Citrus Sinensis ID: 010642
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SN85 | 591 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.854 | 0.677 | 0.0 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.996 | 0.678 | 0.422 | 1e-121 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 1.0 | 0.814 | 0.409 | 1e-120 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.988 | 0.789 | 0.402 | 1e-118 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.998 | 0.682 | 0.396 | 1e-118 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.964 | 0.753 | 0.417 | 1e-118 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.996 | 0.845 | 0.406 | 1e-116 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.996 | 0.703 | 0.392 | 1e-115 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.996 | 0.808 | 0.387 | 1e-115 | |
| Q9LXY5 | 581 | Pentatricopeptide repeat- | no | no | 0.996 | 0.865 | 0.418 | 1e-114 |
| >sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/509 (67%), Positives = 414/509 (81%), Gaps = 4/509 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+RA+S+S +P EGF LF +R+ +P NP + SFA+KCC+K L+GGLQIH ++ D
Sbjct: 83 MIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ DS LMTTLMDLYST E S +ACK+FDEIP+RDTV+WNVL SCY+RN+RTRD L LF
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLF 202
Query: 120 DNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D + + GC KPD VTCLL LQACA+LGAL+FG+++H +I E+G +NL N+L++MY
Sbjct: 203 DKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CGS+ A++VF GM E++VVSW+A+ISGLAMNG G++AIE+F M + G+ P++QT T
Sbjct: 263 SRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 239 GVLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+LSACSH GLV EGMMF DRM S +F I PN+HHYGCVVDLLGRA LLD+AY LI SM
Sbjct: 323 GLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSME 382
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
+KPDSTIWRTLLGACR+H V LGERVI HLIELKA+E+GDYVLLLN YS+VG WEKV E
Sbjct: 383 MKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTE 442
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
LR M EK + T PGCS I L+G VHEF+VDDVSHPR EIY+ML EIN+QLKIAGYVAE
Sbjct: 443 LRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 418 ITSELHNLGA-EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
ITSELHNL + EEKG AL YHSEKLAIAFG+L TPPGTTIRV KNLR CVDCHNFAK +S
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVS 562
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
VY+R VI+RDR RFHHF+ G CSCND+W
Sbjct: 563 DVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/507 (42%), Positives = 319/507 (62%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + + +E LF+ M + + + + C + S+ G Q+H + G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + +++ L+DLYS + AC LF+ +P +D ++WN LI Y ++AL LF
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH--GYGSKMNLCNSLIAMY 178
+ R SG P+DVT L +L ACAHLGA++ G IH YI + G + +L SLI MY
Sbjct: 357 EMLR--SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCG + A +VF + K + SW+AMI G AM+G + + F M++ G+ PDD TF
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+LSACSH G++D G M++D+ + P + HYGC++DLLG +GL +A ++I M +
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+PD IW +LL AC++H +V LGE E+LI+++ + G YVLL N+Y+S G W +V +
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R +N+KG++ PGCS+I + VVHEF++ D HPR EIY ML+E+ L+ AG+V +
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDT 654
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L + E K AL +HSEKLAIAFG+++T PGT + + KNLR+C +CH K++S +
Sbjct: 655 SEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 714
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
Y RE+I RDR RFHHFR+G CSCNDYW
Sbjct: 715 YKREIIARDRTRFHHFRDGVCSCNDYW 741
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/535 (40%), Positives = 315/535 (58%), Gaps = 30/535 (5%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+R +S S PE L+++M P N + +K C + QIHA++ + G
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLG 145
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
Y+ D + +L++ Y+ A LFD IP+ D V+WN +I Y++ + AL LF
Sbjct: 146 YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 121 --------------------NLNRE---------ESGCKPDDVTCLLVLQACAHLGALEF 151
++N+E S +PD+V+ L ACA LGALE
Sbjct: 206 KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAM 211
G+ IH Y+++ L LI MY+KCG + A EVFK + +K V +W+A+ISG A
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
+GHGR+AI F MQ+ G+ P+ TFT VL+ACS+ GLV+EG + M +D+ + P I
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331
HYGC+VDLLGRAGLLD+A + I M +KP++ IW LL ACRIHK++ LGE + E LI +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVS 391
G YV N+++ W+K E R M E+G+ PGCSTI L+G HEF+ D S
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 505
Query: 392 HPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSY-HSEKLAIAFGVLAT 450
HP I +I + ++L+ GYV E+ L +L +++ A+ + HSEKLAI +G++ T
Sbjct: 506 HPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKT 565
Query: 451 PPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
PGT IR+ KNLR+C DCH K++S +Y R++++RDR RFHHFR+G+CSC DYW
Sbjct: 566 KPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/536 (40%), Positives = 314/536 (58%), Gaps = 37/536 (6%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+ S++ ++ F L+ ++ I N F S +K CS G IH VL+ G
Sbjct: 102 INTASINGLKDQAFLLYVQLLSSEINPNEFTFS----SLLKSCSTKSGKLIHTHVLKFGL 157
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR--------------------------- 94
+D + T L+D+Y+ A K+FD +P+R
Sbjct: 158 GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 95 ----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150
D V+WNV+I Y ++ DAL LF L E KPD++T + L AC+ +GALE
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKL-LAEGKPKPDEITVVAALSACSQIGALE 276
Query: 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLA 210
G IH ++ + +C LI MYSKCGSL A VF P KD+V+W+AMI+G A
Sbjct: 277 TGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYA 336
Query: 211 MNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
M+G+ +DA+ F MQ G+ P D TF G L AC+H GLV+EG+ + M +++GI P
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
I HYGC+V LLGRAG L +AY+ I +M + DS +W ++LG+C++H LG+ + E+LI
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
L + SG YVLL N+Y+SVGD+E V ++R M EKG+ PG STI ++ VHEF D
Sbjct: 457 GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGD 516
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLA 449
H + EIY ML +I++++K GYV + L +L EK +L HSE+LAIA+G+++
Sbjct: 517 REHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIS 576
Query: 450 TPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
T PG+ +++ KNLR+C DCH K++S + R++++RDR RFHHF +G CSC D+W
Sbjct: 577 TKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/537 (39%), Positives = 318/537 (59%), Gaps = 33/537 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ + SP++ LF+KM + + + + C K +L G Q+ + + +
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFD------------------------------- 89
++ L ++D+Y+ +A +LFD
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
+PQ+D VAWN LIS Y +N + +AL +F L +++ K + +T + L ACA +GAL
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN-MKLNQITLVSTLSACAQVGAL 381
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
E G IH YI +HG ++ ++LI MYSKCG L + EVF + ++DV WSAMI GL
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
AM+G G +A++ F MQ A V P+ TFT V ACSH GLVDE +M ++GI+P
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
HY C+VD+LGR+G L++A + I +M + P +++W LLGAC+IH ++ L E L+
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLL 561
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDD 389
EL+ + G +VLL N+Y+ +G WE V ELR+ M GL+ PGCS+I + G++HEF+ D
Sbjct: 562 ELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 621
Query: 390 VSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEE-KGNALSYHSEKLAIAFGVL 448
+HP ++Y L E+ ++LK GY EI+ L + EE K +L+ HSEKLAI +G++
Sbjct: 622 NAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLI 681
Query: 449 ATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+T IRV KNLR+C DCH+ AK++S +Y+RE+I+RDR RFHHFR G+CSCND+W
Sbjct: 682 STEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/534 (41%), Positives = 318/534 (59%), Gaps = 47/534 (8%)
Query: 17 LFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLY- 75
+E M + + N F +K C K + G QIH L+ G+ D +M+ L+ +Y
Sbjct: 115 FYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYV 174
Query: 76 --------------STFEKSFEA--------------------------CK----LFDEI 91
+ EK CK LFD++
Sbjct: 175 MCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM 234
Query: 92 PQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151
QR V+WN +IS Y N +DA+ +F + + + +P+ VT + VL A + LG+LE
Sbjct: 235 RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD--IRPNYVTLVSVLPAISRLGSLEL 292
Query: 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAM 211
GE +H Y + G L ++LI MYSKCG + A VF+ +P ++V++WSAMI+G A+
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI 352
Query: 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271
+G DAI+ F M++AGV P D + +L+ACSH GLV+EG + +M G+ P I
Sbjct: 353 HGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIE 412
Query: 272 HYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331
HYGC+VDLLGR+GLLD+A + I +M +KPD IW+ LLGACR+ +V +G+RV L+++
Sbjct: 413 HYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDM 472
Query: 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVS 391
+SG YV L N+Y+S G+W +V E+R M EK ++ PGCS I + GV+HEFVV+D S
Sbjct: 473 VPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDS 532
Query: 392 HPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATP 451
HP+ EI ML EI+ +L++AGY T L NL E+K N L YHSEK+A AFG+++T
Sbjct: 533 HPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTS 592
Query: 452 PGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
PG IR+ KNLRIC DCH+ K++S VY R++ +RDR RFHHF++G CSC DYW
Sbjct: 593 PGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/507 (40%), Positives = 316/507 (62%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMR-QKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R Y+ + F L+ +MR + + F IK + G IH+ V+R
Sbjct: 91 LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ + +L+ LY+ A K+FD++P++D VAWN +I+ + N + +AL L+
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+N + G KPD T + +L ACA +GAL G+++H Y+ + G ++ N L+ +Y+
