445566788999999999999988622 234445888889999999999999999999887533 56677788899999
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
.|++++|...++++....| +.. +..+...+...|+.++|+..++++.+ | +...+..+...+...+..+.|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999998877 556 88889999999999999999999885 3 45566778888889999999999998
Q ss_pred HHhHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHc-CCCCchh-HH----HHHHHHHHhcC
Q 010575 200 RMQVENVKPDE------IAMLAALSACA-----QLGAV---ELGEWIHNYIEQY-GLNTIVP-LN----NALIDMYAKSG 259 (507)
Q Consensus 200 ~m~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~ 259 (507)
.... .|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 7654 2321 01122222222 22234 6788888888764 2223221 11 11133456779
Q ss_pred CHHHHHHHHHhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHH
Q 010575 260 KIGKALQVFENMKNKS---V-ITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.+
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999988642 2 122335778999999999999999987653211 13455667778899999999999
Q ss_pred HHHHhHHhhC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 333 YFNIMKSRYG----------IEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 333 ~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
.++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..++..+...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9999986310 1122 234556778899999999999999998 3334 66788899999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|++.++++++++|+++.++..++..+.+.|++++|..+++++.....
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999975443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-19 Score=178.37 Aligned_cols=346 Identities=12% Similarity=-0.002 Sum_probs=278.6
Q ss_pred HHccCChhHHHHHhccCCC------CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcH
Q 010575 20 CSSLGFSDYAYSIFTHKSK------PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIE 93 (507)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 93 (507)
+.+..+++.-.-.|..-++ .+..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 3456677766666665443 234456667788899999999999999998853 223445666667778899999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 94 LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.|...++.+.+..+. +...+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999998644 677888899999999999999999999998877 677888999999999999999999987753
Q ss_pred --C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 173 --K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 173 --~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
| +...+..+ ..+...|++++|...++.+++....++......+..++.+.|++++|...++.+.+.. +.+...+.
T Consensus 173 ~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred hCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 33344333 4488899999999999998876544455555666778899999999999999999875 55677888
Q ss_pred HHHHHHHhcCCHHH----HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 250 ALIDMYAKSGKIGK----ALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 250 ~l~~~~~~~~~~~~----A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
.+...|...|++++ |...|++..+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~ 329 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999986 7889988775 355788999999999999999999999999863 224567778888999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
..|++++|+..++.+... .|+. ..+..+..++...|++++|...|+++
T Consensus 330 ~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 330 QVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999864 4543 33444677889999999999999987
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-19 Score=175.93 Aligned_cols=392 Identities=10% Similarity=-0.025 Sum_probs=290.5
Q ss_pred HHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHcc
Q 010575 13 LSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKL 89 (507)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 89 (507)
+......|.+.|++++|++.|++... |+...|..+..++.+.|++++|+..++..++. .| +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44667788899999999999998653 77788999999999999999999999999884 45 455788888999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh-------------------------
Q 010575 90 STIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV------------------------- 144 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------------------------- 144 (507)
|++++|..-+......+...+... ..++..+........+...++.-....|..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999988876655432222211 111111111111122222222211111110
Q ss_pred -----hhHHHHHHH---HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH
Q 010575 145 -----AVWNTMVAG---YAKVGDLNNARALFELMTEK------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 210 (507)
Q Consensus 145 -----~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 210 (507)
..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 001111111 12246889999999988742 34578888899999999999999999998853 2235
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 211 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA 287 (507)
Q Consensus 211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 287 (507)
..|..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+...+ .+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 678888889999999999999999998875 55678888999999999999999999998875 34567888899999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-h-------HHHHHHHHHhh
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-E-------QYGCMIDLLGR 359 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~ 359 (507)
+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..|++.... .|+. . .++.....+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999998752 335678888999999999999999999998853 3321 1 12222233445
Q ss_pred cCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 360 AGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.|++++|.+++++. ...|+ ...+..+...+...|++++|+..|+++.++.+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 79999999999986 55554 45788899999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-18 Score=173.99 Aligned_cols=418 Identities=11% Similarity=0.005 Sum_probs=299.9
Q ss_pred hHHHHHHHHH--------HHccCChhHHHHHhccCCCC--CcccHHHH-HHHHHcCCCchHHHHHHHHHHHcCCCCCccc
Q 010575 10 NHLLSRFIDS--------CSSLGFSDYAYSIFTHKSKP--DVYLYNTT-IKALCQTDNPLNAVILYNKIQASALRPDNYS 78 (507)
Q Consensus 10 ~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 78 (507)
..++..+... |.+.+...++++ .....| +....... .+.|.+.|++++|+.++.++.+.+ +.+...
T Consensus 142 ~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~ 218 (987)
T PRK09782 142 DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAE 218 (987)
T ss_pred hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHH
Confidence 4455555554 666655555555 222223 33333444 788888899999999999998865 223344
Q ss_pred HHHHHHHHHc-cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC---CCChhhHHHHH---
Q 010575 79 FPFVLKAVVK-LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR---VWNVAVWNTMV--- 151 (507)
Q Consensus 79 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~li--- 151 (507)
...|..+|.. .++ +.+..+++. .+..+......++..|.+.|+.++|.++++++... .|...+|.-++
T Consensus 219 ~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 219 RRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred HHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 5566666666 366 777666443 23357778888889999999999999888887655 22222222111
Q ss_pred ---------------------------HHHHh------------------------------------------------
Q 010575 152 ---------------------------AGYAK------------------------------------------------ 156 (507)
Q Consensus 152 ---------------------------~~~~~------------------------------------------------ 156 (507)
..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 11111
Q ss_pred ---------------cCCHHHHHHHHHhcCC-------------------------------------------------
Q 010575 157 ---------------VGDLNNARALFELMTE------------------------------------------------- 172 (507)
Q Consensus 157 ---------------~~~~~~A~~~~~~~~~------------------------------------------------- 172 (507)
.|+.++|.++|+....
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 5566666666655432
Q ss_pred -------------------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010575 173 -------------------K--NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEW 231 (507)
Q Consensus 173 -------------------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 231 (507)
+ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 0 12233334444443 5666777766666654 3555544445555678999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCC
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTT---MIAGLALHGLGREALDMFSRMERARVK 308 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~ 308 (507)
.++.+... +|+...+..+..++.+.|+.++|...|+...+.++..... +.......|++++|...+++..+. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 4444556677888999999999999999887654333333 333444569999999999999985 5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 386 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 386 (507)
|+...+..+..++.+.|++++|+..+++.... .+.+...+..+..++...|++++|++.++++ ...| +...+..+.
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 67888999999999999999999999999863 3445778888999999999999999999988 4455 667899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.++...|++++|+..+++++++.|++..+....++...+..+++.|.+.+++....++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999998888765444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-17 Score=163.02 Aligned_cols=420 Identities=10% Similarity=0.000 Sum_probs=309.7
Q ss_pred HHHHccCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH-HH--HHHHHccCC
Q 010575 18 DSCSSLGFSDYAYSIFTHKSK--PDVY-LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP-FV--LKAVVKLST 91 (507)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l--~~~~~~~~~ 91 (507)
-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+...+. .+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence 344688999999999998775 4321 233888888889999999999999873 4333333 33 456778899
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 92 IELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
+++|.++++++.+..+. +...+..++..+...++.++|++.++++....|+...+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999998755 56777788899999999999999999999998876666555555555667766999999988
Q ss_pred C--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH------HHHHHHHH-----hccCCH---HHHHHHHH
Q 010575 172 E--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA------MLAALSAC-----AQLGAV---ELGEWIHN 234 (507)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~ 234 (507)
+ | +...+..+..++.+.|-...|.++.++-... +.+...- ....++.- ....++ +.|..-++
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 5 4 4567788888999999999998777653321 1121111 11111110 112233 33444444
Q ss_pred HHHHc-CC-CCchh----HHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 235 YIEQY-GL-NTIVP----LNNALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 235 ~~~~~-~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.+... +- ++... ...-.+-++...|+..++++.|+.+... ...+-..+..+|...+++++|+.+++++..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44432 11 22212 2223455678889999999999999853 334667789999999999999999999876
Q ss_pred CC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC----------CCCCh---hHHHHHHHHHhhcCCHHHH
Q 010575 305 AR-----VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG----------IEPKI---EQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 305 ~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~~~A 366 (507)
.. ..++......|..++...+++++|..+++.+.+... -.|++ ..+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 42 122333457888999999999999999999986311 01221 2344567778899999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 367 EKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 367 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
++.++++ ...| |......+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|++|.++.+.+....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999998 3344 788889999999999999999999999999999999999999999999999999999998886443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-17 Score=158.48 Aligned_cols=429 Identities=11% Similarity=0.059 Sum_probs=280.7
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCCCC------cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccH-
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPD------VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSF- 79 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~- 79 (507)
+.+|.+.+.|.+.|-..|+.+.+..+.+.+...+ ..+|-.+.+++-..|+++.|...|.+..+. .||.+.+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 3466677777777777777777777766554321 234666777777777777777777666553 3444333
Q ss_pred -HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 80 -PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK----CIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 80 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
.-|...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.....| |...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 335566677777777777777777664 225556666666666654 45666666666666655 66666666665
Q ss_pred HHhcCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC---CCCCCH------HHHHHH
Q 010575 154 YAKVGDLNNARALFELMT--------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE---NVKPDE------IAMLAA 216 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l 216 (507)
+-...-+.. +..|.... ...+...|.+...+...|+++.|...|...... ...++. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 554433332 44443332 245566777777777888888888777776554 112222 122334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH
Q 010575 217 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 293 (507)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 293 (507)
....-..++.+.|.+.|..+.+.. +.-+..|-.++......++..+|...+....+ .++..|+.+...+.....+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 445556667777777777777653 21122333333222233566777777776654 46677777777888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 294 EALDMFSRMERA-RVKPNEITFIAILSACCH------------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 294 ~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+ ..+-|...-+.+.-.+...
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 887766665542 123566666666665542 2456778888888875 3355667777888888899
Q ss_pred CCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 361 GYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL--EPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 361 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
|++.+|..+|.+. .......+|..+...|...|++-.|+++|+..++. ..+++.+...|+.++.+.|++.+|.+..
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999887 22335567888999999999999999999998653 2346778889999999999999999988
Q ss_pred HHHHhC
Q 010575 437 KVMRDM 442 (507)
Q Consensus 437 ~~~~~~ 442 (507)
......
T Consensus 740 l~a~~~ 745 (1018)
T KOG2002|consen 740 LKARHL 745 (1018)
T ss_pred HHHHHh
Confidence 777543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-16 Score=155.09 Aligned_cols=387 Identities=12% Similarity=0.022 Sum_probs=284.2
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 50 ALCQTDNPLNAVILYNKIQASALRPDN--YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|...+++..... .........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 457899999999999999984 4664 234 78888889999999999999987221 22333444446789999999
Q ss_pred HHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHHHHHHhHC
Q 010575 128 YDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITLFRRMQVE 204 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~ 204 (507)
++|.++|+++.+..| +...+..++..+...++.++|++.++++...++. .+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999999988 6677788889999999999999999999875443 4433333444466666699999999997
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH------HHHHHHHH---H--hcCC---HHHHHHHHHh
Q 010575 205 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL------NNALIDMY---A--KSGK---IGKALQVFEN 270 (507)
Q Consensus 205 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~A~~~~~~ 270 (507)
. +.+...+..+..++.+.|-...|.++...-.+.- .+.... ...++..- . ...+ .+.|..-++.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4 3456677888889999998888887765432111 111000 00111000 0 1112 2334444444
Q ss_pred cCC-----CCh-h----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 271 MKN-----KSV-I----TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 271 ~~~-----~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
+.. |.. . ..--.+-++...|++.+++..++.+...|.+.-..+-..+..+|...+.+++|+.+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 432 211 1 122345678889999999999999998886545567788999999999999999999999764
Q ss_pred hC----CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCC--------------CCCH--H-HHHHHHHHHHHcCCHHHHH
Q 010575 341 YG----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF--------------EANA--A-IWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 341 ~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~--~-~~~~l~~~~~~~g~~~~A~ 399 (507)
.+ .+++......|..+|...+++++|..+++++.. .||+ . ....++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 123444457889999999999999999998821 1222 2 2344566788999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.++++....|.|+.....+++++...|...+|.++++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-16 Score=148.10 Aligned_cols=404 Identities=10% Similarity=0.012 Sum_probs=250.5
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCC--CCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALR--PDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
.|+...+.|...|...|++..++.+...+...... .-..+|-.+.+++-..|++++|...|.+..+.....-...+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 34555666666666666777776666666553210 1123355566666667777777777666655433222333445
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhC
Q 010575 117 LIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVG----DLNNARALFELMTEK---NVISWTTLIAGYAQM 188 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 188 (507)
|.+.|.+.|+++.+...|+.+....| +..+...+...|...+ ..+.|..++.+..++ |...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 56667777777777777777666655 4455555555555553 445555565555543 344555555554444
Q ss_pred CChhHHHHHHHHH----hHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCC------chhHHHHHHHHH
Q 010575 189 DQPNEAITLFRRM----QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY---GLNT------IVPLNNALIDMY 255 (507)
Q Consensus 189 ~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~ 255 (507)
.-+.. +..|... ...+-.+.....+.+...+...|+++.|...|...... ...+ ++.+--.+..++
T Consensus 428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 33332 5544433 23343455666777777777777777777777766554 1122 222233355556
Q ss_pred HhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
-..++.+.|.+.|..+.+..+ ..|..++......+...+|...+++..... ..++..+..+...+.....+..|..
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 666777777777777766322 234444433334567778888887776542 3344455555556777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhh------------cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGR------------AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
-|..+.++....+|+.+.-+|.+.|.+ .+..++|+++|.++ ...| |...-+.+...++..|++.+|
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHH
Confidence 666666553444666666666665542 35577888888876 4444 666677777788888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..+|.++.+-..+.+.+|.+++.+|..+|+|-.|++.|+...+.-.
T Consensus 666 ~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 666 RDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988776666678899999999999999999999988864443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=134.86 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC----CCcccH-HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc--c----cH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLY-NTTIKALCQTDNPLNAVILYNKIQASALRPDN--Y----SF 79 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~----~~ 79 (507)
.+...|.+-|.-.....+|+..++-+.+ ||.-.. -.+-..+.+.+++..|++.|...+.. .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 3445566666677777888887776654 333221 22334566777788888888777663 3332 2 23
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--------------CCChh
Q 010575 80 PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--------------VWNVA 145 (507)
Q Consensus 80 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~p~~~ 145 (507)
+.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++..-|+-++..+.|.+|... .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 33334456788888888888887765 355555445555666678888888888777543 12222
Q ss_pred hHHH-----HHHHHHhcC--CHHHHHHHHHhcCC----CChh---HH----------H--------HHHHHHHhCCChhH
Q 010575 146 VWNT-----MVAGYAKVG--DLNNARALFELMTE----KNVI---SW----------T--------TLIAGYAQMDQPNE 193 (507)
Q Consensus 146 ~~~~-----li~~~~~~~--~~~~A~~~~~~~~~----~~~~---~~----------~--------~li~~~~~~~~~~~ 193 (507)
..+. .+.-.-+.+ +.++++-.--++.. |+-. -| . .-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 2221 122222211 12222222222222 2210 01 0 11235678888888
Q ss_pred HHHHHHHHhHCCCCCCHH---------------------HHHHH---------------HHHHhccCCHHHHHHHHHHHH
Q 010575 194 AITLFRRMQVENVKPDEI---------------------AMLAA---------------LSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 194 a~~~~~~m~~~~~~~~~~---------------------~~~~l---------------l~~~~~~~~~~~a~~~~~~~~ 237 (507)
|+++++.+.+..-+.-.. .|.-+ .+.....|++++|...+.+..
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 888887765543211111 11100 001123478888888888888
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
...-......|| +.-.+-..|++++|+..|-.+. ..+..+.-.+...|-...+..+|++++-+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 665444444444 3445677889999999887665 367777778888898899999999998877664 55678888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHH-HHc
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAAS-NIY 392 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~-~~~ 392 (507)
..|...|-+.|+-.+|.+++-.--. -++-+..+...|..-|....-+++|+.+|+++ -++|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999988765543 45667888888999999999999999999998 5789999999999877 678
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
|++++|..+++...+..|.+...+..|++++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999999988885
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-14 Score=139.05 Aligned_cols=358 Identities=15% Similarity=0.137 Sum_probs=243.3
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
+.+.-.|+++.|.+++.++++..+. +...|..|..+|-..|+.+++...+-.+....| |...|..+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344459999999999999988644 677888899999999999999888877766666 77888888888889999999
Q ss_pred HHHHHHhcCCCChh---HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHH
Q 010575 163 ARALFELMTEKNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML----AALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 163 A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~ 235 (507)
|.-.|.+..+.++. .+---+..|-+.|+...|...|.++.....+.|..-+. .++..+...++-+.|.+.++.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999888864433 33445677888899999999999888764322222222 233445555555666666665
Q ss_pred HHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 236 IEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 236 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
.... +-..+...++.++..|.+...++.|......+.. +|..-|..- -. ++ ..-..++. ...++.++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-~~~~~~~~--~~~~~s~~ 377 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-EEPNALCE--VGKELSYD 377 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-cccccccc--CCCCCCcc
Confidence 5542 2234455566677777777777776666554433 222211000 00 00 00000000 01123333
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSL 385 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 385 (507)
... ..+.-++......+....+....... ...| +...|.-+..+|.+.|++.+|+.+|..+ +...+...|..+
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 333 12223334444444444444444443 4333 5678899999999999999999999998 333467789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 452 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (507)
..+|...|.+++|++.|++++...|++..+...|+.++.+.|+.++|.+.++.+...+-+...++.|
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999987554444455544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-14 Score=129.52 Aligned_cols=388 Identities=14% Similarity=0.070 Sum_probs=256.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPD-NYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
+.....-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+++++.+--...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44555677889999999999999998 6688 777888888889999999988877777665422 2335555566777
Q ss_pred hcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH-------------------
Q 010575 123 SCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWT------------------- 179 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~------------------- 179 (507)
..|++++|+.=..-..-. +.+-.....++.-..+.--...+.+-+..-.. |++....
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 788887765322111000 11111111122111111111222222221111 2211111
Q ss_pred ----HHHHHHH--hCC---ChhHHHHHHHHHhHCC-CCC-----CH------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 180 ----TLIAGYA--QMD---QPNEAITLFRRMQVEN-VKP-----DE------IAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 180 ----~li~~~~--~~~---~~~~a~~~~~~m~~~~-~~~-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
.+..++- ..+ .+..|...+.+-.... ..+ |. .+.......+.-.|+.-.+..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1111111 011 2233333222211100 011 11 1111111123345778888888888888
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITF 314 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 314 (507)
....++ ..|--+..+|....+.++..+.|+...+ .|+.+|..-.+.+.-.+++++|..-|++.+.. .| +...|
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAY 431 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHH
Confidence 764333 3366677789999999999999998775 46678888888888899999999999999885 44 45677
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---------HHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---------AAIWGS 384 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~~ 384 (507)
..+.-+..+.+.+++++..|++.++ .++..+.+|+.....+..++++++|.+.|+.. ...|. +.+...
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 7777777889999999999999998 55667889999999999999999999999987 33333 222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..- -.+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 34899999999999999999999999999999999999999999998864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-15 Score=128.62 Aligned_cols=350 Identities=12% Similarity=0.126 Sum_probs=231.3
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
.+-++.++..+|..+|+-...+.|.+++++-.. -+..+||.+|.+-+-. .-.+++.+|.+..+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 355778999999999999999999999987543 5677888888764432 23788899999889999999999
Q ss_pred HHHHHHccCCcH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHhccc----C-----CC-Chhh
Q 010575 82 VLKAVVKLSTIE----LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYD-ARKVFDELSL----R-----VW-NVAV 146 (507)
Q Consensus 82 l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~-----~p-~~~~ 146 (507)
++.+.++.|+++ .|.+++.+|.+.|++|...+|..+|..+.+.++..+ |..++.++.. + .| +...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999999776 456888899999999999999999999988887754 4444444432 2 23 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHH
Q 010575 147 WNTMVAGYAKVGDLNNARALFELMTE--------KN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 215 (507)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 215 (507)
+...+..|....+.+-|.++-.-+.. ++ ..-|..+....++....+.-...|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 77888888888898888887766653 11 23456677778888889999999999988878889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHH
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGRE 294 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 294 (507)
++++....+.++-.-.++..++..|...+......++..+++..- .|+...-..+-...++. -++.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888765554444444444444331 01101000000000000 00111
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH---HHHHHHhhcCCHHHHHHHH
Q 010575 295 -ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG---CMIDLLGRAGYLQEAEKLL 370 (507)
Q Consensus 295 -A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 370 (507)
....-.+|.+..+ .....+.++..+.+.|..++|.+++..+.+...-.|.....+ -+++.-.+......|...+
T Consensus 507 ~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 1111222333322 233344444455566666666666666644323333333333 3444445556666666666
Q ss_pred hhC
Q 010575 371 RRM 373 (507)
Q Consensus 371 ~~~ 373 (507)
+-|
T Consensus 585 Q~a 587 (625)
T KOG4422|consen 585 QLA 587 (625)
T ss_pred HHH
Confidence 655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-15 Score=129.97 Aligned_cols=392 Identities=13% Similarity=0.077 Sum_probs=273.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH-HHHHHHccCCcHHHHHHHHHHHHcCCCCcH----HHHHHHHHH
Q 010575 46 TTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF-VLKAVVKLSTIELGREIHCQTVGTGLDSDV----HVVAALIQM 120 (507)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 120 (507)
.|..-|..+....+|+..|+-+.+...-|+.-.... +.+.+.+.+++.+|.++++..+..-+..+. .+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344566677778899999999888777777655433 345678888999999999988876544333 344555557
Q ss_pred HHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC----------------CChhHHHHHH--
Q 010575 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE----------------KNVISWTTLI-- 182 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~li-- 182 (507)
+.+.|+++.|+..|+...+..|+..+-..|+-++...|+-++..+.|.+|.. |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 8899999999999999999999888766677777778999999999999873 1222222111
Q ss_pred ---HHHHhCC--ChhHHHHHHHHHhHCCCCCCHH-------------HHH--------HHHHHHhccCCHHHHHHHHHHH
Q 010575 183 ---AGYAQMD--QPNEAITLFRRMQVENVKPDEI-------------AML--------AALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 183 ---~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-------------~~~--------~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
.-.-+.+ +.++++-.--++...-+.|+.. .+. .-..-+.+.|+++.|.+++.-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 1222222222222222223211 000 1122467899999999999887
Q ss_pred HHcCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHHhcCCCChhHHH
Q 010575 237 EQYGLNTIVPLNNALIDMY------------------------------------AKSGKIGKALQVFENMKNKSVITWT 280 (507)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (507)
.+.....-...-+.|-..+ ...|++++|.+.|++....|...-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 7654322221111111111 1247888888888888887765444
Q ss_pred HH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 281 TM---IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 281 ~l---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
+| ...+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.|+.....|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 43 34567789999999999887654 344667777888889999999999999988875 5666789999999999
Q ss_pred hhcCCHHHHHHHHhh-CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 358 GRAGYLQEAEKLLRR-MPF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
-+.|+-.+|.+..-. ... ..+..+..=|..-|....-.++|+.+|+++--+.|+-...-..++.++.+.|++..|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999986543 332 236666666677777888889999999999999999666666677788899999999999
Q ss_pred HHHHH
Q 010575 436 RKVMR 440 (507)
Q Consensus 436 ~~~~~ 440 (507)
++.+-
T Consensus 683 yk~~h 687 (840)
T KOG2003|consen 683 YKDIH 687 (840)
T ss_pred HHHHH
Confidence 99885
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=149.64 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=112.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
.+...+.+.|++++|+++++.......+|+... +..+...+...++++.|...++.+...+. .+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 346667788888888888865544432344333 34445566677888888888888887653 355566667776 688
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
+++++|.+++....+ ++...+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888876644 456677778888999999999999999977543 34567778888889999999999999999
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 336 IMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
++.+. .| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99974 45 5778889999999999999988888776 123456678899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 413 SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+.+...+++++...|+.++|.++.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-12 Score=120.12 Aligned_cols=432 Identities=13% Similarity=0.064 Sum_probs=295.9
Q ss_pred HHHHHHccCChhHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHH----HHcCCCCCcccHHHHHHHHHc
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKS---KPDVYLYNTTIKALCQTDNPLNAVILYNKI----QASALRPDNYSFPFVLKAVVK 88 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~l~~~~~~ 88 (507)
|.-+|++...++.|.+++.+.. +.+...|.+-...--++|+.+...+++++- ...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3445677777888888876644 467788888887778889988888887764 345777888888877888888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 010575 89 LSTIELGREIHCQTVGTGLDSD--VHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
.|..-.+..+....+..|++.. ..||+.-.+.|.+.+.++-|..+|....+..| +...|......--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888887776532 35677777778888888888888887777766 56667777666666777777777
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 166 LFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 166 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
+|++... .....|-.....+-..|+...|..++.+..+.+ +.+...+...+..-.....++.|..+|.+.... .
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 7777654 233455555566666777777777777766654 235556666666666777777777777666543 4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV-ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
++..+|..-+....-.++.++|.+++++..+ |+. -.|..+.+.+-+.++.+.|.+.|..-.+. ++-....|..|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 5555555555555566677777777766655 222 35555666666666666666666554443 2223344445555
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C---------------------
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P--------------------- 374 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--------------------- 374 (507)
.-.+.|.+-.|..++++..- ..+-+...|...|.+=.+.|+.+.|..+..++ |
T Consensus 728 leEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 55555666666666666654 33445566666666666666666665554433 1
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010575 375 -------FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 447 (507)
Q Consensus 375 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (507)
...|+.....+...+.....+++|...|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.... ++.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~ 883 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPT 883 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCC
Confidence 34566666777778888889999999999999999999999999999999999988888999888643 455
Q ss_pred CceeEEEE
Q 010575 448 PGCSYIEV 455 (507)
Q Consensus 448 ~~~~~~~~ 455 (507)
.|..|..+
T Consensus 884 hG~~W~av 891 (913)
T KOG0495|consen 884 HGELWQAV 891 (913)
T ss_pred CCcHHHHH
Confidence 56556433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=120.85 Aligned_cols=352 Identities=11% Similarity=0.113 Sum_probs=227.3
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI 118 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (507)
.+..++..+|.++|+--..+.|..+|++......+.+..+||.+|.+-.-..+ .+++.+|......||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 45578999999999999999999999998887778899999999887643322 78889999999999999999999
Q ss_pred HHHHhcCChHHHH----HHHHhcccC--CCChhhHHHHHHHHHhcCCHHH-HHHHHHhcCC------------CChhHHH
Q 010575 119 QMYASCKCIYDAR----KVFDELSLR--VWNVAVWNTMVAGYAKVGDLNN-ARALFELMTE------------KNVISWT 179 (507)
Q Consensus 119 ~~~~~~g~~~~A~----~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~------------~~~~~~~ 179 (507)
.+..+.|+++.|. +++.+|++. .|+..+|..+|..+++.++..+ |..++..+.. .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999887655 455556555 6678888888888888777644 3333333321 2344555
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVEN----VKPD---EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
.-+..|.+..+.+-|.++-.-..... +.|+ ..-|..+....++....+.-...|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66666667777766666554443221 2222 1234555666667777777777777777666666666666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI---TFIAILSACCHVGLVEL 329 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~ 329 (507)
++..-.|.++-..+++..+..-+ ..-+.+--++++..|......|+.. -+.....-|+. ++.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e 506 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKE 506 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHH
Confidence 76666666666666665544321 1112222334444454444444332 22222221211 1211
Q ss_pred -HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 330 -GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 330 -a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
....-.++.+ ..-.....+...-.+.+.|+.++|.+++... +..|......-++.+-...++.-.|..+
T Consensus 507 ~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 507 AYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1222223332 2334556677778889999999999998765 3445444455666677788899999999
Q ss_pred HHHHhccCCC
Q 010575 402 LQHLIKLEPH 411 (507)
Q Consensus 402 ~~~~~~~~p~ 411 (507)
++-+...+-+
T Consensus 584 lQ~a~~~n~~ 593 (625)
T KOG4422|consen 584 LQLASAFNLP 593 (625)
T ss_pred HHHHHHcCch
Confidence 9998766544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-12 Score=120.30 Aligned_cols=413 Identities=12% Similarity=0.090 Sum_probs=332.3
Q ss_pred HccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHH
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGRE 97 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 97 (507)
......++|+-++....+ .+...|. ++++-.-++.|..+++..++ .++.++..|.+....=-.+|+.+.+.+
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 345667778888877554 3445554 44555778999999999987 467788888887777788999998888
Q ss_pred HHHHHH----HcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 98 IHCQTV----GTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
++++-+ ..|+..+..-|..=...+-..|..-.+..+.......+. -..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 877644 468888888888888888889998888888887766533 356899999999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 010575 170 MTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 170 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (507)
..+ .+...|...+..--..|..+....+|++.... ++-....+......+-..|+...|..++..+.+.. +.+..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 876 24466777777777789999999999999886 34455666667777888899999999999998876 44777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCH 323 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 323 (507)
++-.-+.....+..++.|+.+|.+... +....|..-+...--.++.++|+.++++..+. -|+- ..|..+.+.+-+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 888888889999999999999998875 56678877777777889999999999998886 4554 677888889999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.++.+.|...|..=.+ ..+-.+..|-.|...=.+.|++-+|..++++. +...+...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887665 45666788888888888999999999999998 3334778999999999999999999999
Q ss_pred HHHHhccCCCCC------------------------------chHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 402 LQHLIKLEPHNS------------------------------GNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 402 ~~~~~~~~p~~~------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..++++-.|++. ..+...+..+....+++.|.+.|.+..+.+.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999887666653 3556667777777788888888888765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-12 Score=124.81 Aligned_cols=428 Identities=15% Similarity=0.104 Sum_probs=300.9
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV 86 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 86 (507)
....-...+.+.-.|+.++|.+++.++.+ .+...|.+|...|-..|+.+++...+-..-.- .+-|...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 33333344444455999999999999765 46688999999999999999999877655442 234667788888888
Q ss_pred HccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--Chh----hHHHHHHHHHhcCCH
Q 010575 87 VKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW--NVA----VWNTMVAGYAKVGDL 160 (507)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~li~~~~~~~~~ 160 (507)
.+.|++.+|.-+|.+.++..++ +...+-.-+..|-+.|+...|...|.++....| |.. .--..+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999998644 555555667889999999999999999988866 222 233446677778888
Q ss_pred HHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH----------------------H
Q 010575 161 NNARALFELMTE-----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA----------------------M 213 (507)
Q Consensus 161 ~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------------------~ 213 (507)
+.|.+.++.... -+...++.++..|.+..+++.|......+......+|..- |
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 999999888764 2445788999999999999999999888876222222111 1
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHH
Q 010575 214 ----LAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMI 283 (507)
Q Consensus 214 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~ 283 (507)
--+.-++......+....+...+.... +.-+...|.-+..+|...|++.+|.++|..+.. .+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 122334455566666666666677666 344577888899999999999999999999886 3567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH-------hhCCCCChhHHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKS-------RYGIEPKIEQYGCMID 355 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~ 355 (507)
.+|...|..++|++.|+..+.. .|+ ...-..|...+.+.|+.++|.+.+..+.. ..+..|+........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999885 443 45566777788899999999999988531 1245555556666777
Q ss_pred HHhhcCCHHHHHHHHhhC-----------C--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 010575 356 LLGRAGYLQEAEKLLRRM-----------P--------------FEANAAIWGSLLAASNIYGDVELGECALQHL----- 405 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-----------~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 405 (507)
.+...|+.++-......| + ..-........+.+-.+.++..........-
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 788888887754443333 0 0112222233333333333322222211111
Q ss_pred hccCCCCC----chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 406 IKLEPHNS----GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 406 ~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
....--+. ..+.-++..+.+.|++++|+.+...+..
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~ 654 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALE 654 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 01111111 2345667788899999999999877753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-13 Score=118.66 Aligned_cols=327 Identities=13% Similarity=0.055 Sum_probs=241.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH-HHHHHH
Q 010575 106 GLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS-WTTLIA 183 (507)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~ 183 (507)
+...|...+-.....+.+.|....|+..|.......| .-..|..|... ..+.+.+..+.......+... =-.+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3444555554455566677888889988888877744 44444444333 334444443333333221111 112445
Q ss_pred HHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCH
Q 010575 184 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 184 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 261 (507)
++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 6666678888888888888888766666666666667788899999999999998742 13456666555 3433322
Q ss_pred HH---HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GK---ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~---A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.- |..++ .+.+--+.|..++..-|+-.++.++|...|++..+.+. -....|+.+..-|....+...|++.++.+.
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 21 22222 23333456777788889999999999999999998632 244678888889999999999999999999
Q ss_pred HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 339 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+ -.+.|-..|..|.++|.-.+...=|+-+|+++ ..+| |+..|.+|...|.+.++.++|+.+|.+++..+-.+..++
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6 34557899999999999999999999999998 5666 777999999999999999999999999998887778899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..|+.+|.+.++.++|..++++..+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-12 Score=112.64 Aligned_cols=414 Identities=14% Similarity=0.094 Sum_probs=306.4
Q ss_pred HccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHH
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGR 96 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~ 96 (507)
-+++++..|+++|+.... .+...|-..+..-.++.++..|..++++... +-|.+.- |-.-+..=-..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 456788889999988654 6777888888888999999999999999887 4454432 333333345689999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK--- 173 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 173 (507)
++|+.-.. .+|+...|++.|+.-.+...++.|..+|++..--.|++.+|......-.++|+...|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99998876 4789999999999999999999999999999888899999999999999999999999999887751
Q ss_pred ---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCCHHHHHHH--------HHHHHHcC
Q 010575 174 ---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWI--------HNYIEQYG 240 (507)
Q Consensus 174 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~ 240 (507)
+...+.+...--.++..++.|.-+|+-.++. ++.+ ...|......--+-|+....... ++..++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2234555555555677888999999888875 2222 23344444433444554433322 33333333
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHHH--------HHHHcCChHHHHHHHHHHHHCCC
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SV---ITWTTMIA--------GLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~~~~~l~~--------~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+.|-.+|-..+..-...|+.+...++|+..... .. ..|...|- .-....+.+.+.++++..++. +
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 667777777888888889999999999887642 11 12222221 112467888899999988874 4
Q ss_pred CCCHHHHHHHH----HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHH
Q 010575 308 KPNEITFIAIL----SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAI 381 (507)
Q Consensus 308 ~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 381 (507)
+....||..+= .-..++.++..|.+++..+. |.-|...++...|..=.+.++++....++++. ...| +-.+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 44445655333 23346788999999998888 88899999999999889999999999999987 5556 6678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|......-...|+.++|..+|+-+++...-+ ...|...++.-...|.++.|..+++.+.+...
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 8888888888999999999999987644222 23566777777888999999999999976544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=134.77 Aligned_cols=271 Identities=13% Similarity=0.049 Sum_probs=146.5
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010575 159 DLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIH 233 (507)
Q Consensus 159 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (507)
+..+|+..|.++++ + .......+..+|...+++++|.++|+...+.. ..-+...|.+.+-.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 44566666666443 1 22334445566666666666666666665532 112334555555433221 111111
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 234 -NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 234 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
+.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|+|+..|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 1222222 344556666666666666666666666665543 2345555655566666666666666655542 22
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHH
Q 010575 310 N-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSL 385 (507)
Q Consensus 310 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 385 (507)
. -..|..+...|.++++++.|+-.|+++.+ +.| +......++..+.+.|+.++|+.+++++ ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 2 23445555566666666666666666653 233 3344445555566666666666666665 2222 33333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+..+...+++++|...++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 444555666666666666666666666666666666666666666666655444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-12 Score=115.30 Aligned_cols=404 Identities=13% Similarity=0.086 Sum_probs=303.6
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
.|-....--...+++..|..+|++.+... .-+...|..-+..=.++..+..|..+++..+..=+..| ..|--.+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHH
Confidence 34333444455677889999999998743 23444566666666788899999999999988644433 34445555566
Q ss_pred hcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010575 123 SCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRR 200 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 200 (507)
..|++..|.++|++-.+-.|+...|.+.|+.-.+-+.++.|..++++.. .|++.+|--....-.+.|+...|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999876 58999999888888999999999999998
Q ss_pred HhHC-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------H
Q 010575 201 MQVE-N-VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQV--------F 268 (507)
Q Consensus 201 m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~--------~ 268 (507)
..+. | -..+...|.+...--.+...++.|.-++...++.- +.+ ...|..+...--+-|+....... |
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 8764 1 11122334444444455677888888998888763 222 34455555444455664444333 2
Q ss_pred HhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HH---HhccCcHHHHHHHHH
Q 010575 269 ENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAIL-----SA---CCHVGLVELGRRYFN 335 (507)
Q Consensus 269 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~-----~~---~~~~g~~~~a~~~~~ 335 (507)
+.+.+. |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|...| -+ -....|++.+.++|+
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333 4467888888888889999999999999876 55532 1121111 11 235689999999999
Q ss_pred HhHHhhCCCCChhHHHHHHHH----HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 336 IMKSRYGIEPKIEQYGCMIDL----LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
...+ -++....++..+--+ -.++.++..|.+++..+ +.-|...++...|..-.+.+++++...++++.++..|
T Consensus 391 ~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 391 ACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 9986 444455665544433 45789999999999887 7789999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 452 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (507)
.+..+|...+..-...|+++.|..+|+-..++.....|...|
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999998877766666655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=116.85 Aligned_cols=285 Identities=11% Similarity=0.033 Sum_probs=177.3
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCC
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGD 159 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~ 159 (507)
.++-.....+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++....| |..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34445556667777777777777766666666666666677888888888888887766 56666666544333222
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
+.---...-.+.+--+.|+..+.+-|.-.++.++|...|+..++.+ +.....++.+..-|....+...|..-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 2222222222333344566666677777777777777777777754 223445666666677777777777777777766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 316 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 316 (507)
. +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|+..|.+....| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 5 56667777777777777777777777766543 466677777777777777777777777776654 225566777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhh---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRY---GIEPK--IEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
|...|-+.++..+|.+.|++..+.. |...+ .....-|..-+.+.+++++|..+..
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7777777777777777776665421 11111 1112224444556666666655433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=128.92 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=138.4
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDEIAML--AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 263 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (507)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. +.+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5555566666666555542 23322111 22344555566666666665555554 3344555555566666666666
Q ss_pred HHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 010575 264 ALQVFENMKNKSV-----------ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 264 A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
|.+++..+.+... .+|..++.......+.+....+++.+.+. .+.++.....+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6655555554211 12222233333333444555555554332 23455666667777777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
++++..+. +|+.... ++.+....++.+++.+..++. +..| |+..+..+...|.+.|++++|.+.|+++++..|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77766642 3444222 223333457777777777666 3344 344566677777777777777777777777777
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 73 445677777777777777777776653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-13 Score=125.46 Aligned_cols=279 Identities=13% Similarity=-0.029 Sum_probs=197.7
Q ss_pred cCChHHHHHHHHhcccCCCChhhHHHH-HHHHHhcCCHHHHHHHHHhcCC--CChhHHH--HHHHHHHhCCChhHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVWNVAVWNTM-VAGYAKVGDLNNARALFELMTE--KNVISWT--TLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 198 (507)
.|++++|.+.+.......++...+..+ .....+.|+++.|...+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777776666654442222222222 3444667777777777776654 2322222 2245677777788887777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
+++.+.. +-+......+...|.+.|+++.+..++..+.+.+..++. ..|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 7777654 334556667777777778888888777777776643222 12233344344455566777777776
Q ss_pred CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh
Q 010575 272 KN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 348 (507)
Q Consensus 272 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 348 (507)
.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...++ .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 54 47778888999999999999999999998874 5555322 334445669999999999999874 355667
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+..+...+.+.|++++|.+.|+.+ ...|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999998 778999999999999999999999999999997643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-14 Score=131.92 Aligned_cols=246 Identities=13% Similarity=0.126 Sum_probs=159.4
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKIGKALQV 267 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 267 (507)
+.++|...|..... .+..+......+..+|...+++++|..+|+.+.+... -.+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45677777777333 3344445666677777777778888777777776531 12345555554332221111111111
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 268 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
+-.+....+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 11222345677777777777777788888877777764 44 55677777777777777777777777776 33332
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 347 -IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 347 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
-..|..+.-.|.++++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++-++|.++-.-...+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 244555666777778888887777777 5666 4445555666677777778888888888777777777777777777
Q ss_pred HHcCCchHHHHHHHHHHh
Q 010575 424 AILGRWNESGKIRKVMRD 441 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~ 441 (507)
...+++++|+..++++..
T Consensus 568 ~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE 585 (638)
T ss_pred HhhcchHHHHHHHHHHHH
Confidence 777888888777777753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-12 Score=123.04 Aligned_cols=118 Identities=14% Similarity=-0.011 Sum_probs=65.8
Q ss_pred hcCChHHHHHHHHhcccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--hHHHHHHHHHHhCCChhHHHHH
Q 010575 123 SCKCIYDARKVFDELSLRVWNVA-VWNTMVAGYAKVGDLNNARALFELMTE--KNV--ISWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~ 197 (507)
..|+++.|.+.+.+.....|+.. .+-.....+.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666666655544322 233334555556666666666655432 222 1222235556666666666666
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
++.+.+.. +-+......+...+...|+++.+...+..+.+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66666653 22444555666666666666666666666666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-11 Score=113.20 Aligned_cols=261 Identities=11% Similarity=0.022 Sum_probs=212.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 254 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (507)
+........-+...+++.+..++.....+.. ++....+..-|.++...|+..+-..+-..+++.- |....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3444455667788899999999999988764 4566666666778888888888777777777764 6667888899988
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 255 YAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
|.-.|+..+|++.|.+...-|. ..|-.+...|+-.|..++|+..+...-+. ++-....+-.+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998765433 68999999999999999999999887764 2222233344555688899999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP--------FEA-NAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++|.++.. -.+.|+...+-+.-.....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999984 334467778878777778899999999998761 111 3457888999999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++++.+.|.+..++..++-+|...|+++.|++.|.+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=134.17 Aligned_cols=253 Identities=15% Similarity=0.081 Sum_probs=66.6
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCH
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTG-LDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 160 (507)
...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...++ +...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444555555555553332222 122233333333444444555555555555544432 22233333333 344444
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 161 NNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 161 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++|.++++..-+ +++..+..++..+.+.++++++.++++...... .+.+...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443321 233444445555555555555555555544322 22344444555555555555555555555555
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
+.. |.+..+...++..+...|+.+++..++....+ .|...|..+..++...|+.++|+.+|++..+.. +.|+...
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 543 22344445555555555555554444433322 344455555555555566666666666555431 2244555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
..+..++...|+.++|.++.+++.
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT----------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555666666666655555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-12 Score=123.14 Aligned_cols=281 Identities=11% Similarity=0.032 Sum_probs=207.0
Q ss_pred HhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010575 155 AKVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEW 231 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 231 (507)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 458999999999988775 332 33445567788999999999999998775322222333445778889999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHH
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT----TMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.++.+.+.. |.+..+...+...|...|+++.|.+.+..+.+. +...+. ....+....+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999986 556778889999999999999999999998853 333232 111222333333444445555554
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHhhcCCHHHHHHHHhhC-CCCC
Q 010575 305 ARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM-PFEA 377 (507)
Q Consensus 305 ~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 377 (507)
... +.+...+..+...+...|+.++|.+++++..+. .|+... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 421 137788888999999999999999999999974 344331 111222233457888898888877 4444
Q ss_pred C-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 378 N-A--AIWGSLLAASNIYGDVELGECALQ--HLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 378 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+ + ....++...|.+.|++++|.+.|+ .+.+..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 3 567789999999999999999999 577788884 457799999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-11 Score=119.10 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=262.0
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY 77 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 77 (507)
...|+.|+..||.+++.-||..|+++.|- +|..|.- -+...++.++.+..+.++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 46799999999999999999999999998 8888764 35577999999999999888776 58889
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHH-------cCCC-CcH-------------HHHHHHHHHHHhcCChHHHHHHHHh
Q 010575 78 SFPFVLKAVVKLSTIELGREIHCQTVG-------TGLD-SDV-------------HVVAALIQMYASCKCIYDARKVFDE 136 (507)
Q Consensus 78 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~ 136 (507)
+|..|..+|...||+..-..+-+.+.. .|.. |.. ..-...+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987653332222221 1211 000 1112234445556778888888877
Q ss_pred cccCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHH
Q 010575 137 LSLRVWNVAVWNTMVAGYAK-VGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 214 (507)
Q Consensus 137 ~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 214 (507)
++....+.. ...+++-+.. ...+++-........+ +++.+|..++.+-..+|+.+.|..++.+|.+.|++.+.+-|-
T Consensus 165 ~Pvsa~~~p-~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 165 VPVSAWNAP-FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred CCcccccch-HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 665422111 1112332222 2334444444444444 788888888888888888888888888888888888877776
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-----------------------------
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL----------------------------- 265 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----------------------------- 265 (507)
.++-+ .++...+..++.-|...|+.|+..|+...+..+..+|....+.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 66644 7778888888888888888888887766555554433221111
Q ss_pred -----------------------------------------HHHHhcCC-------CChhHHHHHHHHHHHcC-------
Q 010575 266 -----------------------------------------QVFENMKN-------KSVITWTTMIAGLALHG------- 290 (507)
Q Consensus 266 -----------------------------------------~~~~~~~~-------~~~~~~~~l~~~~~~~~------- 290 (507)
++-..+.. .++..|..++.-|.+.-
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 00000000 01112222222221110
Q ss_pred ---------------ChHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHhccCcH
Q 010575 291 ---------------LGREALDMFSRMERARVKPNE----------------------------ITFIAILSACCHVGLV 327 (507)
Q Consensus 291 ---------------~~~~A~~~~~~m~~~g~~p~~----------------------------~~~~~l~~~~~~~g~~ 327 (507)
...+..++... ..||. ..-+.++..|++.-+.
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00011111110 01111 1112233333333333
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 328 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-----FEANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
.+++..-+..... - -...|..|++.+......+.|..+.++.. ...+..-+..+.....+.+....+..++
T Consensus 476 lK~l~~~ekye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 3333332222221 1 12567888999999999999999998883 3345566778888889999999999999
Q ss_pred HHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010575 403 QHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 403 ~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
+++.+ ..|........+.......|+.+.-.++.+-+...|+.-
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 98865 334444566677777788899999888888888777754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-11 Score=107.58 Aligned_cols=387 Identities=10% Similarity=0.003 Sum_probs=252.0
Q ss_pred HHHHHHHHccCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHcc
Q 010575 14 SRFIDSCSSLGFSDYAYSIFTHKSK--PD-VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKL 89 (507)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 89 (507)
....+-|-+.|++++|++.+..... |+ +.-|.....+|...|++++..+---..++ +.|+- ..+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445566788999999999998654 77 77788899999999999998887777666 44542 1233333455567
Q ss_pred CCcHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHh-cccCCCChhhHHHHHHHHHh-----------
Q 010575 90 STIELGREIHCQT-VGTGLDSDVHVVAALIQMYASCKCIYDARKVFDE-LSLRVWNVAVWNTMVAGYAK----------- 156 (507)
Q Consensus 90 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~li~~~~~----------- 156 (507)
|++++|+.=..-. +-.|+. |..+--.+=+.+-+.| ..++.+-+.. -...-|+.....+....+..
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 7777664221111 111111 1111111111111111 1112222220 00002222222222222211
Q ss_pred --------------c---CCHHHHHHHHHhcCC-----C-----C------hhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 157 --------------V---GDLNNARALFELMTE-----K-----N------VISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 157 --------------~---~~~~~A~~~~~~~~~-----~-----~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
. ..+..|...+.+-.. + | ..+.......+.-.|+.-.|..-|+....
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1 123333333322110 1 1 11222222334567889999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH
Q 010575 204 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT 280 (507)
Q Consensus 204 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 280 (507)
....++. .|.-+...|....+.++....|+...+.+ +.++.+|..-.+.+.-.+++++|..-|++...- ++..|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 6544333 27777888999999999999999999887 566777888888888889999999999988763 456777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---------hhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---------IEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~ 351 (507)
.+..+..+.+++++++..|++..+. ++--+..|+.....+..+++++.|.+.|+..++ +.|+ +.+..
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhh
Confidence 7777788899999999999999886 555678899999999999999999999999984 3343 22222
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+++..- -.+++..|..+++++ .+.| ....|..|...-.+.|+.++|+++|++...+...
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333222 348999999999998 5666 4568899999999999999999999998765443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-11 Score=104.82 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=167.9
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh------hHHHHHHHHHHhCCChhHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-KNV------ISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~a~ 195 (507)
+.+.++|...|-+|.+..| +..+.-+|.+.|-+.|..+.|+++-+.+.+ ||. .+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455666666666655533 333444555555555666666655555543 332 12334556667777777777
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS 275 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 275 (507)
.+|..+.+.+ .--......++..|-...++++|+.+-.++.+.+-++... .+...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqf--------------------- 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQF--------------------- 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHH---------------------
Confidence 7777776644 1233344555666666666666666666655554332211 11222
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
|.-+...+....+.+.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 183 ---yCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 183 ---YCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred ---HHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 233444555556677777777776664221 2233334555666777777777777777655 22223455666777
Q ss_pred HHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---HcCCchH
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA---ILGRWNE 431 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~ 431 (507)
+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|. ...+..+++... .-|.+.+
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhh
Confidence 777777777777777665 34445544555554444555566677777777777777 344444444332 2356788
Q ss_pred HHHHHHHHHhCCCccCC
Q 010575 432 SGKIRKVMRDMGVKKMP 448 (507)
Q Consensus 432 A~~~~~~~~~~~~~~~~ 448 (507)
.+..++.|....++..|
T Consensus 337 sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 337 SLDLLRDMVGEQLRRKP 353 (389)
T ss_pred hHHHHHHHHHHHHhhcC
Confidence 88888888766555444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-10 Score=101.70 Aligned_cols=275 Identities=13% Similarity=-0.001 Sum_probs=149.4
Q ss_pred CChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--C--hhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 125 KCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK--N--VISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 125 g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
|++.+|++...+-.+..+ ....|..-..+.-+.|+.+.+-.++.+..++ | ....-+........|++..|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 555555555544443332 2233333344444445555555554444432 1 2223334444455555555555555
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 200 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMK 272 (507)
Q Consensus 200 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 272 (507)
++.+.+. -+.........+|.+.|++.....++..+.+.+.-.+. .+++.+++-....+..+.-...++...
T Consensus 178 ~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 5554432 22333444445555555555555555555555433222 233334433333333333334444444
Q ss_pred C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 273 N---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 273 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ...-.+.+.++...-++..+.-.+.++. ++..
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L 330 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLL 330 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhH
Confidence 2 34555556666677777777777777777776655551 1222345666666666666666654333 3356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+..|...|.+.+.+.+|.+.|+.. +..|+..+|..+..++.+.|+.++|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666777777777777777777765 666777777777777777777777777777764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-11 Score=103.52 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=158.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCChHHH
Q 010575 54 TDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDS---DVHVVAALIQMYASCKCIYDA 130 (507)
Q Consensus 54 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 130 (507)
++++++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+.|.++.+.+.++.--+ -....-.|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887722 1233344566677778888888888887776642111 122344556667777777777
Q ss_pred HHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHHHhCCChhHHHHHHHHH
Q 010575 131 RKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--------SWTTLIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 131 ~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m 201 (507)
+.+|..+.+. ..-......|+..|-...+|++|+++-+++.+.+.. .|.-|...+....+.+.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777777664 224455666677777777777777766655542222 2334444555566666666666666
Q ss_pred hHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 010575 202 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITW 279 (507)
Q Consensus 202 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 279 (507)
.+.+. .....-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+ ++...-
T Consensus 207 lqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 65432 122222234455566666666666666666665544455556666666666666666666665554 233333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH---VGLVELGRRYFNIMK 338 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 338 (507)
..+...-....-.+.|...+.+-... +|+...+..++..... .|...+....++.|.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33433333334444555544444433 5666666666654432 223344444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-10 Score=102.09 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=217.3
Q ss_pred cCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010575 157 VGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH 233 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (507)
.|++..|+++..+-.+. ....|..-+.+.-+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 79999999999886652 334555566777889999999999999987533556666777778889999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 234 NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
..+.+.+ +.++.+......+|.+.|++.....++..+.+.+. .+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998887 56677888899999999999999999999987432 36777777666666666666677776
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHH
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAA 380 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~ 380 (507)
... .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+.. ..-.+.+-++...-.+..++. . ...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4556667778888899999999999999999887 6666622 122344556665555555444 1 122447
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+.+|...|.+.+.+.+|...|+.+++..|+ ...|..+++++.+.|+..+|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7889999999999999999999999999998 7789999999999999999999998875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=108.13 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...|...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45556677777788888888888776654 245677778888888899999999998888763 33556777788888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|++++|...++.+......+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998864222334556777888899999999999999887 3334 4667888888999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888888888888999999999999999999888753
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-10 Score=102.55 Aligned_cols=416 Identities=11% Similarity=0.028 Sum_probs=288.8
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhcc--CCCCCcccHHHHHHHHHcCCCchHHHHHHHHH----HHc--------
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTH--KSKPDVYLYNTTIKALCQTDNPLNAVILYNKI----QAS-------- 70 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~-------- 70 (507)
|+..||.-.--++++|.-.|..+.|..+... +.+.|..+.......+.+..++++|..++..- ..-
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~ 123 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA 123 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence 3445555555678888888888888777654 55678888888888889999999999988822 110
Q ss_pred -CCCCCccc----HHHHH-------HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------------
Q 010575 71 -ALRPDNYS----FPFVL-------KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC-------------- 124 (507)
Q Consensus 71 -~~~p~~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 124 (507)
-+.+|..- -+.-. ..|....++++|...|.+.+...+. +...+..++....-.
T Consensus 124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 124 NTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred ceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 01111111 01111 2233455677777777777655432 222222222221111
Q ss_pred ----CChHHHHHHHHhc----ccC-----CC---------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHH
Q 010575 125 ----KCIYDARKVFDEL----SLR-----VW---------NVAVWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWT 179 (507)
Q Consensus 125 ----g~~~~A~~~~~~~----~~~-----~p---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~ 179 (507)
.+.+.-...|+-. ... .| +......-..-+...+++.+..++++...+.|+ ..+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 1111222223211 000 11 233344445666778999999999999887544 5566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
.-|.++...|+..+-..+=.++++. .+....+|-++.--|...|+.++|..+|.+....+ +.-...|-.+...|...|
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcc
Confidence 6677889999999888888888876 34567788888888888899999999999888665 333567888999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..+.|+..|....+ .....+--+..-|.+.++..-|...|.+.... .+-|+..++-+.-.....+.+.+|..+|+.
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 99999998877654 22233444666788899999999999998765 234667777777667778999999999998
Q ss_pred hHHhh-CCC----CChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 337 MKSRY-GIE----PKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 337 ~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..... .+. .-..+++.|..+|.+.+.+++|+..+++. -.+.+..++.++.-.|...|+++.|+..|.+++.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 87321 111 13456889999999999999999999988 334588899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYA 424 (507)
Q Consensus 410 p~~~~~~~~l~~~~~ 424 (507)
|++..+-..|..+..
T Consensus 520 p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 520 PDNIFISELLKLAIE 534 (611)
T ss_pred CccHHHHHHHHHHHH
Confidence 998776666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-09 Score=101.56 Aligned_cols=422 Identities=14% Similarity=0.172 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC-----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK-----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKA 85 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 85 (507)
..|...+..+.++|++..-+.+|+.... .....|...+.-....+-++.++.+|++.++ +.|. .-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHH
Confidence 4555566666666666666666655321 2234466666655566666666666666555 2232 23444455
Q ss_pred HHccCCcHHHHHHHHHHH----------------------------------------HcCC--CCc--HHHHHHHHHHH
Q 010575 86 VVKLSTIELGREIHCQTV----------------------------------------GTGL--DSD--VHVVAALIQMY 121 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~----------------------------------------~~~~--~~~--~~~~~~l~~~~ 121 (507)
++..+++++|.+.+...+ +.|+ -+| ...|.+|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555555555544444332 1111 112 24567777777
Q ss_pred HhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHhcCCC------
Q 010575 122 ASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVG----------------------DLNNARALFELMTEK------ 173 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~~~~~------ 173 (507)
.+.|.+++|..+|++.......+.-++.+.+.|++.. +++-....|+.+...
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 7777777777777776554333333444444443310 111222222222211
Q ss_pred ---------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 174 ---------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP------DEIAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 174 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
++..|..- .-+..|+..+-...|.+..+. +.| -...+..+.+.|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11112111 112344555566666665543 122 123455666666677777777777776666
Q ss_pred cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------------------ChhHHHHHHHHHHHcCChHH
Q 010575 239 YGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN---K------------------SVITWTTMIAGLALHGLGRE 294 (507)
Q Consensus 239 ~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~------------------~~~~~~~l~~~~~~~~~~~~ 294 (507)
...+.- ..+|..-...=.+..+++.|+++.+.... + +...|...+...-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 543322 34555555555666666666666655431 0 12234444433333444444
Q ss_pred HHHHHHHHHH----------------------------------CCCCCCH-HHHHHHHHHHh---ccCcHHHHHHHHHH
Q 010575 295 ALDMFSRMER----------------------------------ARVKPNE-ITFIAILSACC---HVGLVELGRRYFNI 336 (507)
Q Consensus 295 A~~~~~~m~~----------------------------------~g~~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~ 336 (507)
...+++++.+ .-..|+. ..|+..+.-+. ....++.|..+|++
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444444333 2222333 23443333322 22467788888888
Q ss_pred hHHhhCCCCChhH--HHHHHHHHhhcCCHHHHHHHHhhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 337 MKSRYGIEPKIEQ--YGCMIDLLGRAGYLQEAEKLLRRM--PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 337 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
+.+ +.+|...- |......=.+.|-...|+++++++ ++++. ...|+..|.--...=-+..-..+|+++++.-|
T Consensus 576 aL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 576 ALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 876 66654322 222222223457777888888877 23332 23566665533332233444567777777766
Q ss_pred CCC--chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 411 HNS--GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 411 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++- ......++.-.+.|..+.|..++....+
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 632 2334556666777888888888866643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-09 Score=93.38 Aligned_cols=398 Identities=11% Similarity=0.017 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHH-HHcCC-CchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKA-LCQTD-NPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
...--..+..|...++-..|..++...++.-...-+.|+-+ +.+.| +-.++.--+......- | ... ..|.+..