Sbjct: 211 TEMNSK--GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFT 238
+CG + A +F M +K+ VSW+++I GLA+NG G++AIE F M+ G+ P + TF
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+L ACSHCG+V EG + RM +++ I P I H+GC+VDLL RAG + +AY+ I SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+P+ IWRTLLGAC +H L E +++L+ SGDYVLL N+Y+S W V+++
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R+ M G++ PG S + + VHEF++ D SHP+ + IY L E+ +L+ GYV +I
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
++ ++ EEK NA+ YHSEK+AIAF +++TP + I V KNLR+C DCH K++S V
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
YNRE+++RDR RFHHF+ G CSC DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/505 (39%), Positives = 310/505 (61%), Gaps = 2/505 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++ Y+ S E+ + +M + + F S + ++ ++ G +IH V+R G
Sbjct: 213 IIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG 272
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
D + ++L+D+Y+ + ++ ++F + RD ++WN L++ Y++N R +AL LF
Sbjct: 273 IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFR 332
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ + KP V V+ ACAHL L G+++H Y+ G+GS + + ++L+ MYSK
Sbjct: 333 QM--VTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG++ A ++F M D VSW+A+I G A++GHG +A+ F M+R GV P+ F V
Sbjct: 391 CGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAV 450
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L+ACSH GLVDE + + M+K +G+ + HY V DLLGRAG L++AY I+ M V+P
Sbjct: 451 LTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
++W TLL +C +HK++ L E+V E + + ++ G YVL+ N+Y+S G W+++ +LR
Sbjct: 511 TGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRL 570
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M +KGL+ P CS I +K H FV D SHP +++I + L + +Q++ GYVA+ +
Sbjct: 571 RMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSG 630
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
LH++ E K L HSE+LA+AFG++ T PGTTIRV KN+RIC DCH K +S +
Sbjct: 631 VLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITE 690
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+I+RD RFHHF G CSC DYW
Sbjct: 691 REIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/537 (38%), Positives = 319/537 (59%), Gaps = 34/537 (6%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
++R +S + P + F + +M + RI + F IK + ++ G Q H++++R G
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFG 147
Query: 61 YQLDSQLMTTLMDLY------------------------STFEKSFEAC-------KLFD 89
+Q D + +L+ +Y ++ + C ++FD
Sbjct: 148 FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFD 207
Query: 90 EIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149
E+P R+ W+++I+ Y +N A+ LF+ + RE G ++ + V+ +CAHLGAL
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE--GVVANETVMVSVISSCAHLGAL 265
Query: 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGL 209
EFGE+ + Y+ + + L +L+ M+ +CG + A VF+G+PE D +SWS++I GL
Sbjct: 266 EFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGL 325
Query: 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269
A++GH A+ F M G P D TFT VLSACSH GLV++G+ + M KD GI P
Sbjct: 326 AVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPR 385
Query: 270 IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLI 329
+ HYGC+VD+LGRAG L +A I M VKP++ I LLGAC+I+K+ + ERV LI
Sbjct: 386 LEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLI 445
Query: 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVV-D 388
++K + SG YVLL N+Y+ G W+K++ LR+ M EK ++ PG S I + G +++F + D
Sbjct: 446 KVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGD 505
Query: 389 DVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVL 448
D HP + +I + +EI ++++ GY ++ EEK +++ HSEKLAIA+G++
Sbjct: 506 DQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMM 565
Query: 449 ATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
T PGTTIR+ KNLR+C DCH K++S VY RE+I+RDR RFHHFR G CSC DYW
Sbjct: 566 KTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/507 (41%), Positives = 312/507 (61%), Gaps = 4/507 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIP-TNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R +S SSSP + +M + + F +FA+K C + S+ L+IH V+R
Sbjct: 77 LIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRS 136
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ D+ + T+L+ YS A K+FDE+P RD V+WNV+I C+ AL ++
Sbjct: 137 GFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMY 196
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+ E G D T + +L +CAH+ AL G +HR + S + + N+LI MY+
Sbjct: 197 KRMGNE--GVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYA 254
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239
KCGSL A VF GM ++DV++W++MI G ++GHG +AI F M +GV P+ TF G
Sbjct: 255 KCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLG 314
Query: 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK 299
+L CSH GLV EG+ + MS F + PN+ HYGC+VDL GRAG L+ + ++I +
Sbjct: 315 LLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCH 374
Query: 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359
D +WRTLLG+C+IH+++ LGE ++ L++L+A +GDYVL+ ++YS+ D + +R
Sbjct: 375 EDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMR 434
Query: 360 EFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEIT 419
+ + LQT PG S I + VH+FVVDD HP IY L E+ + +AGY E +
Sbjct: 435 KLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDS 494
Query: 420 SELH-NLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L G+A + HSEKLAIA+G++ T GTT+R+ KNLR+C DCH+F K +S
Sbjct: 495 NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKA 554
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
+NRE+I+RDR+RFHHF +G CSCNDYW
Sbjct: 555 FNREIIVRDRVRFHHFADGICSCNDYW 581
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| 225457409 | 643 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.785 | 0.760 | 0.0 | |
| 224074129 | 499 | predicted protein [Populus trichocarpa] | 0.988 | 1.0 | 0.729 | 0.0 | |
| 356513527 | 579 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.872 | 0.693 | 0.0 | |
| 449477579 | 602 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.838 | 0.673 | 0.0 | |
| 297819366 | 591 | pentatricopeptide repeat-containing prot | 1.0 | 0.854 | 0.679 | 0.0 | |
| 15232821 | 591 | pentatricopeptide repeat-containing prot | 1.0 | 0.854 | 0.677 | 0.0 | |
| 356565103 | 515 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 1.0 | 0.980 | 0.673 | 0.0 | |
| 242081563 | 595 | hypothetical protein SORBIDRAFT_07g02134 | 0.978 | 0.830 | 0.598 | 1e-177 | |
| 115476560 | 601 | Os08g0434000 [Oryza sativa Japonica Grou | 0.938 | 0.788 | 0.612 | 1e-175 | |
| 414870414 | 611 | TPA: selenium-binding protein-like prote | 0.978 | 0.808 | 0.580 | 1e-171 |
| >gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/505 (76%), Positives = 442/505 (87%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+RAYSMS SPE+GFYL+ +MR++ +P NP + SF +K C++ SLMGGLQIHAR+LRDG
Sbjct: 139 MIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDG 198
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+Q D+ L+TTLMDLYS +K EACK+FDEIPQ DTV+WNVLISC I N+RTRDAL +FD
Sbjct: 199 HQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFD 258
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ G +PDDVTCLL+LQACA+LGALEFGE++H YI EHGY +NLCNSLI MYS+
Sbjct: 259 IMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSR 318
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG L A+ +FK M E++VVSWSAMISG AM+G+GR+AIE+F MQ+ GV PDDQT TGV
Sbjct: 319 CGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGV 378
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACSHCGLVD+G+MF DRMSK FGI PNIHHYGC+VDLLGRAGLLDQAYQLI SM +KP
Sbjct: 379 LSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKP 438
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
DST+WRTLLGACRIH+H TLGERVI HLIELKAQE+GDYVLLLN+YSSVG+W+KV +LR+
Sbjct: 439 DSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRK 498
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
FM EKG+QT+PGCSTI LKG VHEFVVDD+ HPR +EIY+MLDEI KQLKIAGYVAE++S
Sbjct: 499 FMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSS 558
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
ELHNLGAEEKGN LSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG YN
Sbjct: 559 ELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYN 618
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
REV+IRDR RFHHFREG+CSCN YW
Sbjct: 619 REVVIRDRTRFHHFREGQCSCNGYW 643
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa] gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/499 (72%), Positives = 426/499 (85%)
Query: 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ 66
MSSSP EGF+++++MR+K + +P + SF I+C ++ CSL+GG Q+HAR+L DG+Q DS
Sbjct: 1 MSSSPTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSL 60
Query: 67 LMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREE 126
L+T LMDLYS +K EACK+FDE+ QRDT+AWNVLISCY+RN+RTRD L +FD + E
Sbjct: 61 LLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGE 120
Query: 127 SGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGM 186
GC+PDDVTCLL+LQACA+LGALEFGEK+H +I E GY + NLCNSLIAMYS+ G+L
Sbjct: 121 LGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDK 180
Query: 187 AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246
AF VFKGM K+VV+WSA+ISGLAMNG+GR+AI +F M + GV PDD TFTGVLSACS+
Sbjct: 181 AFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSN 240
Query: 247 CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWR 306
CGLVD+GM+ RMSK+FGI+PNIHHYGC+VDLLGRAG L QAYQLI SM VKPDSTIWR
Sbjct: 241 CGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWR 300
Query: 307 TLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366
TLLGACRIH++V LGE V+EHLIELKAQE+GDYVLL NLYSSV +W+KV ELR+FM EKG
Sbjct: 301 TLLGACRIHRNVILGEHVVEHLIELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKG 360
Query: 367 LQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLG 426
+QTTP S+I LKG VHEFVVDDVSHP+ +EIY+MLDEI+KQLKIAGYVAEITSEL NL
Sbjct: 361 IQTTPASSSIELKGKVHEFVVDDVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLD 420
Query: 427 AEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIR 486
AEEK LSYHSEKLAIAFGVLATPPGTTIR+AKNLRICVDCHNFAK+LSGVYNR+VII
Sbjct: 421 AEEKRYVLSYHSEKLAIAFGVLATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIIT 480
Query: 487 DRLRFHHFREGRCSCNDYW 505
D RFHHFR G CSCNDYW