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p--~aL-~~i~~ll 171 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P--MAL-QVIEALL 171 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c--hHH-HHHHHHH
Confidence 33444566677777888888888877776433333333333 33222 2222222222222210 0 001 1111111
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--cCChHHHHH--HHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS--CKCIYDARK--VFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~--~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
+.+ +..+...=..|-.....|+..+....+.+++. .++...|.. ++-+.....| |+.....+..++...|+.++
T Consensus 172 ~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 172 ELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred HHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 110 01111111122222233444444444444433 344334433 3334444444 67778888888888999999
Q ss_pred HHHHHHhcCCCChhHHH---HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 163 ARALFELMTEKNVISWT---TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
|+..|++..--|+.+.. ...-.+.+.|++++...+...+.... .-+...|-.-+......++++.|..+-++.++.
T Consensus 251 a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 251 AEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 99988887754443322 23344567788888877777765432 122223333334445667888888888887776
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 316 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 316 (507)
+ +.++..+-.-..++...++.++|.-.|+.... -+...|.-|+.+|...|++.+|...-+...+. +..+..+...
T Consensus 330 ~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 330 E-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred C-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 5 44555555556778888999999888887543 36789999999999999999998887776654 3445666665
Q ss_pred HH-HHHh-ccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHc
Q 010575 317 IL-SACC-HVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 317 l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~ 392 (507)
+. ..|. ....-++|..++++.. .+.|+ ....+.+...+...|+.+.++.++++. ...||....+.|...+...
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 53 3333 3344678888888877 44565 455667778888999999999999987 6788999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
+.+++|+..|..+++++|++..+...|
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999976544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-10 Score=107.03 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQY-----GL-NTI-VPLNNALIDMYAKSGKIGKALQVFENMKN--------K 274 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~ 274 (507)
..+...+...|...|+++.|..+++..++. |. .|. ....+.+...|...+++.+|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777778888877777766654 21 122 22334466778888888888888887653 1
Q ss_pred C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--
Q 010575 275 S---VITWTTMIAGLALHGLGREALDMFSRMERA-----RV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYG-- 342 (507)
Q Consensus 275 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 342 (507)
+ ..+++.|...|.+.|++++|...+++..+- |. .|.. ..++.+...|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 247777888888999988888888776531 22 2222 2456677788899999999999988776433
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-
Q 010575 343 IEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK- 407 (507)
Q Consensus 343 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 407 (507)
..++ ..+++.|...|...|++++|.++++++ +..+ ....++.+..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357889999999999999999999887 1122 244678888899999999999999998854
Q ss_pred ---cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 408 ---LEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 408 ---~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+|+++ ..|..|+.+|.+.|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456654 468899999999999999999998886
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-09 Score=103.68 Aligned_cols=417 Identities=13% Similarity=0.052 Sum_probs=240.3
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPF 81 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ 81 (507)
++-|+.+|..|.-++...|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-....-.| |+..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345777777777777888888888888877543 345567777777777788777887777654422123 3333333
Q ss_pred HHHHHH-ccCCcHHHHHHHHHHHHcC--C--CCcHHHHHHHHHHHHhc-----------CChHHHHHHHHhcccCCC-Ch
Q 010575 82 VLKAVV-KLSTIELGREIHCQTVGTG--L--DSDVHVVAALIQMYASC-----------KCIYDARKVFDELSLRVW-NV 144 (507)
Q Consensus 82 l~~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p-~~ 144 (507)
.-..|. +.+..++++.+-.+.+... . ......|..+.-+|... ....++++.+++..+..| |.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334443 4566666666666655521 1 11223333333333321 113356666666655544 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 145 AVWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 145 ~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
...-.+.--|+..++++.|.+..++..+ .+...|..|.-.+...+++.+|+.+.+.....- .-|..-...-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 3333333344555666666666555443 345666666666666666666666666554421 11111111111122
Q ss_pred hccCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcC---
Q 010575 221 AQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN------KSVITWTTMIAGLALHG--- 290 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~--- 290 (507)
...++.+++......+...- -.+. ....++-....+....+.- ..+.++..+..-....+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22344444444433333210 0000 0011112222223222211 11122322222211111
Q ss_pred ChHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 291 LGREALDMFSRMERARVK--PN------EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~--p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
.++.. +...-.. |+ ...|......+.+.+..++|...+.++.+ -.+.....|......+...|+
T Consensus 628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHh
Confidence 11111 2211122 22 12344555677888999999988888875 334566778778888999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGEC--ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
.++|.+.|... .+.| ++.+..++...+...|+..-|.. ++..+++++|.++.+|..++.++.+.|+.++|.+.|..
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999999887 5666 45688999999999998888888 99999999999999999999999999999999999988
Q ss_pred HHh
Q 010575 439 MRD 441 (507)
Q Consensus 439 ~~~ 441 (507)
..+
T Consensus 780 a~q 782 (799)
T KOG4162|consen 780 ALQ 782 (799)
T ss_pred HHh
Confidence 753
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-11 Score=112.92 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 010575 62 ILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRV 141 (507)
Q Consensus 62 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 141 (507)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-.....+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 34556666777777777777777777777777777 7777766666666677777777777777665554 4
Q ss_pred CChhhHHHHHHHHHhcCCHHH
Q 010575 142 WNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 142 p~~~~~~~li~~~~~~~~~~~ 162 (507)
|...+|..|..+|...||+..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH
Confidence 566777777777777777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=105.42 Aligned_cols=229 Identities=14% Similarity=0.111 Sum_probs=140.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
+.+..+|.+.|.+.+|.+.|+.-++. .|-..||..+-++|.+..++..|..++.+-++.- +.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45667777777777777777776664 3555667677777777777777777776665542 44444444445555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
++.++|.++|+...+ .++.+..++..+|.-.++++-|+..++++...|+. ++..|+.+.-+|.-.+.++.++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555443 23333444444455555555555555555555443 44445555545555555555554444
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
+.... --.|+ .-...|..+.......||+..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44432 11111 123456666666667788888888888888888888888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+++|+-.-.+.|+.++|..++....+.
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888777543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.9e-09 Score=99.85 Aligned_cols=409 Identities=13% Similarity=0.073 Sum_probs=222.7
Q ss_pred HHHHHHccCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH-c---
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSK--PD-VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV-K--- 88 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~--- 88 (507)
....+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44556777888888888876544 33 3445556667777888888888888888755 66655555444443 1
Q ss_pred --cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH-HHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010575 89 --LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY-DARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 89 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
..+.+...++++++...-+..+. ...+.-.+.....+. .+...+.....++ -+.+++.+-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~--~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDA--PRRLPLDFLEGDEFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccc--hhHhhcccCCHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHHHH
Confidence 12456666777777665432222 212211122212222 2333333333331 22345555555554444444444
Q ss_pred HHHhcCC------------------CCh--hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccC
Q 010575 166 LFELMTE------------------KNV--ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLG 224 (507)
Q Consensus 166 ~~~~~~~------------------~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~ 224 (507)
++..... |.. .++..+...|-..|++++|++++++..+. .|+ ...|..-.+.+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 4444321 111 23455666777777777777777777765 333 456666677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HH--HHHHHHHHHcCCh
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI----------TW--TTMIAGLALHGLG 292 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~ 292 (507)
++.+|...++.....+ .-|..+-+..+..+.++|+.++|.+++....+++.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777777777665 455566666667777777777777777766654311 22 2345667777777
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC--------
Q 010575 293 REALDMFSRMERA--RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY-------- 362 (507)
Q Consensus 293 ~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 362 (507)
..|+..|....+. .+.-|..-|.. -|.+.+-+..=.++++---.-++-+.-......++..|.+.-+
T Consensus 322 ~~ALk~~~~v~k~f~~~~~DQfDFH~---Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~ 398 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDFEEDQFDFHS---YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGE 398 (517)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHH---HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 7777777766542 12223222221 2344443332222222111110111112223344444432100
Q ss_pred --------H--HHHHHHHhhC----------------------------------CCCCCHHHHHHHHHHHHHc-CCHHH
Q 010575 363 --------L--QEAEKLLRRM----------------------------------PFEANAAIWGSLLAASNIY-GDVEL 397 (507)
Q Consensus 363 --------~--~~A~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~-g~~~~ 397 (507)
. .+..+.-.+. +...|.. .+..-+... .-.++
T Consensus 399 ~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~ 475 (517)
T PF12569_consen 399 EQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEE 475 (517)
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHH
Confidence 0 0000110000 0000110 111112222 24688
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|.++++.+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 476 A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 476 AMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999988887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-08 Score=91.53 Aligned_cols=418 Identities=11% Similarity=0.063 Sum_probs=257.3
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCcccHHHHH
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-ALRPDNYSFPFVL 83 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~ 83 (507)
++.|+...|..+-++ ++.++-++.+|+ ..|-..+..+..+|++......|+..+.. .+......|...+
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 344554455444333 344555555554 45888888889999999999999998763 2333456788888
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-------CC-ChhhHHHHHHHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-------VW-NVAVWNTMVAGYA 155 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~li~~~~ 155 (507)
.-....+-++.+.++++..++..+ ..-+..+..+++.+++++|.+.+..+... ++ +...|..+.+...
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVAP----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 888889999999999999987643 33567788899999999999999887554 22 3334444444333
Q ss_pred hcCCHH---HHHHHHHhcCC--CC--hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH--------
Q 010575 156 KVGDLN---NARALFELMTE--KN--VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC-------- 220 (507)
Q Consensus 156 ~~~~~~---~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-------- 220 (507)
+..+.- ....+++.+.. +| ...|++|..-|.+.|.+++|..+|++....- .+..-|+.+.++|
T Consensus 222 ~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHH
Confidence 322211 22233333332 11 2344455555555555555554444433221 1111111111111
Q ss_pred ----------------------------------------------------------hccCCHHHHHHHHHHHHHcCC-
Q 010575 221 ----------------------------------------------------------AQLGAVELGEWIHNYIEQYGL- 241 (507)
Q Consensus 221 ----------------------------------------------------------~~~~~~~~a~~~~~~~~~~~~- 241 (507)
...|+..+-...+.++++.--
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP 379 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDP 379 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCc
Confidence 122344445555555554311
Q ss_pred ----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-
Q 010575 242 ----NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-------ITWTTMIAGLALHGLGREALDMFSRMERARVKP- 309 (507)
Q Consensus 242 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p- 309 (507)
-.-...|..+...|-..|+++.|+.+|++..+-+- .+|..-...-.++.+++.|+.+++......-.|
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 11234667788889999999999999998877322 356666666677888999999888775431111
Q ss_pred ----------------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 310 ----------------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 310 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
+...|...+......|-++....+++++.+-.- .++...-.....+..+.-++++.++|++-
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 122344555555566788888888888886422 23333333444455677789999999886
Q ss_pred -C--CCCCH-HHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 374 -P--FEANA-AIWGSLLAASN---IYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 374 -~--~~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+ .-|+. ..|+..+.-+. .....+.|..+|+++++..|.. .++|...+..-.+-|.-..|+.++++.-
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 23444 36777766543 2347899999999999988752 2345555666667788888888888763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-10 Score=112.08 Aligned_cols=258 Identities=13% Similarity=0.011 Sum_probs=184.6
Q ss_pred ChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 010575 174 NVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPD-EIAMLAALSACA---------QLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 174 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 238 (507)
+...|...+.+-.. .+.+++|...|++..+.. |+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554321 234678999999998753 44 444555544433 23458899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITF 314 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 314 (507)
.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55677888888889999999999999998775 3 4567888899999999999999999999886 3432 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNI 391 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~ 391 (507)
..++..+...|++++|...++++... .+| ++..+..+..++...|++++|...++++ +..|+.. .++.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566689999999999998763 234 4556777888899999999999999988 4455544 34555556666
Q ss_pred cCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 392 YGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.| ++|...++++++ ..|.++. .+..+|.-.|+-+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66 477777777755 3444433 366677788888888777 77765543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-08 Score=90.99 Aligned_cols=409 Identities=15% Similarity=0.127 Sum_probs=220.9
Q ss_pred HHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--Hcc
Q 010575 15 RFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKL 89 (507)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~ 89 (507)
+=++.+...|++++|.+...++.. .+...+..=+-++.+.+++++|+.+.+.-.. ...+..-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 345666788889999988877654 3556677777788888999999866554221 01111111 23344 478
Q ss_pred CCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhcccCC-CC------------------------
Q 010575 90 STIELGREIHCQTVGTGLDSD-VHVVAALIQMYASCKCIYDARKVFDELSLRV-WN------------------------ 143 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~------------------------ 143 (507)
+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.... ++
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 88888888877 33333 3355556677888899999999988885441 11
Q ss_pred ----hhhHHHHH---HHHHhcCCHHHHHHHHHhcC--------CCCh----------hHHHHHHHHHHhCCChhHHHHHH
Q 010575 144 ----VAVWNTMV---AGYAKVGDLNNARALFELMT--------EKNV----------ISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 144 ----~~~~~~li---~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
..+|..+. ..+...|++.+|+++++... +.|. ..--.|..++...|+.++|.++|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11222221 22233455555555554441 0000 01112333344455555555555
Q ss_pred HHHhHCCCCCCHHHHHHHHHH---HhccCC-HH-HHHHHH------------HHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 199 RRMQVENVKPDEIAMLAALSA---CAQLGA-VE-LGEWIH------------NYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~---~~~~~~-~~-~a~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...+..+ .+|........+- ...-.+ ++ .+...+ ..+... -......-+.++..| .+.-
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhH
Confidence 5554443 2232211111111 100000 00 000000 000000 000000111122222 2333
Q ss_pred HHHHHHHHhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH---
Q 010575 262 GKALQVFENMKNKS-VITWTTMIAGLA--LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN--- 335 (507)
Q Consensus 262 ~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--- 335 (507)
+.+.++-....... ...+..++.... +...+.++.+++....+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444444444322 233444443332 223577888888877665222223444556667788999999999998
Q ss_pred -----HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010575 336 -----IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEAN-AAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 336 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.+.+. +..| .+...+...+.+.++.+.|..++..+ ...+. ..++..+...-.+.|+.++|..+
T Consensus 404 ~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44432 3333 44455777777777766666665544 22221 22333344444678999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++++++.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999999999999999999999887 5677887776664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-10 Score=97.92 Aligned_cols=198 Identities=17% Similarity=0.089 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 255 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (507)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN------------ 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------------
Confidence 345555555566666666666665555432 2223344444444555555555555555444432 12
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|...+
T Consensus 98 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 98 -------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344444555555555555555555555432111 2234444555566666666666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
++.... .+.+...+..+...+...|++++|...+++. .. ..+...+..++..+...|+.+.|..+.+.+.+.
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666542 2223445556666666666666666666655 11 224445555555666667777776666665444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-08 Score=85.87 Aligned_cols=297 Identities=11% Similarity=-0.000 Sum_probs=214.5
Q ss_pred cCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 010575 157 VGDLNNARALFELMT-----EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGE 230 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~ 230 (507)
.++-..|..++-.+. ..|+.....+...+...|+.++|+..|++.+.. .|+.. .+....-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 444444444443332 246777888999999999999999999998764 34332 2222233456778888877
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 231 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
.+...+.... ..+...|-.-.......++++.|..+-++..+ +++..+-.-...+...|+.++|.-.|+..+..
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 7777666443 12222232333445566788889888887665 45556666667888999999999999998875
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHhhC-CCCCC-HHHH
Q 010575 308 KP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLLG-RAGYLQEAEKLLRRM-PFEAN-AAIW 382 (507)
Q Consensus 308 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~-~~~~ 382 (507)
.| +...|..|+.+|...|.+.+|...-..... -++.+..+.+.+. ..+. .-.--++|.+++++. ..+|+ ....
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 44 668999999999999999999888777765 3344555555442 2222 223458899999887 66775 4466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEF 462 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (507)
+.+...|...|..+.++.++++.+...|+ ......|++.+...+.+.+|.+.|.....
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------- 499 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------- 499 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh---------------------
Confidence 77788899999999999999999999998 67899999999999999999999988863
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 463 VAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
.+|+++....-+..+.++++
T Consensus 500 -----~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -----QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -----cCccchHHHHHHHHHHhccC
Confidence 35666777777776666665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-10 Score=104.84 Aligned_cols=231 Identities=15% Similarity=0.103 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHC-----C-CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc-----C--C
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVE-----N-VKPDEIAM-LAALSACAQLGAVELGEWIHNYIEQY-----G--L 241 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~ 241 (507)
.+...+...|...|+++.|..+++..++. | ..|...+. ..+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35556889999999999999999987764 2 23444443 34677889999999999999988763 2 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN----------KSV-ITWTTMIAGLALHGLGREALDMFSRMERA---RV 307 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~ 307 (507)
+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22345677788899999999998888776543 122 35667788899999999999999886542 12
Q ss_pred CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC----
Q 010575 308 KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRY----G-IEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM---- 373 (507)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 373 (507)
.++ ..+++.|...|...|++++|.++|+++.... + ..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 2578999999999999999999999988643 1 1222 456788889999999999999998876
Q ss_pred ----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 374 ----PFEANA-AIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 374 ----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+..|+. .+|..|...|...|+++.|+++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344544 579999999999999999999999985
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=99.39 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccC
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF-IAILSACCHVG 325 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g 325 (507)
+.+..+|.+.|.+.+|.+.|+.-.+ +-+.||..|-..|.+..++..|+.++.+-.+. .|-.+|| ....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5688899999999999999988765 67789999999999999999999999998875 5555554 46777888899
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 326 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
+.+.|.++++...+. -+.++....++...|.-.++++-|+.+|+++ + ..++..|..+.-+|.-.++++-+...|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999873 3456677777888888999999999999987 4 357888999999999999999999999
Q ss_pred HHHhcc--CCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 403 QHLIKL--EPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 403 ~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++++.. +|+ -..+|.+++.+....|++.-|.+-|+-....+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999764 344 466899999999999999999999988764443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-10 Score=110.41 Aligned_cols=226 Identities=9% Similarity=-0.064 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 010575 209 DEIAMLAALSACA-----QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK---------SGKIGKALQVFENMKN- 273 (507)
Q Consensus 209 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~- 273 (507)
+...|...+.+.. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3444545555431 2245678999999998775 3345566666655542 2458899999998876
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHH
Q 010575 274 --KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQY 350 (507)
Q Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 350 (507)
.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..++++.+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 356788888889999999999999999999863 234567888888999999999999999999854 4543 233
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM--PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
..++..+...|++++|...++++ ...| ++..+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455567789999999999887 2235 44557778888899999999999999998888888888888888888888
Q ss_pred CchHHHHHHHHHHh
Q 010575 428 RWNESGKIRKVMRD 441 (507)
Q Consensus 428 ~~~~A~~~~~~~~~ 441 (507)
++|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 588888888754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-12 Score=80.39 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=39.2
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK 88 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 88 (507)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888887888888888888777753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-10 Score=100.93 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 323 (507)
|..+...|...|+.++|...|+...+ .+...|+.+...+...|++++|...|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554433 23345555555555555555555555555543 22 23444445555555
Q ss_pred cCcHHHHHHHHHHhHH
Q 010575 324 VGLVELGRRYFNIMKS 339 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~ 339 (507)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-09 Score=95.03 Aligned_cols=228 Identities=10% Similarity=-0.003 Sum_probs=152.2
Q ss_pred CChhHHHHHHHHHhHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010575 189 DQPNEAITLFRRMQVEN-VKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 265 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 265 (507)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566667776666532 2222 2446666667788888888888888888765 456778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 266 QVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 266 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...+++++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99888765 3 4567888888889999999999999998875 44432222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHhhcCCHH--HHHHHHhhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CC
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQ--EAEKLLRRM-PF----EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH-NS 413 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 413 (507)
.+|+...+ .+... ..|+.. ++.+.+... .. .| ....|..+...+...|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33333222 23333 344443 333333322 11 11 3457889999999999999999999999999974 44
Q ss_pred chHHHHHHHHH
Q 010575 414 GNYAILSNIYA 424 (507)
Q Consensus 414 ~~~~~l~~~~~ 424 (507)
.....++....
T Consensus 272 e~~~~~~e~~~ 282 (296)
T PRK11189 272 EHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-10 Score=90.21 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
+...|..+|...|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+-|++..+. -+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3455677888888888888888888876 34 4467778888888888888888888888752 23356777888888
Q ss_pred HhhcCCHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 357 LGRAGYLQEAEKLLRRM---PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
+|..|++++|...|+++ |.-| -..+|..+..+..+.|+.+.|...|++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888887 2222 3457888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 010575 433 GKIRKVMRDMGV 444 (507)
Q Consensus 433 ~~~~~~~~~~~~ 444 (507)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888865544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-07 Score=88.08 Aligned_cols=397 Identities=9% Similarity=0.002 Sum_probs=216.6
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH
Q 010575 51 LCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDA 130 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 130 (507)
+...|+-++|......-.+.. .-+.+.|..+.-.+....++++|.+.|...++.+.. |..++.-|.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344566666666665555422 234455666655555666677777777766665533 555555555555556666666
Q ss_pred HHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH------HHHHHhCCChhHHHHHH
Q 010575 131 RKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-----KNVISWTTL------IAGYAQMDQPNEAITLF 198 (507)
Q Consensus 131 ~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~a~~~~ 198 (507)
...-.++.+..| ....|..+..++...|+...|..+++...+ ++...+... .......|..++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555555555544 344566666666666666666666655542 333332221 23344556666666655
Q ss_pred HHHhHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHH-HHHHhcCCC-
Q 010575 199 RRMQVENVKPDEIAM-LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN-ALIDMYAKSGKIGKAL-QVFENMKNK- 274 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~- 274 (507)
..-... ..|...+ ..-...+.+.+++++|..++..+.... ||..-|. .+..++.+-.+.-++. .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 443322 1122222 233445566677777777777666653 3333333 3333333222222222 444444331
Q ss_pred -ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-C---------
Q 010575 275 -SVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-G--------- 342 (507)
Q Consensus 275 -~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~--------- 342 (507)
-...-..+-.......+ .+..-.++..+.+.|+++-...+.++ |-.....+-..++.-.+.... |
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 00000011111111122 23334455666667766433333322 222111111111111111100 1
Q ss_pred ---CCCChhHHH--HHHHHHhhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 343 ---IEPKIEQYG--CMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 343 ---~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
-+|....|. .++..+-+.|+++.|..+++.+ ...|+.. .|..-.+.+.+.|++++|...++++.+++-.|..+
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 155655554 4677788999999999999988 5556544 45555677889999999999999999998776666
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCc-----cCCceeEEEEC
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDMGVK-----KMPGCSYIEVS 456 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~ 456 (507)
-..-+.-..++++.++|.++....-..|.. ....|.|..+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 667788888999999999999888766642 12346665444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-08 Score=84.74 Aligned_cols=297 Identities=9% Similarity=0.006 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHH---HHHHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHH
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTM---VAGYAKVGDLNNARALFELMTEKNVISWTT---LIAGYA 186 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~ 186 (507)
-...+...+...|++.+|+..|....+..| ..|.++ ...|...|+...|+.-|.+..+.-+..+.. -...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334455556666666677766666666633 333333 345555666666666555555422222222 223566
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCH--------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDE--------------IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
+.|.+++|..-|+..++.....+. ......+..+...|+...|+.....+++.. +.|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 677777777777776664321110 011223334555677777777777776654 55666666677
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HH----
Q 010575 253 DMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA-------IL---- 318 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-------l~---- 318 (507)
.+|...|++..|+.-++... ..+...+-.+-..+...|+.+.++...++-.+. .||...+.. +.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 77777777777766555433 345556666666677777777777777766653 555432111 11
Q ss_pred --HHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH
Q 010575 319 --SACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAAS 389 (507)
Q Consensus 319 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~ 389 (507)
......++|.++++..+...+. .|. ...+..+..++...|++-+|++...+. ...|+ ..++.-=..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1123445666666666666543 333 223344556666677777777776665 44554 55666666677
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.....++.|+.-|+.+.+.+|++..+-.
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7777777777777777777777654433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=77.66 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888899999999888888888888888888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-08 Score=96.93 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----
Q 010575 50 ALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC---- 124 (507)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 124 (507)
.+...|++++|++.++.-.. .-+|..+ .......+.+.|+.++|..++..+++.+++ |..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 34566777777777765433 2244333 344455566777777777777777776543 444444444444221
Q ss_pred -CChHHHHHHHHhcccCCCC
Q 010575 125 -KCIYDARKVFDELSLRVWN 143 (507)
Q Consensus 125 -g~~~~A~~~~~~~~~~~p~ 143 (507)
.+.+....+|+++....|.
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~ 109 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR 109 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 2455556666666655553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-08 Score=85.07 Aligned_cols=387 Identities=14% Similarity=0.013 Sum_probs=212.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVA-ALIQMY 121 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 121 (507)
+++++..+.+..++++|++++..-.++. | +....+.|..+|....++..|-..++++-...++ ..-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 4555555666666666666666655532 3 4444555556666666666666666666554322 22221 123445
Q ss_pred HhcCChHHHHHHHHhcccCCCChhhHHHHH--HHHHhcCCHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChhHHHHHH
Q 010575 122 ASCKCIYDARKVFDELSLRVWNVAVWNTMV--AGYAKVGDLNNARALFELMT-EKNVISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~li--~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
.+.+.+.+|+.+...|... |+...-..-+ ......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|
T Consensus 89 Y~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 5566666777776666553 1111111111 12223566666667776666 355555556666666777777777777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------c---------------hhHHHH
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT-------------I---------------VPLNNA 250 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~ 250 (507)
+...+-+---....|+..+ +..+.++.+.|.++..+++++|++. | +..+|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 7766543222334554443 4445667777777777776655421 1 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+..... --..||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 333456789999999999988753 566665543222 23445555555565655533 23478888999999988
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh-hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC----HHHHH
Q 010575 326 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG-RAGYLQEAEKLLRRMPFEANAAIWGSLLAAS-NIYGD----VELGE 399 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~----~~~A~ 399 (507)
-++.|-.++-+-....-.-.+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+ ...|+
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888887754332100011333443 333333 3456777777666551000000111111111 11111 22333
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+-+++.++.- ..+....++.|++..++.-+.++|+.-.+.
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4444444432 124667788999999999999999876543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-08 Score=90.15 Aligned_cols=390 Identities=13% Similarity=0.128 Sum_probs=256.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
|..++.. ...+++...++..+.+.. +.+--..|.....-.+...|+.++|....+.-++.++. +...|..+.-.+..
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3344443 345778888888888777 33334455555555567889999999988888776544 67788888888888
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
..++++|++.|.......| |...|..+--.-.+.++++.....-....+- .-..|..++.++.-.|++..|..+++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877 6777888877778888888877777666642 34678888899999999999999999
Q ss_pred HHhHCC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 200 RMQVEN-VKPDEIAMLAALS------ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 272 (507)
Q Consensus 200 ~m~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 272 (507)
+..+.. ..|+...|..... .....|.++.|.+.+..-...- ......-..-...+.+.+++++|..+|..+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 988764 3466655543322 3456677788877766544331 1122233345667889999999999999988
Q ss_pred CCCh--hHH-HHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 273 NKSV--ITW-TTMIAGLALHGLGREAL-DMFSRMERARVKPNEITFIAI-LSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 273 ~~~~--~~~-~~l~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
.+++ ..| -.+..++.+-.+.-++. .+|....+. .|....-..+ +.......-.+..-.++....++ |+++-.
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf 323 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVF 323 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchh
Confidence 7433 344 34445554333444444 666666553 2222111111 11111122233334444555554 666533
Q ss_pred hHHHHHHHHHhhcCCHH---H-HHHHHhhC-C------------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 348 EQYGCMIDLLGRAGYLQ---E-AEKLLRRM-P------------FEANAAIWG--SLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~---~-A~~~~~~~-~------------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
.. +...|-.-...+ + +..+...+ + ..|....|. .++..+-+.|+++.|...++.++..
T Consensus 324 ~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 324 KD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred hh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 32 333332211111 1 11222222 1 245555554 4666788999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.|.-+..|..-++++...|..++|..++++.++-+
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-08 Score=84.12 Aligned_cols=410 Identities=12% Similarity=0.019 Sum_probs=218.5
Q ss_pred HHHHHccCChhHHHHHhccCCCCC---c-ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPD---V-YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
+.-+....++..|+.+++.-...+ . .+=-.+...+.+-|++++|..+|.-+.... .|+...+..|.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 555667788999999887644311 1 122234456678899999999998887744 45666666666666778888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.+|..+-... ..++-.-..|+..-.+.|+-++-..+-+.+... ..--.++.+.....-.+++|++++.+...
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765433 112223333445555566666655555555432 22333444444445567777777777665
Q ss_pred CC--hhHHHH-HHHHHHhCCChhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhcc--CC---------------------
Q 010575 173 KN--VISWTT-LIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQL--GA--------------------- 225 (507)
Q Consensus 173 ~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~--~~--------------------- 225 (507)
.+ -...|. +.-+|.+..-++-+.++++--++. -||+ ...+..+....+. |+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 33 233332 334556666666666666655543 2222 2222221111111 11
Q ss_pred ------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---
Q 010575 226 ------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG--- 290 (507)
Q Consensus 226 ------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--- 290 (507)
-+.|.+++--+.+. -|. .--.|+-.|.+.++.++|..+.+.+....+.-|-.-.-.++..|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 11222222111111 111 11234455778888888888887776554443333222233333
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 291 ----LGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 291 ----~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
...-|...|+-.-+++..-|.. ---++..++.-..+++..+..+..+..- -...|...+ .+.++++..|++.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHH
Confidence 3334444444433333332221 1123334444445667777777666542 222333333 46777777788888
Q ss_pred HHHHHhhCC--CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 366 AEKLLRRMP--FEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 366 A~~~~~~~~--~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
|+++|-++. .-.|..+|.+++ ++|.+.+.++.|..++-++ ..|. ....+..++..|.+++.+=-|.+.|.++..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 888777762 113555555544 4556777777765554332 1222 223444556677777777777777777764
Q ss_pred CCCc
Q 010575 442 MGVK 445 (507)
Q Consensus 442 ~~~~ 445 (507)
.++.
T Consensus 490 lDP~ 493 (557)
T KOG3785|consen 490 LDPT 493 (557)
T ss_pred cCCC
Confidence 4443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=100.01 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=189.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 010575 220 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|..+.-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999888876 66788898898889999999999999988776 35677888888899999999999
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 010575 297 DMFSRMERARVKP--------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 297 ~~~~~m~~~g~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (507)
..|+.-+....+- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9998876542110 0000000 12223334555666666666555666888899999999999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010575 369 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 369 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
.|+.+ ..+| |..+||.|...+....+.++|+..|.+++++.|...++...|+..|...|.++||.+.|-.........
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99988 6677 556899999999999999999999999999999999999999999999999999999987765332211
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 447 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
..+ .+..++ ++.++..|......|.
T Consensus 532 ~~~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 RNH---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ccc---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 000 001222 5678888876665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-08 Score=82.88 Aligned_cols=194 Identities=15% Similarity=0.016 Sum_probs=94.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 292 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 292 (507)
+.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+ .+..+.|.....+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3334444444444444444444443 33344444444555555555555555554432 2334445555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 293 REALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+. .+-.+.....+.......|++..|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554322121 234555555555555555555555555532 12223344445555555555555555555
Q ss_pred hC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 372 RM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 372 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+. ...++..+....|..-...||.+.+.+.=.++.+..|.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 54 222444444445555555555555555555555555553
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=82.40 Aligned_cols=296 Identities=11% Similarity=0.089 Sum_probs=220.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCCChhHHHHHHHHHhHCCCCCCHHHH-HHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI---AGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LAALS 218 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~ 218 (507)
++.-..-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+...++ ++||...- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3344455677788899999999999999998888777664 578999999999999999887 56775432 12233
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCc--hh------------HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQYGLNTI--VP------------LNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTT 281 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 281 (507)
.+.+.|.++.|..-|+.+++...... .. .....+..+...|+...|+.....+.+ -|...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 56889999999999999988753211 11 112234456677899999999888876 36778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH----HHHH---H
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ----YGCM---I 354 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---~ 354 (507)
-..+|...|++..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.. .+.||... |..| .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHH
Confidence 8899999999999999888877653 3345566667777888899999988888887 55777532 2111 1
Q ss_pred ------HHHhhcCCHHHHHHHHhhC-CCCCCH--HHH---HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 355 ------DLLGRAGYLQEAEKLLRRM-PFEANA--AIW---GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 355 ------~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
......+++.++++-.+.. ...|.. ..+ ..+-.++...|++.+|++...++++++|++..++..-+.+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1234567777777777665 445542 223 3334455778999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCCC
Q 010575 423 YAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|.-...+++|+.=|++..+-+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999999999998865443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-07 Score=86.27 Aligned_cols=394 Identities=14% Similarity=0.034 Sum_probs=241.4
Q ss_pred HHHHHccCChhHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHccCCc
Q 010575 17 IDSCSSLGFSDYAYSIFTHKS---KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKLSTI 92 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 92 (507)
-++.++.|+++.|...|.+.. ++|...|..-..+|+..|++++|++=-.+-++ +.|+. ..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 345678899999999998743 46888899999999999999999887666666 56774 5699999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHhcccCCC------ChhhHHHHHHHHHh-------
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY---DARKVFDELSLRVW------NVAVWNTMVAGYAK------- 156 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p------~~~~~~~li~~~~~------- 156 (507)
++|...|.+-++..+. +...++-|.+++....... .--.++..+.. .| ....|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999998887533 6677777887772110000 00001111111 11 11122222222211
Q ss_pred ---cCCHHHHHHHHHhcC----------------CC------------C----------hhHHHHHHHHHHhCCChhHHH
Q 010575 157 ---VGDLNNARALFELMT----------------EK------------N----------VISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 157 ---~~~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~~~~~~a~ 195 (507)
...+..|...+.... .| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111122222221110 01 0 012445677777888888888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHhcCCHHHHHHHH
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN-------NALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~ 268 (507)
+.+....... -+..-++....++...|.+..+...-...++.|... ..-+ ..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888877754 344444556667788888777776666666555221 1111 22333556667777777777
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 269 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
.+...+... -....+....+++........-. .|.. .-...-...+.+.|++..|...|.+++++ .+-|.
T Consensus 322 ~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da 392 (539)
T KOG0548|consen 322 QKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDA 392 (539)
T ss_pred HHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchh
Confidence 764432110 11122223344444444443332 2322 11222355677788888888888888874 35567
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..|....-+|.+.|.+..|++-.+.. ...|+ ...|.-=..++....++++|.+.|+++++.+|++..+...+.++...
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888888888888888888776655 33443 34555556667777888888888888888888877777776666654
Q ss_pred c
Q 010575 426 L 426 (507)
Q Consensus 426 ~ 426 (507)
.
T Consensus 473 ~ 473 (539)
T KOG0548|consen 473 Q 473 (539)
T ss_pred h
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-08 Score=90.54 Aligned_cols=376 Identities=11% Similarity=0.044 Sum_probs=226.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY 128 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (507)
.+.+..|+++.|+..|-+.+.-. ++|..-|+.=..+++..|++++|++=-.+.++..+.. ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhcccHH
Confidence 45678899999999999988743 3466778888889999999999987766666654332 356888888899999999
Q ss_pred HHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH------hcCC-C------ChhHHHHHHHHHHhC------
Q 010575 129 DARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFE------LMTE-K------NVISWTTLIAGYAQM------ 188 (507)
Q Consensus 129 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~------~~~~-~------~~~~~~~li~~~~~~------ 188 (507)
+|+..|.+-.+..| +...++.+..++.. +.. +-+.|. .+.. | ...+|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999888877 56667777776611 100 111111 0000 0 011233333222111
Q ss_pred -CChhHHHHHHHHHh--------HCC-------CCCC----------------------HHHHHHHHHHHhccCCHHHHH
Q 010575 189 -DQPNEAITLFRRMQ--------VEN-------VKPD----------------------EIAMLAALSACAQLGAVELGE 230 (507)
Q Consensus 189 -~~~~~a~~~~~~m~--------~~~-------~~~~----------------------~~~~~~ll~~~~~~~~~~~a~ 230 (507)
.+.....+..-.+. ..+ ..|. ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111110 000 0110 012234444455555666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---h-------HHHHHHHHHHHcCChHHHHHHHH
Q 010575 231 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---I-------TWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
+-+....... .+..-++....+|...|.+..+...-....+.+- . .+..+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 6666655554 4444555556666666666555554444333211 1 12223334555566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-
Q 010575 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA- 377 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 377 (507)
+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++..|+..|.++ ...|
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 655433333221 12222333333332222 122322 11122256677899999999999988 4445
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
|...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++.-..+|++|.+.|.+.++.+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667888899999999999999999999999999999999999999999999999999998887543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-07 Score=87.80 Aligned_cols=383 Identities=13% Similarity=0.026 Sum_probs=206.8
Q ss_pred CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC--CChhh-H
Q 010575 71 ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRV--WNVAV-W 147 (507)
Q Consensus 71 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~-~ 147 (507)
.+..|+..|..+.-++...|+++.+-+.|++....-+. ....|+.+...|...|.-..|..+++.-.... |+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456666666666666667777766666666554332 44556666666666676666666666655543 32222 2
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-----------CChhHHHHHHHHHhHCC-C
Q 010575 148 NTMVAGYAK-VGDLNNARALFELMTE--------KNVISWTTLIAGYAQM-----------DQPNEAITLFRRMQVEN-V 206 (507)
Q Consensus 148 ~~li~~~~~-~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~-~ 206 (507)
-..-..|.+ .+.+++++++-.+... ..+..|..+.-+|... ....++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222222222 3444444444433332 1233444444433221 11345556666665543 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHH
Q 010575 207 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMI 283 (507)
Q Consensus 207 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~ 283 (507)
.|+...|..+ -|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |......-+
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2333333222 34555667777777777766655566666666666666677777777666554431 111000001
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERA---------------------RV-----KP--NEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~---------------------g~-----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
..-..-++.++++.....+... |. .| ...++..+..-....+........
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1111123333333332222110 00 00 011222111111100000000000
Q ss_pred HhHHhhCCCCC--------hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 336 IMKSRYGIEPK--------IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 336 ~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
+. .....|+ ...|......+.+.++.++|...+.++ +..| ....|......+...|..++|.+.|..+
T Consensus 633 -Lp-~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LP-SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cC-cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00 0011222 124556677788899999998777776 4444 5556777777888999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHHcCCchHHHH--HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHH
Q 010575 406 IKLEPHNSGNYAILSNIYAILGRWNESGK--IRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKIN 483 (507)
Q Consensus 406 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (507)
+.++|+++.+...++.++.+.|+-.-|.. ++..+.+. +|.+.++|--+.++.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------------------------dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------------------------DPLNHEAWYYLGEVF 764 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHH
Confidence 99999999999999999999998777777 78777643 455667777776665
Q ss_pred HHH
Q 010575 484 GQM 486 (507)
Q Consensus 484 ~~~ 486 (507)
+..
T Consensus 765 k~~ 767 (799)
T KOG4162|consen 765 KKL 767 (799)
T ss_pred HHc
Confidence 544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-07 Score=81.46 Aligned_cols=381 Identities=10% Similarity=0.057 Sum_probs=213.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.-+..+.++..|+.+++--...+-+-...+-..+..++.+.|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788999999998876654322222333344556679999999999999887754 56677777787777788999
Q ss_pred HHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC
Q 010575 128 YDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 207 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 207 (507)
.+|..+-..... +...-..|.....+.++-++-..+-+.+.+.. .---+|.+.....-.+.+|+++|+..+..+
T Consensus 108 ~eA~~~~~ka~k---~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK---TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHhhCCC---ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 999988877654 44455566677777788777766666655422 222344555555567899999999988753
Q ss_pred CCHHHHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHH--HHHHhcCC---------
Q 010575 208 PDEIAMLAAL-SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS--GKIGKAL--QVFENMKN--------- 273 (507)
Q Consensus 208 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~--~~~~~~~~--------- 273 (507)
|+-...+.-+ -+|.+..-++.+.+++.-..+.- +.++...|....-..+. |+..+.+ .+-+...+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 4444444433 35667777788888887666542 33333444333333322 2221111 11111110
Q ss_pred -CC---------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCc
Q 010575 274 -KS---------------------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-----CCHVGL 326 (507)
Q Consensus 274 -~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~g~ 326 (507)
.| +.+-..|+--|.++++..+|..+.+++.. ..|-......+..+ ......
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11 11222344445666666666666555432 12222222222211 111122
Q ss_pred HHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010575 327 VELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMP--FEANAAIWGSLLAASNIYGDVELGECALQ 403 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (507)
..-|.+.|+..-+. +..-|. .--.++...+.-..++++.+.+++.+. ...|...-..+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 34444555444322 222221 122234444444556666666666552 22233333446667777777777777776
Q ss_pred HHhccC-CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 404 HLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 404 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
++...+ .+.......|+++|.+.|+.+-|.+++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 665444 222333345667777777777776666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-08 Score=91.66 Aligned_cols=220 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 185 YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 185 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
.....+|.+|+.+++.+++... -..-|..+.+.|+..|+++.|.++|.+.- .++--|..|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444555555555555554332 22334455555666666666655554321 223445556666666666
Q ss_pred HHHHHhcCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 265 LQVFENMKNKS--VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
.++-.+...|. +..|-+-..-+-.+|++.+|..++-... .|+. .|..|-+.|..+..+++.++-..
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 66655554432 2344444444555555555555543322 2221 33445555555555555443321
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
..-..+...+..-|...|++..|...|-+.+ -|.+-++.|...+-+++|-++.+. .+-.+ .....+..
T Consensus 879 -d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriakt---egg~n--~~k~v~fl 946 (1636)
T KOG3616|consen 879 -DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKT---EGGAN--AEKHVAFL 946 (1636)
T ss_pred -hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhc---ccccc--HHHHHHHH
Confidence 1112344445555566666666666655553 244444455555555444333221 11112 22333333
Q ss_pred HHHcCCchHHHHHHHHH
Q 010575 423 YAILGRWNESGKIRKVM 439 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~ 439 (507)
+.+.=--+.|.+++.+.
T Consensus 947 waksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHhhCcHHHHHHHHhh
Confidence 34433335666666553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-09 Score=94.21 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----hhcC
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL----GRAG 361 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 361 (507)
+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++ ...+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCch
Confidence 33445555555544321 2333444445555555555555555555542 22222 112222222 2223
Q ss_pred CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 010575 362 YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW-NESGKIRKV 438 (507)
Q Consensus 362 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 438 (507)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++++.+|+++.++.+++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 456666666655 23345556666666666666666666666666666666666666666666666665 445556666
Q ss_pred HH
Q 010575 439 MR 440 (507)
Q Consensus 439 ~~ 440 (507)
+.
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-06 Score=81.26 Aligned_cols=384 Identities=12% Similarity=0.018 Sum_probs=207.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 47 TIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
=+..+..+|++++|.....++...+ +-|...+..-+-++.+.+.++.|+.+.+.-.. ...+...+-.=.-+..+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 3456678899999999999999854 44556677777888899999999855432211 11111211122334457899
Q ss_pred hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH-------------------------
Q 010575 127 IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL------------------------- 181 (507)
Q Consensus 127 ~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l------------------------- 181 (507)
.|+|+..++..... +..+...-...+.+.|++++|.++|+.+.+.+...+...
T Consensus 95 ~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 95 LDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred HHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 99999999955544 445666667888999999999999999965333222222
Q ss_pred ---------HHHHHhCCChhHHHHHHHHHhHCC-------CCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 182 ---------IAGYAQMDQPNEAITLFRRMQVEN-------VKPDEI-------AMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 182 ---------i~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
...+...|++.+|+++++...+.+ -..+.. .-..+.-.+-..|+.++|..++..+++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 223344455555555554442111 000000 011122223344555555555544444
Q ss_pred cCCCCchhH----HHHHHHHHHhcCCHH--HHHHHHHhcCCCCh--------------hHH-HHHHHHHHHcCChHHHHH
Q 010575 239 YGLNTIVPL----NNALIDMYAKSGKIG--KALQVFENMKNKSV--------------ITW-TTMIAGLALHGLGREALD 297 (507)
Q Consensus 239 ~~~~~~~~~----~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~--------------~~~-~~l~~~~~~~~~~~~A~~ 297 (507)
.. ++|... .|.|+. .....++- .++..++....... +.. +.++..| .+..+.+.+
T Consensus 253 ~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~ 328 (652)
T KOG2376|consen 253 RN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRE 328 (652)
T ss_pred hc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 43 222111 111111 11111100 11111111111000 001 1111111 122233332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHh---
Q 010575 298 MFSRMERARVKPNEITFIAILSACC--HVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLR--- 371 (507)
Q Consensus 298 ~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--- 371 (507)
+..... +..|. ..+..++..+. +...+.++..++....+. .+-. ..+....+.....+|+++.|.+++.
T Consensus 329 ~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 222211 22333 33444444332 222467777777777653 2222 4555667788889999999999998
Q ss_pred -----hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCC---CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 372 -----RM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK----LEPH---NSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 372 -----~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
.. .....+.+...+...+.+.++.+.|..++.++++ ..+. ....+..++..-.+.|+-++|...+++
T Consensus 404 ~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 44 2344556666777778888888888888888854 1222 223344555555678999999999999
Q ss_pred HHhCCC
Q 010575 439 MRDMGV 444 (507)
Q Consensus 439 ~~~~~~ 444 (507)
+.+.+.
T Consensus 484 l~k~n~ 489 (652)
T KOG2376|consen 484 LVKFNP 489 (652)
T ss_pred HHHhCC
Confidence 986433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.9e-07 Score=84.12 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=185.7
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 197 (507)
-+...|+++.|...|-+... ....+.+......|.+|+.+++.+....+. -|..+...|...|+++.|.++
T Consensus 715 hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHH
Confidence 34445666666665544322 234456667788999999999988865443 477788899999999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 277 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (507)
|.+.- .+.-.|..|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+..|+.
T Consensus 788 f~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~- 855 (1636)
T KOG3616|consen 788 FTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK- 855 (1636)
T ss_pred HHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-
Confidence 86542 24456778999999999988876554 4455566777777778889999999999999888875
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..|-+.|..+..+++.++-... .-..|...+..-+...|++..|...|-+... |.+-+++|
T Consensus 856 ----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmy 918 (1636)
T KOG3616|consen 856 ----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMY 918 (1636)
T ss_pred ----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHh
Confidence 467888999999888887753321 1224566677778888999988887766542 34456667
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHH-----HHH------HHHHHHHHcCCHHHH-------------HHHHHHHhccCCCCC
Q 010575 358 GRAGYLQEAEKLLRRMPFEANAA-----IWG------SLLAASNIYGDVELG-------------ECALQHLIKLEPHNS 413 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~------~l~~~~~~~g~~~~A-------------~~~~~~~~~~~p~~~ 413 (507)
...+-+++|.++-+.-+. .|.. .|. ..+..+-++|-.+.| ..+-+-..+ -.-+
T Consensus 919 k~s~lw~dayriaktegg-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~ 995 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMG 995 (1636)
T ss_pred hhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCc
Confidence 677777777776655421 1111 110 111222333333333 333322222 2224
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.....++..+...|++++|.+.+-+..
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHh
Confidence 567777778888889888877665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-08 Score=88.66 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=108.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVE 328 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 328 (507)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4455667777777777654 45566667778888888888888888888764 334 344445554432 34688
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHL 405 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 405 (507)
.|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+. ...| ++.+...++......|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 89999999876 44677888888888888999999999988876 3334 556777788777888877 7788888998
Q ss_pred hccCCCCC
Q 010575 406 IKLEPHNS 413 (507)
Q Consensus 406 ~~~~p~~~ 413 (507)
....|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-06 Score=82.71 Aligned_cols=196 Identities=12% Similarity=-0.006 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV-KPNE--ITFIAILSA 320 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~ 320 (507)
....+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 333445566667777777777766554 2344566666677777777777777776665421 1222 234456666
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HhhC----CCCCCHHHHHHHHHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQY-G--CMIDLLGRAGYLQEAEKL---LRRM----PFEANAAIWGSLLAASN 390 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~ 390 (507)
+...|++++|..+++++.......+..... + .++..+...|....+.++ .... +.............++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777777777777777764321111111111 1 222222333322222222 1111 11111122224555667
Q ss_pred HcCCHHHHHHHHHHHhccC-C--------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 391 IYGDVELGECALQHLIKLE-P--------HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
..|+.+.|...++.+.... . .........+.++...|++++|.+.+......
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888874421 1 12345566777888999999999999888643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-06 Score=81.63 Aligned_cols=341 Identities=15% Similarity=0.113 Sum_probs=185.5
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 40 DVYLYNTTIKALCQTDNPLNAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
|+..-...+.++...+-+.+.+++++++.-.+ +.-+...-+.|+-...+ -+...+.+..+++-..+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 44455566677777777777777777765321 11111222333333222 24444555554443322 11 23
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 197 (507)
.......+-+++|..+|+...- +....+.|+. ..++++.|.+.-++..+| ..|..+..+-.+.|...+|++-
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHH
Confidence 3445556667777777776543 3333444443 245677777776666544 5688888888888888888877
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 277 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (507)
|-+. .|+..|..+++.+.+.|.+++-..++....+..-.|.+. +.|+-+|++.+++.+.+.++. -||..
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVA 1195 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCch
Confidence 6443 356678888888888899988888888887776666655 468888888888877666542 34444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
....+..-|...|.++.|.-+|.. ..-|..|...+...|++..|...-+++ .+..+|..+..+|
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHH
Confidence 444555555555555555544432 223444444444555555444332222 1344444444444
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
...+.+.-|.-. .+.+-....-..-++.-|...|-+++-+.+++..+.+...+...+..|+-.|.+
T Consensus 1260 vd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1260 VDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 443333222100 000111222334444445555555555555555555544444444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-06 Score=81.10 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=128.4
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCC-CCcH-HHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHH---HHH
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGL-DSDV-HVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNT---MVA 152 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~---li~ 152 (507)
|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++.....| +...+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 88 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFG 88 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHH
Confidence 44445555566666666555555544332 1121 1122223345566777777777777666655 2222221 111
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010575 153 GYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 229 (507)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 229 (507)
.....+..+.+.+.+......+ ......+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~-------------------------- 142 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE-------------------------- 142 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------
Confidence 1111233333333333211111 11222333344445555555555555444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 230 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SV--ITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
.. +.+...+..+..+|...|++++|...++...+. +. ..|..+...+...|++++|..++++.
T Consensus 143 ---------~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 ---------LN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred ---------hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33 222334444444555555555555555443321 11 12334555556666666666666665
Q ss_pred HHCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH---HHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 010575 303 ERARV-KPNEITF-I--AILSACCHVGLVELGRRY---FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP- 374 (507)
Q Consensus 303 ~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 374 (507)
..... .+..... + .++.-+...|....+.+. ......................++...|+.++|..+++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 43211 1111111 1 122222223322222221 11111100000111111244556667777777777776651
Q ss_pred -CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 375 -FEA---------NAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 375 -~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
... ..........++...|+.++|.+.+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 1112222333567888999998888888653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-07 Score=88.18 Aligned_cols=418 Identities=13% Similarity=0.026 Sum_probs=251.2
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-C--cccHHHHHHH
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-D--NYSFPFVLKA 85 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~--~~~~~~l~~~ 85 (507)
.|..|...|+...+...|.+.|++.-+ .+...+......|++..+++.|..+.-..-+. .| - ...|....-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcccc
Confidence 567777788777778888888887554 56677888889999999999998883332221 11 1 1122233334
Q ss_pred HHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh-hhHHHHHHHHHhcCCHHHHH
Q 010575 86 VVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV-AVWNTMVAGYAKVGDLNNAR 164 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 164 (507)
+.+.++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.++....|+. ..---..-..+..|.+.+|.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 56777888888888888887644 77889999999999999999999998888776632 22222234455678888888
Q ss_pred HHHHhcCCC----------ChhHHHHHHHHHHhCCChhHHHHHHHH-------HhHCCCCCCHHHHHHHHHH--------
Q 010575 165 ALFELMTEK----------NVISWTTLIAGYAQMDQPNEAITLFRR-------MQVENVKPDEIAMLAALSA-------- 219 (507)
Q Consensus 165 ~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~~~~~~~~~~~~~ll~~-------- 219 (507)
..+..+... -..++-.+...+...|-..+|..+++. ........+...+..+-++
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888777631 112222222222323322233222222 2111111111111111111
Q ss_pred ---------------HhccCCH---H---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----CCHHHHHHHHHh
Q 010575 220 ---------------CAQLGAV---E---LGEWIHNYIEQYGLNTIVPLNNALIDMYAK----S----GKIGKALQVFEN 270 (507)
Q Consensus 220 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~A~~~~~~ 270 (507)
.-..+.. | .+.+.+-.-. ....+...|..|+.-|.+ . .+...|...+..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 1111111 1 0011110000 111123333334333332 1 123356666665
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-C
Q 010575 271 MKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-K 346 (507)
Q Consensus 271 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 346 (507)
..+ .+..+|+.|.-. ...|++.-|...|-+-.... +....+|..+.-.+.+..+++.|...|..... +.| +
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~n 883 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLN 883 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh---cCchh
Confidence 443 566778777655 56677777777777665542 33556777787788888999999999998874 344 4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH----------HHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANAAIWGSLLAASNIYGDVELGECA----------LQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~----------~~~~~~~~ 409 (507)
...|..........|+.-++..+|..- +..|....|..........|+.++-+.. +++.+.-.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 566655555556778888888888752 2345555555555555666666654444 44446678
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|++..+|...+....+.+.+++|.+...+.
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-06 Score=90.78 Aligned_cols=324 Identities=14% Similarity=0.048 Sum_probs=210.2
Q ss_pred HHHhcCChHHHHHHHHhcccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC----C----C--h--hHHHHHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRV--WNVAVWNTMVAGYAKVGDLNNARALFELMTE----K----N--V--ISWTTLIAGY 185 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~ 185 (507)
.....|+++.+...++.+.... .+..........+...|++++|...+..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4455678888777777764321 1222233444555678999999888876532 1 1 1 1222334556
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQYGL---NT--IVPLNNALIDMYA 256 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 256 (507)
...|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763211221 2344555667789999999999888765321 11 1234556677888
Q ss_pred hcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010575 257 KSGKIGKALQVFENMKN-------KS----VITWTTMIAGLALHGLGREALDMFSRMERA--RVKPN--EITFIAILSAC 321 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 321 (507)
..|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876543 11 123445566677789999999999887653 11122 23444566677
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHhhCCC-C-CCH----HHHHHHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQY-----GCMIDLLGRAGYLQEAEKLLRRMPF-E-ANA----AIWGSLLAASN 390 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~----~~~~~l~~~~~ 390 (507)
...|+++.|.+.+..+............+ ...+..+...|+.+.|..++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998886421111111111 1122445568999999999877621 1 111 12345666788
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 391 IYGDVELGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..|+.++|...+++++... +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999997642 1223467788999999999999999999987433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-08 Score=80.76 Aligned_cols=147 Identities=10% Similarity=0.094 Sum_probs=114.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 283 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457788888776544332221 11 012235677888888888776 446678899999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAAS-NIYGD--VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
+++|...|+++ ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 666777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 010575 438 VMRDMG 443 (507)
Q Consensus 438 ~~~~~~ 443 (507)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-08 Score=77.25 Aligned_cols=91 Identities=7% Similarity=-0.114 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666677777777777665 3333 55566667777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHH
Q 010575 428 RWNESGKIRKVMR 440 (507)
Q Consensus 428 ~~~~A~~~~~~~~ 440 (507)
++++|++.++...
T Consensus 107 ~~~eAi~~~~~Al 119 (144)
T PRK15359 107 EPGLAREAFQTAI 119 (144)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-08 Score=84.37 Aligned_cols=182 Identities=13% Similarity=-0.011 Sum_probs=119.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-V---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITF 314 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~ 314 (507)
.....+..+...+...|+++.|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455566677777788888888888877654 21 1 35566777778888888888888887765221111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 010575 315 IAILSACCHV--------GLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 385 (507)
Q Consensus 315 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 385 (507)
..+..++... |++++|.+.|+.+... .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444555443 6677777777777754 3332 22222211100 00000 0111245
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...+...|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999999877654 68899999999999999999999988644
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-07 Score=76.17 Aligned_cols=399 Identities=10% Similarity=0.007 Sum_probs=239.9
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS 78 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 78 (507)
.-.|+.-..--+++.+..+.+..++++|++++..-.+ | +......|...|....++..|-..|+++.. ..|...-
T Consensus 2 ~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~q 79 (459)
T KOG4340|consen 2 AGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQ 79 (459)
T ss_pred CcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHH
Confidence 3345555555567788888899999999999876544 3 566778888888999999999999999987 4566555
Q ss_pred HHH-HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHH
Q 010575 79 FPF-VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI----QMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAG 153 (507)
Q Consensus 79 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~ 153 (507)
|.. -...+.+.+.+..|+++...|... ++ ..+..+ ......+++..+..++++.+..+ +..+.+.....