Sbjct: 481 DHTRFHHFRGGHCSCNDYW 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/505 (69%), Positives = 416/505 (82%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+RA SMS SP++G L+ MR++ I +P + SFA+K C++F L GG+Q+H + +DG
Sbjct: 75 MIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDG 134
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+Q D+ L+T +MDLYS ++ +ACK+FDE+P RDTVAWNV+ISC IRN RTRDAL LFD
Sbjct: 135 HQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFD 194
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ C+PDDVTCLL+LQACAHL ALEFGE+IH YI E GY +NLCNSLI+MYS+
Sbjct: 195 VMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSR 254
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG L A+EVFKGM K+VVSWSAMISGLAMNG+GR+AIE+F M R GV PDDQTFTGV
Sbjct: 255 CGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGV 314
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACS+ G+VDEGM F RMS++FG+ PN+HHYGC+VDLLGRAGLLD+AYQLI SM VKP
Sbjct: 315 LSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKP 374
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
DST+WRTLLGACRIH HVTLGERVI HLIELKAQE+GDYVLLLN+YSS G WEKV E+R+
Sbjct: 375 DSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRK 434
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M K +QTTPGCSTI LKG VHEFVVDDVSH R EIY+ LDEIN QL+IAGYV E++S
Sbjct: 435 LMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSS 494
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
ELH + +EKG LS+HSEKLA+AFGVLATPPGT +RVA NLR+CVDCHNF K+ SGVYN
Sbjct: 495 ELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYN 554
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
R+V++RD RFHHFR GRCSC+DYW
Sbjct: 555 RDVVLRDHNRFHHFRGGRCSCSDYW 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/505 (67%), Positives = 416/505 (82%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+RAYS+S SP EG Y++ M ++ + +P + SFA+K C+K SL+ G+QIHAR+ +G
Sbjct: 98 MLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIFING 157
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+Q DS L+T++MDLYS K EACKLFDE+PQ+D VAWNVLISC RN+RTRDAL LF+
Sbjct: 158 HQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFE 217
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ C+PD VTCLL+LQACA L ALEFGE+IH YI +HGY ++ NLCNSLI+MYS+
Sbjct: 218 IMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMYSR 277
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG + A+EVF M EK+VVSWSAMISGL+MNGHGR+AIE+F MQ+ GV P D TFT V
Sbjct: 278 CGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFTAV 337
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSACSHCGLVDEGM F DRM ++F I PN+HHYGC+VDLLGRAG+LDQAY+LI SM V+P
Sbjct: 338 LSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEVRP 397
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+T+WRTLLGACRIH H LGER++EHLIELK+QE+GDYVLLLN+YSS G+W+KV ELR+
Sbjct: 398 DATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRK 457
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M EKG+ TTP C+TI L GVVH+F VDD+SHP ++IY+ LDEINKQLKIAGY AE++S
Sbjct: 458 LMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGYEAEMSS 517
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
ELH L ++KG ALS HSEKLAIAFGVLATPPG TIR+A N+R C+DCHNFAK +S VYN
Sbjct: 518 ELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKYISSVYN 577
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
R+V++RDR RFHHF+EGRCSCND+W
Sbjct: 578 RKVVVRDRSRFHHFQEGRCSCNDFW 602
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/509 (67%), Positives = 414/509 (81%), Gaps = 4/509 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQK-RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+RA+S+S +P EGF LF +R+ P NP + SFA+KCC+K L+GGLQIH ++ D
Sbjct: 83 MIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ DS LMTTLMDLYST E S +ACK+FDEIPQRDTV+WNVLISCY+RN+RTRD L LF
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDVLVLF 202
Query: 120 DNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D + + C KPD+VTCLL LQACA+LGAL+FG+++H +I E+G +NL N+L++MY
Sbjct: 203 DKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CGS+ A+EVF M E++VVSW+AMISGLAMNG G++AIE+F M + G+ P++QT T
Sbjct: 263 SRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 239 GVLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+LSACSH GLVDEGMMF DRM S +F I PN+HHYGC+VDLLGRA LLD+AY LI SM
Sbjct: 323 GLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSME 382
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
+KPDSTIWRTLLGACR+H +V LGERVI HLIE KA+E+GDYVLLLN YSSVG WEKV E
Sbjct: 383 MKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTE 442
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
LR M +K +QT PGCS I L+G VHEF+VDDVSHPR EIY+ML EIN+QLKIAGYVAE
Sbjct: 443 LRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 418 ITSELHNLGA-EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
ITSELHNL + EEKG AL YHSEKLAIAFG+L TPP TTIRV KNLR CVDCHNFAK +S
Sbjct: 503 ITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNFAKFVS 562
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
VY+R VI+RDR RFHHF+ G CSCND+W
Sbjct: 563 DVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana] gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana] gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/509 (67%), Positives = 414/509 (81%), Gaps = 4/509 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+RA+S+S +P EGF LF +R+ +P NP + SFA+KCC+K L+GGLQIH ++ D
Sbjct: 83 MIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ DS LMTTLMDLYST E S +ACK+FDEIP+RDTV+WNVL SCY+RN+RTRD L LF
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLF 202
Query: 120 DNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D + + GC KPD VTCLL LQACA+LGAL+FG+++H +I E+G +NL N+L++MY
Sbjct: 203 DKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CGS+ A++VF GM E++VVSW+A+ISGLAMNG G++AIE+F M + G+ P++QT T
Sbjct: 263 SRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 239 GVLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+LSACSH GLV EGMMF DRM S +F I PN+HHYGCVVDLLGRA LLD+AY LI SM
Sbjct: 323 GLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSME 382
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
+KPDSTIWRTLLGACR+H V LGERVI HLIELKA+E+GDYVLLLN YS+VG WEKV E
Sbjct: 383 MKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTE 442
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
LR M EK + T PGCS I L+G VHEF+VDDVSHPR EIY+ML EIN+QLKIAGYVAE
Sbjct: 443 LRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 418 ITSELHNLGA-EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
ITSELHNL + EEKG AL YHSEKLAIAFG+L TPPGTTIRV KNLR CVDCHNFAK +S
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVS 562
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
VY+R VI+RDR RFHHF+ G CSCND+W
Sbjct: 563 DVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g47530-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/508 (67%), Positives = 406/508 (79%), Gaps = 3/508 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGG--LQIHARVLR 58
M+RA SMS SP++G L+ MR++ I +P + SF +K C++ L +Q+H + +
Sbjct: 8 MIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCNIFK 67
Query: 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCL 118
G+Q D+ L+T +MDLYS ++ +ACK+FDE+P RDTVAWNV+ISC IRN RTRDAL L
Sbjct: 68 YGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSL 127
Query: 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
FD L C+PDDVTCLL+LQACAHL ALEFGE+IH Y+ EHGYG +NL N+LI+MY
Sbjct: 128 FDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALISMY 187
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CG L A EVFKG K+VVSWSAMISGLAMNG+GR+AIESF M R G+ PDDQT T
Sbjct: 188 SRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLT 247
Query: 239 GVLSACSHCGLVDEGMM-FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
GVLSACS+ G+VDEGMM F DRMS++FG+ PN+HHYGC+VDLLG AGLLD+A QLI SM
Sbjct: 248 GVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMV 307
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
KPDST WRTLLGACRIH HVTLGERVI HLIELKAQE+GD+VLLLN+YSS G WEKV E
Sbjct: 308 EKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDHVLLLNIYSSAGHWEKVAE 367
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
+R+ M K +QTTPGCSTI LKGVVHEFVVDDVSH R +EIY+ LDEIN QL+IAGYV E
Sbjct: 368 VRKLMKNKSIQTTPGCSTIELKGVVHEFVVDDVSHTRNHEIYETLDEINHQLRIAGYVVE 427
Query: 418 ITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477
++SELH + +EKG LS+HSEKLAIAFGVLATPPGTT+RVA NLRICVDC NF K SG
Sbjct: 428 LSSELHKMDDKEKGYVLSHHSEKLAIAFGVLATPPGTTLRVANNLRICVDCFNFLKHFSG 487
Query: 478 VYNREVIIRDRLRFHHFREGRCSCNDYW 505
VYN +VI+RD RFHHFR G CSC++YW
Sbjct: 488 VYNGDVILRDHNRFHHFRGGCCSCSNYW 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor] gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 298/498 (59%), Positives = 374/498 (75%), Gaps = 4/498 (0%)
Query: 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLM 68
S P + +MR N F + +K C+L Q+HA V+ +G+ D+ L
Sbjct: 101 SDPSDALRFLRRMRALGRRGNAFTLAILLK---PRCALAHARQLHANVVAEGHLRDALLA 157
Query: 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG 128
T+LM Y+ A KLF E+P RD VAWNVLISC RN+RT+DAL LF+ + +SG
Sbjct: 158 TSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEMRGRDSG 217
Query: 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188
+PDDVTC+L+LQAC LGAL+FGE++ Y EHGYG+K+ + NSLIAMYS+CG + A+
Sbjct: 218 AEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAY 277
Query: 189 EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248
VF G P+K VV+WSAMISGLA NG G DAI +F M R+ V PD+QTFTGVLSACSH G
Sbjct: 278 RVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSG 337
Query: 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS-MGVKPDSTIWRT 307
LVDEG F D M ++G+ PN+ HYGC+VDL+GRAGLLD+AY+L+T+ M V PD+TIWRT
Sbjct: 338 LVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRT 397
Query: 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367
LLGACRIH HV LGERVI +LIELKAQ++GDYVLLLN Y++VG+W KV E+R+ M EKG+
Sbjct: 398 LLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGI 457
Query: 368 QTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGA 427
QTTPGC+T+ G V+EF+ DD +HPR EIY+ L+EINKQL+IAGYV ++SELH+L +
Sbjct: 458 QTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSELHDLDS 517
Query: 428 EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRD 487
E K +AL+YHSEKLAIAF +L TP IR+AKNLR+CVDCHNF KV SG+YNR VI+RD
Sbjct: 518 EGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNRLVIVRD 577