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC-ccchhccchhe
Confidence 543 235567888999999998887542 22 222222 22345789999999999988531 56666677777
Q ss_pred HHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC-------------CCHH-----
Q 010575 154 YAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-------------PDEI----- 211 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~----- 211 (507)
..+.|+++.|.+-|+...+ ....+|+.- -+..+.++++.|++...+..++|++ ||..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 7889999999999998876 234566644 4556789999999999999887754 2211
Q ss_pred ----------HHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHH---HHHHHhcCCCChh
Q 010575 212 ----------AMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKA---LQVFENMKNKSVI 277 (507)
Q Consensus 212 ----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~ 277 (507)
.++.-...+.+.++++.|.+.+..|.-+ ....|+.+...+.-.-. .+++.+. ..++-.+..-...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence 1222233356778888888888777533 23345555443322111 2223222 2333333223457
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACC-HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
||..++-.||++.-++-|-.++.+-...-.+ .+...|+ |+.++. -.-.++++.+-++.+.+.. .-.......-+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQ 388 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999999999999988887653221111 1223333 333332 3345666665555443310 000000000011
Q ss_pred HHhhcCCHHHHH-HHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 356 LLGRAGYLQEAE-KLLRRMP--FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 356 ~~~~~g~~~~A~-~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
. .+..+-++|+ ..++... ...-......-.+.+.+..|+..+++.|+.-.+...++..
T Consensus 389 e-~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 389 E-ARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred H-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 1 1111111221 1222110 0001112233344567788999999999988876666443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-05 Score=74.29 Aligned_cols=386 Identities=13% Similarity=0.123 Sum_probs=189.6
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--HccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH
Q 010575 52 CQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYD 129 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 129 (507)
...+++..|+.....+.++ .|+.. |..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3446667777776666653 24432 34444444 4677777777777666555544 66677777777777777777
Q ss_pred HHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHHHHHHHHHHhCC-Ch---------hHHH
Q 010575 130 ARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN----ARALFELMTEKNVISWTTLIAGYAQMD-QP---------NEAI 195 (507)
Q Consensus 130 A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a~ 195 (507)
|..+|++.....|+......+..+|.+.+++.+ |.+++...++. +..+-++++...+.- .. .-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 777777777777776666666677777665543 45555544432 222233333333221 11 2234
Q ss_pred HHHHHHhHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 196 TLFRRMQVEN-VKPDEIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 273 (507)
Q Consensus 196 ~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 273 (507)
+.++.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444433 11111112222333445666777766663 333322233334444455666666666665555554443
Q ss_pred CChhHHHHHHHHH----------------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH----
Q 010575 274 KSVITWTTMIAGL----------------ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY---- 333 (507)
Q Consensus 274 ~~~~~~~~l~~~~----------------~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~---- 333 (507)
.+..-|...+..+ ...+..+...+..++......+......--+..-+-.-|+.+++...
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 2111122211111 11112222222222222110010000111111111223444433222
Q ss_pred --------------------------HHHhHHhhCCCCChh-------HHHHHHHHHhhcCC-----HHHHHHHHhhC--
Q 010575 334 --------------------------FNIMKSRYGIEPKIE-------QYGCMIDLLGRAGY-----LQEAEKLLRRM-- 373 (507)
Q Consensus 334 --------------------------~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~~~~~~~-- 373 (507)
+.... +..++.. .+.+.+..-.-.|. -+.-..++++.
T Consensus 335 fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 335 FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred hCCCcHhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 22111 1111111 01111111111221 11222222211
Q ss_pred ----C------CCCCH---------HHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 374 ----P------FEANA---------AIWGSLLAASNIYGDV---ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 374 ----~------~~~~~---------~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+ .-|.. -+.+.|+..+.+.++. -+|+.+++..+...|.|...-..++++|.-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 1 11211 2345677788877764 578888888899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 010575 432 SGKIRKVMRDMGVK 445 (507)
Q Consensus 432 A~~~~~~~~~~~~~ 445 (507)
|.+.++.+.-.++.
T Consensus 492 a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 492 AYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHhcchHHhh
Confidence 99999998655553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-05 Score=86.16 Aligned_cols=259 Identities=14% Similarity=0.011 Sum_probs=139.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhCCChhHHHHHHHHHhHC----C-CCCCHHHHHHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTE----KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVE----N-VKPDEIAMLAALS 218 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~ 218 (507)
..+...|++++|...++.... .+. ...+.+...+...|++++|...+++.... | ..+...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 344456666666666655432 111 23344555566677777777776665532 1 0111223444555
Q ss_pred HHhccCCHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQY----GLN--T-IVPLNNALIDMYAKSGKIGKALQVFENMKN------K--SVITWTTMI 283 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~ 283 (507)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 666677777777766655432 211 1 123344455556666777777776665432 1 122334455
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERA----RVKPNEITF--IAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 354 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 354 (507)
..+...|++++|...+.+.... +........ ...+..+...|+.+.|...+...... ..... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHH
Confidence 5666778888887777776432 111111011 11123344567777777776665431 11111 11134566
Q ss_pred HHHhhcCCHHHHHHHHhhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 355 DLLGRAGYLQEAEKLLRRM-------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.++...|++++|...++++ +..+ ...+...+..++...|+.++|...+.+++++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6777788888887777765 1111 1234555666777888888888888888775543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-05 Score=76.72 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=49.4
Q ss_pred cCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHH----------hCCCccCCceeEEEECCEEEEEEeCC-CCCCChHHH
Q 010575 408 LEPH-NSGNYAILSNIYAILGRWNESGKIRKVMR----------DMGVKKMPGCSYIEVSKRVHEFVAGD-TSHPDFDRL 475 (507)
Q Consensus 408 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 475 (507)
++|+ ||.....-++.+....++++|..++-..+ .+|++... ++.+...-. ...|.-.+-
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte---------e~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE---------EFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH---------HHHHhcCcCcCCCccHHHH
Confidence 4554 56777777788888888888887765543 23332111 111111111 255666666
Q ss_pred HHHHHHHHHHHHhcC-cccCCCcc
Q 010575 476 YQILCKINGQMKFAE-HLQNEFSG 498 (507)
Q Consensus 476 ~~~l~~~~~~~~~~g-~~~~~~~~ 498 (507)
...|+++.+...++| |+.-++..
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH
Confidence 778899999998888 66544433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-05 Score=76.00 Aligned_cols=376 Identities=14% Similarity=0.154 Sum_probs=261.3
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCC-CCCcc-----cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKS-KPDVY-----LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
.||.-.+.-+.++...+-+.+-.++++++. .++++ .-|.|+-...+ -+..+..+..+++-..+ .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 466667778888888898999999998865 34443 33444444344 34556666666654432 12 3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLN 161 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 161 (507)
+...+...+-+++|..+|+.. ..+....+.|+.- -+.++.|-+.-++.. ....|..+..+-.+.|.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchH
Confidence 455667777889999998765 4456666666553 467888888877766 4578999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 162 NARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
+|++-|-+. .|+..|..++....+.|.|++-.+++....+..-.|... +.++-+|++.+++.+.+.++ .
T Consensus 1122 dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------A 1190 (1666)
T ss_pred HHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------c
Confidence 999988665 466789999999999999999999998888776666554 46788999999987766654 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
-|+......+.+-+...|.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.+|
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 5777777788888889999999988886 4557888889999999999988765543 2567888888888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIE--PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
...+.+..|. +. |+. ....-..-++..|...|-+++.+.+++.. +... .-..|.-|...|.+- ++++
T Consensus 1260 vd~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~k 1330 (1666)
T KOG0985|consen 1260 VDKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEK 1330 (1666)
T ss_pred hchhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHH
Confidence 8777665542 22 433 34455667888888888898888888876 4332 333455555555443 3444
Q ss_pred HHHHHHHHhc-cC-C------CCCchHHHHHHHHHHcCCchHHHH
Q 010575 398 GECALQHLIK-LE-P------HNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 398 A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
-.+.++-... ++ | +....|..+.-.|.+-..|+.|.-
T Consensus 1331 m~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1331 MMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4444443321 11 1 123356666666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-06 Score=78.35 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 261 IGKALQVFENMKN---KSVITWTTMIAGLALHGLG--REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 261 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
+++++..++.+.+ .+..+|+.....+.+.|+. ++++.+++++.+... -|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555554443 2333444443333444432 456666666666432 255666666666666677777777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHH
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRA---GYL----QEAEKLLRRM-PFEA-NAAIWGSLLAASNIY----GDVELGECAL 402 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~A~~~~ 402 (507)
++++. -+.+...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 77653 233455555555444433 222 3555555444 4344 556777777777663 4456788889
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILG------------------RWNESGKIRKVMR 440 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 440 (507)
.++++.+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 9988889999999999999998743 2366888877774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=74.57 Aligned_cols=123 Identities=13% Similarity=0.019 Sum_probs=100.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.++++..+. .|+. +..+...+...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666654 4443 55567788899999999999999885 33457788899999999999999999999988 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
.| +...+..+..++...|++++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 677889999999999999999999999999999999999888766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-06 Score=84.12 Aligned_cols=373 Identities=14% Similarity=0.047 Sum_probs=218.5
Q ss_pred chHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 010575 57 PLNAVILYNKIQASALRPD-NYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
...|+..|-+..+. .|+ ...|..|...|....+...|.+.|+...+.+.. +......+.+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 55566655555442 232 234677777777666777888888877666533 56667777888888888888888755
Q ss_pred hcccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC
Q 010575 136 ELSLRVW---NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 209 (507)
Q Consensus 136 ~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 209 (507)
...+..| -...|....-.|.+.++...|+.-|+.... .|...|..++.+|...|++..|.++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 5444433 223344455566777888888888877664 3556777888889999999999998888766 3454
Q ss_pred HHHHHHH--HHHHhccCCHHHHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-------CC-
Q 010575 210 EIAMLAA--LSACAQLGAVELGEWIHNYIEQYG------LNTIVPLNNALIDMYAKSGKIGKALQVFENM-------KN- 273 (507)
Q Consensus 210 ~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~- 273 (507)
. +|... ...-+..|.+.++...+....... ...-..++-.+...+.-.|=..+|...++.- ..
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 22222 223456777888777777665431 0011111111112222222222222222221 11
Q ss_pred ---CChhHHHHHHHHHH---HcC--ChH-HHHHH-HHHHHHCCCC--------------------CCHHHHHHHHHHHhc
Q 010575 274 ---KSVITWTTMIAGLA---LHG--LGR-EALDM-FSRMERARVK--------------------PNEITFIAILSACCH 323 (507)
Q Consensus 274 ---~~~~~~~~l~~~~~---~~~--~~~-~A~~~-~~~m~~~g~~--------------------p~~~~~~~l~~~~~~ 323 (507)
.+...|-.+..++. ... -+. -...+ +.+....+.- .+..+|..|+..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 12222222222111 000 000 00000 1111111111 122334334333322
Q ss_pred -------c-CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcC
Q 010575 324 -------V-GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYG 393 (507)
Q Consensus 324 -------~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 393 (507)
. .+...|+..++...+. ...+..+|+.|.-. ...|++.-|...|-+. ..+....+|..+...+....
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 2234677777777642 23345566665544 6667777777777655 23346778999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|++.|...|.++..++|.+...|...+.+....|+.-++..+|..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999877
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-05 Score=76.07 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=148.2
Q ss_pred CChHHHHHHHH--HHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-C--------CCCCc
Q 010575 8 QNNHLLSRFID--SCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-A--------LRPDN 76 (507)
Q Consensus 8 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~ 76 (507)
-|+.|-..+++ .|...|+.+.|.+-.+.+... ..|..+.+.|.+.++.+-|.-.+-.|... | ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35566666665 466789999999988888775 45999999999999998888777776542 1 1233
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010575 77 YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK 156 (507)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 156 (507)
.+=..+.-.....|.+++|+.+|++..+.+ .|=..|...|.+++|.++-+.=.... =-.||.....-+-.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHh
Confidence 222333444568899999999999887642 34456778899999998876432221 22456666666677
Q ss_pred cCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 157 VGDLNNARALFELMTEK-----------------------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
.++.+.|++.|++...+ |...|.-.....-..|+.+.|+.+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 88899999999876532 222233233333344555555555544432 2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 214 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 214 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
-.+++..|-.|+.++|..+-++ .-|......|.+.|-..|++.+|..+|-+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344445555666666555443 223344445666666666666666666544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.2e-09 Score=59.73 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.2
Q ss_pred cCCCCChHHHHHHHHHHHccCChhHHHHHhccCC
Q 010575 4 RGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS 37 (507)
Q Consensus 4 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 37 (507)
.|++||..+|+.||+.||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999884
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-07 Score=90.86 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=165.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 313 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 313 (507)
|.....|-..|......++.++|++++++.... -...|.+++......|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777888888999999999999887652 2357888888888888888999999998874 222356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIWGSLLAAS 389 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 389 (507)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-+.|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888999999999999999999999766 56788999999999999999999999887 3333 344555566667
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.+.||.+++..+|+..+.-.|.....|..+++.-.+.|+.+.+..+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999876653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-07 Score=84.02 Aligned_cols=250 Identities=10% Similarity=-0.016 Sum_probs=179.5
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
..-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.++.+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344677888888888888887765 3456677777777788888888888888888776 55677777888888888888
Q ss_pred HHHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 262 GKALQVFENMKNKS-VITWTTMI---------AGLALHGLGREALDMFSRME-RARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 262 ~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
..|.+.++.-.... ...|.... ..+.....+....++|-++. ..+..+|+.....|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888877643211 11110000 11122223344555555554 445446777777787778889999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 331 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
...|+.+... -+-|...||.|...+....+.++|+..|+++ .++|+- .....|..+|...|.+.+|...|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999852 2446789999999999999999999999998 777854 47778999999999999999999999765
Q ss_pred CCC-----C-----CchHHHHHHHHHHcCCchHHHHH
Q 010575 409 EPH-----N-----SGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 409 ~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
.+. . ..+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 1 24677776666666766644443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-07 Score=88.99 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 353 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (507)
++..+..|.....+.|++++|..+++...+. .|+. .....++.++.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4566777777777777777777777777764 4544 4555666777777777777777777775 223345556666
Q ss_pred HHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..++.+.|++++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+-...|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777777777777776 2233 3567777777777777777777777777665544334433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.9e-07 Score=74.11 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=128.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 55566777788888888777775443 233445555678888899999999999999986 668889999999999999
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010575 360 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
.|++++|..-|.+. .+.| ++...+.+...+.-.||.+.|..++..+....+.++.+-.+|+.+....|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988877 4444 556788888899999999999999999988888889999999999999999999998875
Q ss_pred HH
Q 010575 438 VM 439 (507)
Q Consensus 438 ~~ 439 (507)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-07 Score=86.29 Aligned_cols=212 Identities=13% Similarity=0.032 Sum_probs=160.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCC
Q 010575 214 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGL 291 (507)
Q Consensus 214 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (507)
..+...+.+.|-...|..+++++. .+..++.+|+..|+..+|..+..+-.+ |+...|..++...-...-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345556667777777777776644 445677888888888888777665544 566777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
+++|.++++..... .-..+.....+.++++++.+.|+.-.+. .+....+|..+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 77887777654332 1112222233468888888888877753 34456788888888899999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 372 RM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 372 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.. ...| +...|+++-.+|.+.|+-.+|...+.++++-+-.+..+|.+...+..+.|.|++|++.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77 5566 456899999999999999999999999999888889999999999999999999999999886433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=74.45 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSL 385 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 385 (507)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++. +..+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333225566677788888888888777654 44556667777999999999999999999998 556688999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..+|.+.|+++.|...|.+++++.|+++...++++..|.-.|+++.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999886443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0002 Score=66.67 Aligned_cols=129 Identities=7% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
-|+.+|+.||+-+... .++++.+.++++.. .-| .+..|..-|..-...++++.++.+|.+.+..-. +...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 4889999999987766 99999999999987 344 566788889999999999999999999987644 46666665
Q ss_pred HHHHHh-cCChHH----HHHHHHhcccC-CC---ChhhHHHHHHHH---------HhcCCHHHHHHHHHhcCC
Q 010575 118 IQMYAS-CKCIYD----ARKVFDELSLR-VW---NVAVWNTMVAGY---------AKVGDLNNARALFELMTE 172 (507)
Q Consensus 118 ~~~~~~-~g~~~~----A~~~~~~~~~~-~p---~~~~~~~li~~~---------~~~~~~~~A~~~~~~~~~ 172 (507)
+.--.+ .|+... ..+.|+-.... +. +...|+..+.-+ ....+++...+++.++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 553222 234333 23333333322 22 333455544332 234456667777877764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.8e-06 Score=78.33 Aligned_cols=211 Identities=10% Similarity=0.045 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCC
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQ 190 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 190 (507)
.-..+...+.+.|-...|..+|++ ...|...+.+|+..|+..+|..+..+-.+ ||+..|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Er-------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER-------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh-------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 334455566666666666666663 33455566666666666666665554443 455556666555555555
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
+++|.++.+..... .-..+.....+.++++++.+.++.-.+.. +....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 56666655543221 11111111223456666666665555443 33445555555556666666666666655
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 271 MKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 271 ~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
... | +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.++.|++.+.++..
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 443 2 33566666666666666666666666666554 22334444444455566666666666665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-06 Score=74.05 Aligned_cols=182 Identities=15% Similarity=0.025 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh---HH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-T-IVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVI---TW 279 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~ 279 (507)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|...|++++|...|+.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567778888899999999999999999876421 1 124667788999999999999999999875 2 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHH
Q 010575 280 TTMIAGLALH--------GLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 350 (507)
Q Consensus 280 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (507)
..+..++... |++++|.+.|+++... .|+. .....+..... .. . ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~-~~~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------N-RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------H-HHH--------HHH
Confidence 5666666654 7889999999999876 4443 22222211100 00 0 000 111
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
..+...|.+.|++++|...+++. +..| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999988887 2233 356788899999999999999998888766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-07 Score=69.76 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
......+...+...|++++|.++|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455667778899999999999987 4455 66678899999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998863
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-05 Score=64.55 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 361 GYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 361 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+.+.+|.-+|+++ +..|++.+.+....++...|++++|..+++.++..+++++.++.+++-+-...|+-.+
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 3445555555555 2445555555555555555555555555555555555555555555544444554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=69.31 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
......+...+...|++++|...|+.+ ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666677777777777777766 3233 55667777777777788888888888887778887778888888888
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|++++|...+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-05 Score=80.98 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=137.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLR-VW-----NVAVWNTMVAGYAKVGDLNNARALFELMTEK-N-VISWTTL 181 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l 181 (507)
+...|-..|......+++++|.+++++.... .+ -...|.++++.-...|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666667777777777777777776554 22 2345666666666667777777777776652 2 2456677
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCC
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 260 (507)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-.. .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777664 2234556666777777777777777777766654211 123344445555566777
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHH
Q 010575 261 IGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVE 328 (507)
Q Consensus 261 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~ 328 (507)
.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 77777777766542 3456777777777777777777777777776666543 33444444333444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-06 Score=69.00 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=114.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777655543332221 01223566778888888877753 457788999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLL-GRAGY--LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
..|++.... .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999863 344677788888764 67777 59999999988 4455 66788888889999999999999999999
Q ss_pred ccCCCCCchH
Q 010575 407 KLEPHNSGNY 416 (507)
Q Consensus 407 ~~~p~~~~~~ 416 (507)
+..|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888865433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-08 Score=54.39 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 106 GLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666677777777777777777776666665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00054 Score=63.89 Aligned_cols=427 Identities=14% Similarity=0.137 Sum_probs=255.4
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+.|...|+.|+..+... ..++++++++++.. | ....|..-|+.-.+..+++....+|.+.+..- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 56888999999998887 89999999999875 3 45779999999999999999999999998754 3455566555
Q ss_pred HHHH-ccCCcHHHH----HHHHHHH-HcCCCC-cHHHHHHHHHH---------HHhcCChHHHHHHHHhcccCCC-C---
Q 010575 84 KAVV-KLSTIELGR----EIHCQTV-GTGLDS-DVHVVAALIQM---------YASCKCIYDARKVFDELSLRVW-N--- 143 (507)
Q Consensus 84 ~~~~-~~~~~~~a~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~p-~--- 143 (507)
..-. ..++..... +.|+... +.|+++ +-..|+..+.. |....+++...++|.++..... +
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 5433 233333322 2333332 345443 23455555543 3334456677788888765411 2
Q ss_pred ----hhhHHHHHHHH-------HhcCCHHHHHHHHHhcCC---------CC------------hhHHHHHHHHHHhCCC-
Q 010575 144 ----VAVWNTMVAGY-------AKVGDLNNARALFELMTE---------KN------------VISWTTLIAGYAQMDQ- 190 (507)
Q Consensus 144 ----~~~~~~li~~~-------~~~~~~~~A~~~~~~~~~---------~~------------~~~~~~li~~~~~~~~- 190 (507)
-..|..-|+.. -+...+..|.++++++.. |. +..|-.+|.--..++-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 12222112111 113345566666655431 00 1124344432211111
Q ss_pred -------hhHHHHHHHH-HhHCCCCCCHHHH-H----HHHHHHhccCCH-------HHHHHHHHHHHHcCCCCchhHHHH
Q 010575 191 -------PNEAITLFRR-MQVENVKPDEIAM-L----AALSACAQLGAV-------ELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 191 -------~~~a~~~~~~-m~~~~~~~~~~~~-~----~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
..+..-.+++ |+-.+..|+.... . ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112222 2222333332211 0 111123333433 445555555444333333444433
Q ss_pred HHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 010575 251 LIDMYAKSG---KIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACC 322 (507)
Q Consensus 251 l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 322 (507)
+...--..- ..+.....++++.. .-..+|..++..-.+..-...|..+|.+..+.+..+ +....+.++..+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 332211111 24445555555443 233578888888888888999999999999988777 6667778887776
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C--CCC--CHHHHHHHHHHHHHcCCHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P--FEA--NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~~--~~~~~~~l~~~~~~~g~~~~ 397 (507)
+++.+-|.++|+.=.+++| -++..-...++-+...++-..|..+|++. + ..| ...+|..++.--...|+...
T Consensus 414 -skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred -cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 4899999999998887543 34445567788888999999999999988 2 233 34789999998899999999
Q ss_pred HHHHHHHHhccCCCC----CchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 398 GECALQHLIKLEPHN----SGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 398 A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+.++-++....-|++ ...-..+++-|.-.+.+..-..=++.+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999887666522 123445666777677665554444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.5e-05 Score=67.55 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=132.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 256 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (507)
..+-..+...++.++|+.++.++++.+ |+. ..+..--.++...| +++++...++.+.+.. +.+..+|+.....+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 333444555666777777777776642 333 23333333444445 4567777777766654 344445554444455
Q ss_pred hcCCH--HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc--
Q 010575 257 KSGKI--GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV---GL-- 326 (507)
Q Consensus 257 ~~~~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~-- 326 (507)
+.|+. +++..+++.+.+ .|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 55542 556666666654 45567777777777778888888888888876533 445555554444333 22
Q ss_pred --HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc----CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-----
Q 010575 327 --VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA----GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG----- 393 (507)
Q Consensus 327 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g----- 393 (507)
.+..+.....++. ..+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|....
T Consensus 197 ~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~ 274 (320)
T PLN02789 197 AMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAE 274 (320)
T ss_pred ccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchh
Confidence 2455666655554 2344567777777777663 3446677777665 3333 4556667777765422
Q ss_pred -------------CHHHHHHHHHHHhccCCC
Q 010575 394 -------------DVELGECALQHLIKLEPH 411 (507)
Q Consensus 394 -------------~~~~A~~~~~~~~~~~p~ 411 (507)
..++|.++++.+-+.+|-
T Consensus 275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 275 FRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.4e-05 Score=63.12 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLV 327 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 327 (507)
...|+..|++++|++...... +....-.=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344666666666666666522 2223333334455566667777777777653 244566655555442 3456
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 010575 328 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDV-ELGECALQH 404 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 404 (507)
..|.-+|+++.+ ..+|++.+.+....++...|++++|..+++.+ +...++.+...++..-...|.. +--.+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 777777777765 35677777777777777777777777777766 3333555665555554444443 444566666
Q ss_pred HhccCCCCC
Q 010575 405 LIKLEPHNS 413 (507)
Q Consensus 405 ~~~~~p~~~ 413 (507)
.....|+++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666777753
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-05 Score=76.58 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVWN-VAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 188 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 188 (507)
+...+..|+..|...+++++|.++.+......|+ ...|..+...+.+.++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3445666666666666666666666655555553 23333333344444443333222 233333334
Q ss_pred CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010575 189 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 268 (507)
.++.-+.-+++.|.+. .-+...+-.+..+|.+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4443333344444442 2233355556666666666666666666666665 55556666666666666 666666655
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 269 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
.... ..+...+++.++.++|.++...
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 4432 2244445555555555555553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-05 Score=73.08 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=80.9
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|.++.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456777777777777765 33344555556667777777777777777776 44554 45566677777777777777
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+..++.....+|+++..|..|+.+|...|+..+|.....+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777777766666655554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-05 Score=78.20 Aligned_cols=234 Identities=12% Similarity=0.044 Sum_probs=144.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 219 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 219 (507)
+...|..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 566777778888788888888888776554 22 23444444466666665555443 22 222
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 010575 220 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
.....++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|+.. +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 223333333333444444432 2333556677777777777777777777765 3556777777777777 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 010575 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376 (507)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (507)
.++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 777766543 4445567777777777764 2222333333332222211 1122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
.-..++..+-..|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2344556666777888899999999999999999999999999988873
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-05 Score=63.11 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=130.2
Q ss_pred cCCCchHHHHHHHHHHHc---C-CCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 53 QTDNPLNAVILYNKIQAS---A-LRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
...++++.++++..+... | ..|+..+ |..++-+....|+.+-|..+++.+...- +-+..+...-.-.+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 346778888888877652 3 4455543 5566677778889999999999987763 22333322223335567899
Q ss_pred HHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 128 YDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
++|+++++.+.+..| |..++-.-+...-..|+--+|++-+....+ .|...|.-+...|...|++++|.-.+++++-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999998877 677777777777777777788877776664 5888999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcC
Q 010575 204 ENVKPDEIAMLAALSACAQLG---AVELGEWIHNYIEQYG 240 (507)
Q Consensus 204 ~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 240 (507)
.. +.+...+..+...+.-.| +.+.+.+++...++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 43 234444455555443333 5566777777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-06 Score=79.05 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
.....|+..+...++++.|+.+|+++.+. .|+ ....++..+...++-.+|.+++.+. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455666777778899999999998864 354 3445777777888888888888877 3334 566677777788
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...++++.|..+.+++.+..|++...|..|+.+|.+.|++++|+..++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-05 Score=64.84 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHHcCChHHH
Q 010575 224 GAVELGEWIHNYIEQY---G-LNTIVP-LNNALIDMYAKSGKIGKALQVFENMKNK--S-VITWTTMIAGLALHGLGREA 295 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A 295 (507)
.+.++..+++.++... | ..++.. +|..++-+....|+.+.|..+++.+... + ...-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3556666666655532 2 333332 3334444455566666666666655432 1 11111112223445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C
Q 010575 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P 374 (507)
Q Consensus 296 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 374 (507)
+++++.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666666553 22444554444444445555566666655555 34556666666666666666666666666665 2
Q ss_pred CCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 375 FEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 375 ~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+| ++..+..+...+.-. .+.+.|.++|.++++++|.+...+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 334 333444444443222 2455566666666666664433333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=69.66 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCM 353 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 353 (507)
...+--....+...|++++|+..++.+... .| |+.........+...++..+|.+.++++... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 334444455567789999999999999886 45 4555556677899999999999999999953 565 6667788
Q ss_pred HHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
.++|.+.|++.+|..++++. ..+-|+..|..|..+|...|+..++ ....+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a-----------------~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA-----------------LLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH-----------------HHHHHHHHHhCCCHHH
Confidence 99999999999999999987 3444788999999999999998777 4456678888999999
Q ss_pred HHHHHHHHHhCC
Q 010575 432 SGKIRKVMRDMG 443 (507)
Q Consensus 432 A~~~~~~~~~~~ 443 (507)
|+..+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-05 Score=75.43 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=121.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIA 316 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ 316 (507)
.+.+...+..|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+...++.... .| +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999998876 4 4567788889999999999999999999886 44 4566677
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGD 394 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 394 (507)
+..++.+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++. ...|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 78888999999999999999986 33345788889999999999999999999988 2345555555443 23
Q ss_pred HHHHHHHHHHH
Q 010575 395 VELGECALQHL 405 (507)
Q Consensus 395 ~~~A~~~~~~~ 405 (507)
...-...+++.
T Consensus 232 ~~~~~~~~~~~ 242 (694)
T PRK15179 232 LNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHc
Confidence 33334555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-06 Score=64.77 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=90.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 298 MFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 298 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.+++.... .|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 443 345666777788899999999999998763 3456788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.| +...+..+...+...|++++|...++++++..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888899999999999999999999999876533
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=74.27 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 359 RAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+.+++++|+..|.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 444444444444444 3333 22333333444444444444444444444444444444444444444445554444444
Q ss_pred HHH
Q 010575 437 KVM 439 (507)
Q Consensus 437 ~~~ 439 (507)
++.
T Consensus 173 kKa 175 (304)
T KOG0553|consen 173 KKA 175 (304)
T ss_pred Hhh
Confidence 443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-05 Score=71.85 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 326 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 326 (507)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++.+..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778889999999999888777777778888888888899999998888652 3355666666677888999
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC
Q 010575 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 377 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 377 (507)
++.|+.+.+++.. -.+-+..+|..|..+|...|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999985 233346789999999999999999999999886443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=62.08 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~ 397 (507)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+ ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321110 0122223344455555555555555555 111222 123334445556666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222344555666666666666666666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0028 Score=58.09 Aligned_cols=410 Identities=11% Similarity=0.072 Sum_probs=225.7
Q ss_pred HccCChhHHHHHhccCCC---CCc------ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--Hcc
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDV------YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKL 89 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~ 89 (507)
-+.+++.+|.++|.++-+ .+. ..-+.++.+|..+ +.+.....+....+ ..| ...|-.+..++ .+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHHh
Confidence 378999999999988653 221 2344566666553 44544455555554 234 44566666654 478
Q ss_pred CCcHHHHHHHHHHHHc--CCC------------CcHHHHHHHHHHHHhcCChHHHHHHHHhcccC------CCChhhHHH
Q 010575 90 STIELGREIHCQTVGT--GLD------------SDVHVVAALIQMYASCKCIYDARKVFDELSLR------VWNVAVWNT 149 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~ 149 (507)
+.+..|.+.+..-... +.. +|...-+..++++...|++.++..+++++..+ .++..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888776554 221 12233466778899999999999999998765 358889988
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHhcCCCChhHH----------HHHHHHHHhC--CChhHHHHHHHHHh
Q 010575 150 MVAGYAKVGD---------------LNNARALFELMTEKNVISW----------TTLIAGYAQM--DQPNEAITLFRRMQ 202 (507)
Q Consensus 150 li~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~----------~~li~~~~~~--~~~~~a~~~~~~m~ 202 (507)
++-.+++.=- ++.+.-...++...+...| ..++....-. .+..--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 6666655211 1111112222221121111 1122211111 11222223333333
Q ss_pred HCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 010575 203 VENVKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLN----TIVPLNNALIDMYAKSGKIGKALQVFENMK--NKS 275 (507)
Q Consensus 203 ~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 275 (507)
..-+.|+... ...+...+.+ +.+++..+-+.+....+. .-+.++..++....+.++...|...+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3334455332 2233333333 445554444444433221 123456667777778888888877766543 333
Q ss_pred hhHH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH---HHhccCc-HHHHHHHHHHhHH
Q 010575 276 VITW-------TTMIAGLA----LHGLGREALDMFSRMERARVKPNE-ITFIAILS---ACCHVGL-VELGRRYFNIMKS 339 (507)
Q Consensus 276 ~~~~-------~~l~~~~~----~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~---~~~~~g~-~~~a~~~~~~~~~ 339 (507)
...- ..+-+..+ ..-+..+-+.+|+......+ |. .....|+. -+-+.|. -++|+.+++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2211 11111222 11123334555555555432 32 22223332 2445555 7888899888875
Q ss_pred hhCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHhhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010575 340 RYGIEPKIEQYGCMI----DLLGRA---GYLQ---EAEKLLRRMPFEA----NAAIWGSLLAA--SNIYGDVELGECALQ 403 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (507)
- -+-|...-+.+. ..|..+ ..+. +-...+++.++.| +...-|.|..| +..+|++.++.-.-.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2 122333322221 222221 1122 2223334444444 44556667665 478999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 404 HLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 404 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+.++.| ++.+|..++-++....+++||.+++.+++.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 9999999 699999999999999999999999998863
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-05 Score=67.00 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=161.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCC
Q 010575 150 MVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGA 225 (507)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 225 (507)
....+.+..++.+|+..+...++ | ++.-|..-...+...+++++|.--.+.-++. +|. .......-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34555566666667666666554 2 3344555566666666666666555544432 221 1233333333334444
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH-HHHHHHcCChHHHHHHH
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM-IAGLALHGLGREALDMF 299 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~A~~~~ 299 (507)
..+|...++ +...+ ....++..++.+.. |....|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444443333 00000 11112222222221 222344433 34566778888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhhCCCCChhHHH-------------HHHHHHhhcCCHH
Q 010575 300 SRMERARVKPNEITFIAILS--ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-------------CMIDLLGRAGYLQ 364 (507)
Q Consensus 300 ~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~ 364 (507)
....+.. ++ ..+..+++ ++...++.+.+...|++.+ .+.|+...-. .=.+-..+.|++.
T Consensus 193 ~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 6666542 11 22333333 3445678888888888877 4456533221 1222345789999
Q ss_pred HHHHHHhhC-CC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 365 EAEKLLRRM-PF-----EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 365 ~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+|.+.|.+. .+ .|+...|.....+..+.|+..+|+.-.+.+++++|....+|..-+.++...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 43 445666777777888999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 010575 439 MRDM 442 (507)
Q Consensus 439 ~~~~ 442 (507)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 8644
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.3e-07 Score=63.52 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 360 AGYLQEAEKLLRRM-PFEA---NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 1122 344455567777777777777777777 666666666666667777777777777777
Q ss_pred HHH
Q 010575 436 RKV 438 (507)
Q Consensus 436 ~~~ 438 (507)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.8e-05 Score=60.94 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH--HHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDN----YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDV--HVVAAL 117 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 117 (507)
|..++..+ ..++...+...++.+.... |+. ...-.+...+...|++++|...|+.+......++. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44445444 3666666766677766642 222 12223345556677777777777777766533322 234445
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
..++...|++++|+..++......+....+......+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666677777777777766544433444555555666666666666666554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=73.80 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=48.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
.+...|+++.|+..|+++... .+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555532 1223444444555555555555555555544 2223 33344445555555555555
Q ss_pred HHHHHHHHhccCCCCCchHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l 419 (507)
|+..|+++++++|+++.+...+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555554444333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=58.75 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-RWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 441 (507)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999998764
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=61.36 Aligned_cols=90 Identities=14% Similarity=0.002 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNI 422 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 422 (507)
..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555444 11121 2234444555555555555555555555555443 2345555555
Q ss_pred HHHcCCchHHHHHHHHHH
Q 010575 423 YAILGRWNESGKIRKVMR 440 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~ 440 (507)
+.+.|++++|.+.++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=58.71 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 3334 34567777778888889999999999998888888888888888999999
Q ss_pred CchHHHHHHHHHHh
Q 010575 428 RWNESGKIRKVMRD 441 (507)
Q Consensus 428 ~~~~A~~~~~~~~~ 441 (507)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988887754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=57.89 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999988863
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-06 Score=49.34 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=28.4
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDN 76 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 76 (507)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-05 Score=59.40 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLL 386 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 386 (507)
++..+...+.+.|++++|...|..+...+.-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777888888888877775421111 1345556777788888888888888776 22232 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=62.84 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=88.1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+-|...|..|...|.+.|++..|..-|.+. .+. +++..+..+..++... ....++..+++++++.+|+|.++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567899999999999999999999999988 333 4667777777776443 3568999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.|+..+...|++.+|...|+.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999866553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.6e-05 Score=67.15 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=77.8
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 398 (507)
+.+.+++.+|+..|.+++. -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566788888888888874 22335566666677888888888888877766 55553 45788888888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
++.|+++++++|++......|-.+-.+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888776666655554444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-06 Score=55.59 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+...+...|++++|+..|+++++..|+++.++..++.++.+.|++++|+.+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999888644
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-06 Score=48.01 Aligned_cols=33 Identities=21% Similarity=0.542 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRP 74 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 74 (507)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-06 Score=47.13 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5e-05 Score=62.92 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
...+..+...+...|++++|...|+++ ...|+ ...+..+...+.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777766 22222 3567778888888899999999999999888888888888888
Q ss_pred HHHHcCC
Q 010575 422 IYAILGR 428 (507)
Q Consensus 422 ~~~~~g~ 428 (507)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-05 Score=69.03 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=83.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.....+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++++... .+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999863 336678888889999999999999999999863 234677888999999999
Q ss_pred CCHHHHHHHHhhC-CCCCCHHHHHHHHH
Q 010575 361 GYLQEAEKLLRRM-PFEANAAIWGSLLA 387 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 387 (507)
|++++|...|+++ ...|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55665554444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00034 Score=68.12 Aligned_cols=139 Identities=13% Similarity=0.040 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhHH
Q 010575 274 KSVITWTTMIAGLAL--HG---LGREALDMFSRMERARVKPNE-ITFIAILSACCHV--------GLVELGRRYFNIMKS 339 (507)
Q Consensus 274 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 339 (507)
.|...|...+.+... .+ ...+|..+|++..+. .|+. ..+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677777666433 22 356778888887775 4543 3444333332211 112233333333222
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
....+.++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1012233455555555555566677777766666 45566666666666666677777777777777766666554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.6e-05 Score=62.41 Aligned_cols=94 Identities=11% Similarity=-0.076 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999999988877 22232 347888889999999999999999999999999888888888
Q ss_pred HHHH-------HcCCchHHHHHHHHH
Q 010575 421 NIYA-------ILGRWNESGKIRKVM 439 (507)
Q Consensus 421 ~~~~-------~~g~~~~A~~~~~~~ 439 (507)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=46.10 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCC
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 208 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 208 (507)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0012 Score=52.76 Aligned_cols=133 Identities=12% Similarity=0.018 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C---CCCCHHHH
Q 010575 307 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEANAAIW 382 (507)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~~~~~ 382 (507)
..|+..--..|..+....|+..+|...|++.... -+.-|......+.++....+++..|...++++ . ....+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3667766677888889999999999999988873 34557778888888888899999999988877 2 22244456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+...+...|.++.|+..|+.++..-|+ +..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67788899999999999999999998888 77777888899999998888776665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=53.81 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 393 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 393 (507)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444444555555555555555432 1222344455555555556666666666554 2222 3345556666666667
Q ss_pred CHHHHHHHHHHHhccCC
Q 010575 394 DVELGECALQHLIKLEP 410 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p 410 (507)
+.+.|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777766666555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.025 Score=56.52 Aligned_cols=91 Identities=7% Similarity=0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHhccCcHHH---HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVEL---GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLLA 387 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~ 387 (507)
.+.|+..+.+.++... |+-+++.... .-+.|..+--.++..|+-.|-+..|.++|+.+. ++-|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 4566777877777653 4444444443 223345555678899999999999999999884 222332222 223
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 010575 388 ASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~ 407 (507)
.+...|++..+...+....+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHhcccchhHHHHHHHHHH
Confidence 34455666666555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.001 Score=52.74 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=77.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
...-+-..|++++|..+|+-+ -. .-+..-|..|..+|...+++++|+..|..+..++++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456899999999999977 22 2366678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010575 431 ESGKIRKVMRD 441 (507)
Q Consensus 431 ~A~~~~~~~~~ 441 (507)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.9e-05 Score=54.78 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA-AIWGSLLAASNIYGDVELGECALQ 403 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 403 (507)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..++...|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444444444444433111112223333444444444444444444443222211 222233344444555555554444
Q ss_pred H
Q 010575 404 H 404 (507)
Q Consensus 404 ~ 404 (507)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.5e-05 Score=51.89 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 4455 556788888888999999999999999999999864
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.3e-05 Score=52.42 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999999999999999999999987543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0006 Score=56.45 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 352 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.... .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334666777777778888888888887776433322 356667777777788888888888777753 2224555566
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 353 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+...+...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 123677888899988888886 5455555544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00084 Score=60.32 Aligned_cols=134 Identities=15% Similarity=0.201 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367788888888888999999999988543 2233444444433 33357788899999999985 4567788888999
Q ss_pred HHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+...|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 22233 34899999988999999999999999998888843
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0041 Score=54.44 Aligned_cols=180 Identities=11% Similarity=-0.024 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccH----HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSF----PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
...+-.....+...|++++|+..|+.+... -|+...- -.+..++.+.++++.|...+++.++..+......+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 333334455556778888888888888773 3443221 3455667788888888888888888765433333333
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 117 LIQMYAS--CK---------------C---IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI 176 (507)
Q Consensus 117 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (507)
.+.+.+. .+ + ..+|...|+++..+.|+. .-..+|...+..+...=..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S-------------~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS-------------QYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC-------------hhHHHHHHHHHHHHHHHHH
Confidence 3333321 11 1 123444444444444432 1122222222222211111
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVE--NVKPDEIAMLAALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 235 (507)
.--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1123445577777777777777777654 2223344455555666666666666555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.014 Score=53.08 Aligned_cols=268 Identities=11% Similarity=-0.067 Sum_probs=133.1
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A 163 (507)
.+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.++-....| ......-.-.++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344555666777777777776544 344555555566666777766655554444333 222333334444444445555
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 164 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAA-LSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
...++. ...| ....++..++....... +|.-.++..+ ..++...|+.+.|...-....+..
T Consensus 137 ~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld- 199 (486)
T KOG0550|consen 137 EEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD- 199 (486)
T ss_pred HHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-
Confidence 544441 0101 01112222222222111 1222333222 123445566666655555555443
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---------------hHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---------------ITWTTMIAGLALHGLGREALDMFSRMERA- 305 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~- 305 (507)
..+....-.-..++.-.++.+.|...|++...-++ ..|..-..-..+.|++.+|.+.+.+.+..
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 11111111111223344566666666666554222 12333344456778888888888877653
Q ss_pred --CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 306 --RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 306 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
...|+...|.....+..+.|+..+|+.-.+...+ +.+. ...|..-..++...+++++|.+-|++.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555666666667777888888777776663 2222 122222234455567777777777765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0056 Score=55.29 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HH
Q 010575 251 LIDMYAKS-GKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERARVK-----PNEI-TF 314 (507)
Q Consensus 251 l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~ 314 (507)
+...|... |+++.|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444444 555555555554432 11 124455667788888888888888887654221 1221 23
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhh-CCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHhhCC
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRY-GIEPK--IEQYGCMIDLLGR--AGYLQEAEKLLRRMP 374 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 374 (507)
...+-++...||+..|...++...... ++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333445566788888888888876321 22222 2344556666643 345677777777773
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=42.99 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=20.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASA 71 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 71 (507)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.029 Score=51.10 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 329 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 329 (507)
..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344455566666666666666666666666666666666666655543221 1123556666666666666666
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
|..+...+. + ..-+..|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-------D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 665554421 1 2345556666666666554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00097 Score=55.00 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKP--NEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
..|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555566666666666555432221 123455555555555666666666555553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00025 Score=66.20 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=83.9
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHc--CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQAS--ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
-+......++..+....+.+.+..++-+.+.. ....-+.|..++++.|...|..+.+..+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34455666677767777777787777777764 2223345667888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhc
Q 010575 117 LIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKV 157 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~ 157 (507)
|++.+.+.|++..|.++...|..+ ..+..++..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888777655 22445555555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0015 Score=58.89 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 178 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
|......|-..+++++|.+.|.+..+.....+ ...|.....++.+ .+++.|...++ ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~---------------~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE---------------KAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH---------------HHH
Confidence 33456667777778777777766543211000 1122222222222 24444444443 334
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccC
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGREALDMFSRMER----ARVKPN--EITFIAILSACCHVG 325 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 325 (507)
..|...|++..|-+++. .+...|... |++++|++.|++..+ .| .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 55666777766655543 345556666 777777777777654 22 111 134555666677777
Q ss_pred cHHHHHHHHHHhHHhhCCCC-----Ch-hHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 326 LVELGRRYFNIMKSRYGIEP-----KI-EQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
++++|.++|+++... .... +. ..+...+-++...|++..|...+++.
T Consensus 170 ~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777653 1111 11 12223333455566777777766664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0017 Score=51.14 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
.-.+...+...|++++|.++|+.+.. .+..-|-.|..++-..|++.+|+..|.......+ -|+..+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 34556667778888888888887664 3456777788888888888888888888877642 3667777788888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCC
Q 010575 325 GLVELGRRYFNIMKSRYGIEP 345 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~ 345 (507)
|+.+.|.+.|+......+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 888888888888876544333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00031 Score=51.13 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCcccHHHHHHHHHccC--------CcHHHHHHHHHHHHcCCCCcHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASAL-RPDNYSFPFVLKAVVKLS--------TIELGREIHCQTVGTGLDSDVHVV 114 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 114 (507)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999887543 244678899999999999999999
Q ss_pred HHHHHHHHh
Q 010575 115 AALIQMYAS 123 (507)
Q Consensus 115 ~~l~~~~~~ 123 (507)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00045 Score=62.11 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH---HhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------C-CCCCH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMK---SRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEANA 379 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~ 379 (507)
..|..|...|.-.|+++.|+...+.=. +.+|-.. ....+..+.+++.-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777788888887665422 2233222 2456677888888888888888888764 1 12245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+..+|..+|.-..++++|+.++.+=+.+. -....++..|+.+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888888888888888887754322 2235678888888888888888888776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.3e-05 Score=44.33 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.3
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.8e-05 Score=41.87 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.2e-05 Score=51.24 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=24.6
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555542 1224444445555555555555555555555
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00075 Score=51.22 Aligned_cols=86 Identities=19% Similarity=0.069 Sum_probs=48.5
Q ss_pred HHHHhhcCCHHHHHHHHhhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH---NSGNYAILSNIYAI 425 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 425 (507)
..++-..|+.++|+.+|++. +... ....+..+..++...|++++|..++++.+...|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 33444555555665555554 1111 1224445555666666666666666666665565 44555555666666
Q ss_pred cCCchHHHHHHHHH
Q 010575 426 LGRWNESGKIRKVM 439 (507)
Q Consensus 426 ~g~~~~A~~~~~~~ 439 (507)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 67777766665443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.047 Score=50.44 Aligned_cols=378 Identities=13% Similarity=0.070 Sum_probs=188.9
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCC-CCcccHHHHHHHH--HcCCCchHHHHHHHHHHHc--CCCC------------
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSK-PDVYLYNTTIKAL--CQTDNPLNAVILYNKIQAS--ALRP------------ 74 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~~p------------ 74 (507)
..+.++++|-. .+.+.....+....+ -....|-.+..++ -+.+.+..|++.+...... +..|
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 34566666654 345555554444433 1134466666543 4778899999888877664 3322
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCCh-hhHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGL----DSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNV-AVWN 148 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~-~~~~ 148 (507)
|..-=+..+..+...|++.+++.+++++...=+ ..+..+|+.++-.+.++= |-++.+. .-|. .-|.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyY 198 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYY 198 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHH
Confidence 111123456677899999999998888876533 478888888766665431 1111111 0010 1122
Q ss_pred HHHHHHHhc-CC---------------------------------HHHHHHHHHhcC-CCCh-hHHHHHHHHHHhCCChh
Q 010575 149 TMVAGYAKV-GD---------------------------------LNNARALFELMT-EKNV-ISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 149 ~li~~~~~~-~~---------------------------------~~~A~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~ 192 (507)
-++-.|.+. .. +-.+++.++.-- .|+- -....+...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 222222221 00 111111111110 1211 112223333333 455
Q ss_pred HHHHHHHHHhHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHh----
Q 010575 193 EAITLFRRMQVENVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN-------NALIDMYAK---- 257 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~---- 257 (507)
++..+.+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+..+- ..+-+..+.
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~ 354 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDES 354 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHH
Confidence 5555555444332111 23467777777888888888877777665443 222111 122222221
Q ss_pred cCCHHHHHHHHHhcCCCChh-----HHHH-HHHHHHHcCC-hHHHHHHHHHHHHCCCCC-CHHHHH----HHHHHHhc--
Q 010575 258 SGKIGKALQVFENMKNKSVI-----TWTT-MIAGLALHGL-GREALDMFSRMERARVKP-NEITFI----AILSACCH-- 323 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~-----~~~~-l~~~~~~~~~-~~~A~~~~~~m~~~g~~p-~~~~~~----~l~~~~~~-- 323 (507)
.-+..+=..++..+...|+. .|-. -..-+.+.|. -++|+++++...+- .| |...-+ .+=.+|.+
T Consensus 355 ~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaL 432 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH
Confidence 11233334455555444432 1211 1223445554 67778887777663 22 222211 11122322
Q ss_pred -cCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH--HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCH
Q 010575 324 -VGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDL--LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 324 -~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 395 (507)
...+.+-..+-+-+.+. |++|- ...-|.|.++ +..+|++.++.-.-.-. .+.|++.+|..+.-......++
T Consensus 433 s~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhH
Confidence 23344444444434333 76663 2334444443 44677887776554444 5567777888777777777788
Q ss_pred HHHHHHHHHH
Q 010575 396 ELGECALQHL 405 (507)
Q Consensus 396 ~~A~~~~~~~ 405 (507)
++|..++..+
T Consensus 512 ~eA~~~l~~L 521 (549)
T PF07079_consen 512 QEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhC
Confidence 8887777665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0024 Score=62.32 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHH
Q 010575 305 ARVKPNEITFIAILSACCH--V---GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRA--------GYLQEAEKLL 370 (507)
Q Consensus 305 ~g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 370 (507)
.+.+.+...|...+++... . ++...|..+|+++.+. .|+ ...|..+..++... ++...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456677888888887442 2 3477899999999853 665 34444444333221 2344555555
Q ss_pred hhC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 371 RRM---P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 371 ~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++. + ...++..|..+.......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++....+.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 553 1 3335677888877777889999999999999999995 78999999999999999999999999864443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=49.42 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG-DVELGECALQHLIKLEP 410 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 410 (507)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888776 3344 4557788888888888 68999999999888887
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00088 Score=60.18 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAA 388 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 388 (507)
.+|..++...-+.+..+.|..+|.++.+. -..+..+|...... |...++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 23345556555555 33356777799999988 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988766633 5888999888999999999999988864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00076 Score=63.05 Aligned_cols=116 Identities=8% Similarity=-0.007 Sum_probs=71.6
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhH
Q 010575 72 LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTG--LDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVW 147 (507)
Q Consensus 72 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 147 (507)
.+.+......+++.+....+.+.+..++-...... ...-..|..++++.|.+.|..+.++.++..=... .||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 33455556666666666666777777666665541 2222345567777777777777777777665544 4577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHh
Q 010575 148 NTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQ 187 (507)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 187 (507)
+.|++.+.+.|++..|.++...|.. .+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777777766653 233444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.079 Score=50.90 Aligned_cols=393 Identities=14% Similarity=0.097 Sum_probs=230.2
Q ss_pred HHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcC
Q 010575 30 YSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTG 106 (507)
Q Consensus 30 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 106 (507)
.+.|+.... -+...|+.+|.---.....+.+..++..++.. -|...- |......=.+.|..+.+.++|++-+..
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a- 108 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA- 108 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 344554443 35566777776655555566677777777652 354443 333334446777888888888887764
Q ss_pred CCCcHHHHHHHHHHHHh-cCChHHHHHHHHhcccC-C---CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 010575 107 LDSDVHVVAALIQMYAS-CKCIYDARKVFDELSLR-V---WNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL 181 (507)
Q Consensus 107 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~---p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 181 (507)
++.+...|......+.. .|+.+.....|+..... + .+...|...|..-...+++.....+++++.+-....|+..
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 55666677666554443 47777777777776654 2 2566777888777788888888888888776333333322
Q ss_pred HHHHH---hC------CChhHHHHHHHHHh--------------------HCCCCCCHHHH--HHHHHHH-------hcc
Q 010575 182 IAGYA---QM------DQPNEAITLFRRMQ--------------------VENVKPDEIAM--LAALSAC-------AQL 223 (507)
Q Consensus 182 i~~~~---~~------~~~~~a~~~~~~m~--------------------~~~~~~~~~~~--~~ll~~~-------~~~ 223 (507)
-..|. +. ...+++.++-.... ..+.+.+..+. +.+-..+ -..
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 22221 11 11222222211111 11111111111 1111111 111
Q ss_pred CCHHHHHHHHHHHHHcC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChH
Q 010575 224 GAVELGEWIHNYIEQYG-------LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGR 293 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 293 (507)
-........++.-.+.- .+++..+|+..+..-...|+.+.+.-+|+...-|-. ..|-..+.-....|+.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 11112222222222211 123456788888888899999999999998876533 45666666666669988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHH---HH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAE---KL 369 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~ 369 (507)
-|..++....+--.+-.+.+-..-..-+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. .+
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 88888877665433322222211122234568999999999999985 3 543 33333455566888888888 45
Q ss_pred HhhC-CCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 370 LRRM-PFEANAAIWGSLLA-----ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 370 ~~~~-~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+... +.+-+..+...+.. .+.-.++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4444 22333333333332 24557899999999999999999999999999988877763
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0086 Score=57.37 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH---------
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-FEANAA--------- 380 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~--------- 380 (507)
..+...+...+.+...+..|.++|.++-.. .++++.....+++++|..+-++.| ..|+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 345555555556667778888888877532 346777888899999999988884 333331
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 381 --IWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 381 --~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
-+...-.+|.+.|+..+|.++++++
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1122223555666666666666665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.1 Score=51.43 Aligned_cols=356 Identities=11% Similarity=0.074 Sum_probs=191.1
Q ss_pred HHcCCCchHHHHHHHHHH--------HcCCCCCcccHH-----HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 51 LCQTDNPLNAVILYNKIQ--------ASALRPDNYSFP-----FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
+.+..++++-..+....+ +-|++.+..-|. .++.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344455555554444432 235555544444 3455566677777777776665322111 14666677
Q ss_pred HHHHHhcCC---hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHH
Q 010575 118 IQMYASCKC---IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK--------NVISWTTLIAGYA 186 (507)
Q Consensus 118 ~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~ 186 (507)
..-+.+..+ -+-+..+-+++........+|..+.......|+.+-|..+++.=+.. +..-+..-+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 776666532 22233333333332125566777777777888888888877654321 1122333444455
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
..|+.+-...++-.+... .+...|...+ .+...|..+|.+..+..-. ..+-+.|-. ++...+..
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a 621 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQ-DDNHQALA 621 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhc-ccchhhhh
Confidence 556666555555554432 1111111111 1223344444444332100 011112222 22222222
Q ss_pred HHH--hc-----CCCChhHHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHH
Q 010575 267 VFE--NM-----KNKSVITWTTMIAGLALHGLG---RE-------ALDMFSRMER-ARVKPNEITFIAILSACCHVGLVE 328 (507)
Q Consensus 267 ~~~--~~-----~~~~~~~~~~l~~~~~~~~~~---~~-------A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~ 328 (507)
.|. .. .+.-..........+.+.... ++ -+.+.+.+.. .|..-...+.+--+..+...|+-.
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 10 011111222233334333321 11 1222222221 232333445566666677789999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+|.++-.+.+ .||...|..-+.++...+++++-+++-+..+ .+.-|.-+..+|.+.|+.++|..++-+.-.