Query: 488 RLRFHHFREGRCSCNDYW 505
R RFHHF+ G+CSCNDYW
Sbjct: 578 RTRFHHFQGGKCSCNDYW 595
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group] gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/478 (61%), Positives = 366/478 (76%), Gaps = 4/478 (0%)
Query: 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLF 88
N F+ S + C +L Q+HA V+ +G+ D+ L T+L+ Y+ A K+F
Sbjct: 127 NAFSLSIVLGHCR---ALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVF 183
Query: 89 DEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148
DE+P RDT+AWNVLI+CY RN+RT+DAL LFD + E+G +PDDVTC+L+LQAC LGA
Sbjct: 184 DEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGA 243
Query: 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISG 208
L+FGEK+ Y +HGYG ++ + NSLI MY+KCG + A++VF P+K VV+WSAMISG
Sbjct: 244 LDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISG 303
Query: 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP 268
LA NG G+DAI +F M R+GV PD+QTFTGVLSACSH GLVDEG F D M ++ + P
Sbjct: 304 LASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKP 363
Query: 269 NIHHYGCVVDLLGRAGLLDQAYQLITS-MGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327
N+HHYGC+VDL+GRAGLLDQAY+L+ M V PD+TIWRTLLGACRIH H+ LGERVI H
Sbjct: 364 NVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINH 423
Query: 328 LIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVV 387
LIELKAQ++GDYVLLLN Y++V DW KV E+R+ M EKG+QTTPGC+T+ L G +HEF+
Sbjct: 424 LIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIA 483
Query: 388 DDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGV 447
D SHPR EIY+ LDEINK L+IAGYV ++SELH+L +E K AL+YHSEKLAIAF +
Sbjct: 484 ADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDSEGKECALAYHSEKLAIAFAL 543
Query: 448 LATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
L TP IR+AKNLR+CVDCHNF KV SGVY+R VI+RDR RFHHF+E +CSCNDYW
Sbjct: 544 LVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRDRTRFHHFKEFQCSCNDYW 601
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/498 (58%), Positives = 368/498 (73%), Gaps = 4/498 (0%)
Query: 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLM 68
S P + ++R N F + +K CSL Q+HA V+ +G+ D+ L
Sbjct: 117 SDPSDALRFLCRVRALGRRGNAFTLAILLK---PRCSLAHARQLHANVVAEGHLRDALLA 173
Query: 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG 128
T+LM Y+ A KLFDE+P RD VAWNVLI+CY RN+RT+DAL LF+ + ++S
Sbjct: 174 TSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSE 233
Query: 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188
+PDDVTC+L+LQAC+ LGAL+FGE++ Y EHGYG ++ + NSLI MY +CG + A+
Sbjct: 234 SEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAY 293
Query: 189 EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248
VF G P+K VV+W+AMISGLA NG G DAI F M R+ V PD+QTFTGVLSACSH G
Sbjct: 294 RVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSG 353
Query: 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS-MGVKPDSTIWRT 307
LVDEG F D M ++G+ PN+ HYGC+VDL+GRAGLLD+AY+ +T+ M V PD+TIWRT
Sbjct: 354 LVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRT 413
Query: 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367
LLGACRIH HV LGERVI +LIELKAQ++GDYVLLLN Y++VG+W KV E+R+ M E+G+
Sbjct: 414 LLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGI 473
Query: 368 QTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGA 427
QTTPGC+T+ G VHEF+ DD +HPR EIY+ L EI KQL+IAGYV ++SELH+L +
Sbjct: 474 QTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSELHDLDS 533
Query: 428 EEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRD 487
E K +AL+YHSEKLAIAF +L TP IR+AKNLR+CVDCHNF K+ S +Y R VI+RD
Sbjct: 534 EGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRRIVIVRD 593
Query: 488 RLRFHHFREGRCSCNDYW 505
R RFHHF+ G+CSCNDYW
Sbjct: 594 RTRFHHFQGGKCSCNDYW 611
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| TAIR|locus:2079187 | 591 | AT3G47530 "AT3G47530" [Arabido | 1.0 | 0.854 | 0.677 | 5.3e-191 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.996 | 0.678 | 0.422 | 5e-115 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.902 | 0.617 | 0.443 | 2.4e-108 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.887 | 0.693 | 0.460 | 6.3e-108 | |
| TAIR|locus:2102514 | 581 | AT3G56550 [Arabidopsis thalian | 0.992 | 0.862 | 0.422 | 1.3e-107 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.996 | 0.845 | 0.406 | 1.2e-106 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.904 | 0.723 | 0.439 | 3.6e-105 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.992 | 0.830 | 0.415 | 5.8e-105 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 1.0 | 0.768 | 0.392 | 1.6e-102 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.998 | 0.578 | 0.4 | 2.6e-102 |
| TAIR|locus:2079187 AT3G47530 "AT3G47530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1851 (656.6 bits), Expect = 5.3e-191, P = 5.3e-191
Identities = 345/509 (67%), Positives = 414/509 (81%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
M+RA+S+S +P EGF LF +R+ +P NP + SFA+KCC+K L+GGLQIH ++ D
Sbjct: 83 MIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSD 142
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ DS LMTTLMDLYST E S +ACK+FDEIP+RDTV+WNVL SCY+RN+RTRD L LF
Sbjct: 143 GFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLF 202
Query: 120 DNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
D + + GC KPD VTCLL LQACA+LGAL+FG+++H +I E+G +NL N+L++MY
Sbjct: 203 DKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMY 262
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
S+CGS+ A++VF GM E++VVSW+A+ISGLAMNG G++AIE+F M + G+ P++QT T
Sbjct: 263 SRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLT 322
Query: 239 GVLSACSHCGLVDEGMMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+LSACSH GLV EGMMF DRM S +F I PN+HHYGCVVDLLGRA LLD+AY LI SM
Sbjct: 323 GLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSME 382
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
+KPDSTIWRTLLGACR+H V LGERVI HLIELKA+E+GDYVLLLN YS+VG WEKV E
Sbjct: 383 MKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTE 442
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
LR M EK + T PGCS I L+G VHEF+VDDVSHPR EIY+ML EIN+QLKIAGYVAE
Sbjct: 443 LRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAE 502
Query: 418 ITSELHNLGAEE-KGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
ITSELHNL +EE KG AL YHSEKLAIAFG+L TPPGTTIRV KNLR CVDCHNFAK +S
Sbjct: 503 ITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVS 562
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
VY+R VI+RDR RFHHF+ G CSCND+W
Sbjct: 563 DVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 214/507 (42%), Positives = 319/507 (62%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ + + +E LF+ M + + + + C + S+ G Q+H + G
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + +++ L+DLYS + AC LF+ +P +D ++WN LI Y ++AL LF
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH--GYGSKMNLCNSLIAMY 178
+ R SG P+DVT L +L ACAHLGA++ G IH YI + G + +L SLI MY
Sbjct: 357 EMLR--SGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCG + A +VF + K + SW+AMI G AM+G + + F M++ G+ PDD TF
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+LSACSH G++D G M++D+ + P + HYGC++DLLG +GL +A ++I M +
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+PD IW +LL AC++H +V LGE E+LI+++ + G YVLL N+Y+S G W +V +
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R +N+KG++ PGCS+I + VVHEF++ D HPR EIY ML+E+ L+ AG+V +
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDT 654
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
+ L + E K AL +HSEKLAIAFG+++T PGT + + KNLR+C +CH K++S +
Sbjct: 655 SEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKI 714
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
Y RE+I RDR RFHHFR+G CSCNDYW
Sbjct: 715 YKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 204/460 (44%), Positives = 299/460 (65%)
Query: 48 GGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK-LFDEIPQRDTVAWNVLISCY 106
G ++ R+ + D+ TT++D Y+ E +EA + + + +PQ+D VAWN LIS Y
Sbjct: 281 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE-DYEAAREVLNSMPQKDIVAWNALISAY 339
Query: 107 IRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS 166
+N + +AL +F L +++ K + +T + L ACA +GALE G IH YI +HG
Sbjct: 340 EQNGKPNEALIVFHELQLQKN-MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRM 398
Query: 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226
++ ++LI MYSKCG L + EVF + ++DV WSAMI GLAM+G G +A++ F MQ
Sbjct: 399 NFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQ 458
Query: 227 RAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286
A V P+ TFT V ACSH GLVDE +M ++GI+P HY C+VD+LGR+G L
Sbjct: 459 EANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYL 518
Query: 287 DQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346
++A + I +M + P +++W LLGAC+IH ++ L E L+EL+ + G +VLL N+Y
Sbjct: 519 EKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578
Query: 347 SSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEIN 406
+ +G WE V ELR+ M GL+ PGCS+I + G++HEF+ D +HP ++Y L E+
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVM 638
Query: 407 KQLKIAGYVAEITSELHNLGAEE-KGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRIC 465
++LK GY EI+ L + EE K +L+ HSEKLAI +G+++T IRV KNLR+C
Sbjct: 639 EKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVC 698
Query: 466 VDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
DCH+ AK++S +Y+RE+I+RDR RFHHFR G+CSCND+W
Sbjct: 699 GDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 208/452 (46%), Positives = 298/452 (65%)
Query: 56 VLRDGYQLDSQLM--TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTR 113
V+ D + D +++ ++D Y A LFD++ QR V+WN +IS Y N +
Sbjct: 197 VMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFK 256
Query: 114 DALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173
DA+ +F + + + +P+ VT + VL A + LG+LE GE +H Y + G L ++
Sbjct: 257 DAVEVFREMKKGD--IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 174 LIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD 233
LI MYSKCG + A VF+ +P ++V++WSAMI+G A++G DAI+ F M++AGV P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293
D + +L+ACSH GLV+EG + +M G+ P I HYGC+VDLLGR+GLLD+A + I
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 294 TSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353
+M +KPD IW+ LLGACR+ +V +G+RV L+++ +SG YV L N+Y+S G+W
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 354 KVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAG 413
+V E+R M EK ++ PGCS I + GV+HEFVV+D SHP+ EI ML EI+ +L++AG
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554
Query: 414 YVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAK 473
Y T L NL E+K N L YHSEK+A AFG+++T PG IR+ KNLRIC DCH+ K
Sbjct: 555 YRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 614
Query: 474 VLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
++S VY R++ +RDR RFHHF++G CSC DYW
Sbjct: 615 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2102514 AT3G56550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 215/509 (42%), Positives = 315/509 (61%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNP--FACSFAIKCCMKFCSLMGGLQIHARVLR 58
++R +S SSSP + +M + + P F +FA+K C + S+ L+IH V+R
Sbjct: 77 LIRGFSNSSSPLNSILFYNRMLLSSV-SRPDLFTFNFALKSCERIKSIPKCLEIHGSVIR 135
Query: 59 DGYQLDSQLMTTLMDLYSTFEKSFE-ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALC 117
G+ D+ + T+L+ YS S E A K+FDE+P RD V+WNV+I C+ AL
Sbjct: 136 SGFLDDAIVATSLVRCYSA-NGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALS 194
Query: 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAM 177
++ + E G D T + +L +CAH+ AL G +HR + S + + N+LI M
Sbjct: 195 MYKRMGNE--GVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDM 252
Query: 178 YSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237
Y+KCGSL A VF GM ++DV++W++MI G ++GHG +AI F M +GV P+ TF
Sbjct: 253 YAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITF 312
Query: 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMG 297
G+L CSH GLV EG+ + MS F + PN+ HYGC+VDL GRAG L+ + ++I +
Sbjct: 313 LGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASS 372
Query: 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357
D +WRTLLG+C+IH+++ LGE ++ L++L+A +GDYVL+ ++YS+ D +
Sbjct: 373 CHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFAS 432
Query: 358 LREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAE 417
+R+ + LQT PG S I + VH+FVVDD HP IY L E+ + +AGY E
Sbjct: 433 MRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPE 492
Query: 418 ITSELH-NLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
++ L G+A + HSEKLAIA+G++ T GTT+R+ KNLR+C DCH+F K +S
Sbjct: 493 DSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVS 552
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+NRE+I+RDR+RFHHF +G CSCNDYW
Sbjct: 553 KAFNREIIVRDRVRFHHFADGICSCNDYW 581
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 206/507 (40%), Positives = 316/507 (62%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59
++R Y+ + F L+ +MR + + F IK + G IH+ V+R
Sbjct: 91 LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRS 150
Query: 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF 119
G+ + +L+ LY+ A K+FD++P++D VAWN +I+ + N + +AL L+
Sbjct: 151 GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALY 210
Query: 120 DNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179
+N + G KPD T + +L ACA +GAL G+++H Y+ + G ++ N L+ +Y+
Sbjct: 211 TEMNSK--GIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 180 KCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFT 238
+CG + A +F M +K+ VSW+++I GLA+NG G++AIE F M+ G+ P + TF
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+L ACSHCG+V EG + RM +++ I P I H+GC+VDLL RAG + +AY+ I SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
+P+ IWRTLLGAC +H L E +++L+ SGDYVLL N+Y+S W V+++
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R+ M G++ PG S + + VHEF++ D SHP+ + IY L E+ +L+ GYV +I
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Query: 419 TSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGV 478
++ ++ EEK NA+ YHSEK+AIAF +++TP + I V KNLR+C DCH K++S V
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568
Query: 479 YNREVIIRDRLRFHHFREGRCSCNDYW 505
YNRE+++RDR RFHHF+ G CSC DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 202/460 (43%), Positives = 292/460 (63%)
Query: 48 GGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK-LFDEIPQRDTVAWNVLISCY 106
GG + A+ + D S + +T M + + EA + LFD + +RD V+WNV+I Y
Sbjct: 174 GGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGY 233
Query: 107 IRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS 166
++ DAL LF L E KPD++T + L AC+ +GALE G IH ++
Sbjct: 234 AQHGFPNDALMLFQKLLAEGKP-KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292
Query: 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226
+ +C LI MYSKCGSL A VF P KD+V+W+AMI+G AM+G+ +DA+ F MQ
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 227 R-AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285
G+ P D TF G L AC+H GLV+EG+ + M +++GI P I HYGC+V LLGRAG
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 286 LDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345
L +AY+ I +M + DS +W ++LG+C++H LG+ + E+LI L + SG YVLL N+
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472
Query: 346 YSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEI 405
Y+SVGD+E V ++R M EKG+ PG STI ++ VHEF D H + EIY ML +I
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532
Query: 406 NKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRIC 465
++++K GYV + L +L EK +L HSE+LAIA+G+++T PG+ +++ KNLR+C
Sbjct: 533 SERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 592
Query: 466 VDCHNFAKVLSGVYNREVIIRDRLRFHHFREGRCSCNDYW 505
DCH K++S + R++++RDR RFHHF +G CSC D+W
Sbjct: 593 SDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 211/508 (41%), Positives = 307/508 (60%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M R YS ++P E F LF ++ + I + + +K C +L G Q+H ++ G
Sbjct: 100 MARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLG 159
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ + TL+++Y+ E A +FD I + V +N +I+ Y R R +AL LF
Sbjct: 160 LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLF- 218
Query: 121 NLNREESG--CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178
RE G KP+++T L VL +CA LG+L+ G+ IH+Y +H + + + +LI M+
Sbjct: 219 ---REMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMF 275
Query: 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238
+KCGSL A +F+ M KD +WSAMI A +G ++ F M+ V PD+ TF
Sbjct: 276 AKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFL 335
Query: 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGV 298
G+L+ACSH G V+EG + +M FGI+P+I HYG +VDLL RAG L+ AY+ I + +
Sbjct: 336 GLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPI 395
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358
P +WR LL AC H ++ L E+V E + EL GDYV+L NLY+ WE V L
Sbjct: 396 SPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSL 455
Query: 359 REFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418
R+ M ++ PGCS+I + VVHEF D ++++ LDE+ K+LK++GYV +
Sbjct: 456 RKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDT 515
Query: 419 TSELH-NLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477
+ +H N+ +EK L YHSEKLAI FG+L TPPGTTIRV KNLR+C DCHN AK++S
Sbjct: 516 SMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISL 575
Query: 478 VYNREVIIRDRLRFHHFREGRCSCNDYW 505
++ R+V++RD RFHHF +G+CSC D+W
Sbjct: 576 IFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 200/509 (39%), Positives = 306/509 (60%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKF-CS---LMGGLQIHARV 56
+ RA +++ EE L+ KM + + ++ F ++ +K C+ C+ LM G +IHA +
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208
Query: 57 LRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDAL 116
R GY +MTTL+D+Y+ F A +F +P R+ V+W+ +I+CY +N + +AL
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268
Query: 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176
F + RE P+ VT + VLQACA L ALE G+ IH YI G S + + ++L+
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328
Query: 177 MYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236
MY +CG L + VF M ++DVVSW+++IS ++G+G+ AI+ F M G P T
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVT 388
Query: 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296
F VL ACSH GLV+EG + M +D GI P I HY C+VDLLGRA LD+A +++ M
Sbjct: 389 FVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM 448
Query: 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356
+P +W +LLG+CRIH +V L ER L L+ + +G+YVLL ++Y+ W++VK
Sbjct: 449 RTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVK 508
Query: 357 ELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVA 416
+++ + +GLQ PG + ++ ++ FV D +P + +I+ L ++ + +K GY+
Sbjct: 509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIP 568
Query: 417 EITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLS 476
+ L+ L EEK + HSEKLA+AFG++ T G IR+ KNLR+C DCH F K +S
Sbjct: 569 QTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFIS 628
Query: 477 GVYNREVIIRDRLRFHHFREGRCSCNDYW 505
+E+++RD RFH F+ G CSC DYW
Sbjct: 629 KFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 202/505 (40%), Positives = 298/505 (59%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y+ E LFE+M ++ I + + + + CC ++ L G ++H + +
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
D + LMD+Y+ EA +F E+ +D ++WN +I Y +N +AL LF
Sbjct: 428 LGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF- 486
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
NL EE PD+ T VL ACA L A + G +IH YI +GY S ++ NSL+ MY+K
Sbjct: 487 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG+L +A +F + KD+VSW+ MI+G M+G G++AI F M++AG+ D+ +F +
Sbjct: 547 CGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSL 606
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L ACSH GLVDEG F + M + I P + HY C+VD+L R G L +AY+ I +M + P
Sbjct: 607 LYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP 666
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D+TIW LL CRIH V L E+V E + EL+ + +G YVL+ N+Y+ WE+VK LR+
Sbjct: 667 DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRK 726
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
+ ++GL+ PGCS I +KG V+ FV D S+P I L ++ ++ GY
Sbjct: 727 RIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKY 786
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
L + EK AL HSEKLA+A G++++ G IRV KNLR+C DCH AK +S +
Sbjct: 787 ALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTR 846
Query: 481 REVIIRDRLRFHHFREGRCSCNDYW 505
RE+++RD RFH F++G CSC +W