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~- 772 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG- 772 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC-
Confidence 9988876664 5788888888999999999999888877763 256688889999999999999888776522
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+...+.+|.+.|++.+|.+.--+-
T Consensus 773 -------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 773 -------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 226778999999999998876444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00068 Score=61.31 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++..+..+|.+.+++..|++..+++++.+|+|..++..-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346677788888888999999999999999999999999999999999999999999988873
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.06 Score=48.75 Aligned_cols=273 Identities=16% Similarity=0.158 Sum_probs=171.5
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHH--HHHHhCCChhHHHHHHHHHhHCCCCCCHH--HHHHHHHHHhccCCHHHH
Q 010575 157 VGDLNNARALFELMT---EKNVISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEI--AMLAALSACAQLGAVELG 229 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~---~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 229 (507)
.|+-..|.++-.+.. ..|....-.++ ++-.-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344444544443332 23333333333 2344568888888888888652 2211 122222233566777888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChh--HHHHHHHHHH---HcCChHHHHHHH
Q 010575 230 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVI--TWTTMIAGLA---LHGLGREALDMF 299 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~A~~~~ 299 (507)
..+-+..-..- +.-.......+...|..|+|+.|+++.+.-.. ++.. .--.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77777665543 33356667788888888999999888876543 3332 1122222211 123455666555
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C
Q 010575 300 SRMERARVKPNEIT-FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P 374 (507)
Q Consensus 300 ~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 374 (507)
.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+. +..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 55544 4666533 334456788999999999999999854 67766554333 3455543 22222222 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHhCC
Q 010575 375 FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRDMG 443 (507)
Q Consensus 375 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 443 (507)
.+| +..+...+..+-...|++..|..--+.+....|. ..+|..|+++-... |+-.++..++.+.....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 344 5556777788888999999999999999999998 77899999988766 99999999998876443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=64.24 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+...|+.+..+|...|++++|+..|+++++++|++..+ |.+++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677777778888888888888888888888887643 778888888888888888888777653
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0021 Score=46.96 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchhH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAALSACAQLG--------AVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999999 899999999999887653 33456788899999999999999
Q ss_pred HHHHHHHHHh
Q 010575 248 NNALIDMYAK 257 (507)
Q Consensus 248 ~~~l~~~~~~ 257 (507)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00014 Score=44.25 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+|..+..+|...|++++|+++++++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999888864
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.068 Score=48.76 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 010575 211 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 290 (507)
Q Consensus 211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (507)
.+.+..+.-+...|+...|.++-.+.. -|+...|-..+.+|+..++|++-.++... +++++.|..++..|...|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence 345555666777888888777765543 57888888999999999999988887654 567788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+..+|..+..+ ++ + ..-+..|.+.|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHH
Confidence 99999888776 22 2 34566777888888887653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00075 Score=59.46 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+.-+..+|...|++++|...|+.+++..|++ +.++..++.++...|++++|.++++++.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555555444443 2233334445555555555555555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.015 Score=46.82 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH
Q 010575 109 SDVHVVAALIQMYASCKCIYDARKVFDELSLRVW--NVAVWNTMVAGYAKVGDLNNARALFELMTE-----KNVISWTTL 181 (507)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l 181 (507)
|+..-...|..++.+.|++.+|...|++...-.. |......+.++....++...|...++.+.+ .++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444455555555555555555555443211 444444444555555555555555555443 123344455
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
.+.+...|.+.+|...|+..... -|+..........+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66666677777777777766653 344433333334445566555554444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.075 Score=49.07 Aligned_cols=372 Identities=10% Similarity=0.093 Sum_probs=211.0
Q ss_pred HHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCC
Q 010575 30 YSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGL 107 (507)
Q Consensus 30 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 107 (507)
+++=+.+.. .|+.+|-.||..+...+..++..+++++|.. ..+--+..|..-+.+-...+++..+..+|.+.+....
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 355555554 4788999999999999999999999999986 1222345577677766677899999999999988755
Q ss_pred CCcHHHHHHHHHHHHhcC-----C----hHHHHHHHHhcccCCC-ChhhHHHHHHHHHh---cC------CHHHHHHHHH
Q 010575 108 DSDVHVVAALIQMYASCK-----C----IYDARKVFDELSLRVW-NVAVWNTMVAGYAK---VG------DLNNARALFE 168 (507)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g-----~----~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~---~~------~~~~A~~~~~ 168 (507)
. ...|...+.--.+.+ + +-+|-++.-....-.| +...|+..+..+-. .| +++...+.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 555555555333322 1 1222222222111122 23333333222111 11 1122222222
Q ss_pred hcCC-------------------------------------------------------CC---hhH-----------HH
Q 010575 169 LMTE-------------------------------------------------------KN---VIS-----------WT 179 (507)
Q Consensus 169 ~~~~-------------------------------------------------------~~---~~~-----------~~ 179 (507)
++.. .| ..+ |-
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 2221 00 001 11
Q ss_pred HHHHHHHhCC-----C-h-hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 180 TLIAGYAQMD-----Q-P-NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 180 ~li~~~~~~~-----~-~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
..|.--...| + . .+.--++++.... +.-....|----.-+...++-+.|.+.... |++..+....-+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHH
Confidence 1221111111 0 0 1112223333221 122222332222333445555555554432 3222222222344
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---------------------------------CChhHHHHHHHHHHHcCChHHHHHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKN---------------------------------KSVITWTTMIAGLALHGLGREALDMF 299 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (507)
..|.-..+.+.....|+...+ .=..+|...+..-.+..-.+.|..+|
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444433221 11245677777777888889999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCC
Q 010575 300 SRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFE 376 (507)
Q Consensus 300 ~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 376 (507)
-+..+.| +.++...++.++..++ .|++.-|..+|+.=... .+.++..-+..+.-+.+.++-+.|..+|+.. .+.
T Consensus 421 ~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 421 IKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 9999888 5677788888887666 58888999999877653 2333333455677778889999999999965 222
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 377 A--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 377 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
. -..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 2 25688888888888999999998888888888873
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.017 Score=50.58 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh-h---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN--KSV-I---TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH- 323 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~- 323 (507)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445556667777766666654 211 1 1233456667777777777777777664222112222222222221
Q ss_pred -c---------------Cc---HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 010575 324 -V---------------GL---VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 384 (507)
Q Consensus 324 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 384 (507)
. .| ...|+..|+.+++++ |+. .-..+|...+..+.... ..--..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 223445555555432 332 11223332222221000 001113
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..-|.+.|.+.-|..-++.+++.-|+.+ .++..++.+|.+.|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45568889999999999999998877744 466788899999999999999887664
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.11 Score=50.66 Aligned_cols=248 Identities=10% Similarity=0.036 Sum_probs=121.4
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCC--------CcccHHHHHHHHHccCCcHHH
Q 010575 25 FSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-ALRP--------DNYSFPFVLKAVVKLSTIELG 95 (507)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~l~~~~~~~~~~~~a 95 (507)
.+++|.++.+.- |.+..|..+.......-.++.|...|-+.... |++. +...-..=+. +--|++++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 356666666543 44456777777666666666666666655442 2211 0000011111 224567777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 96 REIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW---NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
++++-++-+.+ ..+..+.+.|++-...++++.=....- -...|+.+...+.....|++|.+.|.....
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77765553332 234556666676666666654222211 234566677777777777777776665432
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
. ...+.++.+..++++-..+-..+ +-+......+...+.+.|.-++|.+.+-+. + .| ..-+
T Consensus 825 ~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv 885 (1189)
T KOG2041|consen 825 T-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAV 885 (1189)
T ss_pred h-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHH
Confidence 1 22444455544444444333322 223334444555555555555554443221 1 11 1233
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHH--------------HHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITW--------------TTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..+...++|.+|.++-+...-|.+.+. .--|..+.+.|++-.|-+++.+|.+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 444555555555555544333222111 0123334556666666666666643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.034 Score=47.42 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchhHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG-----LNTIVPLNNA 250 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 250 (507)
...+.++..+...|.+.-....+++..+...+.++.....+.+.-.+.|+.+.|...++...+.. .+....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456777777888888888888888887666677777788888888899999999888776543 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 313 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 313 (507)
....|...+++..|...|.++.. .++..-|.-.-+..-.|+...|++.++.|.+. .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 55567778888888888888775 34556666666666678889999999998875 444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0086 Score=45.50 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=60.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchhHHHHHHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLN--TIVPLNNALIDMY 255 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 255 (507)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888877775543 234455566677777777777777766654211 0122222233445
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSVITWTTMIAG 285 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 285 (507)
...|+.++|...+-....++...|..-|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666554443333333333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00061 Score=47.03 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=51.0
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
..|.+.+++++|.++++++ ...| ++..|......+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888888888888887 4444 555677788888999999999999999999999876554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0045 Score=54.60 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSL 385 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l 385 (507)
..|...+....+.|++++|+..|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+ |..| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444566888888888888887532111 1346667888888888888888888877 2222 34456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+..+...|+.++|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77788899999999999999999998653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.018 Score=49.00 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--------CCCCCHHHHHHHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEANAAIWGSLLAA 388 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~l~~~ 388 (507)
++..+.-.|.+.-....+.++++. .-+.++.....|++.-.+.|+.+.|...|++. +.+.+..........
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 333334444444444444444442 22333444444444444555555555555433 111111222222223
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+.-.+++..|...+.+++..+|.++..-+.-+-++.-.|+..+|++.++.|.+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555565666666666665555555555555555666666666666543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.041 Score=50.65 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
.++-.|....+++...++.+.+... ....-....-++-+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777776653 11122233444555 6788888888888655555677777777776
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---hhC-------CCC
Q 010575 320 ACCH---------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ----EAEKLL---RRM-------PFE 376 (507)
Q Consensus 320 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~~ 376 (507)
.|-. ....++|+..|.+.- .+.|+..+--.++..+...|... +..++- ... ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5531 223666777666554 33454433223333333333311 222222 111 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.+-..+.+++.++.-.|+.++|.+.++++++..|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34445567888888899999999999999888776
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0044 Score=56.05 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH----HcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCh--hH
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIE----QYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSV--IT 278 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~--~~ 278 (507)
|..+-+.|.-.|+++.|+..++.-. +.|-. .....+..|.+++.-.|+++.|.+.|+... .+.+ .+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444445566777665554322 12211 223445556667777777777777665432 1222 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMER----A-RVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.-.|...|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|+.+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44566666666677777776655221 1 112234566677777777777777766655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00057 Score=47.91 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKL----EPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+++.+...|...|++++|+..+++++++ ++++ ..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888888643 2222 4577889999999999999999998865
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0068 Score=50.29 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHHHhc--CCCChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc--------------
Q 010575 165 ALFELM--TEKNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-------------- 223 (507)
Q Consensus 165 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------- 223 (507)
..|+.. ..++-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 34566677777766654 466677777778888888888888888888876542
Q ss_pred --CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010575 224 --GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 224 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (507)
.+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678888888888888988888888888866543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.019 Score=44.52 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN---YAILSNIYAI 425 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 425 (507)
.....+.|++++|.+.|+.+ |..| ....-..++.+|.+.|+++.|...+++.++++|.++.+ +...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677888888877776 3333 34456667888889999999999999999998887653 3333434444
Q ss_pred cCC---------------chHHHHHHHHHH
Q 010575 426 LGR---------------WNESGKIRKVMR 440 (507)
Q Consensus 426 ~g~---------------~~~A~~~~~~~~ 440 (507)
... ..+|..-|+.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 433 556666666665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=53.87 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
..++..+.-+|.+.+++.+|+...++. . .++|......=..+|...|+++.|+..|++++++.|+|..+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345677888899999999999998887 3 34577777778889999999999999999999999999999999988877
Q ss_pred HcCCchHH-HHHHHHHH
Q 010575 425 ILGRWNES-GKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A-~~~~~~~~ 440 (507)
+.....+. .++|..|-
T Consensus 337 k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77666554 77888885
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.017 Score=49.26 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=28.7
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCC----cccHHHHHHHHHccCCcHHHHHHHHHHHHcCC
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPD----NYSFPFVLKAVVKLSTIELGREIHCQTVGTGL 107 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 107 (507)
..+...|++.+|...|+.+...- |+ ....-.++.++.+.|+++.|...++..++.-+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34455566666666666665531 21 12233445555566666666666666655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.25 Score=44.91 Aligned_cols=275 Identities=16% Similarity=0.114 Sum_probs=125.2
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhcCChHHHHHHHHhcccCCCChhh----HHHHHHHHHhcCCHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQ--MYASCKCIYDARKVFDELSLRVWNVAV----WNTMVAGYAKVGDLN 161 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~ 161 (507)
..|+-..|.++-.+..+. +..|....-.|+. +-.-.|+++.|.+-|+.|... ..+ ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 344555555554443322 2223332222332 223346666666666666552 222 222222233455666
Q ss_pred HHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC-CCCCHH--HHHHHHHHHh--c-cCCHHHHHHH
Q 010575 162 NARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEI--AMLAALSACA--Q-LGAVELGEWI 232 (507)
Q Consensus 162 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~--~-~~~~~~a~~~ 232 (507)
.|...-+..-. | -...+..++...+..|+|+.|+++.+.-+... +.++.. .-..|+.+-. . ..+...|...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 55555554432 1 22455566666666666666666666544332 223321 1122222211 1 1233444444
Q ss_pred HHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC
Q 010575 233 HNYIEQYGLNTIVPL-NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPN 310 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~ 310 (507)
-.+..+. .|+..- --.-..++.+.|+..++-.+++.+-+..+..--..+-.+.+.| +.++.-+++..+ ..++||
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~g--dta~dRlkRa~~L~slk~n 327 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSG--DTALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCcc
Confidence 3333332 233211 1123455666667766666666665422221111222223333 333333333322 113343
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHHHHHHHHhhC
Q 010575 311 E-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR-AGYLQEAEKLLRRM 373 (507)
Q Consensus 311 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 373 (507)
. .+...+..+....|++..|..--+... ...|....|..|.+.-.. .|+-.++..++-+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3 444455566666677766666555554 345666666666555433 36666776666655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.18 Score=42.89 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 366 (507)
+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666777777766666664321111 13334455556666655533
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=46.04 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEAN-AAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555556655555555544 1 1122 345667777777788888888887777543
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.014 Score=48.52 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=66.3
Q ss_pred HHHHhc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 010575 266 QVFENM--KNKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV-------------- 324 (507)
Q Consensus 266 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------- 324 (507)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 34566777777777664 467777778888899999999999999999887642
Q ss_pred --CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 010575 325 --GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 361 (507)
Q Consensus 325 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (507)
.+.+-|++++++|... |+.||..++..+++.+++.+
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 2234566777777654 77777777777777765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.084 Score=46.34 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHhhC-CCCC-CHHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA-NAAIW 382 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~ 382 (507)
+-|...|..|..+|...|+.+.|...|....+ -.++++..+..+..++..+. ...++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34678888888888888888888888888875 33445666666666655432 356788888887 4455 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6666788889999999999999988887744
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0063 Score=48.79 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677778899999999999999999999999999999999999999999999999885
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.64 Score=45.69 Aligned_cols=333 Identities=14% Similarity=0.110 Sum_probs=196.4
Q ss_pred CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHc-CCCC--------cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 010575 73 RPDNYSFPFVLKAVVKLSTIELGREIHCQTVGT-GLDS--------DVHVVAALIQMYASCKCIYDARKVFDELSLRVWN 143 (507)
Q Consensus 73 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 143 (507)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+-+.+ --|++++|.++|-++..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 478888988888777777777777766544321 2211 11111111222 258999999999988776
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 010575 144 VAVWNTMVAGYAKVGDLNNARALFELMTEK--N---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 218 (507)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 218 (507)
...|..+.+.|++-...++++.-... | ..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 34577788889999999988875432 1 357899999999999999999988765321 23455
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
++.+..++++-+.+... .+.+....-.+.+++...|.-++|.+.|-+...|.. .+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHH
Confidence 56666565555444332 355566677888999999999999998887776643 34455666667777666
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCChh----HHHHH-HHHH--
Q 010575 299 FSRMERARV-----------KPNEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIE----QYGCM-IDLL-- 357 (507)
Q Consensus 299 ~~~m~~~g~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~----~~~~l-~~~~-- 357 (507)
-++..-..+ -.+..+ .--|..+.+.|..-.|.+++.+|-++- +.++-.. +..++ +.-+
T Consensus 901 aq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~ 979 (1189)
T KOG2041|consen 901 AQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQ 979 (1189)
T ss_pred HHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 544221000 001111 123456677787777777777765431 3333211 11111 1111
Q ss_pred --------hhcCCHHHHHHHHhhCC----------CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHh---ccCCCCCc
Q 010575 358 --------GRAGYLQEAEKLLRRMP----------FEANAAIWGSLLAA--SNIYGDVELGECALQHLI---KLEPHNSG 414 (507)
Q Consensus 358 --------~~~g~~~~A~~~~~~~~----------~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~---~~~p~~~~ 414 (507)
-+.|..++|..+++..- .-.....|..++-+ ....|..+.|.+.--.+. +.-|+ ..
T Consensus 980 ~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~e 1058 (1189)
T KOG2041|consen 980 TIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AE 1058 (1189)
T ss_pred HHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HH
Confidence 13577788887666541 11123445555544 456688888776654442 23344 45
Q ss_pred hHHHHHHHHHHcCCchHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~ 435 (507)
+|..|+-+-+....+-..-+.
T Consensus 1059 iySllALaaca~raFGtCSKA 1079 (1189)
T KOG2041|consen 1059 IYSLLALAACAVRAFGTCSKA 1079 (1189)
T ss_pred HHHHHHHHHhhhhhhhhhHHH
Confidence 666665555444444333333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.031 Score=43.00 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 305 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 305 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
....|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.=.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34668888888888888888888888888888888888777778887777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=54.97 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566667777777777777777777765 555553 24677777777777777777777777765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=49.83 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=97.2
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHhcCC-
Q 010575 99 HCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNT-----MVAGYAKVGDLNNARALFELMTE- 172 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~- 172 (507)
++++.+.|-.|+... +...++-.|++.+|-++|.+--....-...|+. ...-+...|+.++-..+.++--+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 455566666566543 344555667777777777665443111111211 11222223333322222221110
Q ss_pred -CChhHHHHHHHHHHhCCChhHHHHHHHH------HhHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 173 -KNVISWTTLIAGYAQMDQPNEAITLFRR------MQVENV---KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 173 -~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
.++.--..-...+...|+.++|..+.-+ +.+-+- ..+..+...+..-+.+...+..|-++|..|-+.
T Consensus 700 Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--- 776 (1081)
T KOG1538|consen 700 ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--- 776 (1081)
T ss_pred hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---
Confidence 0110011233444556666666554321 111111 123344444444555666677777777766543
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVI-----------TWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
..+++.....++|++|.++-+..++ +++. -|...-.+|.+.|+-.+|..+++++...
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3567777788888888888877765 2321 1222334566677777777777776543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.048 Score=51.08 Aligned_cols=118 Identities=9% Similarity=0.113 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 292 GREALDMFSRMER-ARVKPNE-ITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 292 ~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.++-++..+ --+.|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4456666666662 1234433 4455444443321 223334444444443 1123444444455545555
Q ss_pred CCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 361 GYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
|+++.|..+|+++ ...||. .+|......+.-.|+.++|.+.++++++++|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 5566666666655 344432 34444444555566666666666666666665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=49.84 Aligned_cols=158 Identities=10% Similarity=0.018 Sum_probs=83.3
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNAR 164 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 164 (507)
...-.++++.+.++.+.-.-. +..+..-.+.++..+.+.|..+.|+++...-. .-.....+.|+++.|.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------HHHHHHHHCT-HHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------HHhHHHHhcCCHHHHH
Confidence 334556666655554311101 01123446667777777777777777654322 2345566677777777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 010575 165 ALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 244 (507)
Q Consensus 165 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 244 (507)
++.+... +...|..|.....+.|+++-|.+.|++..+ +..++-.|...|+.+...++.+.....|-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 7665554 555777777777777777777777766543 33444455666666666666666555541
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334444455666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.89 Score=44.35 Aligned_cols=158 Identities=17% Similarity=0.064 Sum_probs=95.0
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHh----cCChHHHHHHHHhcccCCCChhhHHH
Q 010575 80 PFVLKAVVKLSTIELGREIHCQTVGTGLDSDV------HVVAALIQMYAS----CKCIYDARKVFDELSLRVWNVAVWNT 149 (507)
Q Consensus 80 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 149 (507)
..++....=.||-+.+++.+....+.+--..+ -.|+..+..++. ....+.|.++++.+..+.|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34555555567778888777776553311111 223333333332 34567788888888888887666655
Q ss_pred H-HHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHH-H
Q 010575 150 M-VAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-C 220 (507)
Q Consensus 150 l-i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~ 220 (507)
. .+.+...|++++|++.|+..... ....+--+.-.+.-..+|++|.+.|..+.+.+ .-+..+|.-+..+ +
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 4 45666678888888888865531 12344456666777788888888888887754 2333444433333 3
Q ss_pred hccCCH-------HHHHHHHHHHHH
Q 010575 221 AQLGAV-------ELGEWIHNYIEQ 238 (507)
Q Consensus 221 ~~~~~~-------~~a~~~~~~~~~ 238 (507)
...|+. ++|..++.++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 445555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.1 Score=45.46 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC
Q 010575 151 VAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 204 (507)
Q Consensus 151 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 204 (507)
+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+=..
T Consensus 106 l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 34444555666555522221 223333344455556666665555555554333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.77 Score=43.09 Aligned_cols=150 Identities=13% Similarity=-0.019 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-hCCCCChhHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRRYFNIMKSR-YGIEPKIEQY 350 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 350 (507)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+..+-..|+..+|+..++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44577778888888888888888888877643211 2233333445556678888888888777762 1111111111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 351 GCMIDLLGRAGYLQEAEKL-LRRMPFEANAAIWGSLLAASNIY------GDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
..+...+.. ..+..... ........-...+..+..-+... +..+.+...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7889999999999999999888888888776
Q ss_pred HHc
Q 010575 424 AIL 426 (507)
Q Consensus 424 ~~~ 426 (507)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.22 Score=48.53 Aligned_cols=115 Identities=18% Similarity=0.112 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHH-HHHHHhhcCCHHHHHHHHhhCC-C-----CCCHHHHHHHHHHHHHcCCHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRMP-F-----EANAAIWGSLLAASNIYGDVE 396 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~~~ 396 (507)
..+.+.|.++++.+.++ -|+...|.. -.+.+...|++++|++.|+++- . +.....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45678888888888865 355555443 3455667888999999888651 1 113344555667788889999
Q ss_pred HHHHHHHHHhccCCCCCchHH-HHHHHHHHcCCc-------hHHHHHHHHHHh
Q 010575 397 LGECALQHLIKLEPHNSGNYA-ILSNIYAILGRW-------NESGKIRKVMRD 441 (507)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 441 (507)
+|...+.++.+.+.-+..+|. ..+-++...|+. ++|.+++++++.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999887766555555 345566677888 888888888863
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.93 Score=43.93 Aligned_cols=341 Identities=12% Similarity=0.009 Sum_probs=180.7
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
+...|..++.---...+.+.+..++..++..- +.--..|......=.+.|..+.+.++|++-....| +...|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44455556654444445566677777776542 22333455566666778999999999999887766 67777777655
Q ss_pred HHh-cCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----
Q 010575 154 YAK-VGDLNNARALFELMTE------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ---- 222 (507)
Q Consensus 154 ~~~-~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 222 (507)
++. .|+.+...+.|+.... .....|...|.--...+++.....+|++.++....--...|.........
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 444 6777788888887764 34567788888778888999999999998874211111122211111111
Q ss_pred -cCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHH-------HHHHHHcC
Q 010575 223 -LGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTM-------IAGLALHG 290 (507)
Q Consensus 223 -~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l-------~~~~~~~~ 290 (507)
....+++.++-...... ..+. .+ ...+.-....+....+.. ...+.+ -..+-...
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~------------~~-~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITH------------SQ-EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhccc------------cc-ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 12233333322222211 0000 00 011111111111111110 001111 11122222
Q ss_pred ChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 010575 291 LGREALDMFSRMERA---RVKP----NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 363 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (507)
...+....|+.-++. .++| +..+|...+.--...|+.+.+.-+|++..- .+..-...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 233333333333322 1222 335666666666677777777777777654 2222344555555555555777
Q ss_pred HHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 364 QEAEKLLRRM-----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 364 ~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
+-|..++.+. +..|......+ ..+...|++..|..+++.+.+--|+...+-..-+....+.|+.+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a--~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEA--RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHH--HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 7777666655 22232222222 22445677888888887776544775555555566666777777766
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.18 Score=44.23 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=82.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS---LLAASNIYGDVE 396 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 396 (507)
.....|++..|..+|+..... .+-+...-..++.+|...|+.+.|..++..+|.+-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888888763 233455666788888899999999999998864444433333 122333333333
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 397 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
+. .-+++-...+|+|...-..++..+...|+.++|.+.+-.+..++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 22334456789889999999999999999999998877765443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.022 Score=46.40 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHhhcCCHHHHHHHHhhC--CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 355 DLLGRAGYLQEAEKLLRRM--PFEA-----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~--~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+-+.+.|++++|..-|..+ .+++ ....|..=..++.+.+..+.|+.-..++++++|.+..++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456778888888777765 1112 23345555567789999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010575 428 RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 428 ~~~~A~~~~~~~~~~~~ 444 (507)
++++|++=++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999975544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.21 Score=46.99 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=57.3
Q ss_pred CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 362 YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 362 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...+|.++.+++ ...| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666555 3333 66666666666677777888888888888888888888888888888888888888888775
Q ss_pred H
Q 010575 440 R 440 (507)
Q Consensus 440 ~ 440 (507)
.
T Consensus 399 l 399 (458)
T PRK11906 399 L 399 (458)
T ss_pred h
Confidence 4
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.55 Score=40.69 Aligned_cols=194 Identities=19% Similarity=0.143 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS- 319 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~- 319 (507)
..+......+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444445555555555555555544331 2223444445555555556666666666555322221 11111222
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHHcCC
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN--AAIWGSLLAASNIYGD 394 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~ 394 (507)
.+...|+++.+...+.+.... .. ......+......+...++.++|...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666666321 11 012223333333355566666666666665 22222 4556666666666667
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+.|...+..+....|.....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766666445555555555555666777666666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.14 Score=39.83 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 282 MIAGLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
-.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++.+...|++ -|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445566667777777666665411 1122444556666666677777777666666543333332 23333333332
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 360 AGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
-...+.. +..+ .... ..+....|...|+++++.-|++..
T Consensus 95 ~~~~~~~---~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGS---LQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhH---Hhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 2222111 1111 1111 122356788889999999999653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.14 Score=40.89 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQY 350 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 350 (507)
....++..+...|++++|..+.+.+.... +.+...|..++.++...|+...|.++|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556667778888888888888888753 33667888888888888888888888877643 34777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.059 Score=46.66 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC-CChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLL 386 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 386 (507)
.|+.-+.. .+.|++..|.+.|....+.+.-. -....+..|..++...|++++|..+|..+ |..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 45677888888888887743111 12344555777888888888888777766 3333 345666677
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
....+.|+.++|...|+++++.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77778888888888888888888875543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0081 Score=33.87 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.83 Score=42.34 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---CCChhHHHHHHHHHhHCCCCCCHHHHHH
Q 010575 146 VWNTMVAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQ---MDQPNEAITLFRRMQVENVKPDEIAMLA 215 (507)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 215 (507)
+...++-+|-...+++..+++++.+... ....-....-++-+ .|+.++|++++..++.....++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555577777777777777777653 11122233445555 7788888888888666656677777776
Q ss_pred HHHHH
Q 010575 216 ALSAC 220 (507)
Q Consensus 216 ll~~~ 220 (507)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.19 Score=45.21 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=56.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCH-----H
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANA-----A 380 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-----~ 380 (507)
+..++...+.++++++.|+.+.+--.... ...++-.|...|.+..++++|.-+..++ +...-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555555666655555543111111 1234555555566666655555444333 111111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc--C----CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKL--E----PHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+...+..++...|+...|.+..+++.++ . |-.......++++|...|+.+.|..-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1222334555566666666666655332 1 12223344556666666665555544433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.54 Score=41.37 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 263 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
...+.++....+....-..-.......|++.+|..+|+........ +...-..++.+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 3444444444432222222334566778888888888887765322 3455566788888889999998888877542 1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCCchHHHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAIL 419 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 419 (507)
-.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++.+ -++...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222233444555554444444444443345 66666778888888999999988887776654 3466778888
Q ss_pred HHHHHHcCCchHHHHHH
Q 010575 420 SNIYAILGRWNESGKIR 436 (507)
Q Consensus 420 ~~~~~~~g~~~~A~~~~ 436 (507)
+.++.-.|..+.+..-+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88888888655544333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.4 Score=43.82 Aligned_cols=303 Identities=14% Similarity=0.002 Sum_probs=167.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcC---CHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC
Q 010575 116 ALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVG---DLNNARALFELMTE--KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 189 (507)
.+++-+...+.+..|+++-..+..... ....|......+.+.. +.+-+..+-+++.. ....+|..+.......|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 345566667777777777776655411 2344555555555542 23334444444444 34456777777777778
Q ss_pred ChhHHHHHHHHHhHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010575 190 QPNEAITLFRRMQVENVK----PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 265 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 265 (507)
+.+-|..+++.=...+.. .+-.-+...+.-+...|+.+....++-++.+.- ...+.+....+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---------~~s~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---------NRSSLFMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---------HHHHHHHHHHhchhhh
Confidence 887777766543222100 111123344444555566665555555544321 0111111223344455
Q ss_pred HHHHhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH------HHCCCCCCHHHHHHHHHHHhccCc----------HH
Q 010575 266 QVFENMKNK-SVITWTTMIAGLALHGLGREALDMFSRM------ERARVKPNEITFIAILSACCHVGL----------VE 328 (507)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m------~~~g~~p~~~~~~~l~~~~~~~g~----------~~ 328 (507)
.+|....+. |..+ +..+.+.++..++...|..- ...|..|+.. ....++.+... ..
T Consensus 593 ~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHH
Confidence 555544331 2111 11122223323332222110 0123333332 23334443322 23
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+-+.+.+.+..+++..-.-.+.+--+..+...|+..+|.++-.+.++ ||-..|..-+.++...+++++-+++-+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAksk--- 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSK--- 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhcc---
Confidence 33445555655555544445555666777889999999999999974 78888888888999999988766655443
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+ |-.|.-...+|.+.|+.+||.+++-++.
T Consensus 742 ks--PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 742 KS--PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred CC--CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 22 5568888899999999999999998875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.35 Score=36.75 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=84.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
.-.|..++..++..+...+ .+..-++.+|--....-+-+-..+.++.+-+-+ |. ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHHH
Confidence 4457777788888777653 244555555554445555555666666654432 22 123444444
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 367 EKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
...+-.++ .+....+..+......|+-+.-.+++..+.+.+..+|.++..++.+|.+.|+..++.+++++.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44443332 344556667778888999999999999887665556889999999999999999999999999888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.72 Score=39.94 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch-hHHHHHHH-
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SV-ITWTTMIA- 284 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~l~~- 284 (507)
...+......+...+.+..+...+...... ........+......+...+++..+...+...... +. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555566666666666665555542 22344445555556666666677777777766542 11 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcC
Q 010575 285 GLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAG 361 (507)
Q Consensus 285 ~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 361 (507)
.+...|+++.|...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67888999999999988855221 112334444444466788999999999988863 233 4677788888888899
Q ss_pred CHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 362 YLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 362 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
++++|...+... ...|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998887 44444 445555555666777899999999999998887
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.53 Score=40.58 Aligned_cols=177 Identities=14% Similarity=0.028 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMY 121 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (507)
|+. ...-.+.|++++|.+.|+.+...- -+-...+...++-++.+.++++.|....++..+.-+......|..-|.++
T Consensus 38 Y~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 38 YNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 443 444577899999999999988641 11133445556677789999999999999988876654445566666665
Q ss_pred Hhc-------CChH---HHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH-H-HHHHHHHHhCC
Q 010575 122 ASC-------KCIY---DARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS-W-TTLIAGYAQMD 189 (507)
Q Consensus 122 ~~~-------g~~~---~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~~ 189 (507)
+.. .|.. .|..-|+++..+.||..- ...|..-...+ .|... + -.+.+-|.+.|
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~--~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKL--NDALAGHEMAIARYYLKRG 181 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 532 1111 233333333333442210 00111100000 01111 1 23556788888
Q ss_pred ChhHHHHHHHHHhHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
.+..|..-++.|++. .+-+ ...+..+..+|...|-.++|...-.-+.
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 888888888888876 2222 2344455666777777777766554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.066 Score=47.43 Aligned_cols=158 Identities=12% Similarity=-0.031 Sum_probs=109.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH----HHHHHHhhcCC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG----CMIDLLGRAGY 362 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 362 (507)
.-.|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578888888888888876 455777777777888899999988888888876 3355554333 33445567899
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCCchHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH----NSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+++|++.-++. .+.| |..........+.-.|++.++.+...+-...=.. -..-|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887 5444 4455566666777888999988887765321111 1123445566777788999999999
Q ss_pred HHHHhCCCccC
Q 010575 437 KVMRDMGVKKM 447 (507)
Q Consensus 437 ~~~~~~~~~~~ 447 (507)
+.-.-....++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 77653334433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.19 Score=40.19 Aligned_cols=83 Identities=8% Similarity=-0.083 Sum_probs=32.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
..|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|+..|.....- + .-|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34444444444444433211 12223333444444444444444444443321 1 112222223344444444444444
Q ss_pred HHHhhC
Q 010575 368 KLLRRM 373 (507)
Q Consensus 368 ~~~~~~ 373 (507)
..|...
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.54 Score=44.53 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCH--HHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-F-EANA--AIWGSLLA 387 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~--~~~~~l~~ 387 (507)
.+-..+..++-+.|+.++|++.++++.+.+...........|+.++...+.+.++..++.+.. + -|.. ..|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 334457777778899999999999998753222234567788999999999999999988873 1 2333 34555443
Q ss_pred HHHHcCC---------------HHHHHHHHHHHhccCCCCCc
Q 010575 388 ASNIYGD---------------VELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 388 ~~~~~g~---------------~~~A~~~~~~~~~~~p~~~~ 414 (507)
.....++ ...|.+.+.++++.+|.-+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3333333 23467888999888887553
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.56 Score=37.09 Aligned_cols=86 Identities=6% Similarity=-0.032 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
...++..+...+.+......++.+...+ ..++..++.++..+++.+ .....+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4455556655566666666666665554 244555666666665442 2222222221 1122223334555555
Q ss_pred cCChHHHHHHHHhc
Q 010575 124 CKCIYDARKVFDEL 137 (507)
Q Consensus 124 ~g~~~~A~~~~~~~ 137 (507)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.1 Score=43.24 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=92.5
Q ss_pred HHHHHccCChhHHHHHhccCCCCCcc---cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcH
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPDVY---LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIE 93 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 93 (507)
+..+.+...++-|..+.+.-.-+... .......-+.+.|++++|..-|-+-... +.| ..++.-+.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHH
Confidence 44444555555555555443221111 1222223445667777777766655431 222 23455555555555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010575 94 LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK 173 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 173 (507)
.-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..... .-..-....+..+.+.+-.++|..+-.+...
T Consensus 415 nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 556667777777765 3444466778888888887777777666521 1111133445555555555555555444433
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
...... -.+-..+++++|++.+..+.
T Consensus 492 he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 222222 23345677888888877663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.65 Score=36.74 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445666666677777777777777665 346667777777776543 3344444432 112222334666677
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 359 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
+.+.++++.-++.+++. +...+..+... ++.+.|.+++++ ++++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777752 22223333333 677777777765 234556666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.083 Score=45.78 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHH
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----P---FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAI 418 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 418 (507)
.|+.-++. .+.|++.+|...|... | ..||. +.=|..++...|+++.|..+|..+.+-.|.+ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 56665554 4778899999999877 2 23333 3346788999999999999999998877665 567889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 010575 419 LSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999743
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=39.53 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMK--------------SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---- 373 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 373 (507)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555544332 11134455556666666666666666666655544
Q ss_pred CCCCCHHHHHHHHH
Q 010575 374 PFEANAAIWGSLLA 387 (507)
Q Consensus 374 ~~~~~~~~~~~l~~ 387 (507)
++.-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33334555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.33 Score=43.21 Aligned_cols=109 Identities=6% Similarity=-0.036 Sum_probs=45.1
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHH----HHHHHHHhcCCHHHH
Q 010575 89 LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWN----TMVAGYAKVGDLNNA 163 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~----~li~~~~~~~~~~~A 163 (507)
.|++.+|-..++++++.- +-|...++.-=++|.-.|+.+.-...++++... .|+...|. ...-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444444432 223334444444444444444444444444433 33332221 112233334555555
Q ss_pred HHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHH
Q 010575 164 RALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 164 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
++.-++..+- |..+..++...+-..|++.++.++.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5544444432 2223333444444445555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.022 Score=34.43 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 413 SGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|.++..++.+|.+.|++++|++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999743
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=38.43 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred HHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHHcCCc
Q 010575 356 LLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN----SGNYAILSNIYAILGRW 429 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 429 (507)
++...|+++.|++.|.+. . ...++..||.=..++.-.|+.++|..-+++++++.-+. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445667777777777665 2 22355667777777777777777777777777654321 12455666677777777
Q ss_pred hHHHHHHHHHHhCCC
Q 010575 430 NESGKIRKVMRDMGV 444 (507)
Q Consensus 430 ~~A~~~~~~~~~~~~ 444 (507)
+.|..=|+..-+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777776654443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.58 E-value=3.8 Score=43.30 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHH----HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hH--H
Q 010575 207 KPDEIAMLAALSA----CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-IT--W 279 (507)
Q Consensus 207 ~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~ 279 (507)
.|+...+..+..+ +...+.+++|.-.|+..-+. ..-+.+|..+|+|.+|..+-.++...-. .. -
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 4566555544444 44556666666665544322 2345667777888888877777665322 22 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..|+.-+...+++-+|-++..+.... |. ..+..+++...+++|.++...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 55677777888888887777765542 21 123334455556666555433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.47 E-value=3.2 Score=41.70 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSV 276 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 276 (507)
....|+..|...++++.|..++-...+.++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344588999999999999999988877544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.077 Score=45.85 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=76.1
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC-----------
Q 010575 29 AYSIFTHKS--KPDVYLYNTTIKALCQT-----DNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLS----------- 90 (507)
Q Consensus 29 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 90 (507)
.++.|...+ ++|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46777888888877543 566777788899999999999999999998875533
Q ss_pred -----CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 91 -----TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 91 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223567889999999999999999999999988775
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.77 Score=34.97 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
+.-+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555566666666666555442 244555555566666666666666666665555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.5 Score=39.63 Aligned_cols=375 Identities=13% Similarity=0.106 Sum_probs=206.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 010575 60 AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSL 139 (507)
Q Consensus 60 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 139 (507)
-+++=+++++ -+.|..+|-.|+.-+...+..++..+++++|..- ++--..+|..-+.+-....++.....+|.+...
T Consensus 28 ~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 3455555554 3457788999999999999999999999999653 233456677777777778899999999999888
Q ss_pred CCCChhhHHHHHHHHHhcCCHH------HHHHHHHhcC-----C-CChhHHHHHHHH---HHhCCCh------hHHHHHH
Q 010575 140 RVWNVAVWNTMVAGYAKVGDLN------NARALFELMT-----E-KNVISWTTLIAG---YAQMDQP------NEAITLF 198 (507)
Q Consensus 140 ~~p~~~~~~~li~~~~~~~~~~------~A~~~~~~~~-----~-~~~~~~~~li~~---~~~~~~~------~~a~~~~ 198 (507)
...+...|...+..--+.++.- ...+.|+... + .....|+..+.. .-..|.+ +...+.|
T Consensus 105 k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 105 KSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred hhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 7667888888777665544221 1122222222 1 233445544433 2233443 4455667
Q ss_pred HHHhHCCCCCCHHHHH------HHHHHHhc---cC----CHHHHHHHHHHHHHc--CCC----CchhHHH----------
Q 010575 199 RRMQVENVKPDEIAML------AALSACAQ---LG----AVELGEWIHNYIEQY--GLN----TIVPLNN---------- 249 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~------~ll~~~~~---~~----~~~~a~~~~~~~~~~--~~~----~~~~~~~---------- 249 (507)
.+|+...+..-...|. .-++.... .| -+-.|.+.++++... |.. .+..+++
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 7776532211111111 11111000 01 123344444444321 111 0111111
Q ss_pred ----------------------------HH--------------HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010575 250 ----------------------------AL--------------IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLA 287 (507)
Q Consensus 250 ----------------------------~l--------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 287 (507)
.. -..+...++-+.|......-.+-.+..--.+...|.
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 11 111122344444444444332211110000111111
Q ss_pred HcCChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 288 LHGLGREALDMFSRMER--------------ARV---------------KPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~--------------~g~---------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
...+-+.....|+...+ .+. .--...|...+.+-.+...++.|..+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 11111111111111100 011 1112345667777777788999999999998
Q ss_pred HhhC-CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CC
Q 010575 339 SRYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW-GSLLAASNIYGDVELGECALQHLIKLEPH--NS 413 (507)
Q Consensus 339 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~ 413 (507)
+. + +.+++..+++++.-+ ..|+..-|..+|+.- ..-||...| .-.+.-+...++-+.|..+|+..++.-.. -.
T Consensus 425 k~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 KE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred cc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 77 5 667888888888755 568889999999854 334555544 55666678889999999999977542222 24
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.+|..+++--..-|+...+..+=+.+
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 57888887777888887777665555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.18 E-value=1 Score=43.36 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred HHHHhCCChhHHHHHHH-HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 183 AGYAQMDQPNEAITLFR-RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 183 ~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
....-.++++.+.++.+ .-.-..++ ......++.-+.+.|..+.|..+... . ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 34455667777666554 11111121 33456666667777777777666432 2 1334556677777
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 262 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
+.|.++.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77777765554 555777777777777887777777775432 334555556667766666666555543
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 010575 342 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 374 (507)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (507)
| -++....++.-.|+.++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 12333444555667777666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.9 Score=37.25 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..-|.+.|.+.-|..-++.+++.-|+.+ .++..+..+|.+.|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44567889999999999999988766643 456677889999999999998877664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.9 Score=43.58 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 290 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (507)
...-+..+.+...++.|..+.+ ..+..++ ........+-+.+.|++++|...|-+...--.. ..++.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 3445555566666666655533 2222222 122333344445667777776666544321111 12344445555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC-CChhHHHHHHHHHhhcCCHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKL 369 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (507)
+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..-+ |.. -|. ...+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~~fd~---e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEWFFDV---ETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cceeeeH---HHHHHHHHHhChHHHHHHH
Confidence 555666666667666654 333345567777777777766655544431 211 122 2345555566666666666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 370 LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
-.+.+. +......+ +...+++++|.++++.+
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 655532 23223322 34567777777776654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.1 Score=40.51 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHH
Q 010575 156 KVGDLNNARALFELMTEK------NVISWTTLIAGYAQMDQPNEAIT 196 (507)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 196 (507)
...+.++|+..+.+...+ --.++..+..+....|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344555555555443321 11234444455555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.7 Score=35.26 Aligned_cols=31 Identities=0% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHccCCcHH
Q 010575 64 YNKIQASALRPDNYSFPFVLKAVVKLSTIEL 94 (507)
Q Consensus 64 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 94 (507)
+..+.+.+++|+...+..+++.+.+.|.+..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334445566666666666666666665443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.099 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+....|+.+.|++.|.+++.+-|..+++|++-+.++.-+|+.++|++=+++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999998888753
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.37 Score=41.88 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=72.4
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-------------
Q 010575 165 ALFELMT--EKNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG------------- 224 (507)
Q Consensus 165 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------- 224 (507)
+.|.... ++|-.+|-..+..+.. .+.++-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344443 3555666666655543 3556666677778888888888888888887765432
Q ss_pred ---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 010575 225 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMK 272 (507)
Q Consensus 225 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 272 (507)
+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2245688999999999999999999999998876643 33334433333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.059 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777664
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.069 Score=30.51 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998843
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.4 Score=37.26 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=79.2
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCcccHHHHHH-------HHHccC-CcHHHHHHHHHHHHc----C----CCCc-----
Q 010575 52 CQTDNPLNAVILYNKIQASALRPDNYSFPFVLK-------AVVKLS-TIELGREIHCQTVGT----G----LDSD----- 110 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-------~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 110 (507)
.+.|+.+.|...+.+........++.....|.+ .....+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 355666777766666654321122222222222 222334 666666655555433 1 1222
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHhcccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH
Q 010575 111 VHVVAALIQMYASCKCIY---DARKVFDELSLRVWN-VAVWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIA 183 (507)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 183 (507)
..+...++.+|...+..+ +|..+++.+....|+ +..+..-+..+.+.++.+.+.+.+.+|... ....+..++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 245566677777766644 455566666555554 444545566666677777777777776642 2233444443
Q ss_pred HHH--hCCChhHHHHHHHHHhHCCCCCCH
Q 010575 184 GYA--QMDQPNEAITLFRRMQVENVKPDE 210 (507)
Q Consensus 184 ~~~--~~~~~~~a~~~~~~m~~~~~~~~~ 210 (507)
.+. .......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 112234455555555444344433
|
It is also involved in sporulation []. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.50 E-value=12 Score=43.16 Aligned_cols=312 Identities=9% Similarity=0.032 Sum_probs=173.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhccc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCC
Q 010575 116 ALIQMYASCKCIYDARKVFDELSL----RVWNVAVWNTMVAGYAKVGDLNNARALFEL-MTEKNVISWTTLIAGYAQMDQ 190 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 190 (507)
.+..+-.+++.+..|...+++-.. .......+-.+...|...+++|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 455566778889999999988311 111222344444588888888887777763 333332 234555677899
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHHHHHH
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN-ALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~ 269 (507)
++.|...|+.+.+.+ ++...+++-++......|.++...-..+-..... .+....++ .=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3336677777777777777777766544433322 22232332 22445577788877777665
Q ss_pred hcCCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 270 NMKNKSVITWTTM--IAGLALHGLGR--EALDMFSRMERARVKP--------N-EITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 270 ~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..+..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++..+.-. +.+.-.+.+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK- 1617 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh-
Confidence 4555555554 22222222111 1112233222211111 0 12233333322211 1111111111
Q ss_pred hHHhhCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHhhC------C---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 337 MKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM------P---FEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 337 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
+..++ ..-|..-+..-....+..+-+--+++. . ...-..+|..........|.++.|...
T Consensus 1618 -----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1618 -----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 22222 122222221111111122222222221 1 112356888999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
+-.+.+..+ +.++.-.+..+++.|+-..|+.++++..+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 988877663 46888999999999999999999998875444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.81 Score=36.73 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-HHHH--HHHHHhhcCC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE-QYGC--MIDLLGRAGY 362 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~ 362 (507)
++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.. .-.|-+. -... -.-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566666666666666655432221 1112223345666677777777766543 1112111 1111 1223456677
Q ss_pred HHHHHHHHhhCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 363 LQEAEKLLRRMP--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 363 ~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+++...-.+.+. ..| ....-..|.-+-.+.|++.+|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666662 222 122234455556677777777777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.69 Score=37.09 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=78.4
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH-HHHHH-
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH-VVAAL- 117 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 117 (507)
...|..-+. +.+.+..++|+..|..+.+.|...-+.. -..........|+...|...|+++-+....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 3566777888888888877654321111 1111223457778888888888876655444332 11111
Q ss_pred -HHHHHhcCChHHHHHHHHhcccC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 118 -IQMYASCKCIYDARKVFDELSLR-VW-NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 118 -~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.-.+...|.+++...-.+-+... .| ....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22355678888877777776554 23 344455677777788888888888887764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.8 Score=36.92 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 212 AMLAALSACAQLGAVE---LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 273 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 273 (507)
++..++.++...+..+ +|..+++.+.+.. +-.+.++-.-+..+.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4445555565555443 3344444443222 22233333344555555666666666666554
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.082 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888999999999888654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.9 Score=35.07 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|. .-++.-.|++..|.+-+...-......|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35788888888888888888888888877533222222222 22344568888887766666543222333333333322
Q ss_pred HHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHcC
Q 010575 356 LLGRAGYLQEAEKL-LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYAILSNIYAILG 427 (507)
Q Consensus 356 ~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 427 (507)
+.-++.+|..- .++.. ..+..-|...+..+.-..-.+ +.+++++.....++ ..+|.-|+.-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 33456666654 34442 234444544443332111111 23334443332232 346778888888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010575 428 RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 428 ~~~~A~~~~~~~~~~~~ 444 (507)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999988775554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.3 Score=41.99 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 447 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (507)
..+..++.+.|+.++|++.++.+++..|. +..+...|+.++...+.+.++..++.+-.+....+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44555666677777777777777665554 344666777777777777777777766654433333
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.3 Score=35.26 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=35.1
Q ss_pred HHHHHhhc-CCHHHHHHHHhhC-----CCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 353 MIDLLGRA-GYLQEAEKLLRRM-----PFEANAAIWGSLLA---ASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 353 l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+...|... .++++|+..|+.. +.+.+...-..++. --...+++.+|+.+|+++....-+++
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44444443 5666777776665 11222222233333 23577899999999999866554443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.11 Score=46.18 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=79.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 393 (507)
-...|.++|.+++|+.+|..... +.| ++.++..-..+|.+..++..|..-...+ .. +.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568899999999999998874 455 8888888889999999999888766655 11 112234444445555678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+..+|.+-++.++++.|++...-- .+.+.....|+.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK----~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK----SLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH----HHHHhcchHhhhHHh
Confidence 899999999999999999654433 334444444444333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.53 Score=36.78 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=30.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 391 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..++.+++..++..+.-+.|+.+..-..-++.+...|+|++|+++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35555555555555555555555555555555556666666666665554433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.22 Score=44.39 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
-..-|.++|.+++|+..|...... .| |++++..-..+|.+...+..|+.-...+..- -..-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 467799999999999999988775 55 8899999999999999999888777766632 011123344444444445
Q ss_pred CCHHHHHHHHhhC-CCCCCH
Q 010575 361 GYLQEAEKLLRRM-PFEANA 379 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~ 379 (507)
|...+|.+-++.. ...|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 6666666666655 556663
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.98 Score=34.57 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhc-cCCCC-CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYG---DVELGECALQHLIK-LEPHN-SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+-..+.+++.+.. +..+.+.+++...+ -.|.. .....-|+-.+.+.|+++.++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555554433 34455666666654 33332 2233344556666666666666666665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.58 E-value=12 Score=39.93 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
++.--+.|-+.+|..++..=.+.-...|.+...-+.....+++|.-.|+..-+. ...+.+|...|+|.+|+
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 333344445555554443322222233333344444445555555444432110 12344555556666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
.+..++.. +..--..+-..|+..+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 55554432 11111112234555555566666665555555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.4 Score=36.85 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEP----HNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
....+|..++..+.+.|.++.|...+.++.+.++ ..+.+...-+..+...|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556888899999999999999999999977552 2466777889999999999999999988875
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.084 Score=39.94 Aligned_cols=43 Identities=40% Similarity=0.623 Sum_probs=33.3
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccc
Q 010575 449 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESD 503 (507)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 503 (507)
|++|+.. +.|.+++.+||+. ++...+...||.|+...+.|..+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~ 44 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVD 44 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCch
Confidence 6788666 9999999999988 44456677788888888877543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.41 Score=30.13 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 491 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 491 (507)
.+..++-++.+.|++++|.++.+.+.+ .+|++.....+...+.+.+++-|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 355678899999999999999999973 477888888888888888888763
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.76 Score=36.63 Aligned_cols=71 Identities=21% Similarity=0.085 Sum_probs=41.4
Q ss_pred hhcCCHHHHHHHHhhC-CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 358 GRAGYLQEAEKLLRRM-PFEANAAIWGS-LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
.+.++.+++..+++.+ -.+|....... -...+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556777777777666 33443333222 22235667777777777777766666666555556555555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.48 Score=41.89 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++..++..+...|+.+.+...+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3456666777777777888888888888888777778888888888888888888777775
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=6.2 Score=35.52 Aligned_cols=238 Identities=12% Similarity=0.004 Sum_probs=140.9
Q ss_pred HhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc----HHHHHHHHHHHHcCC
Q 010575 32 IFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI----ELGREIHCQTVGTGL 107 (507)
Q Consensus 32 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~ 107 (507)
+++.+..+|.......+.++...|.. .+...+..+.. .+|+..=...+.+++..|+. +.+...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 44444567777777788888777754 34444444544 24555555667777777764 4566666665443
Q ss_pred CCcHHHHHHHHHHHHhcCCh-----HHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 010575 108 DSDVHVVAALIQMYASCKCI-----YDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI 182 (507)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 182 (507)
+++..+....+.++...+.. ..+...+..... .++..+-...+.++++.++.+....+...+..+|...-..-+
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 45566666666666655421 233333333222 225556667777778888755554555555566666555555
Q ss_pred HHHHhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 183 AGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 183 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
.++.+.+ +...+...+..++. .++...-...+.++.+.++. .+...+-...+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 5665543 24567777766664 45667777788888888885 45554444444432 234677888888885
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHH
Q 010575 262 GKALQVFENMKN--KSVITWTTMIAGL 286 (507)
Q Consensus 262 ~~A~~~~~~~~~--~~~~~~~~l~~~~ 286 (507)
+|...+..+.+ +|..+-...+.++
T Consensus 252 -~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 57777777654 4554444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.2 Score=34.31 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH--HH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG--CM 353 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 353 (507)
.+..+...|++.|+.++|++.|.++.+....|.. ..+..+|+.....+++..+.....++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666677777777777777776665433333 3445566666666777777766666654311111111111 11
Q ss_pred H--HHHhhcCCHHHHHHHHhhC
Q 010575 354 I--DLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 354 ~--~~~~~~g~~~~A~~~~~~~ 373 (507)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1233467777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.88 E-value=4.1 Score=32.62 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-GCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 397 (507)
.-...++.+.+..++..+.- +.|..... ..-...+.+.|++.+|..+|+.+ ...|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34466777888888777763 34443222 12233466778888888888887 333444444555555544333223
Q ss_pred HHHHHHHHhccCCC
Q 010575 398 GECALQHLIKLEPH 411 (507)
Q Consensus 398 A~~~~~~~~~~~p~ 411 (507)
=..+-+++++-.++
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 33334444444443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.6 Score=39.81 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=88.1
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
-...|+.-.|-+-+......+.-.|+.....+. .+...|.++.+...+... .+.....+...++....+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344577766665555555443445554444333 355678888888888776 2334566778888888888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCc
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 449 (507)
....+.++...-+++.+....+..-...|-++++...++++...+.+...|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 998888888777767666666666667788899999998887655555555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.54 Score=41.55 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 010575 91 TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELS 138 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 138 (507)
+++++..++..-+..|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455555444555555555555555555555555555554444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=7.4 Score=34.39 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
......|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444578899999999999999999999999999999999999999888888888774
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.28 Score=26.98 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+..++.+.|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555555555554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.33 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+++.+...|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555556666666666665553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.22 Score=39.64 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555544444445555555555555555555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.9 Score=32.79 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=40.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKI----EQYGCMIDLLGRAGYLQEAEKLLRRMPFE-ANAAIWGSLLAASNIYG 393 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g 393 (507)
..+...+++++|+..++..... +.|. ..--.|.......|.+++|+..++..... -.......-...+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 3455556666666666555421 2221 11122334445556666666666554211 01111222233455555
Q ss_pred CHHHHHHHHHHHhccC
Q 010575 394 DVELGECALQHLIKLE 409 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~ 409 (507)
+-++|...|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.7 Score=39.32 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--c----CChHHHHHHHHhcccCCC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYAS--C----KCIYDARKVFDELSLRVW 142 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~p 142 (507)
+....+++.+.+.|+..+..+|-+..-.... . ....+|..+|+.|++..|
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 4556788888888888777666553333322 1 124567777777777644
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.94 E-value=16 Score=37.15 Aligned_cols=100 Identities=11% Similarity=-0.071 Sum_probs=53.2
Q ss_pred HHHHHccCChhHHHHHhccCCC--C---CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK--P---DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLST 91 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 91 (507)
++-+.+.+.+++|.+..+.... + -...+...|..+...|++++|-...-.|.. -+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3445566677777777666543 1 123466667777777777777776666654 234445555555555544
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 92 IELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
......+ +-......+..+|..++..+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4332221 1111112344556666655554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.24 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.++..++.++.+.|++++|++.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=9.3 Score=34.40 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
.+.++...|+. +|...+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555544444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.28 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+|..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.50 E-value=3.1 Score=34.41 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
..+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666777777777777777777777665433332 2345556666666677666666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.42 E-value=8.6 Score=33.11 Aligned_cols=200 Identities=13% Similarity=-0.012 Sum_probs=111.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHHc
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS--VITWTTMIAGLALH 289 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~ 289 (507)
.|.....+|....++++|...+.+..+.- +.+...| -..+.++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444556666777777766665554221 1111111 11223444444444444422 23455556667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHhhcCCHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG----IEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
|.++-|-..+++.-+. ...-+++.|+++|++...-.. ...-...+......+++..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 7777666666554321 123345555555554432110 01122345556667778888888
Q ss_pred HHHHHhhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 366 AEKLLRRMP-------FEANA-AIWGSLLAASNIYGDVELGECALQHLIK----LEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 366 A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
|-..+.+-. .-|+. ..+...|-.+....|+..|..+++.-.+ ..|++..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 777666541 12232 2355566667777899999999988654 3567778888888666 457777776
Q ss_pred HHH
Q 010575 434 KIR 436 (507)
Q Consensus 434 ~~~ 436 (507)
++.
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.28 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677778888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.40 E-value=8.6 Score=33.09 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHhCC
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKN--VISWTTLIAGYAQMD 189 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 189 (507)
.|..-..+|....++++|...+.+..+-.- +.. .+.-...++.|.-+.+++.+.+ +..|+--...|..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs-------lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS-------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 344445556666666666665555432100 111 1111223334444444444321 223444555666666
Q ss_pred ChhHHHHHHHHH
Q 010575 190 QPNEAITLFRRM 201 (507)
Q Consensus 190 ~~~~a~~~~~~m 201 (507)
.++.|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 666665555543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.29 E-value=9.4 Score=33.31 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=107.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHC---CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cC-CCCchhHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVE---NV--KPDEIAMLAALSACAQLGAVELGEWIHNYIEQ----YG-LNTIVPLNN 249 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~ 249 (507)
.+|..+.+.+++++....|.+|+.- .+ .-+....+.+++-.+...+.+....+++.-.+ .. -..--.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3445555555555555555554321 01 11233444454444444444443333332211 10 011111223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC------------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK------------S---VITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEIT 313 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~ 313 (507)
.|...|...+.+.+..++++++.+. + ...|..-|..|..+.+-.+...++++.... ..-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4566666667777766666665431 1 245666778888888877777788876542 23455544
Q ss_pred HHHHHHHH-----hccCcHHHHHHHHHHhHHhh---CCCCCh--hHHHHHHHHHhhcCC----HHHHHHHHhhCCCCCCH
Q 010575 314 FIAILSAC-----CHVGLVELGRRYFNIMKSRY---GIEPKI--EQYGCMIDLLGRAGY----LQEAEKLLRRMPFEANA 379 (507)
Q Consensus 314 ~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~ 379 (507)
.. +|+-| .+.|.+++|..-|-++.+.+ |-+... .-|..|.+.+.+.|- ..+|.- .+..|..