Sbjct: 847 REIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SN85 | PP267_ARATH | No assigned EC number | 0.6777 | 1.0 | 0.8544 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 505 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-128 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-125 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-43 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-34 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-22 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 394 bits (1013), Expect = e-128
Identities = 189/503 (37%), Positives = 284/503 (56%), Gaps = 5/503 (0%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y + P++ + M Q + + + + C L G+++H R G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ L+++YS + +A ++F IP++D ++W +I+ N R +AL F
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
+ KP+ VT + L ACA +GAL G++IH ++ G G L N+L+ +Y +
Sbjct: 480 QM---LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
CG + A+ F EKDVVSW+ +++G +G G A+E F M +GV PD+ TF +
Sbjct: 537 CGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
L ACS G+V +G+ + M + + I PN+ HY CVVDLLGRAG L +AY I M + P
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655
Query: 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360
D +W LL ACRIH+HV LGE +H+ EL G Y+LL NLY+ G W++V +R+
Sbjct: 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715
Query: 361 FMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITS 420
M E GL PGCS + +KG VH F+ DD SHP+I EI +L+ +++K +G +S
Sbjct: 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS 775
Query: 421 ELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480
+ + K + HSE+LAIAFG++ T PG I V KNL +C +CHN K +S +
Sbjct: 776 SMDEIEV-SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834
Query: 481 REVIIRDRLRFHHFREGRCSCND 503
RE+ +RD +FHHF++G CSC D
Sbjct: 835 REISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-125
Identities = 183/495 (36%), Positives = 278/495 (56%), Gaps = 2/495 (0%)
Query: 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT 70
E F LF +M + P ++ S G Q+H VL+ G D+ +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCK 130
L+D+YS +A +FD +P++ TVAWN +++ Y + + +ALCL+ + +SG
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM--RDSGVS 322
Query: 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEV 190
D T ++++ + L LE ++ H + G+ + +L+ +YSK G + A V
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382
Query: 191 FKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250
F MP K+++SW+A+I+G +G G A+E F M GV P+ TF VLSAC + GL
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLG 310
++G MS++ I P HY C+++LLGR GLLD+AY +I KP +W LL
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502
Query: 311 ACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370
ACRIHK++ LG E L + ++ +YV+LLNLY+S G + ++ E + KGL
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
Query: 371 PGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEK 430
P C+ I +K H F D HP+ EIYQ LDE+ K++ GYVAE L ++ +E+
Sbjct: 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE 622
Query: 431 GNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVIIRDRLR 490
+ YHSEKLAIAFG++ T T +++ ++ RIC DCH K ++ V RE+++RD R
Sbjct: 623 KVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASR 682
Query: 491 FHHFREGRCSCNDYW 505
FHHF+ G+CSC DYW
Sbjct: 683 FHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 4e-43
Identities = 94/315 (29%), Positives = 164/315 (52%), Gaps = 4/315 (1%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
+V Y+ + +E L+ +M + + + ++ C L G ++HA V+R G
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
++LD ++ L+ +Y A +FD +P+RD ++WN +IS Y N + L LF
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF- 276
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180
E PD +T V+ AC LG G ++H Y+ + G+ +++CNSLI MY
Sbjct: 277 -FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
Query: 181 CGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240
GS G A +VF M KD VSW+AMISG NG A+E++ M++ V PD+ T V
Sbjct: 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300
LSAC+ G +D G+ L +++ G++ + ++++ + +D+A ++ ++ K
Sbjct: 396 LSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK- 453
Query: 301 DSTIWRTLLGACRIH 315
D W +++ R++
Sbjct: 454 DVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-34
Identities = 84/318 (26%), Positives = 151/318 (47%), Gaps = 18/318 (5%)
Query: 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY 61
+RA E+ L E M++ R+P + A + C ++ G ++ +R L
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121
L +L ++ ++ F + A +F ++P+RD +WNVL+ Y + +ALCL+
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 122 LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181
+ +G +PD T VL+ C + L G ++H ++ G+ +++ N+LI MY KC
Sbjct: 178 M--LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235
Query: 182 GSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241
G + A VF MP +D +SW+AMISG NG + +E F M+ V PD T T V+
Sbjct: 236 GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295
Query: 242 SACSHCGLVDEGMMFLDRMSKDF-------GILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294
SAC ++ +R+ ++ G ++ ++ + G +A ++ +
Sbjct: 296 SAC--------ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 295 SMGVKPDSTIWRTLLGAC 312
M K D+ W ++
Sbjct: 348 RMETK-DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 116/460 (25%), Positives = 210/460 (45%), Gaps = 33/460 (7%)
Query: 13 EGFYLFEKMRQKRIPTNPFACSFA-IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTL 71
E LFE + T P + A ++ C+ S+ ++ V G++ D +M +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 72 MDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP 131
+ ++ +A +LFDE+P+R+ +W +I + R+A LF + + S +P
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224
Query: 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191
T +++L+A A LG+ G+++H + + G + +LI MYSKCG + A VF
Sbjct: 225 R--TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 192 KGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251
GMPEK V+W++M++G A++G+ +A+ + M+ +GV D TF+ ++ S L++
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 252 ---EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308
+ L R I+ N +VDL + G ++ A + M K + W L
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANT----ALVDLYSKWGRMEDARNVFDRMPRK-NLISWNAL 397
Query: 309 LGACRIHKHVTLGERVIEHLI-ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367
+ H T + E +I E A ++ +L+ G E+ E+ + M+E
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-H 456
Query: 368 QTTP-----GC--STIGLKGVVHE---FVVDDVSHPRINEIYQMLD--EINKQLKIAGYV 415
+ P C +G +G++ E + P +N +L I+K L++
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516
Query: 416 AEITSELHNLGAEEKGN-----ALSYHSEKLAIAFGVLAT 450
AE +L+ +G E+ N L S + A A V+ T
Sbjct: 517 AE---KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-22
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 7/230 (3%)
Query: 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60
M+ Y++ EE L+ +MR + + F S I+ + L Q HA ++R G
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 61 YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFD 120
+ LD T L+DLYS + + +A +FD +P+++ ++WN LI+ Y + R A+ +F+
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
Query: 121 NLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE-HGYGSKMNLCNSLIAMYS 179
+ E G P+ VT L VL AC + G E G +I + +SE H + +I +
Sbjct: 416 RMIAE--GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 180 KCGSLGMAFEVFKGMPEKDVVS-WSAMISGLAMNGH---GRDAIESFGAM 225
+ G L A+ + + P K V+ W+A+++ ++ + GR A E M
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 6e-20
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 21/131 (16%)
Query: 371 PGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEE- 429
PGC + + D SHP +E+ +++K+ G V E H++ AEE
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 430 -----KGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYNREVI 484
KG L+ H+EK A+A+G TT + R+C DCH F + ++ RE+I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYG-----LLTTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 485 IRDRLRFHHFR 495
+RD RFHHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-13
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 187 AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAM---QRAGVFPDDQTFTGVLSA 243
AF K + + +++ ++S A +D + + Q AG+ D + +T ++S
Sbjct: 425 AFRFAKLIRNPTLSTFNMLMSVCA---SSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 244 CSHCGLVDEGMMF--LDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA---YQLITSMGV 298
C+ G VD MF M G+ N+H +G ++D RAG + +A Y ++ S V
Sbjct: 482 CAKSGKVD--AMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 299 KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSS---VGDW 352
KPD ++ L+ AC V +R + L E+KA+ D++ + L + G
Sbjct: 539 KPDRVVFNALISACGQSGAV---DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 353 EKVKELREFMNEKGLQTTPGCSTIGL 378
++ KE+ + ++E ++ TP TI +
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAV 621
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 11/209 (5%)
Query: 111 RTRDALCLFDNLNREESGC--KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM 168
R R+AL LF+ L E+GC T +++AC L ++ + ++ ++ G+
Sbjct: 102 RHREALELFEIL---EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 169 NLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228
+ N ++ M+ KCG L A +F MPE+++ SW +I GL G+ R+A F M
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288
G + +TF +L A + G G L G++ + ++D+ + G ++
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQ-LHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 289 AYQLITSMGVKPDSTI--WRTLLGACRIH 315
A + M P+ T W ++L +H
Sbjct: 278 ARCVFDGM---PEKTTVAWNSMLAGYALH 303
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 72/324 (22%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 88 FDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNR--------EESGCKPDDVTCLLV 139
+ + +VA + S + N + R ALC L + +E D+ + +
Sbjct: 34 GRKRSRGLSVAASSSSSTHDSNSQLR-ALCSHGQLEQALKLLESMQELRVPVDEDAYVAL 92
Query: 140 LQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV 199
+ C A+E G ++ + L N++++M+ + G L A+ VF MPE+D+
Sbjct: 93 FRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL 152
Query: 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS-------------- 245
SW+ ++ G A G+ +A+ + M AGV PD TF VL C
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 246 ---------------------HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284
CG V + DRM + I N G + G
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 285 LLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL--- 341