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEI 304 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEI 304 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHH
Confidence 43 34433 46688888876555554432 222222 224455566665541 111100 0233455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQH 404 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (507)
.....++.+|.. ++..+-++++..
T Consensus 305 lAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 305 LAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 566778877743 455444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.3 Score=30.74 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
.-+...-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34566667777777889999999999999999999999999999998764433 336766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.80 E-value=4.2 Score=33.71 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=55.4
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcC
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYG 393 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 393 (507)
+...|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.-..+. .+.|. ......=..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456666666666655542 2221 223333444556666666666655544 33331 112222234677778
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+++|+.-|+++++.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888999999998888885544444443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.52 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666665554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.77 E-value=3.5 Score=36.63 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQYGCM 353 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 353 (507)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44556666666666666666666666652 23556666677777777777766666666554 23556655555444
Q ss_pred HHH
Q 010575 354 IDL 356 (507)
Q Consensus 354 ~~~ 356 (507)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.1 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
-.+..++.+.|++++|.+..+.++++.|++..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 44667889999999999999999999999765433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=3 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+...+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999999999999999999998877753
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.46 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDAR 131 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~ 131 (507)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555566666666666665553
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.99 E-value=44 Score=38.94 Aligned_cols=63 Identities=19% Similarity=-0.013 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..+|....+...++|+++.|...+-.+....-+..+.-.+.-....|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 456777777777788888888766555322244455666667778888888888888887543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.66 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..++.+|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999864
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.59 E-value=11 Score=34.19 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHHc
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQ--LG----AVELGEWIHNYIEQY 239 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 239 (507)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34556677888888877777766554333322 11 234566666666654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.51 E-value=6.1 Score=28.38 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.-++.+-+..+....+.|++......+++|.+.+|+..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566777777777888999999999999999999999999999988864333 4445665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.48 E-value=7 Score=38.25 Aligned_cols=130 Identities=16% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
..+.++..+.+.|-.++|+.+--.-.. -.....+.|+++.|.++..+. .+..-|..|..+..+.+++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~----------rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQ----------RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhh----------hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccch
Confidence 345566666666666666654322111 123344556666666655443 24455677777777777777
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
.|.+.|....+ |..|+-.+...|+.+....+-....+.|. . |.-.-+|...|+++++.+++.
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 77766665543 23344445555555554444444444441 1 122223444555555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.74 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999999863
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.7 Score=43.51 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=52.7
Q ss_pred HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
+...+.++.|..++.++ ...||-..|...- .++.+.+++..|..=+.++++.+|.....|..-+.++.+.+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666555 4455444433322 456667777777777777777777777777777777777777777777
Q ss_pred HHHHHH
Q 010575 435 IRKVMR 440 (507)
Q Consensus 435 ~~~~~~ 440 (507)
.|+...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 666543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.13 E-value=11 Score=30.67 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhcCCC
Q 010575 96 REIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVG--DLNNARALFELMTEK 173 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~ 173 (507)
.+.++.+.+.++.|+...+..+++.+.+.|++.....++.-=.-. |.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhh--
Confidence 356667778899999999999999999999988877776543322 4444333332222211 1344555555553
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.++...-..+++...+.
T Consensus 90 --~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 245677788889999999999887753321 122 234566666666666655666555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.13 E-value=22 Score=34.29 Aligned_cols=174 Identities=7% Similarity=0.040 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
|....-+++..+..+.++.-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+..+. |...-..|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 333344555555555555555555555543 3444555666666665 445566666666654322 222222333333
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNI 391 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 391 (507)
..++.+.+..+|.++..+ +.|. ...|..+...- ..+.+....+..++ +...-...+.-+-.-|..
T Consensus 143 -Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 -EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 336666666666666542 2221 12343333221 23444444444444 222233344444455556
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
..++.+|++++..+++.+..+..+...++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 666677777776666665555554444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.08 E-value=2.8 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 56 NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344666777777777888888888888888888888888888888776332 223445655544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.53 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++..++.++.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998754
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.91 E-value=23 Score=34.12 Aligned_cols=238 Identities=10% Similarity=0.064 Sum_probs=120.8
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHhcCCH-HH
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQL------GAVELGEWIHNYIEQYG-L-NTIVPLNNALIDMYAKSGKI-GK 263 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~-~~ 263 (507)
....+|++..+ .-|+...+...|..|... ..+.....+++.....+ . +.....|..+.-.++..... +-
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34456666554 235555565566655432 23444455555554433 2 23345555565556555543 33
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHH--HHHHHHhH
Q 010575 264 ALQVFENMKNKSVITWTTMIAGLALH-GLGREA-LDMFSRMERARVKPNEITFIAILSACCHVGL-VELG--RRYFNIMK 338 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~~ 338 (507)
|..+..+....+...|-.-+...... .+++-- .++|......-..+....|.... .|+ ++.. ..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 44444455556666665555444422 122111 11222222221122223333322 122 1111 11222222
Q ss_pred HhhCCCCChhH-HHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCC
Q 010575 339 SRYGIEPKIEQ-YGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAAS--NIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 339 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+ -..|+..+ -+.+++-+.+.|-..+|...+..+ .. .|+...|..++..- ...-+...+..+|+.++.-.-.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 22344333 345677777888888888888877 22 34666777776532 222347777888888865333667
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
..|......-...|..+.+-.++-+.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHH
Confidence 78887776666777777776665544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.85 E-value=28 Score=35.07 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=160.9
Q ss_pred HHHHHHHHHhcCCC-ChhHHHHHHHH-----HHhCCChhHHHHHHHHHhH-------CCCCCCHHHHHHHHHHHhccC--
Q 010575 160 LNNARALFELMTEK-NVISWTTLIAG-----YAQMDQPNEAITLFRRMQV-------ENVKPDEIAMLAALSACAQLG-- 224 (507)
Q Consensus 160 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-- 224 (507)
...|.++++...+. ++..-..+... +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46778888777653 33333333332 4456789999999999876 44 2224455666666543
Q ss_pred ---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCChH
Q 010575 225 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS---GKIGKALQVFENMKNK-SVITWTTMIAGLA----LHGLGR 293 (507)
Q Consensus 225 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~ 293 (507)
+.+.|..++....+.| .|+.... +..+|... .+...|.++|....+. .+.++-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 6677999999888888 3444433 33333332 4678899999887764 3333333333333 234788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH---hh----cCCHHHH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GR----AGYLQEA 366 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 366 (507)
.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+... +.+.....-..++... .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 9999999998887 4443322333344444 6666666666555543 3322211111111111 11 2356777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-C--CchHHHHHHHHH
Q 010575 367 EKLLRRMPFEANAAIWGSLLAASNIY----GDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-G--RWNESGKIRKVM 439 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~ 439 (507)
..++.+...+-+......+...|... .+++.|...+.++.... ......++..+... | .+..|.+++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 77777775556666666666665433 36888888888886666 56677777766543 1 167788888777
Q ss_pred Hh
Q 010575 440 RD 441 (507)
Q Consensus 440 ~~ 441 (507)
..
T Consensus 536 ~~ 537 (552)
T KOG1550|consen 536 SE 537 (552)
T ss_pred Hh
Confidence 54
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.75 E-value=12 Score=36.84 Aligned_cols=150 Identities=17% Similarity=0.094 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 257 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
-.|+++.|..++..+.++ ..+.++..+.+.|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 456777777766665532 334455566667766666643 3333211 1223467888888877655
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 337 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+-..+.+.+.+|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 43 56778899999999999999999988773 256677777788887766666666655555542
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q 010575 417 AILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...+|...|+++++.+++.+.
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhc
Confidence 233677889999999988665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.32 E-value=3.1 Score=34.69 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=50.4
Q ss_pred hhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCCchH
Q 010575 358 GRAGYLQEAEKLLRRMPFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH----NSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 431 (507)
.+.|+ ++|.+.|-.+...| +.......+..|....|.+++++++-+++++.+. |+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 56666666662222 3334444445555677889999999888775432 57888899999999999888
Q ss_pred HH
Q 010575 432 SG 433 (507)
Q Consensus 432 A~ 433 (507)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.18 E-value=12 Score=32.23 Aligned_cols=88 Identities=11% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHHhhcCCHHHHHHHHhhC---------CCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---------PFEANAAI-----------WGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+-+.+.|++.+|..-|.++ +.+|...- +..+-.++...|++-++++....++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 33445566666666555443 23343332 33334455678999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..-+.+....=+..+|.+=|..+..
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999988888888889888888763
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.7 Score=36.99 Aligned_cols=83 Identities=13% Similarity=-0.032 Sum_probs=44.7
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHH-HHHHHHHHcCCHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWG-SLLAASNIYGDVEL 397 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~ 397 (507)
|.....++.|+..|.+.+ -+.|+. ..|+.=+.++.+..+++.+..--.+. .+.||...-. .+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666666666555 335554 33344455555666666665544444 4455544333 33334455666666
Q ss_pred HHHHHHHHh
Q 010575 398 GECALQHLI 406 (507)
Q Consensus 398 A~~~~~~~~ 406 (507)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 666666663
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=17 Score=30.83 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
.||..+..-+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666677777777777766654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.36 E-value=2.7 Score=30.47 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666666777777777777777777777777777777665442 222225555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.26 E-value=20 Score=31.45 Aligned_cols=176 Identities=9% Similarity=0.032 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHhccc-------CCCChhhHHHHHHHHHhcCCH
Q 010575 91 TIELGREIHCQTVGTGLDSDV---HVVAALIQMYASCKCIYDARKVFDELSL-------RVWNVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~li~~~~~~~~~ 160 (507)
++++|+.-|+..++...+.-. .....++..+.+.|++++....|.++.. +..+..+.|+++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555555443222211 2223344555555555555555554432 122445555655555555555
Q ss_pred HHHHHHHHhcCC-----CChh----HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----------HHHHHHHHHHH
Q 010575 161 NNARALFELMTE-----KNVI----SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----------EIAMLAALSAC 220 (507)
Q Consensus 161 ~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~ 220 (507)
+-....++.-.+ .+.. +-+-|...|...+.+.+..++++++..+....+ ...|..-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 544444433221 1222 223466667777777777777777765421111 23466666677
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHH-----HHHhcCCHHHHHHH
Q 010575 221 AQLGAVELGEWIHNYIEQYGL-NTIVPLNNALID-----MYAKSGKIGKALQV 267 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~A~~~ 267 (507)
....+-.....++++...... -|.+.+. ..|+ ...+.|++++|..-
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 777776666777776554321 2333222 2232 23455677766543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.4 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+++|+.-|++++.++|+...++.+++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 466777777788888888888888888887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.63 E-value=7.8 Score=32.37 Aligned_cols=75 Identities=12% Similarity=-0.034 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh--CCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY--GIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
-+.|...|-++...+.--++.....|...|. ..|.+++++++....+-. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3667777777766655445444444444444 567777777777766532 22456777777777777777777664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.59 E-value=32 Score=33.20 Aligned_cols=391 Identities=14% Similarity=0.151 Sum_probs=196.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHH-HHcCCCchHHHHHHHHHHHcCCCCCccc-HH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKA-LCQTDNPLNAVILYNKIQASALRPDNYS-FP 80 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~ 80 (507)
+..|+..|...+..+-+.+.+.+.-.+|.+|.. .++..|-.-..- |..+-+++.|..+|.+-++. .|+... |.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~--npdsp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF--NPDSPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc--CCCChHHHH
Confidence 456899999999988888889999999988764 344555444333 33444588999999888773 455432 21
Q ss_pred HHHH---HHH-c-------cC-Cc-HHHHHHHHHHHH-cCCCCcHH--HHHH-H--HHHHHhcCCh-HHHHHHHHhcccC
Q 010575 81 FVLK---AVV-K-------LS-TI-ELGREIHCQTVG-TGLDSDVH--VVAA-L--IQMYASCKCI-YDARKVFDELSLR 140 (507)
Q Consensus 81 ~l~~---~~~-~-------~~-~~-~~a~~~~~~~~~-~~~~~~~~--~~~~-l--~~~~~~~g~~-~~A~~~~~~~~~~ 140 (507)
.-++ .++ + .| +. +.-.++-+.-.. ....++.. -++. . .......... +.-..+.+.+...
T Consensus 179 eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~ 258 (568)
T KOG2396|consen 179 EYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 111 0 01 00 010111110000 00111111 0000 0 1111111111 1122344555554
Q ss_pred CC-ChhhHHHHHH----HHHh---------------cCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC------Chh
Q 010575 141 VW-NVAVWNTMVA----GYAK---------------VGDLNNARALFELMTE--KNVISWTTLIAGYAQMD------QPN 192 (507)
Q Consensus 141 ~p-~~~~~~~li~----~~~~---------------~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~------~~~ 192 (507)
.| ++.+|..+.. .+.+ ..+.+....+|+...+ ++...|+..|..|...- ...
T Consensus 259 ~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~ 338 (568)
T KOG2396|consen 259 APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRIL 338 (568)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44 4444443322 2222 2233445677777765 34556666666554332 334
Q ss_pred HHHHHHHHHhHCC-CCC-CHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHH-HHH
Q 010575 193 EAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVEL-GEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKA-LQV 267 (507)
Q Consensus 193 ~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~ 267 (507)
....+|+.....+ ..+ ....|..+.-.+........ |..+. ..++..+...|..-+....... +.+-- ..+
T Consensus 339 h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l 414 (568)
T KOG2396|consen 339 HTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEEL 414 (568)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4455555554432 333 33455555555555544332 23332 2233445555554444444221 22211 112
Q ss_pred HHhcC----CCChhHHHHHHHHHHHcCC-hHH-HH-HHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHH
Q 010575 268 FENMK----NKSVITWTTMIAGLALHGL-GRE-AL-DMFSRMERARVKPNEITFI-AILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~-~~~-A~-~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
|.... .+-...|+... .++ ... .+ .++...... ..|+..|+. .++.-+.+.|-..+|...+..+..
T Consensus 415 ~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 415 FNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 22222 23334454444 122 111 11 122223333 345555543 566777788888999999988875
Q ss_pred hhCCCCChhHHHHHHHHH---hhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCC
Q 010575 340 RYGIEPKIEQYGCMIDLL---GRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK-LEPH 411 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~ 411 (507)
--+|+...|..++..= ..+| +.-+..+|+.| ....++..|...+.--...|..+.+-.++.++.+ ++|.
T Consensus 489 --lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 489 --LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred --CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 4456777777777543 2233 77777888877 2336777888888777788998888888888754 4554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.25 E-value=34 Score=33.16 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
|-...-+++..+..+-.+.-+..+..+|+.-| -+-..|..++.+|... ..+.-..+++++++..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445556666666666666677777776644 3556666677766666 445556666666665432 2333344444
Q ss_pred HHHhcCCHHHHHHHHHhcCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc
Q 010575 254 MYAKSGKIGKALQVFENMKNK------SV---ITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCH 323 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~ 323 (507)
.|-+ ++.+.+...|..+..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 5666666665554321 11 1333333211 2334444444444432 2222233344444445555
Q ss_pred cCcHHHHHHHHHHhHH
Q 010575 324 VGLVELGRRYFNIMKS 339 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~ 339 (507)
..++.+|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5566666666555554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.14 E-value=9.2 Score=34.23 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=66.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-KS--------VITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
|.+....+...++..-....+++.++..+-.++. ++ ..+|-.+ + -.-++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccc
Confidence 3344444455555555556677777777666654 21 2233222 2 23356788888888888899999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
..+++.++..+.+.+++..|.++...|..+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988888777764
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.59 E-value=13 Score=35.50 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---C---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH--
Q 010575 253 DMYAKSGKIGKALQVFENMKN---K---------SVITWTTMIAGLALHGLGREALDMFSRMER-------ARVKPNE-- 311 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~g~~p~~-- 311 (507)
+.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445667899999988875431 1 123567777777777877777777776653 4655532
Q ss_pred ---------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 312 ---------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 312 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
.+|+ ..-.+...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 2333 233467789999999999999874 4667788888888875
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=85.43 E-value=4.9 Score=31.61 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=58.3
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHccCC-cHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASA-----LRPDNYSFPFVLKAVVKLST-IELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
..|+++.-....+++...+.+++.+..-. -.-+..+|..++.+.++..- --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46777777777778887777777764311 02356678888888866655 4566778888888777888888888
Q ss_pred HHHHHHhc
Q 010575 117 LIQMYASC 124 (507)
Q Consensus 117 l~~~~~~~ 124 (507)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.36 E-value=0.66 Score=41.59 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 359 RAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
..|.+++|++.|... +..| ....|..=..++.+.+....|++-+..+++++|+...-|-.-..+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456677777777665 3333 33344444556667777777777777778888887777777777777778888888777
Q ss_pred HHHHhCCCc
Q 010575 437 KVMRDMGVK 445 (507)
Q Consensus 437 ~~~~~~~~~ 445 (507)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777666554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.5 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
..++..++.+|+|......++..+...|++++|++.+-.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666655554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.04 E-value=6 Score=33.89 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHH-------HHHHHHHHHhccC--CC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 381 IWGSLLAASNIYGDVE-------LGECALQHLIKLE--PH----NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.+..+.+.|...|+.+ .|...|+++.+.. |. ...+...++.+..+.|++++|.++|.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555666777777744 4455555554322 22 2356778899999999999999999998643
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.52 E-value=55 Score=34.13 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=91.2
Q ss_pred HhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHh
Q 010575 256 AKSGKIGKALQVFENMKN--------KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT---FIAIL--SACC 322 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~l~--~~~~ 322 (507)
...|+++.|.++-+.... ..++.+..+..+..-.|++++|..+..+..+.--.-+... |..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345777777776665443 2455667777777788888888888776654322223222 22222 2345
Q ss_pred ccCc--HHHHHHHHHHhHHhhCCC-C----ChhHHHHHHHHHhhc-CCHHHHHHHHhhC---CCCCCHHHH--HHHHHHH
Q 010575 323 HVGL--VELGRRYFNIMKSRYGIE-P----KIEQYGCMIDLLGRA-GYLQEAEKLLRRM---PFEANAAIW--GSLLAAS 389 (507)
Q Consensus 323 ~~g~--~~~a~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~~~~~~~--~~l~~~~ 389 (507)
.+|. ++.....|......+... | -..++..+..++.+. +...+|..-+.-- ...|-.... ..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5663 233333333333221111 1 122333344444441 1222222222211 112222222 2566777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC-Cc-hHHH---H--HHHHHHcCCchHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHN-SG-NYAI---L--SNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~-~~-~~~~---l--~~~~~~~g~~~~A~~~~~~~ 439 (507)
...|+.++|...+.++..+--++ +. .|.. . .......|+.+++.....+-
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 88899999999888885532221 11 1221 1 12223568888888777664
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.40 E-value=2.1 Score=25.68 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
..|+.+|.+.|+.+.|.++++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46788999999999999999888743
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=84.13 E-value=1.7 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877643
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=11 Score=35.89 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|+++.+.+.+..... -+.....+..+++....+.|++++|..+-..| +. -.++.............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 345666666666555543 22233445555666666666666666666555 11 113333333333344455566666
Q ss_pred HHHHHHhccCCC
Q 010575 400 CALQHLIKLEPH 411 (507)
Q Consensus 400 ~~~~~~~~~~p~ 411 (507)
..+++++.++|+
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 666666665554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.35 E-value=0.75 Score=36.52 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 010575 45 NTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC 124 (507)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (507)
..++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.. +..-...+++.+.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhc
Confidence 3457777788888889899998887665566777888899999988878877776611 112234566777777
Q ss_pred CChHHHHHHHHhcc
Q 010575 125 KCIYDARKVFDELS 138 (507)
Q Consensus 125 g~~~~A~~~~~~~~ 138 (507)
|.+++|.-++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777777766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.22 E-value=7.6 Score=32.79 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=23.4
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
..+.+.+.+++++...++-++..+. |......+++.|+-.|++++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344444444444444444444322 3334444444455555555544444433
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.10 E-value=15 Score=26.61 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
..+...|++++|..+.+...-||...|..|.. .+.|..+++..-+..|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 44556677777777777776677777766544 35666666666666666665 3444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.04 E-value=3.8 Score=39.80 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=63.0
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
-.|+...|...+..+.- ..|- ......|.+.+.+.|....|..++.+. . ....+-++..+.+++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34777777777766652 2332 223344556666666666777666554 1 123445667777778888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
++.|+++++.+|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888887776666644433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.67 E-value=22 Score=28.13 Aligned_cols=51 Identities=6% Similarity=-0.094 Sum_probs=23.2
Q ss_pred cCCcHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 010575 89 LSTIELGREIHCQTVGTGLD-SDVHVVAALIQMYASCKCIYDARKVFDELSLRV 141 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 141 (507)
.++++.+..+++.|.-.-+. +...++ -...+...|++++|.++|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45555555555555443221 111122 1223445555555555555555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.16 E-value=64 Score=33.08 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=79.8
Q ss_pred HHHHHHHHHH-ccCChhHHHHHhccCC----CCCc-----ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCC----CCcc
Q 010575 12 LLSRFIDSCS-SLGFSDYAYSIFTHKS----KPDV-----YLYNTTIKALCQTDNPLNAVILYNKIQASALR----PDNY 77 (507)
Q Consensus 12 ~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~ 77 (507)
++-.+...|. ...+++.|+..+++.. +++. .+-..+++.+.+.+... |...+++..+.--. +-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4555666665 5677888888777642 1221 11223445555555444 77777776653111 1112
Q ss_pred cHHHH-HHHHHccCCcHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHH--hcCChHHHHHHHHhcccC-----------
Q 010575 78 SFPFV-LKAVVKLSTIELGREIHCQTVGTG---LDSDVHVVAALIQMYA--SCKCIYDARKVFDELSLR----------- 140 (507)
Q Consensus 78 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~----------- 140 (507)
.|..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. +.+..+++.+.++++...
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22222 222223367888888777776543 2334444444554433 345455555555544111
Q ss_pred CCChhhHHHHHHHH--HhcCCHHHHHHHHHhc
Q 010575 141 VWNVAVWNTMVAGY--AKVGDLNNARALFELM 170 (507)
Q Consensus 141 ~p~~~~~~~li~~~--~~~~~~~~A~~~~~~~ 170 (507)
.|-..+|..+++.+ ...|+++.+...++.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22344555555433 3456655665555444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=6.3 Score=33.24 Aligned_cols=62 Identities=24% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.-+..+.+.+++++|+...+.- +.+| |..+-..++..++-.|++++|..-++-+-++.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44566777888888888877654 5556 44456677778888899999988888888888874
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.61 E-value=33 Score=29.50 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHhHHhhCCCC-ChhH---HHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHH---HHHH--HH-HH
Q 010575 325 GLVELGRRYFNIMKSRYGIEP-KIEQ---YGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWG---SLLA--AS-NI 391 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~---~l~~--~~-~~ 391 (507)
.++++|+..|+..-+-+...- +... +..+...-...+++.+|+++|++. ....+..-|. .++. .| ..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566667777766654322222 2211 222333345678899999999887 2222222222 1222 23 33
Q ss_pred cCCHHHHHHHHHHHhccCCCCC
Q 010575 392 YGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|.-.+...+++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 3677788888888888999833
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.39 E-value=68 Score=32.87 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=11.8
Q ss_pred hhcCCHHHHHHHHhhCCCCC
Q 010575 358 GRAGYLQEAEKLLRRMPFEA 377 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~ 377 (507)
...|++++|++.++++++-|
T Consensus 516 ~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHTT-HHHHHHHHHHTT-S-
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 45677777777777776555
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.30 E-value=29 Score=31.43 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhccCCCCCchHH
Q 010575 396 ELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..|.+.+.++.+.+|.-|..+.
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHH
Confidence 3577788888899988665443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.27 E-value=64 Score=32.54 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcc----C-cHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 289 HGLGREALDMFSRMER-------ARVKPNEITFIAILSACCHV----G-LVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~----g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+.+.|+.+|+.+.+ .|.+ .....+..+|.+. . +.+.|..++....+. | .|+....-..+..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHH
Confidence 3455555555555544 3321 2333344444432 2 455566666666542 2 2333222222211
Q ss_pred Hhh-cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CCch
Q 010575 357 LGR-AGYLQEAEKLLRRMPFEANAAIWGSLLAASN----IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWN 430 (507)
Q Consensus 357 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~ 430 (507)
... ..+..+|.++|..+...-....+..+...|. ...+.+.|..+++++.+.++. .+...+...+.-. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcccccc
Confidence 111 1345667777666632223333322222221 223667777777777666522 2222222222211 6666
Q ss_pred HHHHHHHHHHhCCC
Q 010575 431 ESGKIRKVMRDMGV 444 (507)
Q Consensus 431 ~A~~~~~~~~~~~~ 444 (507)
.+.-.+..+...|.
T Consensus 415 ~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 415 TALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHhhh
Confidence 66665555544444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.93 E-value=3.2 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+..++.++...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999988764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.55 E-value=7.4 Score=31.82 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCCH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 375 FEANA-AIWGSLLAASNIYG-----------DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 375 ~~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.|+- .++..+..++...+ .+++|...|+++...+|++. .|..-+.+. .+|-++..++.+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHH
Confidence 44543 45555666554433 26777888888888999964 444333333 3477777777666
Q ss_pred CCc
Q 010575 443 GVK 445 (507)
Q Consensus 443 ~~~ 445 (507)
+..
T Consensus 137 ~~~ 139 (186)
T PF06552_consen 137 GLG 139 (186)
T ss_dssp SS-
T ss_pred Hhh
Confidence 554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.47 E-value=20 Score=26.09 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
.++|..+-+-+...+.. ...+--.-+..+...|++++|..+.+....||...|.+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34454444444443311 22222233455777889999999888888888888866643 4567777777777777776
Q ss_pred CCCCCHHHHH
Q 010575 306 RVKPNEITFI 315 (507)
Q Consensus 306 g~~p~~~~~~ 315 (507)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.09 E-value=34 Score=28.56 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNKSVIT--WTTMIAGLALHGLGREALDMFSRMERAR 306 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g 306 (507)
|.......|.+++|...++....++-.. ...-...+...|+-++|..-|++..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455566667777777776666654332 3334455666777777777777766654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.02 E-value=9.8 Score=34.38 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-P---FEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
|.-=.+-|.+..++..|...|.+- . ..| +.+.|+.=..+....|++..|+.-..+++.++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334455677788888888888765 1 122 4566777777778889999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHH
Q 010575 424 AILGRWNESGKIRKVMR 440 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~ 440 (507)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999888888887764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 8e-14
Identities = 25/202 (12%), Positives = 65/202 (32%), Gaps = 9/202 (4%)
Query: 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236
+ T + ++ A L + P E + L ++++ +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLALH 289
Q L+ A + ++ A + + ++ + ++ G A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVG-LVELGRRYFNIMKSRYGIEPKIE 348
G +E + + ++ A + P+ +++ A L R M + G++ +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQAL 237
Query: 349 QYGCMIDLLGRAGYLQEAEKLL 370
++ RA L+ K+
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 9e-10
Identities = 19/170 (11%), Positives = 57/170 (33%), Gaps = 10/170 (5%)
Query: 68 QASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127
+ + P +L+ ++++ + Q L + A + +
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 128 YDARKVFDEL-----SLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK----NVISW 178
A + ++ + ++N ++ G+A+ G + ++ + +++S+
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 179 TTLIAGYAQMDQPNEAI-TLFRRMQVENVKPDEIAMLAALSACAQLGAVE 227
+ + DQ I +M E +K + LS + ++
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 1e-06
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 147 WNTMVAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFR 199
L A L + + + + ++ G+A+ E + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 200 RMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258
++ + PD ++ AAL + E + Q GL L+ ++
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 259 GKIGKALQVFENMK 272
+ +V
Sbjct: 250 TVLKAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 4e-04
Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 8/149 (5%)
Query: 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIF-------THKSKPDVYLYNTTIKALCQ 53
L L F C A+ + + + +YN + +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 54 TDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLS-TIELGREIHCQTVGTGLDSDVH 112
V + ++ + L PD S+ L+ + + Q GL
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 113 VVAALIQMYASCKCIYDARKVFDELSLRV 141
A L+ + KV SL
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 8e-12
Identities = 79/593 (13%), Positives = 170/593 (28%), Gaps = 180/593 (30%)
Query: 6 LDQNNHLLSRFIDSCSSLGFSDYAY---SIFTHKSKP--DVYLYNTTIKALCQTDN---- 56
L + ++ +F++ +Y + I T + +P +Y L DN
Sbjct: 72 LSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFA 127
Query: 57 PLNAVI--LYNKIQASA--LRPDNYSFPFVL-------KAVVKLSTI-------ELGREI 98
N Y K++ + LRP ++ K V L ++ +I
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 99 HCQTVGTGLDSDVHVVAALIQMYASCKCIYDAR------------KVFDELS-------- 138
+ +S V+ L ++ + +R + EL
Sbjct: 185 FWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 139 ------LR-VWNVAVWN-------TMV-AGYAKVGDLNNARALFELMTEKNVISWT---- 179
L V N WN ++ + +V D +A + + + ++ T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 180 -TLIAGYAQM---DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH-- 233
+L+ Y D P E +T P ++++A + + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT---------TNPRRLSIIAES----------IRDGLATW 344
Query: 234 NYIEQYG---LNTIV-----PLNNALI-DMYAKSGKIGKALQVF-ENMKNKS---VITWT 280
+ + L TI+ L A M+ L VF + + + W
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSAHIPTILLSLIWF 397
Query: 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340
+I + + +++ LVE ++ S
Sbjct: 398 DVI---------------------------KSDVMVVVNKLHKYSLVE--KQPKE---ST 425
Query: 341 YGIEPKIEQYGCMIDLLGRAGYLQEAEK-LLRRMPFEANAAIWGSLLAASNIYGDVELGE 399
I ++L + + ++ + + Y +G
Sbjct: 426 ISI------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG- 478
Query: 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRV 459
HL +E + + ++ R+ E KIR + ++ K
Sbjct: 479 ---HHLKNIE--HPERMTLFRMVFLDF-RFLEQ-KIRHDSTAWNASG-SILNTLQQLKFY 530
Query: 460 HEFVAGDTSHPDFDR----LYQILCKINGQMKFAEH-------LQNEFSGVLE 501
++ + P ++R + L KI + +++ L E + E
Sbjct: 531 KPYIC--DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 8e-09
Identities = 86/568 (15%), Positives = 155/568 (27%), Gaps = 172/568 (30%)
Query: 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKAL-----CQTDNPLNAVILYN 65
F+D+ D SI + + + + + V
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---Q 80
Query: 66 KIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK 125
K LR NY F L I + + + MY +
Sbjct: 81 KFVEEVLRI-NYKF--------------LMSPIKTEQRQPSMMTR---------MYIEQR 116
Query: 126 -CIYDARKVFDELSL-RVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI------- 176
+Y+ +VF + ++ R+ L AL EL KNV+
Sbjct: 117 DRLYNDNQVFAKYNVSRL-------------QPYLKLRQ--ALLELRPAKNVLIDGVLGS 161
Query: 177 --SWTTLIAGYAQMDQPNEAITLFRRMQV------ENVKPDEI-AMLAALSACAQLGA-- 225
+W + + + ++ P+ + ML L Q+
Sbjct: 162 GKTW--VALDVCL----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNW 213
Query: 226 VELGEWIHNYI-----EQYGLNTIV---PLNNALI---DMYAKSGKIGKALQVFENMKNK 274
+ N Q L ++ P N L+ ++ KA F N+ K
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAF-NLSCK 267
Query: 275 SVITWTTMIAGLA----------------LHGLG-REALDMFSRMERARVK--PNEIT-- 313
++ TT + L E + + R + P E+
Sbjct: 268 ILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 314 ---FIAILSACCHVGLVELGR-RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 369
++I++ GL ++ N K IE + L+ AE
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-------------LEPAE-- 370
Query: 370 LRRM-----PFEANAAI--------WGSLLAASNIYGDVE--LGECALQHLIKLEPHNSG 414
R+M F +A I W + I DV + + L++ +P
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDV-----IKSDVMVVVNKLHKYSLVEKQP-KES 424
Query: 415 NYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDR 474
+I S + + + + + D Y + + D P +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVD---------HY-----NIPKTFDSDDLIPPYLD 470
Query: 475 LYQILCKINGQMKFAEHLQ--NEFSGVL 500
Y I +K EH + F V
Sbjct: 471 QY-FYSHIGHHLKNIEHPERMTLFRMVF 497
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 24/229 (10%), Positives = 66/229 (28%), Gaps = 18/229 (7%)
Query: 107 LDSDVHVVAALIQMYASCKCIYDARKVFDEL--SLRVWNVAVWNTMVAGYAKVGDLNNAR 164
L+ ++A M + +A +++ +L N+ ++
Sbjct: 60 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 165 ALFELMTEKN----VISWTTLIAGYAQMDQPNEAITLFRR-MQVENVKPDEIAMLAALSA 219
+++ + + + + + + +F++ + + A +
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179
Query: 220 CAQLGAVELG-EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVIT 278
+ + +++YG A ID + + +FE + +
Sbjct: 180 YCS-KDKSVAFKIFELGLKKYGDIP--EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236
Query: 279 -------WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320
W +A + G L + R A + E A+L
Sbjct: 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVD 285
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 16/205 (7%)
Query: 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLALHGLGR 293
L + L A D K K ++ + + + + +
Sbjct: 92 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151
Query: 294 EALDMFSR-MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 352
+F + E AR + + A++ C + + F + +YG P+
Sbjct: 152 SGRMIFKKAREDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEY--VLA 208
Query: 353 MIDLLGRAGYLQEAEKLLRR------MPFEANAAIWGSLLAASNIYGDVELGECALQHLI 406
ID L L R +P E + IW LA + GD+ +
Sbjct: 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268
Query: 407 KLEPHNSGN--YAILSNIYAILGRW 429
A+L + Y + +
Sbjct: 269 TAFREEYEGKETALLVDRYKFMDLY 293
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 21/249 (8%)
Query: 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN--N 249
+ I +R++ + P+ A L + G +++ ++ L
Sbjct: 16 QQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGV----VLDEIKPSSAPELQAVR 69
Query: 250 ALIDMYAKSGKIGKALQVFENMKNKSVI---TWTTMIAGLALHGLGR--EALDMFSRMER 304
+ A + + + ++SV T ++A AL + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 305 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ 364
+ + ++L R+ M+ + + + L LQ
Sbjct: 130 LECMAMTV------QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 365 EAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422
+A + + M + A G E E LQ + + + L +
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 423 YAILGRWNE 431
LG+ E
Sbjct: 244 SQHLGKPPE 252
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.2 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.0 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.95 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.9 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.89 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.89 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.89 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.87 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.73 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.73 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.51 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.41 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.37 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.36 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.24 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.1 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.82 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.79 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.51 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.33 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.25 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.16 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.11 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.04 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.86 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.64 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.33 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.18 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.0 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.79 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.26 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.67 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.43 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.02 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.7 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.62 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.08 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.96 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.11 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.03 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.1 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.27 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.62 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.33 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.89 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.67 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.62 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.84 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=344.89 Aligned_cols=428 Identities=11% Similarity=0.027 Sum_probs=382.3
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKA 85 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 85 (507)
+++..|+.++..|.+.|++++|..+|+++.. |+..++..++.++.+.|++++|..+|+.+.. .+++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 6778899999999999999999999999864 7888999999999999999999999999875 36888999999999
Q ss_pred HHccCCcHHHHHHHHHHHHc---------------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC-hhhHHH
Q 010575 86 VVKLSTIELGREIHCQTVGT---------------GLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWN-VAVWNT 149 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 149 (507)
|.+.|++++|.++|+++... +..++..+++.++.+|.+.|++++|.++|+++....|+ ...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999853221 12335789999999999999999999999999887663 333333
Q ss_pred H--------------------------------------HHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC
Q 010575 150 M--------------------------------------VAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 150 l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 189 (507)
+ +..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 3 4556678999999999999987 78999999999999999
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999865 3467789999999999999999999999999765 6678899999999999999999999999
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 270 NMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 270 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 8764 467899999999999999999999999999874 447789999999999999999999999999874 3457
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999999999999988 44777 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.++.+|.+.|++++|.++++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=318.10 Aligned_cols=416 Identities=8% Similarity=-0.007 Sum_probs=366.6
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCC--CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc------------
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS--KPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS------------ 70 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------ 70 (507)
+..|+..++..++.+|.+.|++++|..+|+.+. .++..+|+.++.+|.+.|++++|+.+|+++...
T Consensus 112 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 112 DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 346888999999999999999999999999984 588899999999999999999999999953221
Q ss_pred ---CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH------------------------------
Q 010575 71 ---ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL------------------------------ 117 (507)
Q Consensus 71 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------ 117 (507)
+.+++..+|..++.+|.+.|++++|.++|+++.+.++. +...+..+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 22335788999999999999999999999999987643 33333332
Q ss_pred --------HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 118 --------IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYA 186 (507)
Q Consensus 118 --------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 186 (507)
+..|.+.|++++|.++|+++....++..+|+.++..|.+.|++++|.++|+++.+ .+..+|+.++.++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 5566678999999999999988655999999999999999999999999999873 46788999999999
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998654 5578899999999999999999999999999865 5568899999999999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh--
Q 010575 267 VFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-- 341 (507)
Q Consensus 267 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 341 (507)
+|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9998764 467899999999999999999999999999863 4478999999999999999999999999998643
Q ss_pred -CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 342 -GIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 342 -~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+|..++.+|...|++++|.+.++++++++|+++.++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 55677 789999999999999999999999998 3334 788999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010575 417 AILSNIYA 424 (507)
Q Consensus 417 ~~l~~~~~ 424 (507)
..++.+|.
T Consensus 588 ~~l~~~~~ 595 (597)
T 2xpi_A 588 DLLKRALE 595 (597)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-30 Score=242.10 Aligned_cols=373 Identities=11% Similarity=0.075 Sum_probs=302.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
...+.+.|++++|...++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566778888888888877764 3543 445555566677888888888888877765 3367778888888888888
Q ss_pred hHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 127 IYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 127 ~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
+++|...|+++....| +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888877666 455688888888888888888888877764 3 34567778888888899999999988888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHH
Q 010575 203 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITW 279 (507)
Q Consensus 203 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 279 (507)
+.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 753 3356778888888889999999999998888875 45577788888899999999999999887654 356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 899999999999999999999998863 335678889999999999999999999999874 45678899999999999
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 360 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
.|++++|.+.++++ ...| +..++..++..+.+.|++++|...+++++++.|+++.+|..++.++.+.|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 4445 577899999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-29 Score=239.96 Aligned_cols=373 Identities=13% Similarity=0.076 Sum_probs=325.0
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 160 (507)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++......| +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456678899999999999999987643 566777888899999999999999999888766 778999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 161 NNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 161 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999864 3 45689999999999999999999999998864 2344566778888999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 55678899999999999999999999999875 356789999999999999999999999998753 2357889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHc
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 392 (507)
..+..++...|++++|+..|+++.+. .+.++.+|..+...+.+.|++++|.+.|+++ ..+.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 3445788999999999999999999999988 2345788999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCh
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDF 472 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (507)
|++++|...++++++..|+++.++..++.+|.+.|++++|++.++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999973 25666
Q ss_pred HHHHHHHHHHHHHH
Q 010575 473 DRLYQILCKINGQM 486 (507)
Q Consensus 473 ~~~~~~l~~~~~~~ 486 (507)
...+..+..+...+
T Consensus 373 ~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 373 ADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHc
Confidence 67777777665544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=235.98 Aligned_cols=187 Identities=11% Similarity=0.114 Sum_probs=156.4
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC---------cHHHHHHHHHHHHcCCCCcHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLST---------IELGREIHCQTVGTGLDSDVH 112 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 112 (507)
..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788889999999999999999999999999999999999998887654 577888999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
+|++||.+|++.|++++|.++|++|...+ ..||..+|+.+|.+|++.|+++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-----------------------------~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG-----------------------------IQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------------------CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------------CCCccceehHHHHHHHHCCCHH
Confidence 99999999999998888888888887651 2467777777888888888888
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
+|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|+.
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888877765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=233.62 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchh
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA---------VELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 246 (507)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999875 7899999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=225.57 Aligned_cols=392 Identities=10% Similarity=-0.033 Sum_probs=291.3
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
.|......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|...++.+++.++. +..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHH
Confidence 34445556666666666666666666643 56666666666666666666666666666665432 4556666666666
Q ss_pred hcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH------------------------------------
Q 010575 123 SCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA------------------------------------ 165 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~------------------------------------ 165 (507)
..|++++|...|+++....| +......++..+........+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666666655543 22333333332222111111111
Q ss_pred --HHHhcCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHhH-----CCC--------CCCHHHHHHHH
Q 010575 166 --LFELMTE---------K-NVISWTTLIAGYAQ---MDQPNEAITLFRRMQV-----ENV--------KPDEIAMLAAL 217 (507)
Q Consensus 166 --~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll 217 (507)
.+..... | +...+......+.. .|++++|...|+++.+ ... +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1111110 1 24455555555555 8999999999999987 311 22345677888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH
Q 010575 218 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE 294 (507)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 294 (507)
..+...|+++.|...++.+.+.... ...+..+..+|...|++++|...|+.+.+ .+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999999988644 88888999999999999999999998765 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-
Q 010575 295 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 373 (507)
Q Consensus 295 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 373 (507)
|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999864 335678888999999999999999999999874 3446778889999999999999999999987
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 374 ---PFEAN----AAIWGSLLAASNI---YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 374 ---~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22232 4488999999999 999999999999999999999999999999999999999999999999743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=218.05 Aligned_cols=404 Identities=9% Similarity=-0.062 Sum_probs=324.0
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
...+..+...+.+.|++++|...|+++.. |+...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45677788899999999999999998753 888999999999999999999999999999854 334567888999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--------------------------------
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD-------------------------------- 135 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------- 135 (507)
..|++++|...|+.+.+.++. +......++..+........+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999988743 33333444444333222222222111
Q ss_pred ------hcccC-------CC-ChhhHHHHHHHHHh---cCCHHHHHHHHHhcCC-----C------------ChhHHHHH
Q 010575 136 ------ELSLR-------VW-NVAVWNTMVAGYAK---VGDLNNARALFELMTE-----K------------NVISWTTL 181 (507)
Q Consensus 136 ------~~~~~-------~p-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~------------~~~~~~~l 181 (507)
..... .| +...+......+.. .|++++|+..|+++.+ . +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11000 01 24445555555554 8999999999988765 1 34578889
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...+...|++++|...|+++.+.+ |+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999998865 337888899999999999999999999998875 55677888999999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998764 456789999999999999999999999998753 3356788889999999999999999999998
Q ss_pred HhhCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 339 SRYGIEPK----IEQYGCMIDLLGR---AGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 339 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
....-.++ ...+..+...+.. .|++++|...++++ ... .+..++..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 65322233 3488899999999 99999999999987 323 367788999999999999999999999999999
Q ss_pred CCCCchHHHH
Q 010575 410 PHNSGNYAIL 419 (507)
Q Consensus 410 p~~~~~~~~l 419 (507)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988777766
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=208.46 Aligned_cols=321 Identities=13% Similarity=0.034 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 111 VHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYA 186 (507)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 186 (507)
...+..+...|.+.|++++|..+|+++....| +..+|..+..++...|++++|+..|+++.+ .+..++..++..|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444444445555555555555554444333 344444445555555555555555544432 23445555666666
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCH----HHHHH------------HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDE----IAMLA------------ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
+.|++++|.+.|+++.+.+ |+. ..+.. +...+...|+++.|...++.+.+.. +.+..++..
T Consensus 106 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666666665532 222 22222 2445778888899998888888765 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH---------
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAI--------- 317 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l--------- 317 (507)
++.+|.+.|++++|...|+.+.+ .+..+|..++..|...|++++|+..|+++... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999988764 46788999999999999999999999998875 34 33444444
Q ss_pred ---HHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 010575 318 ---LSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 387 (507)
Q Consensus 318 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 387 (507)
...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|...++++ ...| +...|..++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78889999999999999999864 344 457888999999999999999999987 3344 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH------------HHHcC-----CchHHHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI------------YAILG-----RWNESGKIRKVM 439 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 439 (507)
+|...|++++|...+++++++.|+++.++..++.+ |...| +.+++.+.+++.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999844 44445 566777777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=214.73 Aligned_cols=421 Identities=11% Similarity=-0.002 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
..+..+...+.+.|++++|.+.|++... .+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 3445555566666666666666655432 344556666666666666666666666665532 223445555556666
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCCHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A 163 (507)
..|++++|...|+ .....+.+. ...+..+...+....|...++++....| ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6666666666664 222211111 1123334444445556666666554422 111223334445555566666
Q ss_pred HHHHHhcCCCChh---HHHHHHHHHHhC--------CChhHHHHHHHHHhHCCCCCC-------HHHHHHHHHHHhccCC
Q 010575 164 RALFELMTEKNVI---SWTTLIAGYAQM--------DQPNEAITLFRRMQVENVKPD-------EIAMLAALSACAQLGA 225 (507)
Q Consensus 164 ~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~-------~~~~~~ll~~~~~~~~ 225 (507)
...+......+.. ....+...+... |++++|..+|+++.+... .+ ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhccc
Confidence 5555555543332 333333333222 478899999999887542 22 2346666777888999
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
++.|...++.+.+.. |+...+..+...|...|++++|...|+.+.+ .+..+|..+...+...|++++|...|+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4477888899999999999999999998764 45678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C----
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P---- 374 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---- 374 (507)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...|+++ +
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 234578888999999999999999999999874 3445778889999999999999999999886 1
Q ss_pred CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 375 FEANAAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.......+......+... |++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111233345556677777 999999999999999999999999999999999999999999999987543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-23 Score=203.47 Aligned_cols=308 Identities=12% Similarity=0.063 Sum_probs=256.3
Q ss_pred HHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 130 ARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 130 A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
+...+.++....| +...+..+...+.+.|++++|+.+|+++.+ .+..+|..++.++...|++++|...|+++.+.+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444445555 778899999999999999999999998874 467899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHh
Q 010575 206 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNAL------------IDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 206 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~ 270 (507)
+.+...+..+..++...|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|...|+.
T Consensus 91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3467888999999999999999999999999765 3333 455544 4458999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 271 MKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 271 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
+.+ .+...+..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++... .+.+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 764 467889999999999999999999999998753 447789999999999999999999999999864 23344
Q ss_pred hHHHHH------------HHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 348 EQYGCM------------IDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 348 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..+..+ +..+.+.|++++|...|+++ ...|+ ...+..++..+.+.|++++|+..++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445444 78899999999999999988 33454 4478888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999753
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-21 Score=181.33 Aligned_cols=326 Identities=13% Similarity=0.035 Sum_probs=236.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGY 185 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 185 (507)
+...+..+...+...|++++|...|+++....| +...+..+...+...|++++|+..|+++.+ .+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677788888888999999999988877766 567777888888888888888888877763 3556777788888
Q ss_pred HhCCChhHHHHHHHHHhHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...|++++|...|++..+.. | +...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 88888888888888877643 4 222222221110 0 01122345667777778
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887777777653 355677777788888888888888888877653 3466777778888888888888888888877
Q ss_pred HhhCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHH
Q 010575 339 SRYGIEPKIEQYG------------CMIDLLGRAGYLQEAEKLLRRM-PFEAN-A----AIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 339 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~A~~ 400 (507)
+. .+.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 122233222 2366688889999999998887 22333 2 234557778889999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILC 480 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (507)
.++++++..|+++.++..++.+|.+.|++++|.+.+++..+ ..|++..+...+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999863 3566777777887
Q ss_pred HHHHHHHhc
Q 010575 481 KINGQMKFA 489 (507)
Q Consensus 481 ~~~~~~~~~ 489 (507)
++...++++
T Consensus 348 ~~~~~~~~~ 356 (359)
T 3ieg_A 348 KAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-21 Score=179.53 Aligned_cols=324 Identities=10% Similarity=-0.037 Sum_probs=240.1
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
|+..+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++....| +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456778888999999999999999999998644 678899999999999999999999999988777 67889999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHH
Q 010575 154 YAKVGDLNNARALFELMTEKNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 227 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 227 (507)
+...|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999876333 23333321100 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 228 LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 228 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
+|...++.+.+.. +.+...+..+..+|...|++++|...++.+.+ .+..+|..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666655543 34455566666666667777777766666544 3456667777777777777777777777766
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHhhcCCHHHHHH
Q 010575 305 ARVKPNEITFI------------AILSACCHVGLVELGRRYFNIMKSRYGIEPKI----EQYGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 305 ~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 368 (507)
.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|..
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 12223222 23566888999999999999998752 2223 235567888999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 369 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 369 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.++++ ...| +..+|..+...+...|++++|...++++++++|+++.++..+..+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 3334 7789999999999999999999999999999999999888888776554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=195.02 Aligned_cols=393 Identities=10% Similarity=-0.031 Sum_probs=296.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (507)
...|..+...+.+.|++++|+..|+++.+.. +.++..+..+..++...|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567888899999999999999999999854 346778888999999999999999999999998644 77888999999
Q ss_pred HHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCChhHH
Q 010575 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNV------ISWTTLIAGYAQMDQPNEA 194 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a 194 (507)
+...|++++|...|+.+ ...|+ .....+..+...+....|...++.+...++ ......+..+....+.+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999744 33332 222234455556667888998888865211 1223445556667777766
Q ss_pred HHHHHHHhHCCCCCCHHHHH-HHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcC
Q 010575 195 ITLFRRMQVENVKPDEIAML-AALSACAQ--------LGAVELGEWIHNYIEQYGLNTI------VPLNNALIDMYAKSG 259 (507)
Q Consensus 195 ~~~~~~m~~~~~~~~~~~~~-~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 259 (507)
...+..... ..+....+. .+...+.. .|++++|..+++.+.+...... ..++..+...+...|
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 655544433 223322222 22222222 2478899999999887652211 235667778889999
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 010575 260 KIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 337 (507)
Q Consensus 260 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 337 (507)
++++|...|+.+.+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998875 567788889999999999999999999998863 346788999999999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 338 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++...
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 874 2345678899999999999999999999988 223 356788999999999999999999999999888776554
Q ss_pred ------HHHHHHHHHHc----------CCchHHHHHHHHHHhCC
Q 010575 416 ------YAILSNIYAIL----------GRWNESGKIRKVMRDMG 443 (507)
Q Consensus 416 ------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 443 (507)
+..++.++.+. |++++|+..+++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 44556888888 99999999999997543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-20 Score=169.05 Aligned_cols=284 Identities=11% Similarity=0.077 Sum_probs=180.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGY 185 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 185 (507)
+...+..+...+...|++++|.++|+++....| +...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 344445555555555666666666665555444 333444444444444555555554444432 2345555666666
Q ss_pred HhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 186 AQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 186 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
...| ++++|.+.|++..... +.+...+ ..+..+|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-----------------------------------~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAW-----------------------------------IAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHH-----------------------------------HHHHHHHHHHTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHH-----------------------------------HHHHHHHHHccCHHHH
Confidence 6666 6666666666655432 1223334 4444445555555555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 265 LQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 265 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 555544432 233455556666777777777777777776652 3355677777777778888888888887776532
Q ss_pred C-------CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 342 G-------IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 342 ~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
. .+.....+..+...|...|++++|...++++ .. ..+...+..+...+...|++++|...+++++++.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 1334567888888888899999999888877 22 2356788889999999999999999999999999999
Q ss_pred CchHHHHHHHH-HHcCCch
Q 010575 413 SGNYAILSNIY-AILGRWN 430 (507)
Q Consensus 413 ~~~~~~l~~~~-~~~g~~~ 430 (507)
+.++..++.++ ...|+.+
T Consensus 304 ~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHTTTTC--
T ss_pred hHHHHHHHHHHHHHhCchh
Confidence 99999999888 4555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-18 Score=166.51 Aligned_cols=382 Identities=11% Similarity=-0.038 Sum_probs=310.5
Q ss_pred CCCcccHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHcCCCC
Q 010575 38 KPDVYLYNTTIKALCQ----TDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK----LSTIELGREIHCQTVGTGLDS 109 (507)
Q Consensus 38 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 109 (507)
..+..++..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|...|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577788888888887 899999999999998854 56677888888887 899999999999998876
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHHhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHH
Q 010575 110 DVHVVAALIQMYAS----CKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTT 180 (507)
Q Consensus 110 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~ 180 (507)
+...+..|...|.. .+++++|...|++....+ +...+..+...|.. .+++++|++.|++..+ .++.++..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777788888888 789999999999987653 56778888888887 7899999999988764 56788888
Q ss_pred HHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 181 LIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 181 li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
+...|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|..+++...+.+ +...+..+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999988 899999999999998865 45667777777775 789999999999988765 345666777
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 253 DMYAK----SGKIGKALQVFENMKN-KSVITWTTMIAGLALH-----GLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 253 ~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..|.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88887 8999999999998776 4667888888888887 89999999999998865 4566777777777
Q ss_pred ccC---cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 010575 323 HVG---LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI---- 391 (507)
Q Consensus 323 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 391 (507)
..| ++++|++.|++..+. .++..+..+...|.. .+++++|..+|++.-...++..+..+...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 656 889999999999874 467788889999988 89999999999988333467888889999988
Q ss_pred cCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHcCCch--HHHHHHHHH
Q 010575 392 YGDVELGECALQHLIKLEPH---NSGNYAILSNIYAILGRWN--ESGKIRKVM 439 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 439 (507)
.++.++|...|+++.+.+|+ ++.+...++.++.+..... .|.+++++.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 89999999999999998854 6777777776665432221 244555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=165.65 Aligned_cols=263 Identities=11% Similarity=0.026 Sum_probs=222.7
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
.++..+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355566777788888888888888888887754 2344455667777888899999999998888765 45677888889
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 010575 253 DMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 328 (507)
Q Consensus 253 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 328 (507)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998765 356789999999999999999999999998863 234567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C----------CCCCHHHHHHHHHHHHHcCCHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P----------FEANAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----------~~~~~~~~~~l~~~~~~~g~~~~ 397 (507)
+|...++++.+ ..+.+...+..+...+...|++++|...++++ . ......++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 33456788999999999999999999999877 1 13346789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|...++++++..|+++.++..++.+|.+.|++++|.+.+++..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=174.31 Aligned_cols=299 Identities=14% Similarity=0.018 Sum_probs=186.1
Q ss_pred HHhcCChHHHHH-HHHhcccCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010575 121 YASCKCIYDARK-VFDELSLRVW-----NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQP 191 (507)
Q Consensus 121 ~~~~g~~~~A~~-~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 191 (507)
+...|++++|.. .|++.....| +...+..+...+.+.|++++|+..|+++.+ .+..+|..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334456666666 5655444322 233444555555555555555555555442 2334455555555555555
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
++|.+.|+++.+.+ +.+..++..+...+...|++++|...++.+.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 55555555554432 223444444444555555555555555544443211 11111000000 00 0
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHH
Q 010575 272 KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 350 (507)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (507)
.. ....+..+.. +...|++++|...|+++.+..... +..++..+...+...|++++|+..++++... .+.+...+
T Consensus 179 ~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 254 (368)
T 1fch_A 179 AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 254 (368)
T ss_dssp --------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence 00 0001112333 338899999999999998753221 4788899999999999999999999999874 24457889
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------CchHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-----------SGNYA 417 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~ 417 (507)
..+...+...|++++|...|+++ ... .+...+..+..++...|++++|...+++++++.|++ ..+|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999987 333 467789999999999999999999999999988887 78999
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++.+|.+.|++++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999988643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-17 Score=162.51 Aligned_cols=363 Identities=10% Similarity=-0.032 Sum_probs=304.4
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 010575 60 AVILYNKIQASALRPDNYSFPFVLKAVVK----LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS----CKCIYDAR 131 (507)
Q Consensus 60 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 131 (507)
++..++...+. .++..+..+...+.. .+++++|...|+...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556655553 366777777777777 899999999999998875 56788889999998 89999999
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHh
Q 010575 132 KVFDELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQ 202 (507)
Q Consensus 132 ~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 202 (507)
..|++..+.+ +...+..+...|.. .+++++|+..|++..+ .++.++..+...|.. .+++++|++.|++..
T Consensus 100 ~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 100 IWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999987654 66777888888888 8899999999998775 467788889998987 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-
Q 010575 203 VENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN- 273 (507)
Q Consensus 203 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~- 273 (507)
+.| +...+..+...|.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|+...+
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 865 56777788888887 899999999999998875 45667778888886 8899999999998765
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhhCCC
Q 010575 274 KSVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV-----GLVELGRRYFNIMKSRYGIE 344 (507)
Q Consensus 274 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~ 344 (507)
.+...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|++..+.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---- 325 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---- 325 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----
Confidence 466778888888888 899999999999998764 556777777777776 8999999999999874
Q ss_pred CChhHHHHHHHHHhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAG---YLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+...+..+...|...| ++++|.++|++.-...++..+..+...|.. .+++++|...++++.+.+ ++.++.
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 35667788888888766 889999999988333678899999999988 899999999999998764 578999
Q ss_pred HHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 418 ILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 418 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
.|+.+|.+ .+++++|.++|++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999 8999999999999987663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=165.10 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=69.3
Q ss_pred ccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHH
Q 010575 22 SLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQ 101 (507)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 101 (507)
+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6678999999999986664 8999999999999999999999652 5777889999999999999999998777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 010575 102 TVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL 181 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 181 (507)
..+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+ ..|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 7664 3456778889999999999988887775 356668888888888888888888888876 367778
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 88888888888888887777 2567777777777777777777433322 111222222344445444555
Q ss_pred HHHHHHHHhc
Q 010575 262 GKALQVFENM 271 (507)
Q Consensus 262 ~~A~~~~~~~ 271 (507)
++|..+++..
T Consensus 224 eEai~lLe~a 233 (449)
T 1b89_A 224 EELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-17 Score=161.87 Aligned_cols=408 Identities=10% Similarity=0.026 Sum_probs=279.7
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+-|...|..++.. .+.|++++|+.+|+.+.. | +...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4466788888874 778889999999988654 3 5567888888888889999999999988874 46766666666
Q ss_pred HHH-HccCCcHHHHH----HHHHHHHc-CCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHhcccCCCCh---
Q 010575 84 KAV-VKLSTIELGRE----IHCQTVGT-GLDS-DVHVVAALIQMYAS---------CKCIYDARKVFDELSLRVWNV--- 144 (507)
Q Consensus 84 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~--- 144 (507)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... .|..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 433 34567766654 66666543 4433 45677777766554 6788888888888877 3432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH------hHCC---CCCCH-----
Q 010575 145 AVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM------QVEN---VKPDE----- 210 (507)
Q Consensus 145 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~~~~----- 210 (507)
..|..........|. ..+..++. ...+++..|..+++.. .+.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 223222221111110 11111111 0223455566555542 2211 23331
Q ss_pred ---HHHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHH
Q 010575 211 ---IAMLAALSACAQ----LGAV----ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK-------SGKIG-------KAL 265 (507)
Q Consensus 211 ---~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~ 265 (507)
..|...+..... .++. +.+..++++++... +.+...|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 233333332221 1222 36677888888764 5567788888888775 68876 899
Q ss_pred HHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 266 QVFENMKN---K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-E-ITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 266 ~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998764 3 5678999999999999999999999999985 454 3 5788888888889999999999999985
Q ss_pred hhCCCC-ChhHHHHHHHH-HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-
Q 010575 340 RYGIEP-KIEQYGCMIDL-LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG- 414 (507)
Q Consensus 340 ~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 414 (507)
. +| +...|...+.. +...|++++|..+|++. ...| ++..|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 3 33 33333332222 34689999999999987 3334 6788999999999999999999999999998877665
Q ss_pred ---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 415 ---NYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 415 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+|...+....+.|+.+.+.++.+++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999888643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-17 Score=165.92 Aligned_cols=380 Identities=12% Similarity=0.094 Sum_probs=271.1
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHhccCCC-C-----CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 9 NNHLLSRFIDSCSSLGFSDYAYSIFTHKSK-P-----DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
||.-....+.+|...|.+.+|.++++++.- | +....+.++....+. +..+..+..++.-. .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 444445677777777888888888877552 2 224455566666655 44555555544432 113446
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 162 (507)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.+++. +..+|..+..++...|++++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHH
Confidence 677778888888888887751 12222233322 6778888888888664 56788888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 163 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888765 567778888888888899988888888776654 33333335777888888887544332 1 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888888889999999888875 47888888888889999998888866 35578888888888
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHH--HcCCHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASN--IYGDVELG 398 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~--~~g~~~~A 398 (507)
..|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..| ....|.-+...+. +.++..++
T Consensus 1262 e~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887765532 346667778899999999999999999776 4444 3345655666554 44567777
Q ss_pred HHHHHHHhccCC-----CCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 399 ECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 399 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
.+.|..-..+.| ++...|..++..|.+.|+++.|...+
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777666 56778999999999999999988543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-17 Score=161.07 Aligned_cols=382 Identities=11% Similarity=0.049 Sum_probs=260.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHH-HcCCCchHHHH----HHHHHHHc-CCCCC-c
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKAL-CQTDNPLNAVI----LYNKIQAS-ALRPD-N 76 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-~~~p~-~ 76 (507)
.|.+...|..++..+.+.|++++|+.+|++... |+...|...+... ...|+.+.|.+ +|+..... |..|+ .
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 356777899999999999999999999999765 7777788777533 45688888776 77776653 55443 4
Q ss_pred ccHHHHHHHHHc---------cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhH
Q 010575 77 YSFPFVLKAVVK---------LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVW 147 (507)
Q Consensus 77 ~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 147 (507)
..|...+....+ .|+++.|..+|+..++.........|..........|. ..+..++..
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~----------- 189 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED----------- 189 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------
Confidence 556666665544 68899999999999883111112344333322111111 111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-------cC------CCC--------hhHHHHHHHHHHhC----CCh----hHHHHHH
Q 010575 148 NTMVAGYAKVGDLNNARALFEL-------MT------EKN--------VISWTTLIAGYAQM----DQP----NEAITLF 198 (507)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~ 198 (507)
+.+++..|..++.. +. .|+ ...|...+...... ++. +++..+|
T Consensus 190 --------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 190 --------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp --------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 11233334333332 11 111 23444444333222 222 3677788
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQ-------LGAVE-------LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
++.+... +.+...|...+..+.+ .|+++ .|..+++...+.-.+.+...+..++..+.+.|++++|
T Consensus 262 ~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 8887753 3456677777776664 68876 8888888888633355688888899999999999999
Q ss_pred HHHHHhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHH
Q 010575 265 LQVFENMKN--K-SV-ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 265 ~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~ 339 (507)
..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|++++|..+|+...+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 999998765 3 33 478888888889999999999999998762 2233333332222 3358999999999999987
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.. +.++..|..++..+.+.|+.++|..+|+++ +..| ....|...+......|+.+.+..+.+++.+..|+
T Consensus 420 ~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 420 KY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 53 346788999999999999999999999987 2233 2458888888888999999999999999998885
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=163.27 Aligned_cols=214 Identities=10% Similarity=-0.009 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH--------------
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA-------------- 287 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~-------------- 287 (507)
+++.|...+++..... +.+..++..+...|...|++++|...|++..+ .+..++..+...|.
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444433 23334444445555555555555555544432 12233333333322
Q ss_pred -----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh----HHHHHHH-HH
Q 010575 288 -----LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMID-LL 357 (507)
Q Consensus 288 -----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~ 357 (507)
..+..++|...+++..+.. +.+..++..+...+...|++++|+..|+++.+. .|+.. .+..+.. .+
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHH
Confidence 1234577888888877653 224456778888999999999999999998864 33322 2333332 23
Q ss_pred hhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
...|++++|+..|++. .+.|+...... ....+..++++.++.+|+++.+|..|+.+|...|++++|++.|
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999999887 55665443322 2345567788889999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeE
Q 010575 437 KVMRDMGVKKMPGCSY 452 (507)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (507)
++..+.+.......+|
T Consensus 454 ~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 454 ERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------
T ss_pred HHHHhcCCCCCcHhhc
Confidence 9998766654444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-16 Score=160.62 Aligned_cols=352 Identities=14% Similarity=0.095 Sum_probs=280.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASAL--RPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
.--...+++|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +.....++....... + ...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHH
Confidence 3445677888999999999999999884321 11234455566666666 556666666555321 1 344778
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999999999752 2333333333 7789999999999874 46789999999999999999999996
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 010575 200 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW 279 (507)
Q Consensus 200 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 279 (507)
+. .|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 467788899999999999999999999888765 33333445999999999998655443 45677778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999984 478999999999999999999998773 56899999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc--CCchHHHHHHH
Q 010575 360 AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL--GRWNESGKIRK 437 (507)
Q Consensus 360 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 437 (507)
.|++..|....... ..++..+..++..|.+.|.+++|+.+++.+++++|.+...|..|+.+|.+- ++..|+.++|.
T Consensus 1263 ~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987754 456677889999999999999999999999999999999998888888764 56667777665
Q ss_pred H
Q 010575 438 V 438 (507)
Q Consensus 438 ~ 438 (507)
.
T Consensus 1341 ~ 1341 (1630)
T 1xi4_A 1341 S 1341 (1630)
T ss_pred H
Confidence 4
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=164.13 Aligned_cols=257 Identities=9% Similarity=-0.070 Sum_probs=172.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 178 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444432 2233444444444444444444444444444433 2334444555555555
Q ss_pred cCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc
Q 010575 258 SGKIGKALQVFENMKNK-------------SVITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACCH 323 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~ 323 (507)
.|++++|...|+++.+. ....+..+...+...|++++|...++++.+.... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554431 1223445677888899999999999999886322 157888999999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.|++++|+..|+++.+. .+.+..+|..+..+|...|++++|...|+++ ...| +..+|..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999874 3456788999999999999999999999987 3344 578899999999999999999999
Q ss_pred HHHHhccCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 402 LQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 402 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+++++++.|+ +..+|..++.++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999988876 367899999999999999999888765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-17 Score=148.37 Aligned_cols=268 Identities=11% Similarity=-0.021 Sum_probs=198.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010575 155 AKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 230 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 230 (507)
...|++..|+..++.....++ .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345556666665555443222 2334566777777777777765543 1 3456667777777777778888888
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 231 WIHNYIEQYGL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
..++.+...+. +.+...+..+..+|...|++++|++.|+. ..+...+..++..+.+.|++++|...|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 88888777654 33556666777889999999999999988 567788999999999999999999999999886 35
Q ss_pred CHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 010575 310 NEITF---IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 384 (507)
Q Consensus 310 ~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 384 (507)
+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...|+++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53211 12334445669999999999999974 4667889999999999999999999999997 3344 7778999
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 385 LLAASNIYGDVEL-GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 385 l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999865 6789999999999987544 3455666666665443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=163.73 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC
Q 010575 114 VAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 189 (507)
+..+...+.+.|++++|...|+++....| +..+|..+..++...|++++|+..|+++.+ .+..++..+...+...|
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444433 334444444445555555555555544432 24556666666677777
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-chhHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLA---------------ALSACAQLGAVELGEWIHNYIEQYGLNT-IVPLNNALID 253 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 253 (507)
++++|.+.++++...... +...+.. .+..+...|++++|...++.+.+..... +..++..+..
T Consensus 147 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 777777777766664311 1111100 1122224455555555555555443111 3444444444
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
+|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555544444332 223344444444444444444444444444321 12334444444444444444444
Q ss_pred HHHHHHhH
Q 010575 331 RRYFNIMK 338 (507)
Q Consensus 331 ~~~~~~~~ 338 (507)
...|+++.
T Consensus 305 ~~~~~~al 312 (368)
T 1fch_A 305 VEHFLEAL 312 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-17 Score=151.16 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=170.5
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
+++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 55679999999999999999999999764 56779999999999999999999988877763 466788999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALF 167 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 167 (507)
+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHH
Confidence 9999999988874 367789999999999999999999999976 47999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH
Q 010575 168 ELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+++ .++.+|..++.+|...|+++.|......+. +.| .....++..|.+.|.++++..+++...... +-...+
T Consensus 172 ~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ 243 (449)
T 1b89_A 172 RKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 243 (449)
T ss_dssp HHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHH
T ss_pred HHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHH
Confidence 999 488999999999999999999966554422 334 345578899999999999999999988766 666788
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHH
Q 010575 248 NNALIDMYAKS--GKIGKALQVFENMKN--------KSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIA 316 (507)
Q Consensus 248 ~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ 316 (507)
|+.|.-+|++- ++..+..+.|..-.. .+...|..+.-.|...++++.|... |.++ ....+...|..
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~ 320 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKD 320 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHH
Confidence 88888888764 355666666654433 2456899999999999999998863 4554 12234444444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 374 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (507)
++. +..+.+--.+...-.... .+...+.|+.++...=+...+..+|++.+
T Consensus 321 ~~~---kv~n~elyYkai~fyl~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 321 IIT---KVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHH---HCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHh---chhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 443 344433333222222222 23345666666666666777777776663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-18 Score=152.71 Aligned_cols=246 Identities=11% Similarity=0.057 Sum_probs=203.1
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
+.-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44567789999999999887553 3443 3556678899999999999876644 24667888889999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 260 KIGKALQVFENMKN----K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 260 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+.++|.+.++.+.. | +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 556778888999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCChhH---HHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 335 NIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
+++.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 355321 123344455669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchH-HHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNE-SGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 442 (507)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57899888643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=157.67 Aligned_cols=256 Identities=9% Similarity=-0.048 Sum_probs=174.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 1233344444444444444444444444444432 22344444445555555
Q ss_pred CCHHHHHHHHHhcCCC---ChhHHHH-------------H-HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKNK---SVITWTT-------------M-IA-GLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~---~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
|++++|...|+.+.+. +...+.. + .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 5555555555444321 1111111 1 22 3667788999999999988763 3367888899999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999864 2446788899999999999999999999987 323 4678899999999999999999
Q ss_pred HHHHHHHhccCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 399 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...++++++..|+ ++.++..++.++.+.|++++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998 7889999999999999999999998654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=162.27 Aligned_cols=258 Identities=13% Similarity=-0.006 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 144 VAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
...|..+...+.+.|++++|+..|+++.+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555555666666655555542 244556666666666666666666666665543 23455566666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHH
Q 010575 221 AQLGAVELGEWIHNYIEQYGLN---------TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K---SVITWTTMIAGL 286 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~ 286 (507)
...|++++|...++.+.+.... .....+..+...|...|++++|...|+++.+ | +..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666666554210 0112233456677777778888877777654 2 466777788888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++.+. .+.+..++..+..+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877752 335677888888888888888888888888763 233467778888888888888888
Q ss_pred HHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 367 EKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 367 ~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
...|+++ ...| +...|..+..++...|+.+.+..+.++.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8888876 1111 2567888888888899988888777664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-17 Score=158.01 Aligned_cols=367 Identities=9% Similarity=-0.049 Sum_probs=237.1
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHc-----C--CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcC-----
Q 010575 40 DVYLYNTTIKALCQTDNPLNAVILYNKIQAS-----A--LRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTG----- 106 (507)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 106 (507)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999886542 1 123 23568888889999999999999988876531
Q ss_pred C-C-CcHHHHHHHHHHHHhc--CChHHHHHHHHhcccCCC-ChhhHHHHHHH---HHhcCCHHHHHHHHHhcCC---CCh
Q 010575 107 L-D-SDVHVVAALIQMYASC--KCIYDARKVFDELSLRVW-NVAVWNTMVAG---YAKVGDLNNARALFELMTE---KNV 175 (507)
Q Consensus 107 ~-~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~ 175 (507)
. . ....++..+..++... +++++|+..|++.....| +...+..+... +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 1 1345566555555544 568999999999888777 45555555444 4456777888888877653 345
Q ss_pred hHHHHHHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 010575 176 ISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 251 (507)
Q Consensus 176 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 251 (507)
..+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...+....+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 566666555544 467889999999887764 4566778888899999999999999999988875 4456666666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 252 IDMYAKS-------------------GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 252 ~~~~~~~-------------------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
..+|... +..+.|...|+...+ .+..++..+...|...|++++|+..|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 6665432 235667777776553 345678889999999999999999999998864433
Q ss_pred CHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHH
Q 010575 310 NEI--TFIAILS-ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGS 384 (507)
Q Consensus 310 ~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~ 384 (507)
... .+..+.. .....|++++|+..|++..+ +.|+........ ..+.+++++. .. +.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 221 2223322 24577999999999999885 355543322222 2333444433 22 236678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+...|...|++++|++.|+++++++|.+|.+...++
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999888776665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-17 Score=148.26 Aligned_cols=228 Identities=12% Similarity=-0.001 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010575 77 YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK 156 (507)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 156 (507)
..+..+...+...|++++|..+++.+.+..+. +..++..+..++...|++++|...|+++....|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--------------
Confidence 34555556666666666666666666665432 455566666666666666666666666554433
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHH-------------H-HH-HHh
Q 010575 157 VGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-------------A-LS-ACA 221 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------------l-l~-~~~ 221 (507)
.+..++..+...+...|++++|.+.++++.+.... +...+.. + .. .+.
T Consensus 87 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 87 ----------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTT
T ss_pred ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 13334444555555555555555555555543211 1111111 1 11 244
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 010575 222 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
..|++++|...++.+.+.. +.+..++..+...|...|++++|...++.+.+ .+..+|..+...+...|++++|...
T Consensus 150 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555666666666555543 22344445555555555555555555544432 2233444444445555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 299 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 299 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55444431 1233444444444444455555555444444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=136.16 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 318 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 318 (507)
+++...+..+...+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667777888888899999999999988765 356788888899999999999999999988763 33567888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 010575 319 SACCHV-----------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 386 (507)
Q Consensus 319 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 386 (507)
.++... |++++|+..+++..+. .+-+...+..+..+|...|++++|...|+++ ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999864 2345788889999999999999999999987 2127888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-16 Score=136.74 Aligned_cols=217 Identities=9% Similarity=-0.041 Sum_probs=157.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhHHHHH
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K----S----VITWTTM 282 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~l 282 (507)
+..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...|+...+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444455555555555444444 3444455555555555555555555555443 1 1 4567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 283 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+... .+.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 4453 3455668888999999888752 23356778888888999999
Q ss_pred HHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 363 LQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 363 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+++|...++++ .. ..+...|..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887 22 33677889999999999999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 010575 441 DM 442 (507)
Q Consensus 441 ~~ 442 (507)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=138.36 Aligned_cols=236 Identities=10% Similarity=-0.051 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc----hhHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN--TI----VPLNN 249 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 249 (507)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888877765 66677777888888888888888888877764311 11 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 329 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 329 (507)
.+..+|...|++++|...|+...+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8888888888888888888877652211 234666788899999999988752 2245677888888999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
|...++++.+. .+.+...+..+...|...|++++|...++++ ...| +...|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999874 3446788889999999999999999999987 3334 577899999999999999999999999999
Q ss_pred cC------CCCCchHHHHHH
Q 010575 408 LE------PHNSGNYAILSN 421 (507)
Q Consensus 408 ~~------p~~~~~~~~l~~ 421 (507)
+. |++..++..+..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 88 877666666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-18 Score=168.86 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCC-------CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKS-------KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
..+||+||++||+.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997643 599999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCc-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CC------ChhhHHHHHHHH
Q 010575 83 LKAVVKLSTI-ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VW------NVAVWNTMVAGY 154 (507)
Q Consensus 83 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p------~~~~~~~li~~~ 154 (507)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+ +++.++++... .| ...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 789999999999999999999999987766653 44444444332 11 234445566666
Q ss_pred HhcC
Q 010575 155 AKVG 158 (507)
Q Consensus 155 ~~~~ 158 (507)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=135.69 Aligned_cols=241 Identities=10% Similarity=-0.034 Sum_probs=184.3
Q ss_pred hCCChhHHHHHHHHHhHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 010575 187 QMDQPNEAITLFRRMQVENV---KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 263 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (507)
..|++++|+..|+++.+... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888877532 1234567777778888888888888888888765 4567778888888888999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 264 ALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 264 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
|...|+.+.+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9988888765 35678888999999999999999999999875 444444444555556779999999999888764
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 341 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
.+++...+ .++..+...++.++|...++++ ...|+ ...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23444444 4777788888999999999887 33332 567888999999999999999999999999998644
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466888899999998876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=135.59 Aligned_cols=243 Identities=11% Similarity=-0.023 Sum_probs=132.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhc
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKS 258 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 258 (507)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+..+|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444445555555555555554432 11222344444455555555555555555544221111 12244555555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
|++++|...|+...+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443 233455566666666666666666666655541 2234455555523333346666666666
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCC---HHHHHHHHhhC----CCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM----PFEAN------AAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++.+. .+.+...+..+...+...|+ +++|...++++ ...|+ ...|..+...|...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66653 12234555556666666665 55555555544 11122 246777888899999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcC
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+++++++|+++.++..+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999988888876665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=142.17 Aligned_cols=348 Identities=8% Similarity=-0.040 Sum_probs=142.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 47 TIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI---ELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
+...+.+.|++++|+..|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566667777777777666644 333444455555555555 6666666666543 33444455554444
Q ss_pred cC-----ChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhcCC-CChhHHHHHHHHHHhCCChhHH
Q 010575 124 CK-----CIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN---ARALFELMTE-KNVISWTTLIAGYAQMDQPNEA 194 (507)
Q Consensus 124 ~g-----~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 194 (507)
.| ++++|...|++....++ ...+..|...|...+..+. +.+.+....+ .++..+..+...|...+.++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 43 55666666666555432 2244455555544433222 2222222211 2344455555555555543333
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CCHHHHHHH
Q 010575 195 ITLFRRMQVENVKPDEIAMLAALSACAQLG---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS----GKIGKALQV 267 (507)
Q Consensus 195 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~ 267 (507)
........+.-...+...+..+...|...| +.++|...++...+.| +++...+..|...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 332222211111111114444444444455 5555555555555544 22232223344444332 344444444
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 268 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
|+.....+...+..+...|. .....+++++|...|++..+. | ++
T Consensus 240 ~~~aa~g~~~a~~~Lg~~~~--------------------------------~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 240 LEKIAPGYPASWVSLAQLLY--------------------------------DFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp HHHHGGGSTHHHHHHHHHHH--------------------------------HSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHcCCCHHHHHHHHHHHH--------------------------------hCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 44443223333333333311 002344555555555554432 2 33
Q ss_pred hHHHHHHHHHhhcC-----CHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 348 EQYGCMIDLLGRAG-----YLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 348 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
..+..|...|. .| ++++|..+|++.- ..++..+..|...|.. ..++++|...|+++.+ +.++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHH
Confidence 34444444443 23 5555555555554 3344444444444433 2255555555555543 223444555
Q ss_pred HHHHHHH----cCCchHHHHHHHHHHhCC
Q 010575 419 LSNIYAI----LGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 419 l~~~~~~----~g~~~~A~~~~~~~~~~~ 443 (507)
|+.+|.. ..+.++|..+++...+.|
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555443 234555555555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-15 Score=143.72 Aligned_cols=307 Identities=9% Similarity=0.018 Sum_probs=190.8
Q ss_pred HHHHHHHccCChhHHHHHhccCCC-CCcccHHHHHHHHHcCCCc---hHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC
Q 010575 15 RFIDSCSSLGFSDYAYSIFTHKSK-PDVYLYNTTIKALCQTDNP---LNAVILYNKIQASALRPDNYSFPFVLKAVVKLS 90 (507)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 90 (507)
.+...+.+.|++++|.+.|++..+ .+...+..|...+...|++ ++|+..|++..+. ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356677888999999999988654 4566777788888888888 8999999998863 6666777777555544
Q ss_pred -----CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH---HHHHhcccCCCChhhHHHHHHHHHhcC----
Q 010575 91 -----TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDAR---KVFDELSLRVWNVAVWNTMVAGYAKVG---- 158 (507)
Q Consensus 91 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~li~~~~~~~---- 158 (507)
++++|...|+...+.|.. ..+..|...|...+..+++. +.+......+ +...+..+...|...+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCccc
Confidence 788999999999997743 36677888888776654443 3443333221 5667778888888877
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc----CCHHHHHH
Q 010575 159 DLNNARALFELMTEKNVISWTTLIAGYAQMD---QPNEAITLFRRMQVENVKPDEIAMLAALSACAQL----GAVELGEW 231 (507)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~ 231 (507)
+.+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777778889999999999999 9999999999999987 45666556677777665 79999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcC-----ChHHHHHHHHHH
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDM-Y--AKSGKIGKALQVFENMKNK-SVITWTTMIAGLALHG-----LGREALDMFSRM 302 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m 302 (507)
.|+... +-+...+..|... | ...+++++|...|++..+. +...+..|...|. .| ++++|+..|++.
T Consensus 239 ~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 239 LLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 999887 3445566667666 3 3466777777766665442 4445555555554 33 556666666554
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 010575 303 ERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKS 339 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 339 (507)
. . -+...+..|...|.. ..++++|...|++..+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 4 2 233444444444433 2255555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=159.08 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=98.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
.....+|++||++||+.|++++|.++|.+|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886653 378888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCcH-HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 315 IAILSACCHVGLV-ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 315 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
+++|.++++.|+. +.|.++|++|.++ |+.||..+|++++....+.+-++.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 8888888888874 6788888888887 88888888888877665554333333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=134.88 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=199.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
...|..+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888888899999999999888754 3356677888888888886 999999999888876 556788888889
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH-VGLVEL 329 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~ 329 (507)
++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988775 466789999999999999999999999999863 2367888888888888 566577
Q ss_pred H-----HHHHHHhHHhhCCCCChhHHHHHHHHHhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--------
Q 010575 330 G-----RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG--YLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYG-------- 393 (507)
Q Consensus 330 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g-------- 393 (507)
| +..|+++... .+-+...|..+..++...| ++++|.+.++++...| +...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 5788888763 2335678888888888888 6899999888874444 5667888888888764
Q ss_pred C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHHc
Q 010575 394 D-VELGECALQHL-IKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 394 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 426 (507)
+ .++|+.+++++ ++++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999888999888776654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=124.26 Aligned_cols=225 Identities=8% Similarity=-0.101 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666655552 123344444444444 445555555444444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH-- 323 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 323 (507)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34445555555555 666666666666666543 45556666666666
Q ss_pred --cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 010575 324 --VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YG 393 (507)
Q Consensus 324 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 393 (507)
.+++++|+..|++..+. + +...+..+...|.. .+++++|...|++.-...+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66777777777666653 2 44555566666665 66777777777665212345666667777777 77
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
++++|...++++++.+| +.++..++.+|.+ .|++++|.+++++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777777655 5567777777777 7777788877777765544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-14 Score=134.98 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHHH
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK-IGKALQVFENMKN---KSVITWTTMIAG 285 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~ 285 (507)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777788889999999999999999886 5678889999999999997 9999999999875 466899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR-AGYLQ 364 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 364 (507)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999863 337789999999999999999999999999974 24467889999999999 66657
Q ss_pred HH-----HHHHhhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC--------
Q 010575 365 EA-----EKLLRRM-PFEA-NAAIWGSLLAASNIYG--DVELGECALQHLIKLEPHNSGNYAILSNIYAILG-------- 427 (507)
Q Consensus 365 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 427 (507)
+| +..|+++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3445 6778999999998888 689999999998 999999999999999999975
Q ss_pred -CchHHHHHHHHH
Q 010575 428 -RWNESGKIRKVM 439 (507)
Q Consensus 428 -~~~~A~~~~~~~ 439 (507)
.+++|+++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999998
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-14 Score=123.90 Aligned_cols=137 Identities=13% Similarity=0.001 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
..+..+...+...|++++|...++++...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 183 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHH
Confidence 344444445555555555555555554422233 2344455555555666666666666655542 1223455555555
Q ss_pred HHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.+...|++++|...++++ ... .+...+..+...+...|+.++|.+.++++++..|+++..
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 555666666666555554 222 244455555555666666666666666666666665443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=123.23 Aligned_cols=230 Identities=10% Similarity=-0.081 Sum_probs=157.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAAL 217 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 217 (507)
+..++..+...+...|++++|+..|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6778888999999999999999999988765 56788889999999 999999999999999875 667777777
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 010575 218 SACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGR 293 (507)
Q Consensus 218 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (507)
..+.. .+++++|...++...+.+ +...+..+...|... ....++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCHH
Confidence 77777 788888888887776654 344444444444440 00045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 365 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 365 (507)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 34445555555554 56666666666666543 234555566666666 667777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCC
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 412 (507)
|...|++.-...+...+..+...|.. .+++++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77766665111235566666677776 777778888888877777663
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-14 Score=122.21 Aligned_cols=194 Identities=15% Similarity=0.037 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
++..+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33455555556666666666666666655543 2344455555555566666666666666655554 334445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 254 MYAKS-----------GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 254 ~~~~~-----------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
+|... |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 566666666555443 234455556666666666666666666666554 45555666666
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
++...|++++|+..|+++.+. .+.+...+..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666542 1234455555666666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-15 Score=129.06 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 344444444445555555555555544432 223444445555555555555555555555442 12234444455555
Q ss_pred HhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+.+.|++++|...++++ . ...+..++..+...+...|++++|...++++++..|+++.++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555544 1 1123445555555555555555555555555555555555444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=128.75 Aligned_cols=227 Identities=10% Similarity=-0.035 Sum_probs=186.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHH
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV----ITWTTMIAG 285 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 285 (507)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+...+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34566778899999999999999999875 44566788899999999999999999998766 222 358899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..|+++.+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 335678999999999999999999999999853 34456777777734445569999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHHcCCchHH
Q 010575 366 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLE---PHN-----SGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 366 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 432 (507)
|.+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3344 46788888888888888 888999999998765 442 25788899999999999999
Q ss_pred HHHHHHHHhC
Q 010575 433 GKIRKVMRDM 442 (507)
Q Consensus 433 ~~~~~~~~~~ 442 (507)
.+++++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999743
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-14 Score=124.83 Aligned_cols=197 Identities=6% Similarity=-0.063 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777888888888888888887654 356788889999999999999999999988763 33678888999999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A 398 (507)
...|++++|..+++++... +..| +...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3445 4677888999999999999999999987 323 3678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
...++++++..|++...+..++.++.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-14 Score=121.47 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555666666666666666665443 234566666666777777777777777766542 23556666677777
Q ss_pred hcc-CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 322 CHV-GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 322 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
... |++++|...++++.+. +..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777652 22332 456666777777777777777777766 2223 46667777777777777777
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 398 GECALQHLIKLEP-HNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
|...++++++..| +++..+..++..+...|+.++|..+++.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 7777777777777777777777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.1e-15 Score=139.96 Aligned_cols=261 Identities=9% Similarity=-0.067 Sum_probs=173.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQY----G-LNTIVPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 250 (507)
.+...+...|++++|...|++..+.+. .+. ..+..+...+...|+++.|...+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344555666666666666666555421 121 24555555566666666666666555432 1 1222345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNK---------SVITWTTMIAGLALHGL-----------------GREALDMFSRMER 304 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 304 (507)
+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666677777777777666655431 12466677777777777 7788777777544
Q ss_pred C----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC--
Q 010575 305 A----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-- 373 (507)
Q Consensus 305 ~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 373 (507)
. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2246777778888889999999888887753211112 236778888899999999999988876
Q ss_pred --CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 374 --PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 374 --~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+... ...++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 24577788888999999999999999998765442 34788999999999999999999998863
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=127.61 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566677778888888888888887754 356788888899999999999999999988763 3467888899999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++ .. ..+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788899999999999999999999987 22 34678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=119.04 Aligned_cols=205 Identities=11% Similarity=-0.046 Sum_probs=140.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 288 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 288 (507)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+.+.+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555554444433 23344555555566666666666666655443 345566777777788
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 289 H-GLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 289 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888777333343 466777888888888899998888888764 234577788888888899999999
Q ss_pred HHHHhhC-CC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 367 EKLLRRM-PF-E-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 367 ~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
...++++ .. . .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9988877 22 2 4666777777788899999999999999998999977665443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-14 Score=135.22 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AA 380 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 380 (507)
++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++. +..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4444555555555555555555555432111111 124455555555566666665555544 10111 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+++++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666655443322 3345555666666666666666655543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-14 Score=116.61 Aligned_cols=166 Identities=15% Similarity=0.073 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 354 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (507)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888888889999999999999888753 236678888888899999999999999888763 344567777788
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
..+...++++.|...+.+. ... .+...+..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888999999999998887 323 36778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 010575 433 GKIRKVMRDMG 443 (507)
Q Consensus 433 ~~~~~~~~~~~ 443 (507)
++.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=131.10 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=176.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLN-TIVPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 250 (507)
.....+...|++++|...|+++.+... .+ ...+..+...+...|+++.|...++...+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 344555666666666666666655421 12 234555555666666666666666554432 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREALDMFSR 301 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 301 (507)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777777777777766543 12 2366677777777777 7888877777
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 302 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 302 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
.... +..| ...++..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 1246777778888899999999998887753211112 23677888889999999999999887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 373 M----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 373 ~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.+++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 4567788888999999999999999998765442 34788999999999999999999999
Q ss_pred HHhC
Q 010575 439 MRDM 442 (507)
Q Consensus 439 ~~~~ 442 (507)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-14 Score=125.25 Aligned_cols=237 Identities=11% Similarity=-0.051 Sum_probs=137.8
Q ss_pred CCcHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 010575 90 STIELGREIHCQTVGTGLD---SDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
|++++|...++.+.+.... .+..++..+..++...|++++|...|+++....| +..+|..+...+...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555555555544211 1234455555555555555555555555555444 34555555555555555555555
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 166 LFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 166 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
.|++..+ .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...+....... +
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 5555543 245677777788888888888888888877643 444444444455566678888888887766654 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI 315 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 315 (507)
++...+ .++..+...++.++|...+....+.+ ...|..+...|...|++++|...|++.... .|+. +.
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~ 250 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FV 250 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CH
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HH
Confidence 333333 36666677777777777777766532 355666677777777777777777777664 2322 11
Q ss_pred HHHHHHhccCcHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYF 334 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~ 334 (507)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 2233445556666665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=136.53 Aligned_cols=299 Identities=11% Similarity=-0.015 Sum_probs=170.0
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHH
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYA 155 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~ 155 (507)
+......+...|++++|...++..++.++... ..++..+...|...|++++|...+++....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 76 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 76 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 34445555666666666666666666543211 234555556666666666666655543321
Q ss_pred hcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC-CC----HHHHHHHHHHHhccCC---
Q 010575 156 KVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-PD----EIAMLAALSACAQLGA--- 225 (507)
Q Consensus 156 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~--- 225 (507)
...... ....++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 77 -----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 77 -----------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp -----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -----------HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccc
Confidence 000100 01234555666666667777666666665442100 11 2244444445555555
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 010575 226 -----------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGL 286 (507)
Q Consensus 226 -----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~ 286 (507)
++.|...+....+. +.....+ ...++..+...+
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHH
Confidence 44444444333221 1111000 123455566666
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHH
Q 010575 287 ALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLL 357 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 357 (507)
...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 666677777666666543200 111 235666777777788888888877776643111111 45667777888
Q ss_pred hhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEP------HNSGNYAILSNIY 423 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~ 423 (507)
...|++++|...++++ +..++ ..++..+...+...|++++|...+++++++.+ ....++..++.++
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 8888888888888776 11122 45677888889999999999999999977533 2355778888888
Q ss_pred HHcCCchH
Q 010575 424 AILGRWNE 431 (507)
Q Consensus 424 ~~~g~~~~ 431 (507)
...|+...
T Consensus 358 ~~~g~~~~ 365 (406)
T 3sf4_A 358 MVLGLSYS 365 (406)
T ss_dssp HHHHTTSC
T ss_pred HHhhHhHH
Confidence 88887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=139.09 Aligned_cols=208 Identities=9% Similarity=-0.075 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 227 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
+.+...++...... +.+...+..+..+|...|++ ++|+..|++..+ .+...|..+...|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34556666677777777777 777777776653 34668888888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc--------CCHHH
Q 010575 303 ERARVKPNEITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--------GYLQE 365 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 365 (507)
.+. .|+...+..+...+... |++++|+..|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 876 57778888889999998 9999999999999874 244578889999999988 99999
Q ss_pred HHHHHhhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 366 AEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 366 A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|...|+++ ...| +...|..+..+|...|++++|...|+++++++|+++.++..++.++...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988 4345 78899999999999999999999999999999999999999999999999999999765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-12 Score=124.15 Aligned_cols=403 Identities=9% Similarity=0.043 Sum_probs=273.2
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCC---chHHHHHHHHHHHcC-CCCCcccH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDN---PLNAVILYNKIQASA-LRPDNYSF 79 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~ 79 (507)
+.|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.++ ++.+..+|++..... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46788999999999999999999999998764 455678888888888888 999999999998743 13777777
Q ss_pred HHHHHHHHccCCc--------HHHHHHHHHHHHc-CC-CCc-HHHHHHHHHHHHh---------cCChHHHHHHHHhccc
Q 010575 80 PFVLKAVVKLSTI--------ELGREIHCQTVGT-GL-DSD-VHVVAALIQMYAS---------CKCIYDARKVFDELSL 139 (507)
Q Consensus 80 ~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 139 (507)
..-+....+.++. +.+.++|+..+.. |. .++ ...|...+..... .++++.+.++|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666655554443 3345777776653 55 443 4677777765442 3457788999999886
Q ss_pred CCC--C-hhhHH---HHHHHH----------HhcCCHHHHHHHHHhcC-------C--------------C--C------
Q 010575 140 RVW--N-VAVWN---TMVAGY----------AKVGDLNNARALFELMT-------E--------------K--N------ 174 (507)
Q Consensus 140 ~~p--~-~~~~~---~li~~~----------~~~~~~~~A~~~~~~~~-------~--------------~--~------ 174 (507)
. | + ..+|. .+...+ -...+++.|...+..+. . | +
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 4 4 1 12332 221111 00122333444443311 0 0 0
Q ss_pred hhHHHHHHHHHHhCC-------ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCchh
Q 010575 175 VISWTTLIAGYAQMD-------QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE-WIHNYIEQYGLNTIVP 246 (507)
Q Consensus 175 ~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 246 (507)
...|...+.---..+ ..+.+..+|++++.. ++-+...|...+.-+.+.|+.+.|. .+++...... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 123555544333322 123456678887765 3446677777777778888888886 9999888653 55666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN-------------KS------------VITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
.+-.++....+.|+++.|..+|+.+.+ |+ ...|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777788888899999999999988764 21 23677778888888999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC--
Q 010575 302 MERARVKPNEITFIAILSACCH-VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-- 377 (507)
Q Consensus 302 m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-- 377 (507)
..+.-..+....|...+..-.+ .++++.|..+|+...+.+ +-+...|...++.....|+.+.|..+|+++ ...|
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 8875111223344333332223 355899999999998853 445667778888888899999999999987 3233
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 378 --NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 378 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 3457888888888899999999999999999998653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=129.73 Aligned_cols=134 Identities=11% Similarity=-0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC----Chh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP----KIE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 348 (507)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++++.....-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666666666666666666544210 011 13566677777777888888877777665311111 145
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
++..+...|...|++++|...++++ . ..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677778888888888888888766 1 111 2346777888889999999999999999887655
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-13 Score=125.08 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=109.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------CCchhHHH
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL------NTIVPLNN 249 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 249 (507)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777766543 1111 123455555666666666666666665554210 01123445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKN-----KSV----ITWTTMIAGLALHGLGREALDMFSRMERA----RV-KPNEITFI 315 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~ 315 (507)
.+..+|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555556666666666655554432 111 24555555566666666666666555441 11 11234455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhC---CCCChhHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYG---IEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEAN-AAIWGSLLAA 388 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 388 (507)
.+...+...|++++|...+++...... .+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555556666666666666655543210 11111223344444555555 4555555554432221 1233334444
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLI 406 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~ 406 (507)
|...|++++|...+++++
T Consensus 349 y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-13 Score=122.82 Aligned_cols=277 Identities=10% Similarity=-0.028 Sum_probs=145.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhc
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKV 157 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~ 157 (507)
.....+...|++++|...++++.+..+... ..++..+...|...|++++|...+++....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------- 72 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------------- 72 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------
Confidence 334445566666666666666666533211 234555555666666666666655544321
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHhccCC-----
Q 010575 158 GDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGA----- 225 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~----- 225 (507)
...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 73 ---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 73 ---------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp ---------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred ---------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 000000 0123455566666666777777666666543210 011 2244444555555555
Q ss_pred ---------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 010575 226 ---------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGLAL 288 (507)
Q Consensus 226 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 288 (507)
++.|...++...+. +.....+ ....+..+...+..
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHH
Confidence 44444444433221 0000000 11234445555555
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhh
Q 010575 289 HGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGR 359 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 359 (507)
.|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 5666666665555443100 011 125556666666777777777777666542111111 4456667777777
Q ss_pred cCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 360 AGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 360 ~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|++++|...++++ +..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 77777777777765 11111 346677788888889999999999888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-13 Score=127.05 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=175.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhHHH
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS-----VITWT 280 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~ 280 (507)
....+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999864 2112 346788899999999999999999887653 12 25788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CC-CCChhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRY---GI-EPKIEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 351 (507)
.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|+..+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999775311 112 2478888999999999999999999987621 22 23356788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC-C---C--CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM-P---F--EA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~-~---~--~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+...|.+.|++++|...+++. . . .| ....+..+...+...|+ .++|..++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 1 1 12 12235667778888898 88888888877 333444668889999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010575 422 IYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~ 441 (507)
+|.+.|++++|.+++++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999863
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-13 Score=110.64 Aligned_cols=167 Identities=10% Similarity=0.044 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
+..+|..+...|...|++++|+..|++..+ .+..+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777888888888888888888887764 356788888888999999999999999887753 3356677777888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...++++.+...+.+.... .+.+...+..+...|.+.|++++|++.|+++ ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999998863 3446778888999999999999999999987 3344 677899999999999999999
Q ss_pred HHHHHHHhccCCCCC
Q 010575 399 ECALQHLIKLEPHNS 413 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~ 413 (507)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-11 Score=111.56 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=146.3
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACA-------QLGAV-------ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
++|..+|++.+... +.+...|..++..+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766642 334455555555443 24654 7777777777763223445567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 010575 258 SGKIGKALQVFENMKN--K-SVI-TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC-CHVGLVELGRR 332 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~ 332 (507)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888877777665 2 233 67777777778888888888888877753 22334444333322 23588888888
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA--NAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+|++..+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887642 335677777888888888888888888877 2 243 35677777777778888888888888888
Q ss_pred ccCCCCCc
Q 010575 407 KLEPHNSG 414 (507)
Q Consensus 407 ~~~p~~~~ 414 (507)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=9e-13 Score=114.61 Aligned_cols=186 Identities=11% Similarity=-0.055 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILS 319 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 319 (507)
+..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34445555555555555555555554432 33444444555555555555555555555543 22 2344455555
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKI-------EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAA 388 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~ 388 (507)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++ ...|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555421 1122 23444444455555555555555544 33333 2334444444
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+... +...++++..+.+.+...+... .....+.+++|+..+++..+
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4322 2233444444444432222222 22333445999999998874
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-10 Score=111.76 Aligned_cols=179 Identities=8% Similarity=0.001 Sum_probs=118.1
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 263 KALQVFENMKN---KSVITWTTMIAGLALHGLGREAL-DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 263 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.+..+|++... .+...|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|..+|+.+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455665543 35567777777777778877786 888887764 33455556666667777788888888888777
Q ss_pred Hhh---------CCCCC------------hhHHHHHHHHHhhcCCHHHHHHHHhhC-CC--CCCHHHHHHHHHHHHHc-C
Q 010575 339 SRY---------GIEPK------------IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF--EANAAIWGSLLAASNIY-G 393 (507)
Q Consensus 339 ~~~---------~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~l~~~~~~~-g 393 (507)
... .. |+ ..+|...+....+.|..+.|..+|.++ .. .+....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 531 01 21 235777777777778888888888777 21 12233443333333333 4
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
+.+.|..+|+.+++..|+++..+...++.....|+.+.|..+|++.....
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 47888888888888888877777777877777888888888888776443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-13 Score=133.45 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 354 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (507)
..+|+.|...|.+.|++++|+..|++.++. .| +..++..+..++.+.|++++|+..|+++.+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 457888888899999999999999988875 34 5678888999999999999999999998864 233578889999
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
.+|...|++++|++.|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999987 4445 6778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010575 433 GKIRKVMR 440 (507)
Q Consensus 433 ~~~~~~~~ 440 (507)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=126.10 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL 241 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 241 (507)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777888888888888888888887762 22233455666677777777777777777766643 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 010575 242 -NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA---- 305 (507)
Q Consensus 242 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 305 (507)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+..++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 222344555555566666666665555544320 1123444444444444444444444444332
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh------CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 010575 306 --RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY------GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376 (507)
Q Consensus 306 --g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (507)
+..|+ ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11111 1233344444444444444444444444310 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
....+..+...+...+.+.++...++.+....|....++..++.+|.+.|++++|.+++++..
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011112222233344555556666666666667667777777777777777777777777764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-11 Score=110.90 Aligned_cols=261 Identities=14% Similarity=0.031 Sum_probs=171.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AMLAALSACAQLGAVELGEWIHNYIEQYGLN-TI----VPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 250 (507)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766643222221 3445555666777777777777766543111 11 223455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-------K----SVITWTTMIAGLALHGLGREALDMFSRMERARVK--P--NEITFI 315 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~ 315 (507)
+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 67777788888888877776543 1 1235566777888889999998888887653211 1 235667
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-----CMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGS 384 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~ 384 (507)
.+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777888888999999999888865321111111222 2334477889999999999887 22221 235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+...+...|++++|...++++++..+.. ..++..++.++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7788888999999999999886654321 1366778888999999999999888875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-12 Score=106.59 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555666666666666666555432 224555666666666667777777777666653 233456666667777
Q ss_pred hhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
...|++++|.+.++++ . ...+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|.++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777665 1 2235667777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHh
Q 010575 436 RKVMRD 441 (507)
Q Consensus 436 ~~~~~~ 441 (507)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=124.64 Aligned_cols=178 Identities=11% Similarity=-0.017 Sum_probs=156.1
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 261 IGKALQVFENMKN---KSVITWTTMIAGLALHGLG-REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 261 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
++++...++.... .+...|..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3667899999999999999 99999999998863 33578999999999999999999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc--------CCHHH
Q 010575 337 MKSRYGIEPKIEQYGCMIDLLGRA---------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY--------GDVEL 397 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------g~~~~ 397 (507)
+.+ ..|+...+..+...|... |++++|...|+++ ...| +...|..+..+|... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 984 468888999999999999 9999999999988 3334 678899999999998 99999
Q ss_pred HHHHHHHHhccCC---CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 398 GECALQHLIKLEP---HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 398 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+..|+++++++| +++.+|..++.+|...|++++|++.+++..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 89999999999999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-11 Score=109.47 Aligned_cols=213 Identities=8% Similarity=-0.010 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 010575 227 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK-------SGKI-------GKALQVFENMKN---K-SVITWTTMIAGLAL 288 (507)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 288 (507)
+.|..+|++++... +.+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 5667788888877763 5875 899999998765 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh-hcCCHHH
Q 010575 289 HGLGREALDMFSRMERARVKPN-EI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG-RAGYLQE 365 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 365 (507)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 7888999999999999999999999863 2344555554443322 3699999
Q ss_pred HHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 366 AEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKL---EPH-NSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 366 A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|..+|+++ ... .+...|..++..+...|++++|..+|+++++. .|+ +..+|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 222 36788999999999999999999999999985 553 5678999999999999999999999998
Q ss_pred HhCCC
Q 010575 440 RDMGV 444 (507)
Q Consensus 440 ~~~~~ 444 (507)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 75544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-11 Score=112.18 Aligned_cols=225 Identities=11% Similarity=0.029 Sum_probs=109.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----C-CchhHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL-----N-TIVPLN 248 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 248 (507)
.....+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777654311 112 23455556666666666666666665554210 0 113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMER-----ARVKPNEITF 314 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 314 (507)
+.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 4555555666666666555554432 11 12444555555555666666665555544 21 1123445
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCC---CCChhHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCCH-HHHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEANA-AIWGSLLA 387 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~ 387 (507)
..+...+.+.|++++|...+++..+...- +.....+..+...|...|+ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555566666666665555543111 1112223334444444444 55555555544222211 12333444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHL 405 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~ 405 (507)
.|...|++++|...++++
T Consensus 345 ~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 444444444444444444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-12 Score=118.78 Aligned_cols=225 Identities=8% Similarity=-0.080 Sum_probs=171.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhHH
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGL--N---TIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS-----VITW 279 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~ 279 (507)
.....+...|+++.|...+++..+... . ....++..+..+|...|+++.|...+.+..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456789999999999999886421 1 1245778899999999999999988887653 12 3478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCChhHHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIEQYG 351 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ 351 (507)
+.+...|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|+..+++..... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999987752 1111 12467788889999999999999999988621 2222367788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM----PF--EAN-AAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+...|.+.|++++|...+++. +. .|. ...+..+...+...|+ +.+|+..+++. ...|.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 8999999999999999999886 11 222 3345556666777788 88888888773 223344567889999
Q ss_pred HHHHcCCchHHHHHHHHHH
Q 010575 422 IYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~ 440 (507)
+|.+.|++++|.+++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=122.09 Aligned_cols=247 Identities=11% Similarity=0.035 Sum_probs=169.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHC------C
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTE--------K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVE------N 205 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 205 (507)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567788999999999999999999998865 2 2356888999999999999999999998764 2
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 010575 206 -VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--- 274 (507)
Q Consensus 206 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 274 (507)
.+.....+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...|+.+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567788889999999999999999998865 22 234567788899999999999999999887542
Q ss_pred -----C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 275 -----S---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 275 -----~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
+ ..++..+...|...|++++|...++++.+.. |+. .+..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------H
Confidence 2 3478888999999999999999999988741 110 000000 00000000 1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRMP-FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...+..+...+...+.+.+|...++... ..| +..++..+..+|...|++++|..++++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444555666666666652 223 4456788888888999999999999998887664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=106.60 Aligned_cols=205 Identities=11% Similarity=0.001 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIA 284 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 284 (507)
.|+..+......+...|++++|...++...+...+++...+..+..+|...|++++|...|+...+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888888999999999999999999999875477777777999999999999999999988753 4568889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 010575 285 GLALHGLGREALDMFSRMERARVKPNE-------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 354 (507)
Q Consensus 285 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 354 (507)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 2244 4577788888999999999999999984 3554 56778888
Q ss_pred HHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 355 DLLGRAGYL--QEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 355 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766643 232221 1 22344444433 34567799999999999999999988877776553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-11 Score=100.61 Aligned_cols=168 Identities=11% Similarity=-0.006 Sum_probs=143.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888899999999999998876 356788889999999999999999999988763 34677888899999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|++++|...++++... .+.+...+..+...+...|++++|...++++ . ...+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3456788889999999999999999999987 2 2346788999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 010575 400 CALQHLIKLEPHNSGN 415 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~ 415 (507)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998886543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-11 Score=106.27 Aligned_cols=187 Identities=11% Similarity=-0.011 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILS 319 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~ 319 (507)
.|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..+++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666655432 11 346777777888888888888888776642 1111 1346778888
Q ss_pred HHhcc-CcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CH-----HHHHHH
Q 010575 320 ACCHV-GLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NA-----AIWGSL 385 (507)
Q Consensus 320 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~-----~~~~~l 385 (507)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|...|+++ ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988764211111 356788899999999999999999987 2222 21 256778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--HcCCchHHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGN-----YAILSNIYA--ILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 440 (507)
..++...|++++|+..++++++++|+.... +..++.++. ..+++++|++.|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888999999999999999999999986553 345566664 4567888888886553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-09 Score=101.09 Aligned_cols=162 Identities=10% Similarity=-0.026 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-hHHH--
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVK----PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-PLNN-- 249 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-- 249 (507)
++..+...+...|++++|...+++....... ....++..+...+...|++++|...++........++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3445556666666666666666665542211 11234555555666666666666666665543111110 1111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHH
Q 010575 250 ---ALIDMYAKSGKIGKALQVFENMKNKSV-------ITWTTMIAGLALHGLGREALDMFSRMERA----RVKPNE-ITF 314 (507)
Q Consensus 250 ---~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~ 314 (507)
..+..+...|++++|...++.....+. ..+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 122335556666666666665544211 12334445555555555555555554321 111111 133
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444555555555554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-10 Score=100.84 Aligned_cols=207 Identities=8% Similarity=-0.010 Sum_probs=133.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN-EITF 314 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~ 314 (507)
.+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555666667777777777777777654 2 2 34566667777777777777777777766421 112 3445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 010575 315 IAILSACCH--------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 386 (507)
Q Consensus 315 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 386 (507)
..+..++.. .|++++|+..|+++.+.+ +.+......+.......+.+ ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 556666666 677777777777776542 11222222211111110000 11246678
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCceeEE
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAIL----------GRWNESGKIRKVMRDMGVKKMPGCSYI 453 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (507)
..|...|++++|+..++++++..|+++ .++..++.+|... |++++|+..++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999854 4788999999877 899999999999974332
Q ss_pred EECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 010575 454 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 489 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 489 (507)
.+|...+....+.++...+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2444456677777777766554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=104.12 Aligned_cols=223 Identities=12% Similarity=-0.038 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
+++|...|++. ...|...|++++|...|++.... |-.++ ..+|..+..+|...|++++|...++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666655543 55666677777777776665442 11111 2344555555555555555555554
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC--
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGREALDMFSRMERARVK-PN-- 310 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~-- 310 (507)
...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 102 ~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 102 NAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 44321 1111222111 23566677777775 8888888888877653110 01
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHH--
Q 010575 311 --EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-----EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-- 380 (507)
Q Consensus 311 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-- 380 (507)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++. ...|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3457778888888888999988888887642111221 14667777888889999999988887 4444321
Q ss_pred ----HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 381 ----IWGSLLAASN--IYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 381 ----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
.+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2344555554 45678888888888888888754444333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-11 Score=105.12 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=83.8
Q ss_pred HhCCChhHHHHHHHHHhHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 010575 186 AQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNAL 251 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 251 (507)
...|++++|...|++.++. ..+....++..+...+...|++++|...++.+.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666655441 11223445666667777777777777777766643 11 2234456666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA------RVKP-NEIT 313 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~ 313 (507)
..+|...|++++|...|.+..+. ...++..+...|...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 66777777777776666554321 1234555555555666666666666555442 1111 1234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=120.25 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=128.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
+...++.|..+|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356677778888888888888888877654 356778888888888888888888888888752 2246788888888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|++.|+++.+. -+-+...|..+..+|.+.|++++|++.|+++ ...| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888899998888888863 2335678888888888899999999888887 4445 566888888888999999999
Q ss_pred HHHHHHHhccCC
Q 010575 399 ECALQHLIKLEP 410 (507)
Q Consensus 399 ~~~~~~~~~~~p 410 (507)
.+.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 888888876543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=99.37 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=81.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 393 (507)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|+++ ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33445566777777777776653 233 2344556777777777777777777776 3334 5667777777777788
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI-RKVMR 440 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 440 (507)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888888888888888887777788888788888877766554 45554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-09 Score=95.91 Aligned_cols=238 Identities=10% Similarity=0.006 Sum_probs=109.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010575 154 YAKVGDLNNARALFELMTEKNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 232 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 232 (507)
..-.|++..++.-..++...+. ..-..+.++|...|+++.. ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3346677776665555443222 2223344666666666531 11223332333332222 211 4444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 233 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+++....+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 54444433 233333345555555566666666665554321 2334455555556666666666666655543
Q ss_pred CC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC--
Q 010575 308 KP-----NEITFIAILSAC--CHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-- 375 (507)
Q Consensus 308 ~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 375 (507)
.| +..+...++.++ ...| ++..|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34 233444444332 2222 555556666555432 233222222333555555555555555443 11
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 376 --------EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 376 --------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.| ++.+...++......|+ +|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 12 33344344444444444 55555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-10 Score=101.72 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=145.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VIT 278 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~ 278 (507)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888999999999999999999875 223 56778899999999999999999999875 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 279 WTTMIAGLAL--------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 279 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
+..+..++.. .|++++|+..|++..+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3432 222111 111111111 1122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCc
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+..+...|.+.|++++|...|+++ ...| ....+..+..+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888889999998888877 2223 245677777777765 8999999999999999999864
Q ss_pred ---hHHHHHHHHHHcCCchH
Q 010575 415 ---NYAILSNIYAILGRWNE 431 (507)
Q Consensus 415 ---~~~~l~~~~~~~g~~~~ 431 (507)
+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-09 Score=94.53 Aligned_cols=159 Identities=7% Similarity=-0.068 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-----ChhHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-----KIEQYG 351 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 351 (507)
++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+++.|.+.++.|.+. .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33344444555555555555555544432211 2234444445555555555555555555432 33 122333
Q ss_pred HHHHH--HhhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------CCCCCchH
Q 010575 352 CMIDL--LGRAG--YLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL----------EPHNSGNY 416 (507)
Q Consensus 352 ~l~~~--~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~ 416 (507)
.|+.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+. +|+++.++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 33333 11122 455555555554 22233222222233445555555555555544443 24455555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++.+....|+ +|.++++++.+
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444444 44555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.9e-10 Score=95.57 Aligned_cols=182 Identities=13% Similarity=0.022 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN--KS----VITWTTMIAGLALHGLGREALDMFSRMERARVK-PNE-ITFIAI 317 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~l 317 (507)
..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444566677777888888888877664 22 235666777788888888888888887764221 111 234444
Q ss_pred HHHHhc------------------cCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC
Q 010575 318 LSACCH------------------VGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 378 (507)
Q Consensus 318 ~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 378 (507)
..++.. .|++++|+..|+++.+. .|+ ...+........ .....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH-----------
Confidence 444433 35666666666666642 222 222211111000 00000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999976 57899999999999999999999999866654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-10 Score=88.27 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNI 391 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 391 (507)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ . ...+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555442 1223444555555555555555555555554 1 12244556666666777
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.|++++|...++++++..|+++..+..++.++.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777777777777677777777777777777777777777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=99.15 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=110.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
|...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344455667788888888876653 333 345566778888889999999998888864 234677888888899999
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECA-LQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
|++++|...|+++ ...| +...|..+...|...|++++|... ++++++++|+++.+|.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999998887 4445 577889999999999998776655 699999999999999999999888875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-10 Score=114.36 Aligned_cols=169 Identities=11% Similarity=-0.060 Sum_probs=118.6
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 256 AKSGKIGKALQVFENMK--------N---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
...|++++|++.|++.. + .+...+..+...+...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777777765 2 345667777777777888888888887777642 22556777777777777
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
|++++|+..|+++.+. .+.+...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877753 13345667777777778888877 7777776 3333 5567777777788888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877777777777766554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-09 Score=95.73 Aligned_cols=130 Identities=11% Similarity=0.041 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHC------CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVE------NV-KPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------G- 240 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 240 (507)
..++..+...|...|++++|...+++..+. +- +....++..+...+...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777888888888888888777653 11 223456777888888888888888888877764 1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------S---VITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.+....++..+...|...|++++|...|++..+. + ..++..+...|...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334667888899999999999999999877542 2 35788899999999999999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-09 Score=89.49 Aligned_cols=172 Identities=8% Similarity=-0.138 Sum_probs=139.1
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 010575 264 ALQVFENMKN-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----LVELGRRYFNIMK 338 (507)
Q Consensus 264 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 338 (507)
|.+.|+...+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4445544433 466778888888888899999999999988865 56777778888877 6 8999999999987
Q ss_pred HhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 010575 339 SRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNI----YGDVELGECALQHLI 406 (507)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 406 (507)
+. -++..+..|...|.. .+++++|..+|++. ...|. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 63 367778888888877 88999999999988 43443 7888889999988 889999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010575 407 KLEPHNSGNYAILSNIYAIL-G-----RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 407 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 444 (507)
+. |.++.++..|+.+|... | ++++|++++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66688999999999875 3 89999999999876664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=97.94 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 261 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344445555554555677778888899999999999999988763 236678888999999999999999999998754
Q ss_pred hCCCCChhHHHH-HHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--Cch
Q 010575 341 YGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGN 415 (507)
Q Consensus 341 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 415 (507)
.|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233466778888888888877 3334 67889999999999999999999999999999997 889
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-09 Score=84.11 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888888888888888887753 335677778888888889999999999888764 244567788888888
Q ss_pred hhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 358 GRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...|++++|.+.++++ .. ..+...+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999998877 22 335778888888999999999999999999888886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=91.06 Aligned_cols=128 Identities=9% Similarity=-0.047 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|+++.+. -+.+...+..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 348888999999999999999998863 336788899999999999999999999999874 24457888888888876
Q ss_pred cCC--HHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 360 AGY--LQEAEKLLRRMPFEANA--AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 360 ~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|+ .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 455667777763 3443 34555666778899999999999999999998
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-09 Score=97.79 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=148.9
Q ss_pred CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 188 MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ-LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 188 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566677777776654211 10 111 45666666665543 345667777777777
Q ss_pred HHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 010575 267 VFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERAR---VKPN--EITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 267 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766543 11 2467788888999999999999998876421 1121 3567788888888 99999999
Q ss_pred HHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010575 333 YFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 333 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
.|++....+.-..+ ..++..+...|.+.|++++|+..|+++ +..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 467888899999999999999999987 11122 2356667777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHHcCCchHHHH
Q 010575 401 ALQHLIKLEPHNSGN-----YAILSNIYAILGRWNESGK 434 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 434 (507)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99975543 34455555 5677766655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-07 Score=90.84 Aligned_cols=202 Identities=10% Similarity=-0.015 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHh
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA-LQVFEN 270 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~ 270 (507)
+.+..+|++++... +.+...|...+.-+.+.|+++.|..+++...+. +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45667888887753 445667777777778888999999999988887 444433322 2221111111 111111
Q ss_pred cC------------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHh
Q 010575 271 MK------------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC-HVGLVELGRRYFNIM 337 (507)
Q Consensus 271 ~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 337 (507)
.. ......|...+....+.++.+.|..+|++. .. ...+...|......-. ..++++.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001234556666666677788888888877 32 1224444432222111 223688888888888
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 338 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
.+.+ +-++..+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7753 2234455666776777788888888888873 245667777766667788887777777775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=90.20 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-Hhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 360 (507)
+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..++++... .|++..+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344445555555555555444321 113344455555555555555555555555432 1222222111111 1111
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHH
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+...+|...+++. ...| +...+..+..++...|++++|+..++++++.+|+. +.++..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222355555555 2334 57788889999999999999999999999999875 558999999999999999999999
Q ss_pred HHHH
Q 010575 437 KVMR 440 (507)
Q Consensus 437 ~~~~ 440 (507)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-09 Score=106.84 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 258 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998863 335788899999999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccC
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLE 409 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 409 (507)
++..+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2445788999999999999999999999987 3334 677888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010575 410 PHNSGNYAILS 420 (507)
Q Consensus 410 p~~~~~~~~l~ 420 (507)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-10 Score=87.99 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456777888888999999999999888 3344 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
+.|++++|++.|++....