L + + + + V PD +++ AC + LG + H +K + D +
Sbjct: 273 L--ELFFTMRELSVDPDLMTITSVISACELLGDERLGREM--HGYVVKTGFAVDVSVCNS 328
Query: 342 LLNLYSSVGDWEKVKELREFMNEK 365
L+ +Y S+G W + +++ M K
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETK 352
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 68/280 (24%), Positives = 111/280 (39%), Gaps = 50/280 (17%)
Query: 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP-- 195
+++ CA ++ ++ R + E G + L +LI+ +K G + FEVF M
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 196 --EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEG 253
E +V ++ A+I G A G A ++G M+ V PD F ++SAC G VD
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 254 MMFLDRM-SKDFGILPNIHHYGCVVDLLGRAGLLDQA---YQLI---------------- 293
L M ++ I P+ G ++ AG +D+A YQ+I
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 294 -------------------TSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334
GVKPD + L+ H ++ E L + + Q
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GHAGDLDKAFEILQDARKQ 678
Query: 335 --ESG--DYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370
+ G Y L+ S+ +W+K EL E + L+ T
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 6e-11
Identities = 62/285 (21%), Positives = 108/285 (37%), Gaps = 65/285 (22%)
Query: 95 DTVAWNVLISCYIRN---QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151
D V +N LIS ++ R D L + E PD +T +++ACA+ G ++
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLA---EMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 152 GEKIHRYISEHG-------YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSA 204
+++++ I E+ Y +N C S+ G A ++ M +K V
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSC-------SQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 205 MISGLA-MNGHGRDAIESFGAMQRA---GVFPDDQTFTGVLSACSHCG------------ 248
S L + GH D ++F +Q A G+ +++ ++ ACS+
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 249 -----------------------LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285
+ + + L M K G+ PN Y ++ R
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDD 769
Query: 286 LDQAYQLITSM---GVKPDSTIWRTLLGAC--RIHKHVTLGERVI 325
D L++ G+KP+ + R + G C R K LGE V+
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVV 814
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246
DVV+++ +I G G +A++ F M++ G+ P+ T++ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145
D V +N LI Y + + +AL LF+ ++ G KP+ T +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFN--EMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 115 ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174
AL ++D++ ++ G KPD+V ++ H G L+ +I + + G +SL
Sbjct: 633 ALSIYDDMKKK--GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 175 IAMYSKCGSLGMAFEVF---KGMPEKDVVS-WSAMISGLAMNGHGRDAIESFGAMQRAGV 230
+ S + A E++ K + + VS +A+I+ L A+E M+R G+
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL----------- 279
P+ T++ +L A D G+ L + +D GI PN+ C+ L
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACAL 809
Query: 280 --------LGRAGLLDQ-------AYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERV 324
GR + ++ Y+ S G P + +LG ++ TL R+
Sbjct: 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869
Query: 325 IEHL 328
IE+L
Sbjct: 870 IENL 873
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 171 CNSLIAMYSKCGSLGMAFEVFKGMPEK----DVVSWSAMISGLA 210
N+LI Y K G + A ++F M ++ +V ++S +I GL
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 130 KPDDVTCLLVLQACAHLGAL--------EFGEKIHRYISEH-GYGSKMNLCNSLIAMYSK 180
KPD V ++ AC GA+ E + H +H G+ M C +
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC-------AN 591
Query: 181 CGSLGMAFEVFKGMPEKDVVS----WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236
G + A EV++ + E ++ ++ ++ + G A+ + M++ GV PD+
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA---YQLI 293
F+ ++ H G +D+ L K GI Y ++ A +A Y+ I
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 294 TSMGVKPDSTIWRTLLGA 311
S+ ++P + L+ A
Sbjct: 711 KSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD 133
V +N LI + R +AL LF + +E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM--KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230
V+++++ISG G +A+E F M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.46 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.01 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.99 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.78 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.53 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.13 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.83 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.48 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.42 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.36 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.35 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.32 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.29 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.16 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.07 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.96 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.85 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.52 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.47 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.27 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.24 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.24 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.04 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.94 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.87 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.35 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.32 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.24 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.94 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.41 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.36 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.22 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.1 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.95 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.86 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.85 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.35 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.77 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.3 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.04 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.85 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.65 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.99 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.76 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.97 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.97 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.62 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.36 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.89 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.78 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.74 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.75 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.75 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.0 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.62 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.44 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.2 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.85 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.46 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.9 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.68 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.68 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.19 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 83.15 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.11 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.98 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.52 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.44 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.32 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.7 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.69 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-106 Score=842.09 Aligned_cols=503 Identities=36% Similarity=0.658 Sum_probs=497.1
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||++|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..++++|+++|+++|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|+.|+++|+++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|++++|.++|..|.
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999987899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQ 400 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
|..+++++.+.+|.+..+|..|+++|++.|+|++|.++++.|++.|+++.|+++|+++++.+|.|++++..||+.+++++
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhcccC
Q 010642 401 MLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480 (505)
Q Consensus 401 ~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (505)
.+.++..+|++.||.||+.++++++++++++..+.+|||+||++||++.+|++.+|||+||||+|+|||+|+|+||++.+
T Consensus 593 ~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 672 (697)
T PLN03081 593 KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK 672 (697)
T ss_pred HHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCccccccCCccCCCCCC
Q 010642 481 REVIIRDRLRFHHFREGRCSCNDYW 505 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~~~~w 505 (505)
|+|+|||.+|||||++|+|||+|||
T Consensus 673 r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 673 REIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred eEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-100 Score=815.97 Aligned_cols=498 Identities=38% Similarity=0.729 Sum_probs=489.6
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~---~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh---CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 599999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999976799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQ 400 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
|+.+.+++.+++|.++..|..|.+.|+..|+|++|.++++.|++.|++++|++|||++++.+|.|..++.+||+.++|+.