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=83.24 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..+......|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555566666666666666554 2222 455566666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHH
Q 010575 426 LGRWNESGKIRKVMR 440 (507)
Q Consensus 426 ~g~~~~A~~~~~~~~ 440 (507)
.|++++|++.|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-08 Score=102.59 Aligned_cols=190 Identities=12% Similarity=-0.031 Sum_probs=149.1
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 010575 221 AQLGAVELGEWIHNYIE--------QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 289 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 289 (507)
...|++++|...++... +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 332 55677888899999999999999999998875 4678999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 369 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (507)
|++++|+..|++..+.. +-+...+..+..++...|++++ +..|+++.+. .+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 2256788889999999999999 9999999864 244678899999999999999999999
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCCch
Q 010575 370 LRRM-PFEAN-AAIWGSLLAASNIYGD-----VELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 370 ~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 415 (507)
|+++ ...|+ ...+..+..++...++ .+...+..+...++.++++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56675 4577777777766555 333444444444455554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=97.56 Aligned_cols=197 Identities=11% Similarity=-0.024 Sum_probs=149.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 222 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
..|++++|..++++..+.... . + +...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899888887764311 1 0 1115788888888765 35678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 302 MERA----RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIE--P--KIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 302 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
..+. +-.+. ..+|..+...|...|++++|+..|++..+.+.-. + ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888899999999999999999887542111 1 13577888899988 999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHHcCCchHHHHHHHH
Q 010575 373 M----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 373 ~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
. +...+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11111 45788889999999999999999999998776543 2677788888899999999999999
Q ss_pred HH
Q 010575 439 MR 440 (507)
Q Consensus 439 ~~ 440 (507)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=85.16 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC-----
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE--LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----- 362 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 362 (507)
+++++++.+++++.+.. +-+..+|..-...+.+.|.++ ++++.++++.+. -+-|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555432 124444444444444444444 555555555542 12344444444444444443
Q ss_pred -HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccC---CCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 363 -LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHLIKLE---PHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 363 -~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++++++ |.++.++..++++|.+.|+.++|+++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2222 555565555555555553 22444555555444 55566666666666666666666666
Q ss_pred HHHHH
Q 010575 436 RKVMR 440 (507)
Q Consensus 436 ~~~~~ 440 (507)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=87.13 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...+..+...+.+.|++++|...|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677788888899999999988887 3334 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010575 424 AILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~ 442 (507)
...|++++|++.+++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-09 Score=102.54 Aligned_cols=146 Identities=8% Similarity=-0.125 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 224 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665543 33455666666666677777777777766554 234566666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc---CCHHHHHHHHhhC
Q 010575 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---GYLQEAEKLLRRM 373 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 373 (507)
+..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |++++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666542 224556666666666777777777777766653 123455666666666666 6777777666665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-09 Score=81.00 Aligned_cols=114 Identities=12% Similarity=0.002 Sum_probs=94.2
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 010575 307 VKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 383 (507)
Q Consensus 307 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 383 (507)
+.|+. ..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|+++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 45667788888899999999999888863 2446788888889999999999999999887 3334 677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+..++...|++++|+..|+++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999888888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=86.14 Aligned_cols=128 Identities=14% Similarity=-0.040 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..|++.... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34445556666677777776666552 445666666666666667777777766666653 133455566666666
Q ss_pred hhcCCHHHHHHHHhhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 358 GRAGYLQEAEKLLRRM-PFEA-N----------------AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...|++++|.+.|+++ ...| + ...+..+..++...|++++|...+++++++.|+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666655 1111 1 145555666666666666666666666666655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=86.45 Aligned_cols=185 Identities=11% Similarity=-0.049 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHH
Q 010575 209 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-V---ITWT 280 (507)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~ 280 (507)
+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455667778899999999999999999864321 235677889999999999999999999875 32 2 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 281 TMIAGLAL------------------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 281 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
.+..++.. .|++++|+..|+++.+. .|+. ......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 56666654 57899999999999986 3443 222211110 01111111
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 342 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677888999999999999987 33343 256888889999999999999999999998888654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-08 Score=84.10 Aligned_cols=134 Identities=11% Similarity=-0.018 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
..+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3466667777777777777776654 345677777777777777777777777777652 224566666666665544
Q ss_pred c--HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 010575 326 L--VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 386 (507)
Q Consensus 326 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 386 (507)
. .+.+...++... ...|....+.....++...|++++|...|+++ ...|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 334444444443 22222233344555666677778888777776 5667765544443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-07 Score=79.34 Aligned_cols=228 Identities=9% Similarity=0.000 Sum_probs=168.6
Q ss_pred CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---C
Q 010575 189 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLNNALIDMY----AKS---G 259 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 259 (507)
...++|++++..++..+ +-+...++.--.++...+ +++++...++.+.... +.+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33457888888877743 223344555556666666 7888888888887765 44555555544444 444 7
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HH
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR--EALDMFSRMERARVKPNEITFIAILSACCHVGL------VE 328 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~ 328 (507)
++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 88899998888875 46678888777788888888 999999999987533 77777766666666666 88
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH-HHHHHhhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE-AEKLLRRM-PF----EANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998864 35578889888888888887544 55677766 21 347788999999999999999999999
Q ss_pred HHHhc-cCCCCCchHHHHHH
Q 010575 403 QHLIK-LEPHNSGNYAILSN 421 (507)
Q Consensus 403 ~~~~~-~~p~~~~~~~~l~~ 421 (507)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99986 89998777776553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-08 Score=89.57 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--CCCC--hh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE-----ITFIAILSACCHVGLVELGRRYFNIMKSRYG--IEPK--IE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 348 (507)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667788888999999888887765322111 1233455567788899999999988875311 1111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NS 413 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 413 (507)
+++.+...|...|++++|...|+++ ...|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999998876 11222 257888999999999999999999999775432 14
Q ss_pred chHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNES-GKIRKVMR 440 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 440 (507)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=85.56 Aligned_cols=160 Identities=9% Similarity=-0.020 Sum_probs=119.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARV-KPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 351 (507)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334666677788999999999998863122223 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC-----C--C-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRMP-----F--E-A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNY 416 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~-----~--~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 416 (507)
.+...|...|++++|...|+++- . . + ...++..+...|...|++++|...+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999888761 1 1 1 12367888999999999999999999998765432 4678
Q ss_pred HHHHHHHHHcCC-chHHHHHHHHHH
Q 010575 417 AILSNIYAILGR-WNESGKIRKVMR 440 (507)
Q Consensus 417 ~~l~~~~~~~g~-~~~A~~~~~~~~ 440 (507)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=84.09 Aligned_cols=156 Identities=9% Similarity=-0.012 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 323 (507)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566777888888888888888775 35677888888888888888888888887664 3344333222211 112
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~ 399 (507)
.+....|+..+++..+. .+.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333467788887753 2335778888888899999999999998887 44443 557888888899999999999
Q ss_pred HHHHHHhc
Q 010575 400 CALQHLIK 407 (507)
Q Consensus 400 ~~~~~~~~ 407 (507)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=92.17 Aligned_cols=355 Identities=9% Similarity=-0.008 Sum_probs=192.8
Q ss_pred cCC-CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 010575 53 QTD-NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC-IYDA 130 (507)
Q Consensus 53 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 130 (507)
+.| +++.|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488889999888762 243 8999999999999884 4688899888887777663 4556
Q ss_pred HHHHHhcccC-C--C-ChhhHHHHHHHHH----hcCCHHHHHHHHHhcCC-CCh---hHHHHHHHHHHhC----------
Q 010575 131 RKVFDELSLR-V--W-NVAVWNTMVAGYA----KVGDLNNARALFELMTE-KNV---ISWTTLIAGYAQM---------- 188 (507)
Q Consensus 131 ~~~~~~~~~~-~--p-~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~-~~~---~~~~~li~~~~~~---------- 188 (507)
..+|+..... + | +...|...+..+. ..++.+.+.++|++... |.. ..|......-...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6777766543 2 2 5677777776654 24568888889988765 211 1222222111110
Q ss_pred ---CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc--CC-----HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 189 ---DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL--GA-----VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 189 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
+.+..|..+++.+...-...+...|...+.--... +- .+.+..+++.++... +.+..+|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 11222333333333210001222333333322211 10 234556777766653 44466666677777777
Q ss_pred CCHHHHHHHHHhcCC-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhcc
Q 010575 259 GKIGKALQVFENMKN-KSV-ITWTTMIAGLALHGLGREALDMFSRMERAR---------VKP---NEITFIAILSACCHV 324 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p---~~~~~~~l~~~~~~~ 324 (507)
|+.+.|..+|++... |+. ..|. .|+...+.++. ++.+.+.- ..+ ....|...+....+.
T Consensus 227 ~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 778887777776543 221 1222 22222122222 22222110 001 113445555555556
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
++.+.|..+|+.+ .. . ..+...|...+..-...+ +.+.|..+|+.. ....++..|...+.-....|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6778888888777 32 1 223344433232222233 577888888766 1212344566666666777888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|+++ +.+...|...+..-...|+.+.+.+++++..
T Consensus 377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877 2345567777766667788887877776665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-08 Score=82.27 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ... .+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888887763 2335677777888888888888888888776 222 3567888889999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHHcCCchHHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKVMR 440 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 440 (507)
...|++++|...++++++..|++...+..+..+ +.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988887554444 888899999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.3e-08 Score=85.79 Aligned_cols=162 Identities=9% Similarity=-0.061 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHHHH
Q 010575 209 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWT-TMIAG 285 (507)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~ 285 (507)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.. |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455556666677777777777777777664 44556667777777888888888888877765 3332222 22233
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+...++.++|+..+++..+.. +.+...+..+...+...|++++|+..|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 556667777777777776652 2355667777777777777777777777777641111124566667777777777766
Q ss_pred HHHHHhh
Q 010575 366 AEKLLRR 372 (507)
Q Consensus 366 A~~~~~~ 372 (507)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.8e-08 Score=81.42 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 327 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 327 (507)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566666677777776666666666666666666666677777776666666542 23455666666666666777
Q ss_pred HHHHHHHHHhHHhhCCC-------------C-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC
Q 010575 328 ELGRRYFNIMKSRYGIE-------------P-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 378 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 378 (507)
++|+..|+++.+...-. | ....+..+..+|...|++++|...|+++ ...|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 77776666666521100 0 1245566666666667777776666665 44443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-08 Score=77.82 Aligned_cols=117 Identities=11% Similarity=-0.040 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHH
Q 010575 310 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLA 387 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 387 (507)
+...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456666777777777777777777777642 2335667777777777788888888877776 222 35678888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
++...|++++|...++++++..|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999988899999988887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.2e-08 Score=76.04 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ . ...+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456667777777888888888888887764 2345667777888888888888888888776 2 23466788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999998888888888877654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=79.01 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888876 3233 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
..|++++|++.+++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=77.12 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666777777788888888888887763 2345677777888888888888888888776 2233 56788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
+...|++++|...++++++..|+++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=87.32 Aligned_cols=118 Identities=8% Similarity=0.056 Sum_probs=72.8
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHH-HHHcCCH--HH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAA-SNIYGDV--EL 397 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~-~~~~g~~--~~ 397 (507)
..|++++|+..++..... .+.+...|..+...|...|++++|...|+++ ... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 455666666666666543 2334556666666666666666666666665 212 245556666666 5566776 77
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|...++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-08 Score=78.44 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888877 3334 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|++++|++.+++...
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988864
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=78.86 Aligned_cols=172 Identities=14% Similarity=0.008 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHH
Q 010575 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK----CIYDARKVF 134 (507)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 134 (507)
+|+..|++..+.| ++..+..+...+...+++++|...|+...+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666643 55566666666666777777777777776654 45556666666666 5 677777777
Q ss_pred HhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----CCChhHHHHHHHHH
Q 010575 135 DELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTEKN-----VISWTTLIAGYAQ----MDQPNEAITLFRRM 201 (507)
Q Consensus 135 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m 201 (507)
++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +.++..|...|.. .+++++|+..|++.
T Consensus 77 ~~A~~~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7664432 45555666666655 667777777777666532 4666677777766 66777777777777
Q ss_pred hHCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHHcC
Q 010575 202 QVENVKPDEIAMLAALSACAQL-G-----AVELGEWIHNYIEQYG 240 (507)
Q Consensus 202 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 240 (507)
.+.+ .+...+..+...|... | ++++|...++...+.|
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6641 2333445555555432 2 6777777777766665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=91.24 Aligned_cols=190 Identities=9% Similarity=-0.080 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+...+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555666777777777777777776653 356677778888888888888888888877652 23567777888888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
...|++++|...|+++.+.. |+. ..+...+....+..+...... .......++......+.. + ..|+.++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 88888888888888877531 211 111111111111111111111 112222233333333322 2 3689999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRD 441 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 441 (507)
.++++++.+|++......+...+.+. +.+++|.++|++..+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999877777887777776 778999999998864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-07 Score=80.69 Aligned_cols=158 Identities=10% Similarity=-0.075 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK---SV------ITWTTMIAGLALHGLGREALDMFSRMERARVK-PN----EITFI 315 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~ 315 (507)
..+..+...|++++|...++...+. +. ..+..+...+...+++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887652 11 13334666677788999999999999874222 23 23688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhC----CCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCC-HHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYG----IEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEAN-AAIW 382 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~ 382 (507)
.+..+|...|++++|+..|+++.+... ..+ ...++..+...|.+.|++++|...+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999885211 111 1347788999999999999999999876 12222 6688
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhc
Q 010575 383 GSLLAASNIYG-DVELGECALQHLIK 407 (507)
Q Consensus 383 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 407 (507)
..+..++...| ++++|...+++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999 57999999999865
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-08 Score=90.00 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888889999999999998887 3333 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHH-HHHHHHHH
Q 010575 425 ILGRWNES-GKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A-~~~~~~~~ 440 (507)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-07 Score=83.42 Aligned_cols=161 Identities=10% Similarity=-0.088 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNK---SV------ITWTTMIAGLALHGLGREALDMFSRMERARV---KPN--EI 312 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 312 (507)
.+...+..+...|++++|.+.+....+. .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788888999888888765431 11 2334456667788899999999998875321 222 35
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-C------CCC-CH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-P------FEA-NA 379 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~~-~~ 379 (507)
+++.+...|...|++++|...|+++.+.....|+ ..++..+...|.+.|++++|...+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732111222 257888999999999999999999876 1 111 25
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 010575 380 AIWGSLLAASNIYGDVELG-ECALQHLIK 407 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 407 (507)
.+|..+...|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 788888865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=83.45 Aligned_cols=124 Identities=7% Similarity=-0.135 Sum_probs=74.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----HHHHHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA----AIWGSLLAASNI 391 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~ 391 (507)
.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|++ ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 3445556667777777777666532 343334445555666777777777777655322322 255566666777
Q ss_pred cCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 392 YGDVELGECALQHLIKLE--PH-NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777777775322 33 3345666677777777777777777777543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.4e-08 Score=76.73 Aligned_cols=104 Identities=7% Similarity=-0.051 Sum_probs=88.2
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 010575 308 KPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 384 (507)
Q Consensus 308 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 384 (507)
.|+ ...+..+...+.+.|++++|+..|+++... -+.+...|..+..+|...|++++|...|+++ ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 443 356777888899999999999999999864 2446888999999999999999999999988 3344 5678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+..+|...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999853
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=82.41 Aligned_cols=137 Identities=14% Similarity=-0.055 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDL 356 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 356 (507)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 445667788888999999988887764 354445555556788889999999999866531 1111 2367778889
Q ss_pred HhhcCCHHHHHHHHhhC-C--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-P--FEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+.+.|++++|+..|++. . ..|. ...+.....++.+.|+.++|..+|+++...+|+ +.++..|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999988 2 2143 346777788899999999999999999999998 66666653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-07 Score=70.90 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444445555555444444 1112 34444445555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHH
Q 010575 428 RWNESGKIRKVMR 440 (507)
Q Consensus 428 ~~~~A~~~~~~~~ 440 (507)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=79.85 Aligned_cols=117 Identities=8% Similarity=-0.060 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 298 MFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 298 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.|+++... .| +...+..+...+...|++++|+..|+.+... -+.+...|..+..+|...|++++|...|+++ ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 34 3356667778888899999999999988863 2446778888889999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
.| ++..+..+..++...|++++|+..|++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 56788889999999999999999999999999988766443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-08 Score=72.86 Aligned_cols=99 Identities=15% Similarity=0.054 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSN 421 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 421 (507)
+...+..+...+...|++++|...++++ .. ..+...|..+...+...|++++|...++++++..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888876 22 236677888888899999999999999999999999 8889999999
Q ss_pred HHHHc-CCchHHHHHHHHHHhCCC
Q 010575 422 IYAIL-GRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 422 ~~~~~-g~~~~A~~~~~~~~~~~~ 444 (507)
++.+. |++++|++.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998875544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=75.46 Aligned_cols=94 Identities=17% Similarity=-0.016 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3344 6778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 010575 427 GRWNESGKIRKVMRDM 442 (507)
Q Consensus 427 g~~~~A~~~~~~~~~~ 442 (507)
|++++|++.+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=75.72 Aligned_cols=102 Identities=11% Similarity=-0.029 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|+++ ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444445555555555555555555442 1223444444445555555555555554444 1122 334444444445
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
...|++++|+..|+++++++|++...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHH
Confidence 55555555555555555555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-07 Score=74.17 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=88.8
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 345 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+...+..+...+.+.|++++|...|+++ ...| +...+..+...+...|++++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4444 678899999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010575 423 YAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.+.|++++|++.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=75.85 Aligned_cols=94 Identities=4% Similarity=-0.089 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG-------NYAI 418 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 418 (507)
..+..+...+.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44566777777888888888888776 3334 5667788888888888888888888888888777553 5667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010575 419 LSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788888888888888887753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=74.13 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555555555555555555554 33444 3455555556666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHH
Q 010575 422 IYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~ 440 (507)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=70.55 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666677777788888888888887753 2335677777788888888888888888776 2233 56788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999888877776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=71.01 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+...|++++|.+.++++ . ...+..++..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999988 2 23467789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
..|++++|.++++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998743
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=73.98 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 345 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777778888888888888888776 2223 567788888888899999999999999999999988899999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010575 423 YAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~ 442 (507)
|...|++++|++.+++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=79.90 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..+..+..+|.+.|++++|...++++ ... .+...+..+..++...|++++|...+++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777788888888888888888877 223 3677888899999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHH
Q 010575 426 LGRWNESG-KIRKVMR 440 (507)
Q Consensus 426 ~g~~~~A~-~~~~~~~ 440 (507)
.|+.+++. ..+..+.
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88887777 4555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=71.98 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 223 46788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010575 424 AILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~ 442 (507)
.+.|++++|.+.+++....
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=77.29 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKR 458 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (507)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888888999999999999999999999999999999999999999999999999988632
Q ss_pred EEEEEeCCCCCCChH-HHHHHHHHHHHHHHhc
Q 010575 459 VHEFVAGDTSHPDFD-RLYQILCKINGQMKFA 489 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 489 (507)
.|++. .+...+..+...+++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 45555 5566777666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=77.34 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=101.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HhhcCCH--
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYL-- 363 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 363 (507)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998887753 3467788888899999999999999999988642 3466778888888 7788998
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 364 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 364 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
++|...++++ ...| +...+..+...+...|++++|...++++++..|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3334 5778888999999999999999999999999999866443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-07 Score=76.14 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=85.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHhhcCCH
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQYGCMIDLLGRAGYL 363 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 363 (507)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..... +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555665533333221 11233455555556666666666666666555421 1111 234455566666666777
Q ss_pred HHHHHHHhhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHHcCC
Q 010575 364 QEAEKLLRRM-P---FEA-N----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH--N----SGNYAILSNIYAILGR 428 (507)
Q Consensus 364 ~~A~~~~~~~-~---~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 428 (507)
++|...+++. . ..+ + ...+..+...+...|++++|...+++++++.+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666654 1 111 2 234566667777778888888888777654321 1 1235677888888888
Q ss_pred chHHHHHHHHHH
Q 010575 429 WNESGKIRKVMR 440 (507)
Q Consensus 429 ~~~A~~~~~~~~ 440 (507)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=72.36 Aligned_cols=111 Identities=7% Similarity=-0.123 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...++++ ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45566667777788888888888887763 2345677778888888888888888888776 3334 567888888889
Q ss_pred HHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLE------PHNSGNYAILSNIYA 424 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 424 (507)
...|++++|...++++++++ |++..++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999888 887777777765543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=74.80 Aligned_cols=107 Identities=9% Similarity=-0.013 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|+.+... .+.+...|..+..+|.+.|++++|...|+++ ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45556667788888899998888888763 2446777888888888899999999988887 2233 566788888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
...|++++|...+++++++.|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998877655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=75.02 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555566666666655554 2222 44455555555556666666666666666666655555666666666
Q ss_pred HcCCchHHHHHHHHHH
Q 010575 425 ILGRWNESGKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~ 440 (507)
+.|++++|++.+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 6666666666555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.9e-06 Score=75.21 Aligned_cols=224 Identities=11% Similarity=-0.018 Sum_probs=106.6
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-CHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS-G-KIG 262 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 262 (507)
.+.+..++|++++..++..+ +-+...++.--..+...| .++++..+++.+.... +.+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444556777777776643 123333444444444445 3566666666655543 34444554444444443 4 445
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 263 KALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 263 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
+++.+++.+.+. |..+|+--.-.+.+.|.++. . ....+.++++.++++.+
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHHHHHH
Confidence 555555555442 23344433333333333330 0 00001144444444443
Q ss_pred hhCCCCChhHHHHHHHHHhhcCC-------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH---------------
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGY-------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV--------------- 395 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------- 395 (507)
. -+-|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 196 ~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 196 V--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp H--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred h--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 2 12234444444444444443 34455544443 2222 444454444444443332
Q ss_pred -----HHHHHHHHHHhcc------CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 396 -----ELGECALQHLIKL------EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 396 -----~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.........+... .+.++.++..|+++|.+.|+.++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222222222 24566788899999999999999999999985
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-05 Score=69.98 Aligned_cols=247 Identities=12% Similarity=0.001 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 147 WNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
++.+.....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++++++.++..+. -+...++.-...+.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 34444444555666889999999885 34567888777888888 59999999999998753 456667666666666
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 223 L-G-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 223 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
. + +++++..+++.+.+.. +.+..+|+.-.-++.+.|.++ ..+. ..+.++++.++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~----------~~~~-------------~~~~eELe~~~ 191 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG----------RISE-------------AQWGSELDWCN 191 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT----------CCCH-------------HHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc----------ccch-------------hhHHHHHHHHH
Confidence 5 6 8899999999998765 556667765555554444433 0000 01134444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH----------
Q 010575 301 RMERARVKPNEITFIAILSACCHVGL-------VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL---------- 363 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------- 363 (507)
++.+..+ -|...|+.....+.+.+. ++++++.++++... .+-|...|+.+-..+.+.|+.
T Consensus 192 k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 4444321 144444444444444333 45555555555542 233445555444444444432
Q ss_pred ----------HHHHHHHhhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHHHHHH
Q 010575 364 ----------QEAEKLLRRM-PF-------EANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAILSN 421 (507)
Q Consensus 364 ----------~~A~~~~~~~-~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 421 (507)
.+..+....+ .. .+++..+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2333333333 11 3577788888888888899999999999985 678876555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-07 Score=71.87 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 010575 310 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 383 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 383 (507)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456667777777778888888888887774 3455 566777788888888888888888776 2233 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
.+..++...|++++|...++++++++|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999999998887777766543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=77.77 Aligned_cols=152 Identities=10% Similarity=-0.031 Sum_probs=86.3
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 010575 257 KSGKIGKALQ---VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER----ARVKP-NEITFIAILSACCHVGLVE 328 (507)
Q Consensus 257 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~ 328 (507)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 33222222334555566666666666666666666544 11111 2245566666677777777
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 010575 329 LGRRYFNIMKSRYGIEP-K----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDV 395 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~ 395 (507)
+|...+++........+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777776654311111 1 234566667777777777777777665 11112 22356677777888888
Q ss_pred HHHHHHHHHHhcc
Q 010575 396 ELGECALQHLIKL 408 (507)
Q Consensus 396 ~~A~~~~~~~~~~ 408 (507)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=82.71 Aligned_cols=117 Identities=12% Similarity=-0.023 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-N----------------AAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
...+..+...+.+.|++++|...|+++ ...| + ...|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345556666777777777777777765 1111 1 267888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
+|+++.++..++.+|...|++++|++.+++.... .|++..++..+..+...+.+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998633 45556677777666666544
Q ss_pred c
Q 010575 489 A 489 (507)
Q Consensus 489 ~ 489 (507)
.
T Consensus 172 ~ 172 (198)
T 2fbn_A 172 A 172 (198)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=74.62 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKL-------EPHNSGNY----AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888999999999999999999988 99999999 9999999999999999999999864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.8e-07 Score=71.84 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777778888888888888877652 335677777788888888888888888888764 24456777788888
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGS--LLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+...|++++|...|+++ ...| +...+.. .+..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888876 2223 4444433 33346777888888888877643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-07 Score=71.40 Aligned_cols=114 Identities=10% Similarity=-0.105 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 386 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 386 (507)
.+...+..+...+...|++++|...|+.+... .+.+...|..+..++...|++++|...++++ ...| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667777788888888888888888888764 2345677888888888888888888888877 2233 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPH-----NSGNYAILSNIYA 424 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 424 (507)
.++...|++++|...+++++++.|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888877 4555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=85.11 Aligned_cols=96 Identities=6% Similarity=-0.040 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----------------AAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
...+..+...|.+.|++++|...|+++ ...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445566666666667777777666665 22222 4788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+++.++..++.+|...|++++|+..|++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=84.28 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888999999999999999887 3333 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHH-HHHHHH
Q 010575 425 ILGRWNESGK-IRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A~~-~~~~~~ 440 (507)
+.|+++++.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 455554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-07 Score=69.19 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 417 (507)
...+..+...+...|++++|...|+++ . ...+...+..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777788888888888888776 2 23366778888889999999999999999999888776 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.++.++.+.|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999874
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=83.51 Aligned_cols=94 Identities=11% Similarity=-0.049 Sum_probs=45.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMY 121 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (507)
.+..+...+...|++++|+..|++..+. .| +...|..+...+...|++++|...++..++..+. +...+..+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444444555555555555555555442 12 3334444444555555555555555555444321 344444555555
Q ss_pred HhcCChHHHHHHHHhccc
Q 010575 122 ASCKCIYDARKVFDELSL 139 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~ 139 (507)
...|++++|...|++...
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=71.48 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PFEAN-A---AIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYA 424 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 424 (507)
+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555566666666666554 11121 1 355556666666677777777777776666666 455666677777
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
+.|++++|++.++++..
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=89.06 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=96.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 395 (507)
...+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999988864 2335788888899999999999999999887 3344 677889999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 010575 396 ELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKV 438 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 438 (507)
++|+..+++++++.|++..++..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999999883
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-07 Score=69.14 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI 391 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 391 (507)
+..+...+.+.|++++|+..|+++.+. .+.+...|..+..++...|++++|+..|+++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556677888888888888888763 2346777888888888888888888888877 3344 56678888888999
Q ss_pred cCCHHHHHHHHHHHhccCCCCC
Q 010575 392 YGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-05 Score=69.16 Aligned_cols=162 Identities=8% Similarity=-0.039 Sum_probs=83.3
Q ss_pred HhCCChh-HHHHHHHHHhHCCCCCCHH-HHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 186 AQMDQPN-EAITLFRRMQVENVKPDEI-AMLAALSACAQLGA----------VELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 186 ~~~~~~~-~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
.+.|.++ +|+.++..++..+ |+.. .++.--..+...+. ++++..+++.+.... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445544 6677777776643 3322 22222122211111 455666666666554 445566665555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 010575 254 MYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITFIAILSACCHV--- 324 (507)
Q Consensus 254 ~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 324 (507)
++...+ .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++..+ -|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhc
Confidence 555555 36666666666654 344566655555556665 3667777776666532 2445555444333322
Q ss_pred -----------CcHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 010575 325 -----------GLVELGRRYFNIMKSRYGIEPKIEQYGCM 353 (507)
Q Consensus 325 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (507)
+.++++++.++..... .+-|...|+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3455566666665542 23344455433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-07 Score=70.23 Aligned_cols=111 Identities=5% Similarity=-0.062 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWG 383 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~ 383 (507)
.+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666543 2334555666666666666666666666655 11 122 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.+..++...|++++|...++++++..|+ +.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 7888888888999999999988888884 66666666555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=66.86 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=49.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC----CCC----HHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWGSL 385 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~l 385 (507)
..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33444444444444444444444432 1222344444444444444444444444443 10 011 1345666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
..++...|++++|++.|+++++..|+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67777788888888888888777765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=66.68 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLA 387 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~ 387 (507)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++ ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667788888888888777641 2222 46667777788888888888888776 22232 566778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
++...|++++|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88999999999999999999999876655544433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-05 Score=68.98 Aligned_cols=216 Identities=14% Similarity=0.026 Sum_probs=154.5
Q ss_pred ccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 222 QLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK----------IGKALQVFENMKN---KSVITWTTMIAGLA 287 (507)
Q Consensus 222 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 287 (507)
+.|.+ ++|..+.+.+...+ +-+..+|+.--.++...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 57888888888765 4455566654444443333 5778888887765 46678888777777
Q ss_pred HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc----
Q 010575 288 LHG--LGREALDMFSRMERARVKPNEITFIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---- 360 (507)
Q Consensus 288 ~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 360 (507)
..+ .+++++.+++++.+... -|..+|+.-...+...|. ++++++.++.+.+. -+-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 777 48999999999998643 377788777777777787 58999999999974 355677787776666554
Q ss_pred ----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 361 ----------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY-----------GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 361 ----------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
+.++++++.++++ ...| |...|+-+-..+... +.++++++.+++++++.|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578899988877 3334 677787666655544 4589999999999999999854444
Q ss_pred HHHHHH---HHcCCchHHHHHHHHHHh
Q 010575 418 ILSNIY---AILGRWNESGKIRKVMRD 441 (507)
Q Consensus 418 ~l~~~~---~~~g~~~~A~~~~~~~~~ 441 (507)
.++... ...|..+++..++.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 443322 235778889999999874
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=71.86 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHhhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 360 AGYLQEAEKLLRRM-PF---EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
.|++++|+..|+++ .. .| +...+..+..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666555 22 13 234556666666667777777777777777777766677777777777777777777
Q ss_pred HHHHHH
Q 010575 435 IRKVMR 440 (507)
Q Consensus 435 ~~~~~~ 440 (507)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=65.75 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIWGSLLA 387 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~ 387 (507)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555666777777777777777777753 2335666777777777888888888887776 2233 4677788888
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCC
Q 010575 388 ASNIY-GDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 388 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888888754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=82.54 Aligned_cols=146 Identities=11% Similarity=-0.078 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ ....|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 45666777777888888888888887764 344331 22334444433221 12367788889
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHcCCchHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY-AILGRWNESG 433 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 433 (507)
|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3334 6778999999999999999999999999999999999999888774 4556778888
Q ss_pred HHHHHHHhC
Q 010575 434 KIRKVMRDM 442 (507)
Q Consensus 434 ~~~~~~~~~ 442 (507)
++++++...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=81.02 Aligned_cols=90 Identities=9% Similarity=-0.044 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...|..+..+|.+.|++++|...++++ ...| +...|..+..+|...|++++|+..++++++++|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888899999999999999999987 5455 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHH
Q 010575 424 AILGRWNESGKI 435 (507)
Q Consensus 424 ~~~g~~~~A~~~ 435 (507)
.+.++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=69.87 Aligned_cols=127 Identities=12% Similarity=-0.022 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAI 381 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~ 381 (507)
+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444432100011 124445555555566666665555544 10111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..+...+...|++++|...++++++..+. ...++..++.++...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566667777788888888888877654221 23467788888888888888888888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=81.80 Aligned_cols=162 Identities=3% Similarity=-0.216 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hhH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERAR-VKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPK-IEQ 349 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~ 349 (507)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776654421 11111 122233334455677888887777765421 22222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----Cc
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-----P--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH---N----SG 414 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~ 414 (507)
+..+...|...|++++|..+++++ + .++ ...++..++..|...|++++|..++++++...+. . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888887765 1 122 2346777778888888888888888888654322 1 13
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777888888888776664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-06 Score=81.17 Aligned_cols=94 Identities=6% Similarity=-0.034 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----------------AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|..+...|.+.|++++|...|+++ ...|+ ...|..+..+|.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4444555555555555555555544 11111 568889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 412 NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 412 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++.+|..++.+|...|++++|+..|++..+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999743
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.9e-07 Score=72.01 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-GNYAILSNI 422 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 422 (507)
+...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...++++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888888999999999999999887 3334 677899999999999999999999999999999987 445555544
Q ss_pred HH
Q 010575 423 YA 424 (507)
Q Consensus 423 ~~ 424 (507)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=80.16 Aligned_cols=111 Identities=8% Similarity=-0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA-NAAIWGSLLAASN 390 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 390 (507)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++. ...| +...|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777766421 0000 000111111 0122 4567888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 391 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+.|++++|+..++++++++|+++.++..++.+|.+.|++++|++.+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-07 Score=70.23 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYA 417 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 417 (507)
+...+..+...+.+.|++++|.+.|+++ ...| +...|..+..++...|++++|+..+++++++.|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888877 3233 67788889999999999999999999999999998 77788
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++.++...|++++|++.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888888888877666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.4e-07 Score=70.19 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=72.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCC-----C-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-------CC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEP-----K-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-------EA 377 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~ 377 (507)
.....+.+.|++++|+..|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555556666655555554311100 1 226777777777777777777777665 33 77
Q ss_pred CH-HHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 378 NA-AIW----GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 378 ~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
+. ..| .....++...|++++|+..|++++++.|++......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 54 478 889999999999999999999999999998877665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-05 Score=77.67 Aligned_cols=169 Identities=8% Similarity=-0.056 Sum_probs=132.1
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGL----------GREALDMFSRMERARVKPNEITFIAILSACCHVG- 325 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g- 325 (507)
..++|.+.++.+.. .+..+|+.-...+...|+ ++++++.++++.+... -+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 34566777777664 244567666666666666 8899999999888643 36678887777777888
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC-CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---------
Q 010575 326 -LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY--------- 392 (507)
Q Consensus 326 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------- 392 (507)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999974 2446788888777888888 899999999888 4445 677888877777663
Q ss_pred -----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 393 -----GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 393 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+.++++++.+++++.++|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-07 Score=69.14 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=65.1
Q ss_pred cCcHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
.|++++|+..|+++.+. + -+.+...+..+..+|...|++++|...|+++ ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 1 1223566777777888888888888888776 2233 5667888888888999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 010575 400 CALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~ 417 (507)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888765443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-06 Score=80.23 Aligned_cols=115 Identities=9% Similarity=-0.116 Sum_probs=55.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+.+.|++++|+..+++..+.. +.+..++..+..++.+.|++++|+..++++.+. .+.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 344555555555555555431 123455555555555666666666666555542 22234555555556666666666
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010575 366 AEKLLRRM-PFEA-NAAIWGSLLAA--SNIYGDVELGECALQ 403 (507)
Q Consensus 366 A~~~~~~~-~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (507)
|.+.|+++ ...| +...+..+..+ +...|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 1112 22233333333 555566666666666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-05 Score=73.08 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=97.7
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPD----------------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-TI 244 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 244 (507)
...+.+.|++++|++.|....+...... ...+..+...|...|++++|...+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778888888888888877542211 123455666666677777776666655442111 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--
Q 010575 245 V----PLNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA--RV-- 307 (507)
Q Consensus 245 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 307 (507)
. .+.+.+...+...|+++.|..++..... .+ ..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222222333344566666665554432 01 234555566666666666666666555431 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCC-C-C--hhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 308 KPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY-GIE-P-K--IEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 308 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
.+. ..++..++..|...|++++|..++++..... ... | . ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1345555555666666666666665554321 111 1 1 123444445555556666665555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-06 Score=67.73 Aligned_cols=132 Identities=11% Similarity=-0.016 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 348 (507)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++........++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555566666555555443210 011 134555666666667777777766665542111111 33
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+..+...+...|++++|...+++. +... ....+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4556666677777777777776655 1111 13456677778888888888888888887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=77.87 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
...+..+...+.+.|++++|...|+...+.+.... .+...++..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788888999999999999998765222111 1222333344433221 13677888899999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECA 401 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~ 401 (507)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 2446788899999999999999999999988 55564 3445555544 3455678888999
Q ss_pred HHHHhccCCCCC
Q 010575 402 LQHLIKLEPHNS 413 (507)
Q Consensus 402 ~~~~~~~~p~~~ 413 (507)
|+++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-06 Score=60.68 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..+..++...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999999999999999999999999999999998864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-05 Score=76.60 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=98.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYG--IEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWG 383 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~ 383 (507)
.+..+|++++|+.++++..+... +.| ...+++.|..+|...|++++|..+++++ +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988776421 222 2467888999999999999999988876 234443 4688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 384 SLLAASNIYGDVELGECALQHLIK-----LEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.|...|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999965 67887664 4578888889999999999999997543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.6e-06 Score=58.78 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+...|++++|...+++. ... .+...+..+..++...|++++|...++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777778888888888888776 222 356678888888899999999999999999999998888888888887
Q ss_pred HcC
Q 010575 425 ILG 427 (507)
Q Consensus 425 ~~g 427 (507)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.9e-07 Score=69.30 Aligned_cols=83 Identities=6% Similarity=0.046 Sum_probs=57.2
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD----------VELGECALQHLIKLEPHNSGNYAILSNIYAILG- 427 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 427 (507)
+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444444 2222 44444444444444443 569999999999999999999999999998875
Q ss_pred ----------CchHHHHHHHHHHhCC
Q 010575 428 ----------RWNESGKIRKVMRDMG 443 (507)
Q Consensus 428 ----------~~~~A~~~~~~~~~~~ 443 (507)
++++|++.|++..+.+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999887543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=60.07 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=62.6
Q ss_pred HHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 365 EAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 365 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+|...|+++ ...| +...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|+..+++...
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3334 5677888888889999999999999999999999888999999999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-05 Score=57.75 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++...|..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678889999999999999999999999999999999999999999999999999999998743
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-05 Score=76.48 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=88.0
Q ss_pred HHhhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHH
Q 010575 356 LLGRAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---NYA 417 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 417 (507)
.+..+|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++|. .++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 23333 34789999999999999999999999965 5677655 678
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
.|+.+|..+|++++|+.++++....-. ...| ..||...++..++++...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863211 1112 568988888888877665444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=55.02 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457788888999999999999999999999999999999999999999999999999999874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.3e-05 Score=57.97 Aligned_cols=112 Identities=10% Similarity=-0.111 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGEC 400 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 400 (507)
+++++|...|++..+. + .|... |...|...+.+++|.++|++.-...++..+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3455666666665543 2 22221 555555555566666666655223455566666666665 567777777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
.|+++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77776554 345667777777776 6777777777777665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=55.32 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.+++..+..+..++...++ .++|..+++++++.+|+++.++..++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577788888888765555 79999999999999999999999999999999999999999999986654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.1e-06 Score=64.81 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC----------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 392 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 392 (507)
+.+++|...++...+. -+.+...|..+..++...|+ +++|+..|+++ .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455555555555542 12344555555555555444 34666666665 3344 445666677776655
Q ss_pred -----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 393 -----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 393 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
|++++|+..|+++++++|++......+- ..++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCcccccc
Confidence 5899999999999999999754333321 2345555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=73.62 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=88.0
Q ss_pred HHHHhhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---h
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---N 415 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 415 (507)
+..+.+.|++++|..++++. +..|+ ..+++.++.+|...|++++|+.+++++++ .+|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778888888888765 11222 34788889999999999999999999864 4566655 6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
+..|+.+|..+|++++|+.++++..+.-. ...| ..||...+++..|.+...+|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTHG-----------------REHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcC-----------------CCChHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999863211 1112 5689888988889888877763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00035 Score=68.67 Aligned_cols=151 Identities=13% Similarity=0.020 Sum_probs=121.9
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 290 GLGREALDMFSRMERARVKP-NEITFIAILSACCHVGL----------VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
...++|++.++++... .| +...|+.--.++...|+ +++++..++.+.+. .+-+..+|..-.-++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999986 44 44566655555555555 89999999999974 3556788888888888
Q ss_pred hcC--CHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-------
Q 010575 359 RAG--YLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYG-DVELGECALQHLIKLEPHNSGNYAILSNIYAIL------- 426 (507)
Q Consensus 359 ~~g--~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 426 (507)
+.| +++++++.++++ .. ..+...|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 33 347888998888888999 899999999999999999999999999998884
Q ss_pred -------CCchHHHHHHHHHHhCCC
Q 010575 427 -------GRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 427 -------g~~~~A~~~~~~~~~~~~ 444 (507)
+.++++++++++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 557899999988765443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-05 Score=55.69 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
..+.+.|++++|...|+++ ...| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555544 1122 333 444455555555555555555555555555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=8.9e-05 Score=57.52 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 377 ANAAIWGSLLAASNIYG---DVELGECALQHLIKLE-P-HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
++..+...+.+++.+.+ +.++++.+++..++.+ | ++...+..|+-+|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666666667776666 5557777777776666 5 3456667777777777777777777777752
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 492 (507)
.+|++.....+...+.+.+++-|..
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666666666666643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.81 E-value=8e-05 Score=55.87 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=53.8
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
|+..|+++.+ ..+.+...+..+...|...|++++|...|+++ ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555553 22334566667777777777777777777766 2223 456777777788888888888888888877
Q ss_pred cCCC
Q 010575 408 LEPH 411 (507)
Q Consensus 408 ~~p~ 411 (507)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3e-05 Score=73.02 Aligned_cols=83 Identities=13% Similarity=-0.056 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHHHHH
Q 010575 359 RAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---NYAILS 420 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 420 (507)
..|++++|..++++. +..|+ ..+++.+..+|...|++++|+.+++++++ ++|+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888877765 22333 35788899999999999999999999964 4666665 688999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010575 421 NIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999863
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-07 Score=86.72 Aligned_cols=250 Identities=15% Similarity=0.060 Sum_probs=128.0
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010575 25 FSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
++++|.+.-++...|. .|..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-.+.+....+
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444444444433332 2455555555555555554433211 2344455555555555555555555444333
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC------------
Q 010575 105 TGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE------------ 172 (507)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------ 172 (507)
..-+| .+=+.|+-+|++.++..+-.+++. +||..-...+.+-|...|.++.|.-+|..+..
T Consensus 112 ~~ke~--~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 112 KARES--YVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp TCCST--TTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred Hhccc--ccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 32222 222345555555554332221111 33444444445555555555555444444331
Q ss_pred ------------CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 010575 173 ------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240 (507)
Q Consensus 173 ------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 240 (507)
.++.+|..+-.+|...+++.-|--.--.+.- .|| ....++..|-+.|.+++.+.+++.-....
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 3567788888888888887766544333321 111 11234555677777777777777665322
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----K-------SVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
.....+++.|.-.|++- ++++..+.++.... | ....|.-++-.|.+..+++.|.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 45567777777777764 44555554443332 1 3346777777777777777664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0007 Score=52.61 Aligned_cols=112 Identities=6% Similarity=-0.115 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 365 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 365 (507)
+++++|+..|++..+.| .|+.. |...|...+.+++|.+.|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 667777778888899999998874 467778888888887 789999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEP 410 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 410 (507)
|.++|++.-...++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988334678888889888888 8999999999999987653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=53.18 Aligned_cols=66 Identities=6% Similarity=-0.091 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+...+..+...|...|++++|...|+++ ...| +...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566777777777777777777777776 2233 4557777777888888888888888888776554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=49.57 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIE-QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 393 (507)
....+...|++++|+..|+++.+. .+.+.. .+..+..+|...|++++|.+.|+++ ...|+ ...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 344555667777777777776653 122345 6666666677777777777777665 22232 222211 4
Q ss_pred CHHHHHHHHHHHhccCCCC
Q 010575 394 DVELGECALQHLIKLEPHN 412 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~ 412 (507)
.+.++...+++....+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555666666665555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0036 Score=56.58 Aligned_cols=137 Identities=11% Similarity=-0.020 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHhHH
Q 010575 274 KSVITWTTMIAGLA--LHG---LGREALDMFSRMERARVKPN-EITFIAILSACCH---VG-----LVELGRRYFNIMKS 339 (507)
Q Consensus 274 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~ 339 (507)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 346788888888875 454 3444444443320 00 01111111111111
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
....+.++..|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0022445556666555555566666666666666 334565556566666666667777777666666666663
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00088 Score=63.06 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=72.2
Q ss_pred ccCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HHHHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRY--GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWGSLL 386 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~ 386 (507)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..+++++ +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888988888876532 12222 367888899999999999999988876 234444 4688999
Q ss_pred HHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 010575 387 AASNIYGDVELGECALQHLIK-----LEPHNSGNYA 417 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 417 (507)
..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999965 5788775443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0018 Score=61.00 Aligned_cols=101 Identities=12% Similarity=-0.082 Sum_probs=75.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRY--GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AI 381 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~ 381 (507)
+..+.+.|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445567788999998888887531 12222 356788888899999999999888876 234433 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIK-----LEPHNSGNYAI 418 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 418 (507)
++.|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999964 67888765443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.17 Score=49.78 Aligned_cols=113 Identities=13% Similarity=0.019 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
+.+.|...|....... ..+.. ....+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6678888887775432 22322 2223333344445344555555554432 23333333344445567888888
Q ss_pred HHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 367 EKLLRRMPFEA--NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 367 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
...|+.|+..+ .....-=+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888884332 222222234466677888888888888764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0017 Score=47.37 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-----P----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..-+..+...+.+.|++..|...|+.+ + ..+....+..+..++.+.|++++|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 333445566666666666666666554 0 1235668889999999999999999999999999999877766
Q ss_pred HHH
Q 010575 418 ILS 420 (507)
Q Consensus 418 ~l~ 420 (507)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=56.99 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=67.6
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHc-CCchH
Q 010575 363 LQEAEKLLRRM-PFEAN---AAIWGSLLAASNI-----YGDVELGECALQHLIKLEPHN-SGNYAILSNIYAIL-GRWNE 431 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 431 (507)
..+|...++++ .+.|+ ...|..+...|.. .|+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 44555 4567777777777 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 010575 432 SGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 432 A~~~~~~~~~~~~~~~~~ 449 (507)
|.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998776654444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.047 Score=56.43 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=95.8
Q ss_pred HHHHccCCcHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGRE-IHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 162 (507)
......++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHH
Confidence 33445677777765 4311 11 1222366777788888888888766421 112345567888999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 163 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+....+.+.....|.
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 88887766 3567888999999999999999999888753 23344445556666665555555444431
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
++.-..+|.+.|++++|.++|..
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333445566676666665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0026 Score=47.35 Aligned_cols=64 Identities=9% Similarity=-0.105 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVEL---GECALQHLIKLE-P-HNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+-..+.+++.+..+... ++.+++..++.+ | ........|+-++.+.|++++|.++++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444443333 455555544443 3 223344445555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=49.98 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 010575 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...+.+.|.+.... + +++..+...+..++++.+ +.++++.+++.. ... | +...+..+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555554442 2 356666666666677666 455777776665 222 4 3456677888899999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 010575 400 CALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~ 417 (507)
++++.+++++|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999755443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0062 Score=55.06 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHh--cc---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhh---cC-----C---HHHHHHHH
Q 010575 308 KPNEITFIAILSACC--HV---GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGR---AG-----Y---LQEAEKLL 370 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~~ 370 (507)
+.+...|...+++.. .. .+..+|..+|+++.+. .|+ ...|..+..+|.- .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 456667777766533 33 3468899999999964 565 3444444333321 11 1 11222222
Q ss_pred hhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 371 RRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 371 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..+ ....++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++....+.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233 23457778888888888889999999999999999976 66778999999999999999999998865443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0065 Score=43.10 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 344 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566677777777654444 68888888877 3344 56677777888888999999999999999888883
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.077 Score=39.59 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467778888888877763 24556666666555666666667777666543222 23455555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
....+-.+. .+....+..+......|.-+.-.+++..++...|.++.++..++.+|.+.|+..+|.+++++.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 355566777788889999999999999977777777999999999999999999999999999888884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0086 Score=43.59 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLE-------PHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..++..+...|++..|...++.+++.. +..+.++..|+.+|.+.|++++|+.++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45566778889999999999999999997642 33456899999999999999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.025 Score=58.49 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=74.7
Q ss_pred HhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 256 AKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 256 ~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
...+++++|.+ ++..+. +......++..+.+.|..++|+++.+ +... -.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHHHHHHHH
Confidence 34566666665 443322 01122455555666666666665442 1110 012234456777776664
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+.+ .+...|..+...+.+.|+++.|.+.|.+++. |..+...+...|+.+...++.+.+...+
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~----- 737 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG----- 737 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-----
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 322 3556677777777777777777777776641 2333333444555544444433332211
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
-+.....+|.+.|++++|++++.++
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233333444455555555555444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.053 Score=41.09 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
.|+..+--.+.+++.+..+ ..+++.+++..++..|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 4666666667777766654 34677777777776664 344556677777777777777777777762
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 492 (507)
..|++..+..+..-+.+.+.+-|..
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3566666666767777777766643
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.44 E-value=2.7e-06 Score=78.12 Aligned_cols=242 Identities=10% Similarity=0.023 Sum_probs=163.5
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGY 154 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~ 154 (507)
.+..|..|..+....+...+|.+-| ++. .|+..|..++.+..+.|++++-.+.+...++..-+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4567889999998888888876544 222 2566788999999999999999999988877644666667999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC--------------------CCCCHHHHH
Q 010575 155 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--------------------VKPDEIAML 214 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~ 214 (507)
++.+++.+-++++. .|+..-...+..-|...|.++.|.-+|..+.... -..+..||.
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 99999876554433 3666666677778888888887776665442211 123566888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGL 291 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 291 (507)
.+-.+|...+.+..|...--.++-..-. ...++..|-..|.+++-+.+++.-. +.....|+-|.-.|++- +
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 8888898888887775554444422111 1246666888899888888887654 35667888888888876 4
Q ss_pred hHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCcHHHHH
Q 010575 292 GREALDMFSRMERARVKPN-------EITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~a~ 331 (507)
+++.++.++..-.+=-.|. ...|.-++-.|.+-.+++.|.
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666654332211121 223555555555556666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.023 Score=42.40 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
.|++.+--.+.+++.+..+ ..+++.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL----------- 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4666666667777766654 34677777777777763 35566677778888888888888888776
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAE 490 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 490 (507)
...|++..+..+..-+.+.+.+-|
T Consensus 106 ---------------~~eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 106 ---------------EHERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ---------------TTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hhCCCCHHHHHHHHHHHHHHHhhc
Confidence 346666677777666666666543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.18 Score=40.05 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHH
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGR 96 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 96 (507)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... |..+.-.|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34455677778777777655 3456677888777788888877777777654 455555566667766655
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
.+-+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5544444433 1 334444555567777776666544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.079 Score=39.43 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE---AEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 397 (507)
.....+.+.|...... + .++..+-..+..++++..+... ++.+++.. ... | .......+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555443 3 2666666667777777776555 77777766 222 3 23345567778999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~ 418 (507)
|.+.++.+++..|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999998665443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.38 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010575 157 VGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 201 (507)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444443333 23344555555555555555555555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.083 Score=52.95 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...|...|+++.|+.+.++++...|.+..+|..|+.+|.+.|+|+.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457789999999999999999999999999999999999999999999999986
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.62 E-value=2.4 Score=43.53 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCCCC--------------cccHHHHHHHH----HcCCCch----HHHHHHHHHHH
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSKPD--------------VYLYNTTIKAL----CQTDNPL----NAVILYNKIQA 69 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~li~~~----~~~~~~~----~a~~~~~~m~~ 69 (507)
+...++..|.+.+...+|..+.-+..+-| ...|..++..+ ...-.++ +.+++.-.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 45667778888888888888876655411 13343333322 1122222 22222222222
Q ss_pred cCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010575 70 SALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 70 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
. + + ..-|..+++.+.+.++.+.+.++|..+..
T Consensus 227 k-~-~-~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 N-M-P-NCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp H-S-S-SCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred h-C-C-chhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 1 22477788888899999999999998763
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.33 E-value=3 Score=42.83 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-ChhH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCc
Q 010575 252 IDMYAKSGKIGKALQVFENMKNK-SVIT--WTTMIAGLALHGLGREALDMFSRMERARVKPNEIT--FIAILSACCHVGL 326 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~ 326 (507)
...+...|+.+....++..+.+. +... .-.+.-++...|+.+.+..+.+.+... ..|.... ...+.-+|+..|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 33344555555555555543321 1111 122223333455655555555555542 1111111 1122334555566
Q ss_pred HHHHHHHHHHhHH
Q 010575 327 VELGRRYFNIMKS 339 (507)
Q Consensus 327 ~~~a~~~~~~~~~ 339 (507)
.....+++..+.+
T Consensus 576 ~~aIq~LL~~~~~ 588 (963)
T 4ady_A 576 NSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.11 Score=39.63 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHhHHhhCCCCChh-HHHHHHHH------HhhcCCHHHHHHHHhhC-C-
Q 010575 310 NEITFIAILSACCHVGLV------ELGRRYFNIMKSRYGIEPKIE-QYGCMIDL------LGRAGYLQEAEKLLRRM-P- 374 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~-~- 374 (507)
|..+|-..+....+.|++ ++..++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444555555544445555 555666666655 4444321 11111111 12346677777777666 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 375 FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.+.=...|.....--.+.|+...|.+++.++++..|.....+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 111266777777777888999999999999988888754333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.16 Score=44.03 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCC--CC---hhHHHHHHHHHHhC-----CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc-CCHHHH
Q 010575 161 NNARALFELMTE--KN---VISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-GAVELG 229 (507)
Q Consensus 161 ~~A~~~~~~~~~--~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a 229 (507)
..|...+++..+ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 445555555543 22 34666666666663 67777777777766643211244555555656553 667777
Q ss_pred HHHHHHHHHcCCC
Q 010575 230 EWIHNYIEQYGLN 242 (507)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (507)
...+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777776665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.31 Score=37.32 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCcccHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCCccc----HHHHHHH---HHccCCcHHHHHHHHHHHH
Q 010575 38 KPDVYLYNTTIKALCQTDNP------LNAVILYNKIQASALRPDNYS----FPFVLKA---VVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 38 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l~~~---~~~~~~~~~a~~~~~~~~~ 104 (507)
..|..+|-..+..+-+.|++ ++.+++|++... .++|+... |..+--- +...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677788888888777888 788888887776 35554321 2211111 1234788888888888877
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHH
Q 010575 105 TGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMV 151 (507)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li 151 (507)
.+-.- ..+|....+.-.+.|++..|.+++.......| +.......+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 63333 66666666777788888888888888777655 333343333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=1.3 Score=33.19 Aligned_cols=138 Identities=9% Similarity=-0.042 Sum_probs=72.9
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALF 167 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 167 (507)
-.|..++..++..+..+.. +..-+|-+|.-....-+-+-..++++.+-... |.. .+|++......+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Dis----------~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLD----------KCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGG----------GCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc-CcH----------hhhcHHHHHHHH
Confidence 4455666666666655542 34445555554455555555555555544321 111 123333333333
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 168 ELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
-.+.. +....+.-+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32221 3334455556666677777777776665432 355666666667777777777777666666666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.18 E-value=4.2 Score=35.85 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=101.9
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH--
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL-- 197 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-- 197 (507)
.-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ~~R-------------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-------------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHTCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-------------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 3344566656655544 344456777777777776543 22344556666555443
Q ss_pred --HHHHhHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010575 198 --FRRMQVENVKPDEIAMLAALSACAQLGAVE-LGEWIHNYIE----QYG--LNTIVPLNNALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 198 --~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 268 (507)
++...+.+.+++......++..+.....-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 444555677788777777777765533111 1123333333 332 1246677888899999999999999888
Q ss_pred HhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 269 ENMKNKSVITWTTMIAGLALH---GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
-.-...+...+..++--+... |...++ +...-..++ .|.-.|+...|..+|+...+.
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 633322444444444333332 222221 111112222 344568899998888877654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.31 Score=48.84 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHcCCCCCcccHH--HHHHHHHccCC-cHHHHHHHHHHHHc------CCCC-cH--
Q 010575 45 NTTIKALCQTDN-PLNAVILYNKIQASALRPDNYSFP--FVLKAVVKLST-IELGREIHCQTVGT------GLDS-DV-- 111 (507)
Q Consensus 45 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 111 (507)
..++..+...++ .+.|+.+|+++.... |....+. .++..+...++ --+|.+++.+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555556666 477999999998853 5433322 22333323322 22344444444321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 112 --------HVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 112 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
.....=++.+...|+++-|+++-++.....| +..+|..|..+|...|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234557778999999999999988888 68899999999999999999999999987
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.39 Score=44.42 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCCc
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMPG 449 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 449 (507)
...++.++...|++++|...++.++..+|-+...+..++.+|.+.|+..+|++.|+.+. +-|+.+.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566677888999999999999999999988899999999999999999999988875 346665544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.79 E-value=6.7 Score=34.87 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMD 189 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 189 (507)
|......+...|.+.+++.+|...|-.-.++++..+..++..+...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 44444455555555555555555553222222244444444443333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.92 Score=35.45 Aligned_cols=53 Identities=9% Similarity=-0.034 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-----KSV-------ITWTTMIAGLALHGLGREALDMFSRME 303 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 303 (507)
-+..+...|.++.|+-+.+.+.. ++. .++..+..++...+++..|...|++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35556666777777666554331 221 144455566666666666666666653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.30 E-value=9.7 Score=35.77 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHC--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVE--NVKPD---EIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
..|...|...|++.+|.+++..+... |.... ...+...++.|...+++..|..++..+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666677777777777777776532 11111 123444555566666666666655554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.26 E-value=2.8 Score=32.74 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=32.1
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCc-------ccHHHHHHHHHccCCcHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQAS-ALRPDN-------YSFPFVLKAVVKLSTIELGREIHCQTV 103 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 103 (507)
.+-.-++.+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344455556666666666655554432 112332 133445556666666666666666654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.17 E-value=5.3 Score=32.48 Aligned_cols=178 Identities=9% Similarity=0.032 Sum_probs=95.9
Q ss_pred hccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH
Q 010575 33 FTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH 112 (507)
Q Consensus 33 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 112 (507)
++.+..+|...-...+..+.+.+..+.. ..+..+.. .++...-...+.++...++.+....+. .+.. .++..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~ 91 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGW 91 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHH
Confidence 3334445544444555555555543333 33333332 245555455556666666544333333 2322 35666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
+....+.++.+.|+.+....+.+.+.. ++...-...+.++.+.++.+....+...+..++...-...+.++.+.|. .
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h
Confidence 667777777777775544444444433 3555556666777777765555555555556676666666666666665 4
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
++...+..+... ++...-...+.++.+.+
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 566666666643 45555555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.00 E-value=1.3 Score=31.05 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.-++.+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677777888888899999999999999999999999999999998764433 455666664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.73 E-value=4.3 Score=30.75 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHhhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 344 EPKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.|+..+-..+..++.+..+. .+++.+++.. ...| .......+..++.+.|++++|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555555566655543 3455555555 2223 23345567778999999999999999999999997543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.67 E-value=3.4 Score=44.38 Aligned_cols=126 Identities=9% Similarity=-0.004 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHH
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLR----VWN--VAVWNTMVAGYAKVGDLNNARALFELMTEKN--VISWTTLIAG 184 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~ 184 (507)
-|..++..+.+.|.++.+.++-....+. .++ ...|..+...+...|++++|...+-.++... ......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3555566666666666555554433221 111 1235556666666666666666665554221 1233334433
Q ss_pred HHh------------CCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHH-HHHHHHHHH
Q 010575 185 YAQ------------MDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELG-EWIHNYIEQ 238 (507)
Q Consensus 185 ~~~------------~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 238 (507)
.+. .|..++..+++....+.. +.....-|..|-.-+...|++.+| .-+|+.+.+
T Consensus 981 lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 981 LTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 333 344455555554432211 111112344444444566666544 455555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.43 E-value=9.2 Score=34.00 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 149 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLF----RRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
++..-|.+.+++++|++++.. -...+.+.|+...+.++- +...+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 334446677777777776543 223345556655544433 44455667777777777777665554
Q ss_pred CHH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 010575 225 AVE-LGEWIHNYIE----QYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 297 (507)
Q Consensus 225 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (507)
.-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-.++++..+..++--+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 311 1122333333 223 234567777888999999999999998853222233555444433333322111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 298 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
++...-..++ -|...+++..|..+++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556788888887766654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.38 E-value=12 Score=35.18 Aligned_cols=205 Identities=10% Similarity=0.088 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHhHC-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 010575 189 DQPNEAITLFRRMQVE-----NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVP--LNNALIDMYAKSGK 260 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~ 260 (507)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788898887666542 34556777888999999999999988877766543 3222211 11222233333333
Q ss_pred H--HHHHHHHHhcCC---CC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhc
Q 010575 261 I--GKALQVFENMKN---KS-------VITWTTMIAGLALHGLGREALDMFSRMERA--RVKPNE---ITFIAILSACCH 323 (507)
Q Consensus 261 ~--~~A~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~ 323 (507)
. +.-..+...+.. .- ......|...|...|++.+|..++.++... |..... ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 223344443332 11 123456788899999999999999998642 322221 345566778889
Q ss_pred cCcHHHHHHHHHHhHHh-hCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 324 VGLVELGRRYFNIMKSR-YGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
.+++.+|..++.++... +...++ ...+...+..+...+++.+|-+.|..+ ...+...++....
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAKW 257 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHHH
Confidence 99999999999887532 122222 234566777777888998888776554 3334445555554
Q ss_pred HHHHHHH
Q 010575 399 ECALQHL 405 (507)
Q Consensus 399 ~~~~~~~ 405 (507)
..++..+
T Consensus 258 ~~~L~~~ 264 (445)
T 4b4t_P 258 KPVLSHI 264 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.22 E-value=1.8 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 56 NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666777777777788888888888888888888888888888776542 333445665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.02 E-value=4.7 Score=30.11 Aligned_cols=73 Identities=14% Similarity=0.012 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHhhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
|++.+-..+..++++..+. .+++.+++.. ...| ....+-.+..++.+.|++++|.++.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444455555554433 3455555554 2223 2345666777888899999999999999999998755433
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.70 E-value=7.4 Score=31.86 Aligned_cols=91 Identities=10% Similarity=0.119 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
+...-...+.++.+.++.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444444444433333333333344544444444444444443 23333434432 2444445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 010575 223 LGAVELGEWIHNYIEQ 238 (507)
Q Consensus 223 ~~~~~~a~~~~~~~~~ 238 (507)
.+.. .+...+..+.+
T Consensus 170 ~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 170 IGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HCSH-HHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHh
Confidence 5553 33333444433
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.62 E-value=7.5 Score=31.82 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=116.2
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHH
Q 010575 24 GFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTV 103 (507)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 103 (507)
++.+....+.+.+..++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+....+ ..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHH-HHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHH
Confidence 34444455555566677776677777777777644 4444444444 25666666677777777765443333 3333
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 010575 104 GTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIA 183 (507)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 183 (507)
-.++..+....+.++.+.|+.+....+.+.+.. ++...-...+.++.+.++.+....+.+.+..++...-...+.
T Consensus 91 ---~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 165 (211)
T 3ltm_A 91 ---KDEDGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 165 (211)
T ss_dssp ---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 246777777888888888876555555554433 366666777777777787665555556566677777677777
Q ss_pred HHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 010575 184 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 225 (507)
Q Consensus 184 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 225 (507)
++.+.+. .++...+..+.+. ++...-...+.++.+.+.
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 7777775 5566667676653 455555666666655543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=18 Score=35.51 Aligned_cols=77 Identities=8% Similarity=-0.092 Sum_probs=45.3
Q ss_pred HHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 14 SRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
+..+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 3445556667777777776665 33344444455666677777766766666665544 23444566666666655544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.79 E-value=10 Score=32.33 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=76.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHhh
Q 010575 284 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMIDLLGR 359 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 359 (507)
....+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788888888888877763 346667777888888899999998888887743 45432 33333332
Q ss_pred cCCHHHHH-HHHhhC--C--CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 360 AGYLQEAE-KLLRRM--P--FEANAAIWGSLLAAS--NIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 360 ~g~~~~A~-~~~~~~--~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+... ++|..- | ......-...++.+. ...|+.++|..+-.++++..|..+...
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1121 122211 1 111223334455554 456899999999999888887765533
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.96 E-value=19 Score=38.65 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC----C------------------C
Q 010575 149 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----N------------------V 206 (507)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~------------------~ 206 (507)
.++..+.+.+..+.+.++...... ++..--.+..+|...|++++|...|++.-.. + .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 455556666666666665544433 3333345566667777777777777554210 0 0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHH
Q 010575 207 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWT 280 (507)
Q Consensus 207 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 280 (507)
..-..-|..++..+.+.+.++.+.++-....+...+.+ ...|..+...+...|++++|...+-.+... -.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 11123477788888888888888888777666542222 125677788888889999988888766543 235667
Q ss_pred HHHHHHHHcCChHHH
Q 010575 281 TMIAGLALHGLGREA 295 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A 295 (507)
.|+..++..|..+.-
T Consensus 976 ~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCHHHH
T ss_pred HHHHHHHhCCChhhh
Confidence 777777777765543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.11 E-value=3.1 Score=31.01 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+..+...-+..+....+.|++......+.+|.+.+|+..|.++|+.++.+.+ +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4456667777777888999999999999999999999999999999987543 33556766664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=3.5 Score=38.03 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQY 350 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 350 (507)
..++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777788888887777776642 34667788888888888888888888877654 34777776553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.10 E-value=4 Score=30.44 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 58 LNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.. ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345555555555566666666666666666666666666666665543 2223444554443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.27 E-value=22 Score=32.52 Aligned_cols=291 Identities=12% Similarity=0.065 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC---CC---ChhhHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHH----
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLR---VW---NVAVWNTMVAGYAKVG-DLNNARALFELMTE---KNVISW---- 178 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p---~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---- 178 (507)
....|...|.+.|+.++..+++.....- .| .......++..+.... ..+.-.++.....+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888887776544 11 2334556666665533 33333444433332 111222
Q ss_pred --HHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhHHH
Q 010575 179 --TTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----EIAMLAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNN 249 (507)
Q Consensus 179 --~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 249 (507)
.-++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+....... +.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2467788888888888888887766421212 1234444555666677777766666554321 212222221
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 010575 250 AL----IDMYA-KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSAC 321 (507)
Q Consensus 250 ~l----~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~ 321 (507)
.+ .-.+. ..+++..|...|-+.. ..|- +.| .| +...|..+....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~----------------~~~-~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF-----------EGFD----------------SVD-SVKALTSLKYMLLCKIM 232 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHT----------------TTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH-----------hccc----------------ccc-cHHHHHHHHHHHHHHHH
Confidence 11 11223 3445555544443210 0010 111 01 112332222222
Q ss_pred hccCcHHHHHHHH-HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 322 CHVGLVELGRRYF-NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 322 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
. ++..+...++ ......+ ..|....+..++.+| +.+++.+...+++.. .+..|+.....+-..+.. --
T Consensus 233 ~--~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir 303 (394)
T 3txn_A 233 L--GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----ML 303 (394)
T ss_dssp T--TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HH
T ss_pred c--CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HH
Confidence 2 2211111222 1211211 245555566666654 556777777777765 233444322111111100 01
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
...+.++. .|-..-.+..++..+.- ..+++...+-+|...|.
T Consensus 304 ~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 EQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 12222332 45555667777766543 67889999988876665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.62 E-value=8.2 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
..+...|++++|..+.+...-||...|..|.. .+.|..+++...+..+..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34555666666666666666677777765543 46677777777666666655 3443333
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.33 E-value=11 Score=30.47 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 393 GDVELGECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 393 g~~~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++...+..+|..+. +++-..+..|...+..+...|++.+|.++|+.-.+.+.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33556666776663 35555566677777777777777777777766665544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.89 E-value=9 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 153 GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
.+...|++++|..+.+...-||...|..|.. .+.|..+++...+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666655543 34555566666555555554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.67 E-value=7.7 Score=33.12 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=34.0
Q ss_pred HHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 010575 86 VVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW 142 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 142 (507)
+.+.|+++.++.....-++..+. |......|+..+|-.|+++.|.+-++...+..|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44556666666666666665433 555666666666666666666666666655544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.62 E-value=11 Score=26.31 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|. -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45666666666665553 3333333455677889999999999999989999887664 4577888888888878877
Q ss_pred CCCCCCHHHHH
Q 010575 305 ARVKPNEITFI 315 (507)
Q Consensus 305 ~g~~p~~~~~~ 315 (507)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.87 E-value=12 Score=26.20 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665553 33333334556778899999999999999999998877644 466888888888877777
Q ss_pred CCCCCCHHHHH
Q 010575 305 ARVKPNEITFI 315 (507)
Q Consensus 305 ~g~~p~~~~~~ 315 (507)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.84 E-value=29 Score=30.55 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM----FSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345667778888888888887643 23345556766655554 455556778888877777777665
Q ss_pred ccCcHH-HHHHHHHHhHH---hhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---C
Q 010575 323 HVGLVE-LGRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY---G 393 (507)
Q Consensus 323 ~~g~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g 393 (507)
....-+ .=.++.+++.+ +.|- .-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11233333321 1121 2367778888899999999999998876321 12455565555554444 4
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...++--. ....+--|.-.|+...|..+++...
T Consensus 183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44433222 1222335556788888888887664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 6e-05
Identities = 38/306 (12%), Positives = 82/306 (26%), Gaps = 9/306 (2%)
Query: 154 YAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 210
+ GD A + + N L + + Q + + + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLL 66
Query: 211 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 270
+ L + H + L +G + A+Q + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 271 MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 330
+ + L + + +A C E+
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 331 RRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMP--FEANAAIWGSLLA 387
+ K+ ++P ++ Y + ++L A A R +A + G+L
Sbjct: 187 LAIHHFEKA-VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 447
G ++L + I+L+PH Y L+N G E+ +
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 448 PGCSYI 453
+ +
Sbjct: 306 DSLNNL 311
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 24/184 (13%), Positives = 59/184 (32%), Gaps = 8/184 (4%)
Query: 249 NALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIA-GLALHGLGR--EALDMFSRMERA 305
L ++ ++ +A+ + + S + G A+D + R
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA--I 264
Query: 306 RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365
++P+ L A + + + + ++ G ++E
Sbjct: 265 ELQPHFPDAYCNL-ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 366 AEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423
A +L R+ F AA +L + G ++ + I++ P + Y+ + N
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 424 AILG 427
+
Sbjct: 384 KEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.87 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.72 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.44 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.43 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.11 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.07 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.5 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.47 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.34 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.42 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.53 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.39 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.7e-24 Score=201.65 Aligned_cols=371 Identities=11% Similarity=0.065 Sum_probs=168.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
..+.+.|++++|++.|+++.+.. | ++..+..+...+.+.|++++|...++..++..+. +..++..+..+|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 34455566666666666665532 3 3444555555556666666666666666555432 445555566666666666
Q ss_pred HHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 128 YDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMT---EKNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
++|...+.......| +...+..........+....+........ .................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 666666665554433 22222333333333333333222222211 12223333334444444444444444444443
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH
Q 010575 204 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWT 280 (507)
Q Consensus 204 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 280 (507)
.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...|....+ .+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 32 1233344444444445555555555555444432 22333444444444444444444444444332 2233444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|+..++.... ..+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHC
Confidence 44444444444444444444444431 11233444444444444444444444444443 2223334444444444444
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
|++++|.+.|+++ ...| +..++..+..++...|++++|+..|+++++++|+++.+|..++.+|.+.|
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4444444444443 2223 23344444444444444444444444444444444444444444444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.3e-24 Score=200.99 Aligned_cols=356 Identities=12% Similarity=0.064 Sum_probs=296.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 160 (507)
+...+.+.|++++|.+.++++++..+. +..++..+..+|.+.|++++|...|+++.+..| +..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 456678899999999999999988643 678888999999999999999999999988877 678899999999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 161 NNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 161 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++|+..+....+ .+...+..........+....+............ ................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988875 3444555566666666777777776666655543 344445556666777888888888888777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
... +.+...+..+...+...|++++|...++...+ .+..+|..+...+...|++++|+..+++..... +.+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 665 45567778888999999999999999987664 456788999999999999999999999988764 4466778
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHc
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 392 (507)
..+...+.+.|++++|+..|+++.+. .+-+..++..+...+...|++++|.+.++.. ..+.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88889999999999999999999863 3445788999999999999999999999887 3345778889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
|++++|+..+++++++.|+++.++..++.+|.+.|++++|++.+++..+..
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.8e-15 Score=137.23 Aligned_cols=243 Identities=12% Similarity=-0.061 Sum_probs=169.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
.....+.+.|++++|+..|++.++.. +-+..++..+..++...|+++.|...+.+..+.. +-+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888887754 2346667777777777778888877777777664 344566666667777777
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 260 KIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
++++|.+.++.....+........ ...... ...+.......+..+...+.+.++...+.++..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVT--------------PAEEGA---GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHH--------------hhhhhh---hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 777777766655432110000000 000000 000001111122233445677788888888776
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.....++...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|++.++++++++|+++.++.
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 5344456778888899999999999999999987 3334 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.++.+|.+.|++++|++.|++..+
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.5e-15 Score=134.59 Aligned_cols=272 Identities=15% Similarity=0.062 Sum_probs=200.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 144 VAVWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
....-.....+.+.|++++|+..|+++.+ | ++.+|..+..++...|++++|...|++..+.. +-+...+..+...+
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 97 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccc
Confidence 33344567788999999999999999875 3 56789999999999999999999999998864 33567788888999
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 221 AQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
...|+++.|...++.+....... .......... .. ..+.......+..+...+.+.+|...+.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-AG---------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHhccch-HHHHHhhhhh-hh---------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 99999999999999988754211 1110000000 00 0011111112223444566778888888
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-
Q 010575 301 RMERARV-KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA- 377 (507)
Q Consensus 301 ~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 377 (507)
+..+... .++...+..+...+...|++++|+..|++.... .+-+...|..+...|...|++++|.+.|+++ ...|
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 8776422 345677888888999999999999999999864 2345788889999999999999999999987 4444
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-----------hHHHHHHHHHHcCCchHHHHH
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG-----------NYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 435 (507)
+..+|..++.+|...|++++|+..|++++++.|++.. .|..+..++...|+.+.+...
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5778999999999999999999999999998888665 345567777777777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.9e-10 Score=104.79 Aligned_cols=261 Identities=14% Similarity=0.026 Sum_probs=176.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL--N---TIVPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~ 250 (507)
.....+...|++++|++++++.++.....+ ...+..+..++...|++++|...+....+... . .....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344556677777777777777766432111 13455566677777777777777776654321 1 11234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-------KS----VITWTTMIAGLALHGLGREALDMFSRMERAR----VKPNEITFI 315 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~ 315 (507)
+...+...|++..+...+..... +. ...+..+...+...|+++.+...+....... ......++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66677778888888777765432 11 1345566777888899999998888876532 222334556
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-----CHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-----NAAIWGS 384 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~ 384 (507)
.....+...+++..+...+............ ...+..+...+...|++++|...+++. ...| ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6666777888888888888776653222211 234556667788899999999999887 2211 2445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIK------LEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..++...|++++|...+++++. ..|....++..++.+|.+.|++++|.+.+++..
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78889999999999999999863 345556788899999999999999999998875
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.8e-09 Score=98.09 Aligned_cols=154 Identities=12% Similarity=-0.009 Sum_probs=84.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC--ChhHHHHH
Q 010575 282 MIAGLALHGLGREALDMFSRMER----ARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCM 353 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 353 (507)
+...+...++..++...+.+... .+..+. ...+..+...+...|+++.|...++.........+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34444455555555555544332 111111 12334444556666777777777666553211111 12334456
Q ss_pred HHHHhhcCCHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---------CchH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM-------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---------SGNY 416 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~ 416 (507)
...+...|++++|...++++ +..|+ ...+..+...|...|++++|.+.+++++++.+.. ...+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 66677777777777777654 22232 3456667777888888888888888887654321 1233
Q ss_pred HHHHHHHHHcCCchHHHHH
Q 010575 417 AILSNIYAILGRWNESGKI 435 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~ 435 (507)
..+...+.+.++.+++.+-
T Consensus 338 ~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 4455566677777777553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.4e-10 Score=100.73 Aligned_cols=221 Identities=8% Similarity=-0.016 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhHCCC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 010575 191 PNEAITLFRRMQVENV-KP--DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQV 267 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 267 (507)
.+.++.-+++.+.... .+ ...++..+..+|.+.|++++|...|++.++.. +.+..++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555555554321 11 12345556667777788888888887777765 45667777888888888888888888
Q ss_pred HHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC
Q 010575 268 FENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE 344 (507)
Q Consensus 268 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 344 (507)
|+++.+ .+..+|..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 887764 345677888888888899999999988887753 224444444444555556555555555554432 2
Q ss_pred CChhHHHHHHHHHhhcCC----HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAGY----LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
+....+. ++..+..... .+.+...+... ...| ...+|..+...+...|++++|...|++++..+|++...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 2222222222 22222222221 1122 2346777888899999999999999999999998754443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.5e-11 Score=111.36 Aligned_cols=230 Identities=7% Similarity=-0.066 Sum_probs=159.1
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLN-NALIDMYAKSGKIGK 263 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 263 (507)
..|++++|+.+++...+.+ +-+...+..+..++...+ +++.+...+..+.+.. +.+...+ ......+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3444566777777766643 234445555555554444 4677777777777664 3334433 344566777888888
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 264 ALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 264 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
|...++.+.+. +..+|+.+...+.+.|++++|...+++..+. .|+. ..+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH-
Confidence 99888887763 5578888888888888888776655544332 1221 1223334455666777777777765
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 341 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
..+++...+..++..+...|+.++|...+.+. +..| +..+|..++.++...|++++|+..++++++++|.+...|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 33455566667778888889999999999877 5555 45577888889999999999999999999999998888888
Q ss_pred HHHHHHH
Q 010575 419 LSNIYAI 425 (507)
Q Consensus 419 l~~~~~~ 425 (507)
|...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.7e-10 Score=100.68 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=132.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 010575 217 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 292 (507)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 292 (507)
...+.+.+..++|...++.+++.. |-+...|+....++...| ++++|+..++...+ .+..+|..+...+.+.|++
T Consensus 50 ~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~ 128 (315)
T d2h6fa1 50 RAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 128 (315)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH
Confidence 333444445555555555555443 334445555555555544 36666666665543 3456777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC------HHHH
Q 010575 293 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY------LQEA 366 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 366 (507)
++|+..++++.+.. +-+...|..+...+...|++++|+..++.+.+. -+.+...|+.+...+.+.+. +++|
T Consensus 129 ~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 129 SQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp TTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 77777777777652 225677777777777777788888877777753 13345666666555554443 5677
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC--chHHHHHHHHHHc--CCchHHHHHHHH
Q 010575 367 EKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS--GNYAILSNIYAIL--GRWNESGKIRKV 438 (507)
Q Consensus 367 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~A~~~~~~ 438 (507)
++.+.++ ...| +...|..+...+.. ...+++.+.++.++++.|+.. ..+..++.+|... +..+.+...+++
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777665 3344 56667766665544 345778888888888777643 3455667776543 444444444433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=1.8e-09 Score=95.97 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-S-VITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
..+.+..+++..++...+.+...+...+..+...|+++.|..+|+.+.+ + + ...|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777777777655455566666777777777777777777777654 1 2 2357777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CC
Q 010575 301 RMERARVKPNEITFIAILS-ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PF 375 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 375 (507)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.++..|...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77765322 3333333332 233456777777777777764 2445667777777777777777777777765 22
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 376 EA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 376 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.| ....|...+..-...|+.+.+..+++++.+..|+..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 33 234666666666677777777777777777666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.9e-09 Score=95.88 Aligned_cols=209 Identities=11% Similarity=0.050 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDM 254 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (507)
.+|+.+...+.+.+.+++|+++++++++.+ +-+...|.....++...| ++++|...++.+.+.. +-+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 456666677777788888888888887753 234455666666666655 4788888888777765 5567777777888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------
Q 010575 255 YAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG------ 325 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------ 325 (507)
+.+.|++++|+..|..+.+ .+..+|..+...+...|++++|+..++++++.. +-+...|+.+...+.+.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 8888888888888887765 456788888888888888888888888888753 225566666555544433
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHH
Q 010575 326 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASN 390 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~ 390 (507)
.+++|+..+..+.+. .+.+...|..+...+...| .+++.+.++.. +...+...+..++..|.
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 367788888777753 2345666766666554433 45555555544 33335556666666553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.3e-10 Score=100.95 Aligned_cols=215 Identities=13% Similarity=-0.041 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNT---IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
+.+.+...++++....... ...++..+..+|.+.|++++|+..|++..+ .++.+|+.+..+|...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555566665442211 234667788999999999999999998775 5678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC
Q 010575 299 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA 377 (507)
Q Consensus 299 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 377 (507)
|+++.+.. +-+..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...+
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99999863 224578888999999999999999999999874 2334444444555556666555555544433 1112
Q ss_pred CHHHHHHHHHHHH----HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 378 NAAIWGSLLAASN----IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 378 ~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
....+. ++..+. ..+..+.+...+.......|....+|..++.+|...|++++|++.|++....+
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222 122221 22234444444444455667777789999999999999999999999987543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=5.5e-09 Score=92.82 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=144.0
Q ss_pred CCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+..++|..+|++..+ .+...|...+..+...|++++|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887653 3556788888999999999999999999987643333557888899999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHH-HhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDL-LGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ....+...|..++..+...|+.++|..+|+++++..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999863 23344555544443 34468999999999988 22346788999999999999999999999999987775
Q ss_pred CCc----hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 412 NSG----NYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 412 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++. +|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 678888877889999999999998854
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=1.6e-10 Score=104.41 Aligned_cols=251 Identities=8% Similarity=-0.087 Sum_probs=180.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH-HHH---HHHH-------HhccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLA---ALSA-------CAQLGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
++......+..++|++++++.++. .|+..+ |+. ++.. +...|.+++|..+++.+.+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444458888888888874 355432 222 2222 233455788888999888765 55666777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010575 250 ALIDMYAKSG--KIGKALQVFENMKN---KSVITWT-TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 323 (507)
Q Consensus 250 ~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 323 (507)
.+..++...+ ++++|...+..+.+ ++...|. .....+...+.+++|+..++++.+... -+...|..+...+..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 7777766655 58899999988764 3455554 445677778999999999999888643 367888888889999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.|++++|...+...... .|.. ..+...+...+..+++...+.+. ...++...+..++..+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 99988887666655542 1211 12333455567777777777665 2233444566677788888999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+.+.++.+|++..++..++.+|.+.|++++|++++++..+
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=7.1e-09 Score=76.95 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=64.4
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
-...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355566777777777777766 2233 55667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHH
Q 010575 431 ESGKIRKVMR 440 (507)
Q Consensus 431 ~A~~~~~~~~ 440 (507)
+|+..+++..
T Consensus 89 ~A~~~~~~a~ 98 (117)
T d1elwa_ 89 EAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777775
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=9e-09 Score=81.34 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=39.9
Q ss_pred HHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
.|.+.|++++|...|+++ ...| +...|..+..+|...|++++|+..|+++++++|++..+|..++.+|...|++++|+
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444444 1112 33344444444444455555555555555555554444555555555555555555
Q ss_pred HHHHHHH
Q 010575 434 KIRKVMR 440 (507)
Q Consensus 434 ~~~~~~~ 440 (507)
+.+++..
T Consensus 99 ~~~~~a~ 105 (159)
T d1a17a_ 99 RDYETVV 105 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.7e-08 Score=74.81 Aligned_cols=105 Identities=13% Similarity=0.005 Sum_probs=88.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGD 394 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~ 394 (507)
-...+...|++++|+..|+++.+. .+.+...|..+..+|...|++++|+..++++ .. +.++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 455677889999999999998864 3456778888899999999999999999887 32 3477889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+++|+..++++++++|+++.++..+..+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999998888887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=7.7e-09 Score=85.47 Aligned_cols=112 Identities=10% Similarity=-0.107 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 386 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 386 (507)
|+...+......+.+.|++++|+..|+++... .+.++..|..+..+|.+.|++++|+..|+++ ...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 45555555566666666666666666666542 2334555566666666666666666666655 3444 344556666
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+|...|++++|+..|++++++.|++...+...+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 666666666666666666666555544444333333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.7e-07 Score=76.14 Aligned_cols=141 Identities=10% Similarity=-0.012 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
...+...|+++.|++.|..+.+++..+|..+..+|...|++++|+..|++.++.. +-+...|..+..++.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456777888888888888877888888888888888888888888888887753 235677777888888888888888
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
..|++.... .+.+... .+...|. ...++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888877652 1222100 0000000 00111 24566777888999999999999999999888
Q ss_pred CC
Q 010575 411 HN 412 (507)
Q Consensus 411 ~~ 412 (507)
+.
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 74
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=5.4e-08 Score=79.23 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=90.3
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVE 396 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 396 (507)
..+...|+++.|++.|.++. +|++.+|..+..+|...|++++|.+.|++. ...| +...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34556778888887776542 456677777888888888888888888777 3333 5667888888888888888
Q ss_pred HHHHHHHHHhccCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 397 LGECALQHLIKLEPHNS----------------GNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 397 ~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+|+..|++++...|.+. .++..++.++.+.|++++|.+.++.....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888876555432 35678899999999999999999988644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=1.5e-08 Score=83.69 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCM 353 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 353 (507)
+...+...+..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+.+.+ +.| +..+|..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence 44445555666667777777777776666542 23556666666667777777777777766663 334 35566666
Q ss_pred HHHHhhcCCHHHHHHHHhhC
Q 010575 354 IDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~ 373 (507)
..+|.+.|++++|...|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 67777777777777666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.78 E-value=1.3e-08 Score=74.74 Aligned_cols=90 Identities=18% Similarity=0.012 Sum_probs=80.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
..+...+.+.|++++|...|+++ ...| ++..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34667788999999999999987 3445 678899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 010575 429 WNESGKIRKVMR 440 (507)
Q Consensus 429 ~~~A~~~~~~~~ 440 (507)
+++|++.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.5e-08 Score=76.65 Aligned_cols=119 Identities=9% Similarity=-0.011 Sum_probs=96.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 393 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 393 (507)
.....|.+.|++++|+..|+++.+. .+.+...|..+..+|...|++++|...|+++ ...| +...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455677889999999999999874 2446788888999999999999999999987 4345 6678999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHH--HcCCchHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYA--ILGRWNESGKIR 436 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~ 436 (507)
++++|...+++++++.|+++.++..+..+.. ..+.+++|+...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999998888776643 445566666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=6.4e-08 Score=77.10 Aligned_cols=109 Identities=6% Similarity=-0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (507)
.+......+.+.|++++|+..|.+........+....- ....... ....+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~-------~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQA-------LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhch-------hHHHHHHHHHHHHHhh
Confidence 34445556777788888888887777542222210000 0000000 0123455566667777
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|++++|+..++++++++|+++.++..++.+|...|++++|+..|++..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 123 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=1.1e-07 Score=83.32 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=127.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA----RVK-PNEITFIA 316 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~-p~~~~~~~ 316 (507)
....|...|++++|...|.+..+ .+ ..+|..+..+|.+.|++++|...+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45567778888888888776653 12 247788888899999999999998876542 111 11245566
Q ss_pred HHHHHh-ccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC----CH-HHH
Q 010575 317 ILSACC-HVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA----NA-AIW 382 (507)
Q Consensus 317 l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~-~~~ 382 (507)
+...|. ..|++++|+..++++.+-.....+ ..++..+...+...|++++|.+.|+++ +..+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 469999999999887643211111 345778899999999999999999886 1111 11 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-----hHHHHHHHHHH--cCCchHHHHHHHHH
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSG-----NYAILSNIYAI--LGRWNESGKIRKVM 439 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~ 439 (507)
...+..+...|+++.|...++++.+++|..+. ....++.++.. .+.+++|+..|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555677899999999999999999886433 34456666655 34578888887544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.72 E-value=1.2e-07 Score=74.04 Aligned_cols=84 Identities=13% Similarity=-0.004 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRV 459 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (507)
.+|..+..+|.+.|++++|+..++++++++|++..+|..++.+|...|++++|+..|++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46777888999999999999999999999999999999999999999999999999999873
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 010575 460 HEFVAGDTSHPDFDRLYQILCKINGQMKFA 489 (507)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 489 (507)
..|++.++...+..+...+++.
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHHH
Confidence 2577778888888877777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4e-08 Score=72.96 Aligned_cols=107 Identities=17% Similarity=0.052 Sum_probs=85.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC---HHHHHHHHhhC-CCCCCH---HHHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEANA---AIWGSLLA 387 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~---~~~~~l~~ 387 (507)
..++..+...+++++|++.|++.... -+.++.++..+..++.+.++ +++|+.+++++ ...|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677788889999999999999873 35567888888888887554 45799999887 444543 36788899
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+|.+.|++++|++.|+++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999987776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=4.1e-07 Score=79.54 Aligned_cols=164 Identities=12% Similarity=-0.030 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHH-cCChHHHHHHHHHHHH----CCCCCC-H
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLAL-HGLGREALDMFSRMER----ARVKPN-E 311 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~----~g~~p~-~ 311 (507)
+|..+..+|.+.|++++|...++...+ .+ ..++..+...|.. .|++++|+..+++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 334444445555555555544444322 01 1234445555543 4777777777776543 121111 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC------H
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-----EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN------A 379 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------~ 379 (507)
.++..+...+...|++++|+..|+++.......+.. ..+...+..+...|+++.|...+++. ...|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 456667777888888888888888876532111111 12334455666778888888888877 33331 2
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHhccCC
Q 010575 380 AIWGSLLAASNI--YGDVELGECALQHLIKLEP 410 (507)
Q Consensus 380 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p 410 (507)
.....++.++.. .+.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 234555555544 2457777777777666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.7e-08 Score=73.12 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=92.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYG---DVELGECALQHLIKLEPHN--SGNYAILSNIY 423 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 423 (507)
..+++.+...+++++|.+.|++. ... .++.++..+..++.+.+ +.++|+.+++++++.+|++ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45788888999999999999998 333 47788999999987654 5567999999999988764 34789999999
Q ss_pred HHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 424 AILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
.+.|++++|+++|+++.+ ..|++.+...+...+.+.+++
T Consensus 83 ~~~g~~~~A~~~~~~aL~--------------------------~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999974 356777777787777776654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.1e-07 Score=74.04 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+......+.+.|++++|+..|.+.+..- |.. .+....-......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHH
Confidence 345566778999999999999999987631 110 00000111111111 12356778889
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
|.+.|++++|+..++++ ...| ++..|..++.+|...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4445 7888999999999999999999999999999999999999998888776655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.54 E-value=3.2e-07 Score=72.90 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECC
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSK 457 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (507)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|++.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34467778888999999999999999999999999999999999999999999999999998742
Q ss_pred EEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 458 RVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
.|++.++...+..+...+++
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHH
Confidence 45566777777666665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=2.3e-05 Score=67.05 Aligned_cols=225 Identities=9% Similarity=-0.097 Sum_probs=130.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45566666666777777777777777776654 33333334333332 234444444444433333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSAC---- 321 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~---- 321 (507)
+......+...+.. ..+.+.|...++...+.|.. .....+...+
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC
Confidence 22222233322222 34556666666666665432 1222222222
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YG 393 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 393 (507)
........+...+..... ..+...+..|...|.. ..+...+..+++......+......+...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 223455566666665544 2355566666666654 45566677777666333466666667666655 56
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
++++|+..|+++.+.+ ++.++..|+.+|.+ ..+.++|.++|++.-+.|.
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8999999999997764 46788899988876 3478999999999876664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.52 E-value=9.1e-07 Score=70.04 Aligned_cols=110 Identities=8% Similarity=-0.037 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNI 391 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (507)
..+......+.+.|++.+|+..|+++.......+.... +.. ...+. -...+|..+..+|.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~----~~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASES----FLLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcch----hHHHHHHhHHHHHHH
Confidence 34555566677777777777777776643222211100 000 00000 012244556666677
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.|++++|+..++++++++|++..+|..++.+|...|++++|++.|+++.
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al 125 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.2e-08 Score=93.85 Aligned_cols=145 Identities=12% Similarity=-0.019 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHH
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSA--CCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 368 (507)
+..+.+.++...+....++..-....+.. ....+.++.++..+.... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 34555666665554333333222111111 122344555554444333 3333 34556667777777788877777
Q ss_pred HHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 369 LLRRMPFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 369 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++..- .++ ..++..++..+...|++++|+..|+++++++|++...|+.|+.++...|+..+|+..|.+..
T Consensus 142 ~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 142 PQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665541 111 24566677778888888888888888888888888888888888888888888888887775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.46 E-value=2.1e-06 Score=67.92 Aligned_cols=141 Identities=9% Similarity=-0.070 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+...+..+.+.|++.+|+..|++.... .|. . .....+. ......+ ....|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~-~~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------E-YGLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------C-CSCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------h-hccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 45667788899999999999999886642 000 0 0000011 1111111 13456678888
Q ss_pred HhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH-HH
Q 010575 357 LGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE-SG 433 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~ 433 (507)
|.+.|++++|+..++++ .. +.+...|..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999987 33 34778899999999999999999999999999999999999999888877665543 44
Q ss_pred HHHHHH
Q 010575 434 KIRKVM 439 (507)
Q Consensus 434 ~~~~~~ 439 (507)
+.+..|
T Consensus 154 k~~~~~ 159 (168)
T d1kt1a1 154 RTYANM 159 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=8e-07 Score=70.52 Aligned_cols=134 Identities=8% Similarity=-0.057 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.+......+...|++++|+..|.++++. ............. .. -.+.....|..+..++
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~~---~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------AK---LQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------GG---GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------HH---hChhhHHHHHHHHHHH
Confidence 3445566677788888888887776531 0000000000000 00 0012456677888999
Q ss_pred hhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 358 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
.+.|++++|+..++++ ...| ++..|..+..++...|++++|+..|+++++++|++..+...+..+..+.....++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5455 6778999999999999999999999999999999999888888777655444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=0.00042 Score=60.32 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
|..++-.|.+.|++++|..++ .++ .++..-....+..+.+..+++...++.....+. . +...+.++....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~--p~~i~~lL~~v~ 246 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---K--PLLLNDLLMVLS 246 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---C--GGGHHHHHHHHG
T ss_pred hHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---C--HHHHHHHHHHhc
Confidence 344455555666666655442 222 222222333445555666666655555555442 2 233345555555
Q ss_pred hcCCHHHHHHHHhhC
Q 010575 359 RAGYLQEAEKLLRRM 373 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~ 373 (507)
..-+..+..+.+++-
T Consensus 247 ~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 247 PRLDHTRAVNYFSKV 261 (336)
T ss_dssp GGCCHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhc
Confidence 555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.43 E-value=1.7e-06 Score=67.11 Aligned_cols=127 Identities=11% Similarity=-0.061 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.+...+..+.+.|++.+|+..|.+....- |.. ......... .... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 45556677778888888888888776531 100 000000000 0000 01234677788999
Q ss_pred hhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 4445 778999999999999999999999999999999999888877665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=6.2e-07 Score=67.33 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=75.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch-------HHHHH
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN-------YAILS 420 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~ 420 (507)
+..+...+.+.|++++|+..|++. ...| +...+..+..+|...|++++|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456778888999999999999887 3334 67788999999999999999999999999999887764 45566
Q ss_pred HHHHHcCCchHHHHHHHHHH
Q 010575 421 NIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++...+++++|++++++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 67788889999999998875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00049 Score=58.34 Aligned_cols=95 Identities=13% Similarity=-0.046 Sum_probs=69.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAAL 217 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 217 (507)
|+..+..+...+.+.+++++|++.|++..+ .+..++..|...|.. ..++..|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 456777888888899999999999999864 467777778888876 6688899999988887662 23333333
Q ss_pred HHHh----ccCCHHHHHHHHHHHHHcC
Q 010575 218 SACA----QLGAVELGEWIHNYIEQYG 240 (507)
Q Consensus 218 ~~~~----~~~~~~~a~~~~~~~~~~~ 240 (507)
..+. ...+.+.|...++...+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 3332 2456777877777777665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.18 E-value=4.3e-06 Score=60.77 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=39.8
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
..+.+.|++++|...+++.++..+. +..+|..+..++.+.|++++|+..|++..+..| +..+|..+...|...|++++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 3344455555555555555544322 344445555555555555555555555444434 33444444444444444444
Q ss_pred HHHHHH
Q 010575 163 ARALFE 168 (507)
Q Consensus 163 A~~~~~ 168 (507)
|++.|+
T Consensus 103 A~~~l~ 108 (112)
T d1hxia_ 103 ALASLR 108 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.002 Score=55.86 Aligned_cols=280 Identities=15% Similarity=0.101 Sum_probs=154.2
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
||..-...+.+.|-+.|.++.|..++..+. -|..++..+.+.+++..|.+++.+. -+..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 444444456677778899999998888644 4778888888889998888877644 25567888888888
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARAL 166 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~ 166 (507)
+......+ .+.......+......++..|-..|.+++...+++..... ..+...++.++..|++.+. ++..+.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 77665443 2223333445566677888999999999999999976554 3467778888888888653 444444
Q ss_pred HHhcCC-CCh----------hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010575 167 FELMTE-KNV----------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 167 ~~~~~~-~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 235 (507)
+..... -|. ..|.-++..|.+.|+++.|..+.- .. .++.......+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 444321 111 123444455555555555544321 11 12222222334445555555555555554
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010575 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI 315 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 315 (507)
..+. .| ...+.++......-+..+..+ .+.+.++..-....++.....| +....+
T Consensus 230 yL~~--~p--~~i~~lL~~v~~~~d~~r~V~------------------~~~k~~~l~li~p~Le~v~~~n---~~~vn~ 284 (336)
T d1b89a_ 230 YLEF--KP--LLLNDLLMVLSPRLDHTRAVN------------------YFSKVKQLPLVKPYLRSVQNHN---NKSVNE 284 (336)
T ss_dssp HHHH--CG--GGHHHHHHHHGGGCCHHHHHH------------------HHHHTTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred HHHc--CH--HHHHHHHHHhccCCCHHHHHH------------------HHHhcCCcHHHHHHHHHHHHcC---hHHHHH
Confidence 4432 12 222344444444444444333 3444555566666666555443 345667
Q ss_pred HHHHHHhccCcHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYF 334 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~ 334 (507)
.+...|...++++.-.+..
T Consensus 285 al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 285 SLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCcchhHHHHHHH
Confidence 7777777777765544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.9e-06 Score=57.87 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
...+-.+...+.+.|++++|+..|++++++.|.+ ..++..|+.++.+.|++++|++.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh---------
Confidence 4445678888999999999999999998776553 346889999999999999999999999742
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
+|++.++...+..+.+.|.
T Consensus 76 -----------------~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 76 -----------------DPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHH
T ss_pred -----------------CcCCHHHHHHHHHHHHHhC
Confidence 5777788888877766654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.9e-06 Score=57.54 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC----C----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM----P----FEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
..+..+...+.+.|++++|...|+++ + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 33445666777777777777777665 1 1222 4678899999999999999999999999999999998888
Q ss_pred HHHH
Q 010575 419 LSNI 422 (507)
Q Consensus 419 l~~~ 422 (507)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.10 E-value=7.6e-06 Score=63.61 Aligned_cols=62 Identities=11% Similarity=-0.106 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-----------CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPH-----------NSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..|+.+..+|...|++++|...+++++++.|. ...++..++.+|...|++++|++.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999888888765432 122578899999999999999999999863
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.1e-05 Score=58.62 Aligned_cols=93 Identities=4% Similarity=-0.072 Sum_probs=47.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC-----HHHHHHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN-----AAIWGSLLA 387 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~ 387 (507)
+...+...|++++|+..|.+..+. .+.+...+..+..+|.+.|++++|...++++ +..+. ..+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 333444444444444444444432 1223444444444455555555555444443 10111 134555666
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 010575 388 ASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.+...+++++|+..+++.+...|+
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCC
Confidence 667777777777777777766654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.08 E-value=1.3e-05 Score=63.57 Aligned_cols=112 Identities=13% Similarity=0.024 Sum_probs=79.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH-HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL-QEAEKLLRRMPFEANAAIWGSLLAASNIYGD 394 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (507)
.........|++++|.+.|.....-+ +....- .+ ..+.+ .....-++. .....+..++.++...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~-----~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVLD-----DL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTG-----GG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccccc-----cC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 33456778899999999988887532 221100 00 00110 000011110 123467788899999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+++|+..++++++.+|.+...|..++.+|.+.|++.+|++.|+++.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=1.8e-06 Score=66.21 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC-----------chHHHHHHHHHHh
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR-----------WNESGKIRKVMRD 441 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~ 441 (507)
.+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 3456889999999999999999999999999988764 6888888888863
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.07 E-value=1.8e-06 Score=66.15 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 364 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG-----------DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 364 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
++|+..|+++ .+.| +..+|..+..+|...| ++++|.+.|+++++++|++...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 4444444444 2223 3444555555444332 46889999999999999988777777654 4
Q ss_pred HHHHHHHHHHhCCC
Q 010575 431 ESGKIRKVMRDMGV 444 (507)
Q Consensus 431 ~A~~~~~~~~~~~~ 444 (507)
.|.+++.+..+.|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666665554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.83 E-value=0.00013 Score=56.39 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=58.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCC----------hhHHHHHHHHHhhcCCHHHHHHHHhhC--------CCCCC---
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPK----------IEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEAN--- 378 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~--- 378 (507)
.+...|++++|+..|++..+...-.|+ ...|+.+..+|.+.|++++|...+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666665543222221 245666666777777777776666554 11222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 379 --AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 379 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
...+..+..+|...|++++|+..|++++++.|..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2246777888999999999999999998876543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.5e-06 Score=79.54 Aligned_cols=218 Identities=7% Similarity=-0.078 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 94 LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV-AVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
+|.+.|++..+..+. ....+..+..+|...|++++| |+++....|+. ..++... .+. ...+..+.+.++...+
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ-DLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH-HHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH-HHH-HHHHHHHHHHHHHhcc
Confidence 567778877765322 233455566677777777665 55555443321 1111111 000 1113344444544332
Q ss_pred ----CChhHHHHHH--HHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 010575 173 ----KNVISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 173 ----~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (507)
++..-..... ......+.++.++..++...+.. .++...+..+...+.+.|+.+.|...+....... ...
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~ 153 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQH 153 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHH
Confidence 1211111111 11222334444444444333221 2234445556666667777777766665554322 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
.+..+...+...|++++|...|.+..+ | +..+|+.+...+...|+..+|+..|.+..... +|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 555677777777788888877777654 2 44677777777777788888887777777653 456666666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.79 E-value=2.7e-05 Score=66.00 Aligned_cols=128 Identities=12% Similarity=-0.029 Sum_probs=91.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQ 364 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 364 (507)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 456789999999999998873 346788889999999999999999999999864 454 445555555555555555
Q ss_pred HHHHHHhhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 365 EAEKLLRRM--PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 365 ~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|+.+..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 544433322 22232 233444455678889999999999999999998776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.50 E-value=5.5e-05 Score=63.98 Aligned_cols=120 Identities=8% Similarity=-0.012 Sum_probs=86.6
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 398 (507)
..+.|++++|+..+++..+ ..+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999997 44667899999999999999999999999988 44564 44555555555444444433
Q ss_pred HHHHHHHhc-cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 399 ECALQHLIK-LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 399 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
......... ..|++...+...+..+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 322222211 23444445566678889999999999999998643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.0018 Score=50.83 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=77.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHH
Q 010575 217 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
.......|+++.|...+...+..--.+ . +......+-+...-..+.......+..+...+...|++++|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~--~--------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGP--V--------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSS--T--------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccc--c--------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 345677788888888888777641100 0 000000000111111111123356777888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhH
Q 010575 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQ 349 (507)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 349 (507)
..++++.+.. +-+...|..++.++...|+.++|++.|+++.. ..|+.|+..+
T Consensus 88 ~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999988763 34778888999999999999999988888744 3488888655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.054 Score=49.28 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=22.8
Q ss_pred HHhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 356 LLGRAGYLQEAEKLLRRMPFEA--NAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
...+.+++..+...++.++..| ...-.-=+..++...|+.+.|...|..+.
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 3344455555555555553222 11111123344555555555555555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.0015 Score=46.62 Aligned_cols=64 Identities=14% Similarity=-0.016 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYG---DVELGECALQHLIKLEPHNS-GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|...+--.+.+++.++. +.++|+.+++.+++.+|.+. ..+..|+.+|.+.|++++|.++++++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445455555555443 33456666666665555443 455566666666666666666666665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.19 E-value=0.035 Score=40.59 Aligned_cols=82 Identities=11% Similarity=-0.098 Sum_probs=45.6
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCCchHH
Q 010575 361 GYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNES 432 (507)
Q Consensus 361 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 432 (507)
.+.++|.+++++....-++.....|...|.. ..|.++|.++|+++.+.+ ++.+...|+.+|.. ..+.++|
T Consensus 37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 3445555555554212234444444444432 345677777777775543 34566667766665 3467777
Q ss_pred HHHHHHHHhCCC
Q 010575 433 GKIRKVMRDMGV 444 (507)
Q Consensus 433 ~~~~~~~~~~~~ 444 (507)
.+++++.-+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 777777665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.94 E-value=0.15 Score=35.73 Aligned_cols=141 Identities=10% Similarity=0.037 Sum_probs=98.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+...|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 44567788888888887763 3556667677666666777777777777755433322 333333
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
....+-.+. .+....+..+......|+-+.-..+++.+++.+..+|.+...++.+|.+.|...++-+++.+.-+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 344456666777888899999999999887766666889999999999999999999999998888874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.7 Score=41.50 Aligned_cols=390 Identities=11% Similarity=-0.018 Sum_probs=201.9
Q ss_pred HHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHc--CCCchHHHHHHHHHHHcCCCCCccc----HHHHHHHHHccCC
Q 010575 18 DSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQ--TDNPLNAVILYNKIQASALRPDNYS----FPFVLKAVVKLST 91 (507)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~ 91 (507)
.-..+.|+...+.++...+..-....|-..-..-.. .....+...+++ + .|+... -...+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~---~---~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR---A---NPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHH---H---CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHH---H---CCCChhHHHHHHHHHHHHHhccC
Confidence 344567888888888888865224434333222222 223333333333 2 233222 1223455667777
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHH------------------HHH
Q 010575 92 IELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNT------------------MVA 152 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~------------------li~ 152 (507)
++.....+. ..+.+...-..+..+....|+.+.|...+..+-..+. ....... -+.
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~ 162 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIR 162 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 665443321 1233455555666777778888887777765533321 2222222 333
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc--cCCHHHHH
Q 010575 153 GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ--LGAVELGE 230 (507)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~ 230 (507)
.....|+...|..+...+...........+..... ...+...... ..++......+..++.+ ..+.+.+.
T Consensus 163 ~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~ 234 (450)
T d1qsaa1 163 LAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TGATDFTRQMAAVAFASVARQDAENAR 234 (450)
T ss_dssp HHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CCCChhhhHHHHHHHHHHhccChhHHH
Confidence 34445666666666665554333333444443322 2222222111 12233333333333332 24667777
Q ss_pred HHHHHHHHcCCCCchhHHHHH----HHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 231 WIHNYIEQYGLNTIVPLNNAL----IDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.++........... .-...+ ...+...+..+.+...+..... .+.....-.+......+++..+...+..|..
T Consensus 235 ~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~ 313 (450)
T d1qsaa1 235 LMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (450)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHHHhhhhcccccH-HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCc
Confidence 77777665432222 111111 1222234555666666654432 2333333344455667888888888887754
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHH-H--
Q 010575 305 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAA-I-- 381 (507)
Q Consensus 305 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-- 381 (507)
. ......-.--+..++...|+.+.|...|..+.. .++ .|.-|... +.|..-.. . ....+..+... .
T Consensus 314 ~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~~~-~-~~~~~~~~~~~~~~~ 382 (450)
T d1qsaa1 314 E-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEYEL-K-IDKAPQNVDSALTQG 382 (450)
T ss_dssp T-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCCCC-C-CCCCCSCCCCHHHHS
T ss_pred c-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCCCC-C-cCCCCccHHHhhhcC
Confidence 3 222344445677888888999999988888763 233 33333322 22211000 0 00011111111 1
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 382 -WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 382 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
-..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+..
T Consensus 383 ~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 383 PEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1123456778999999999998887543 34567788899999999999998887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.065 Score=37.91 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHhhcC---CHHHHHHHHhhC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA-NA-AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
|++.+-....-++++.. +.++++.+++.. ...| +. ..+..|..+|.+.|++++|.+.++++++++|++..+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 44445445555555443 445677777766 2233 33 46677888899999999999999999999999865543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.42 E-value=0.14 Score=37.06 Aligned_cols=111 Identities=6% Similarity=-0.086 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEA 366 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 366 (507)
++++|+.+|++..+.|.. . ....|. .....+.++|...+++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567777788777776522 2 222232 23446778888888877654 3 44455555555543 4567888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 010575 367 EKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEP 410 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 410 (507)
.++|++.-..-++.....|...|.. ..|.++|..+++++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888887323456666666666655 4578888888888866553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.53 E-value=0.76 Score=32.09 Aligned_cols=139 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred HccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 010575 87 VKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARAL 166 (507)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 166 (507)
.-.|..++..+++.+..+.. +..-||-++.-....-+-+...++++.+-... |.. .++++......
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F-Dls----------~C~Nlk~vv~C 78 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLD----------KCQNLKSVVEC 78 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGG----------GCSCTHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhc-Cch----------hhhcHHHHHHH
Confidence 34556666666666665542 34445555555555555555555555554331 111 12222222222
Q ss_pred HHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 167 FELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 167 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
+-.+- .+....+.-++...+.|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++..++.+.-+.|.
T Consensus 79 ~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 22221 233344555666777777777777777766643 56666777777777777777777777776666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.39 E-value=0.79 Score=30.26 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.-++..-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556777777787888899999999999999999999999999999987543 33456665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.89 E-value=0.97 Score=29.82 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 56 NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444666777777777788888888888888888888888888888776542 334455655544
|