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhcccC
Q 010642 401 MLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGVYN 480 (505)
Q Consensus 401 ~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (505)
.|+++..+|++.||.||+..++ +.++++|+..+.+|||+||++||++++|++++|||+||+|+|+|||+++|+||++.+
T Consensus 756 ~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~ 834 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVR 834 (857)
T ss_pred HHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhC
Confidence 9999999999999999999888 457788999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCccccccCCccCCCC
Q 010642 481 REVIIRDRLRFHHFREGRCSCND 503 (505)
Q Consensus 481 ~~~~~~~~~~~h~~~~g~~~~~~ 503 (505)
|+|||||.+|||||++|+|||+|
T Consensus 835 r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 835 REISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred eEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-63 Score=514.36 Aligned_cols=483 Identities=21% Similarity=0.294 Sum_probs=425.9
Q ss_pred CcccchhcCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKR-IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE 79 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (505)
+|.+|.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.|+++|+++|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678899999999999999998864 789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 80 KSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|+..|..+.+.+++..+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTG 239 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 239 (505)
.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchh
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 319 (505)
++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+|.++|+.+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHH
Confidence 999999999999999999999997 999999999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCCceeEEEECCEEEEEEecCCCCcchHH
Q 010642 320 LGERVIEHLIELK-AQESGDYVLLLNLYSSVGDWEKVKELREFMNE-KGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINE 397 (505)
Q Consensus 320 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (505)
+|.++|++|.+.+ .|+..+|..++.+|++.|++++|.++|+.|.+ .|+.|+..++..++ ..+...++.++
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li--------~~l~r~G~~~e 480 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI--------ELLGREGLLDE 480 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH--------HHHHhcCCHHH
Confidence 9999999999987 77889999999999999999999999999976 69999876665443 33446788888
Q ss_pred HHHHHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCCCeEEEEecccccCchhhhhHhhhc
Q 010642 398 IYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSG 477 (505)
Q Consensus 398 ~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (505)
|.+.+ ++.++.|+...+..-+..+.+.+.+..-.......+++.+......+.+.+.+..+|+..+|.+++..
T Consensus 481 A~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 481 AYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 87644 34588888865433222222221111111111112344444444566677889999999999999988
Q ss_pred ccCceE-------EEecCCccccccCCccCCC
Q 010642 478 VYNREV-------IIRDRLRFHHFREGRCSCN 502 (505)
Q Consensus 478 ~~~~~~-------~~~~~~~~h~~~~g~~~~~ 502 (505)
|..+.+ .+.-.+..|.|..|+.+..
T Consensus 554 m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 554 LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 876542 3556678899998876643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=530.92 Aligned_cols=472 Identities=22% Similarity=0.382 Sum_probs=421.3
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||++|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+++.|+.||..++|+||.+|+++|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+++|.++|++|+++|.++||+||.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|+.+.|.+++..+.
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
+.+|++.|++++|.++++.+.+. |+.|+..+|++||++|+++|++++|.++|++|. .||..+|+++|.+|.+.|+.++
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999986 999999999999999999999999999999995 5799999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEE------------------
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVV------------------ 382 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~------------------ 382 (505)
|..+|++|.+.-+|+..+|..++.+|++.|..+.+.+++..|.+.|+.++......+++...
T Consensus 474 A~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d 553 (857)
T PLN03077 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553 (857)
T ss_pred HHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 99999999876677888998888888888888888888888888887765443322211100
Q ss_pred ----EEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccccccccccCChhhhhhhh---hhhhhHHHHHHHhccCCCCCe
Q 010642 383 ----HEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNAL---SYHSEKLAIAFGVLATPPGTT 455 (505)
Q Consensus 383 ----~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~ 455 (505)
..++.++..|++.++|.+ ++++|.+.|+.||..++..-+..+.+.+.+ ....+.+...+|+.++..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 012345567888888876 555678899999998876544444433222 223344444678877776544
Q ss_pred EEEEecccccCchhhhhHhhhcccCc
Q 010642 456 IRVAKNLRICVDCHNFAKVLSGVYNR 481 (505)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (505)
++++.+.++|+.++|.++|.+|+.+
T Consensus 630 -~lv~~l~r~G~~~eA~~~~~~m~~~ 654 (857)
T PLN03077 630 -CVVDLLGRAGKLTEAYNFINKMPIT 654 (857)
T ss_pred -HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 7899999999999999999999743
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=490.68 Aligned_cols=446 Identities=17% Similarity=0.213 Sum_probs=380.2
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC----CCChhHHHHHH
Q 010642 28 TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP----QRDTVAWNVLI 103 (505)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li 103 (505)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999998 48999999999
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHhc
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE--HGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~l~~~y~~~ 181 (505)
.+|++.|++++|+++|++|.. .|+.||..||+.++.+|++.|++++|.++|.+|.+ .|+.||..+|++|+.+|+++
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~--~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRS--KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999 89999999999999999999999999999999987 67899999999999999999
Q ss_pred CCHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 182 GSLGMAFEVFKGMPE----KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 182 g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
|++++|.++|+.|.+ |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999974 5779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc-C
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK-A 333 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~ 333 (505)
++|.+. |+.|+..+|++||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+ .
T Consensus 673 ~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 673 QDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999986 99999999999999999999999999999999 889999999999999999999999999999999887 6
Q ss_pred CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECC-------------EEEEEEecC--CCCcchHHH
Q 010642 334 QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKG-------------VVHEFVVDD--VSHPRINEI 398 (505)
Q Consensus 334 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~ 398 (505)
|+..+|..|+.+|++.|++++|.+++++|.+.|+.|+..++..++.- .+..|-.+. ......++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 78899999999999999999999999999999999987654433210 000111110 011122334
Q ss_pred HHHHHHHHHHHHHcCcccccccccccCChhhhhhhhhhhhhHHHHHHHhccCCCC--CeEEEEecccccCchhhhhHhhh
Q 010642 399 YQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSEKLAIAFGVLATPPG--TTIRVAKNLRICVDCHNFAKVLS 476 (505)
Q Consensus 399 ~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 476 (505)
+ .++++|.+.|+.||..++...+.-..+.+.. .....+-..+++.+.+++ ....+++.+ |..-++|..++.
T Consensus 832 l----~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~ 904 (1060)
T PLN03218 832 L----MVYRETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLE 904 (1060)
T ss_pred H----HHHHHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHH
Confidence 4 4777889999999987665433111111111 122333345666666554 222344443 112357888888
Q ss_pred cccCceE
Q 010642 477 GVYNREV 483 (505)
Q Consensus 477 ~~~~~~~ 483 (505)
.|..+.|
T Consensus 905 em~~~Gi 911 (1060)
T PLN03218 905 EAASLGV 911 (1060)
T ss_pred HHHHcCC
Confidence 8876554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-57 Score=472.63 Aligned_cols=436 Identities=15% Similarity=0.206 Sum_probs=383.0
Q ss_pred CcccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 1 MVRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
||.+|++.|++++|+.+|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH
Q 010642 81 SFEACKLFDEIPQ----RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 81 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~ 156 (505)
+++|.++|+.|.+ ||..+||.||.+|++.|++++|.++|++|.....++.||..||++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 899999999999999999999999999997533578999999999999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999997 5799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLL 309 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll 309 (505)
|..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|++||.+|++.|++++|.++|++| |+.||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999986 99999999999999999999999999999999 8999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHh----CC-------------------CHHHHHHHHHHHHhC
Q 010642 310 GACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSS----VG-------------------DWEKVKELREFMNEK 365 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~~ 365 (505)
.+|.+.|+++.|.+++++|.+.+ .++..+|..|+.+|.+ ++ ..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999988 6677899999876432 21 236799999999999
Q ss_pred CCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccccccc---ccCChhhhhhhhhhhhhHHH
Q 010642 366 GLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSEL---HNLGAEEKGNALSYHSEKLA 442 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~la 442 (505)
|+.|+..++..++... ...+. .....+++..|...+..|+..+.. +..+. ...+.+..+.|.
T Consensus 842 Gi~Pd~~T~~~vL~cl--------~~~~~----~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~em-- 906 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCL--------QLPHD----ATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLEEA-- 906 (1060)
T ss_pred CCCCCHHHHHHHHHHh--------ccccc----HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHHHH--
Confidence 9999977665443221 01111 234455666666667666665433 32221 112344445544
Q ss_pred HHHHhccCCC
Q 010642 443 IAFGVLATPP 452 (505)
Q Consensus 443 ~~~~~~~~~~ 452 (505)
...|+.++..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 3567877654
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=189.90 Aligned_cols=106 Identities=53% Similarity=0.919 Sum_probs=94.1
Q ss_pred ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccccccccccCChhhh--------hhhhhhhhhHHHH
Q 010642 372 GCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEK--------GNALSYHSEKLAI 443 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 443 (505)
+++|+.+ |.|++|+.+||+. ++..++...||.|+...+.+++.++++ +..+.+|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 4678665 8999999999987 355567788999999999887766554 5688999999999
Q ss_pred HHHhccCCCCCeEEEEecc-cccCchhhhhHhhhcccCceEEEecCCcccccc
Q 010642 444 AFGVLATPPGTTIRVAKNL-RICVDCHNFAKVLSGVYNREVIIRDRLRFHHFR 495 (505)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 495 (505)
+||++++ +++||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889998 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-24 Score=229.91 Aligned_cols=349 Identities=13% Similarity=0.052 Sum_probs=200.4
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|++++|...|+++...+ +.+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444444443332 1133334444444444444444444444444332 22333444444444445555555554
Q ss_pred HhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 88 FDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 88 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
++.+.+ .+...|..+...|.+.|++++|+..|+++.. . .+.+...+..+..++...|++++|..+++.+.+..
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--L-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 444432 2344555555555555555555555555544 1 12233444455555555555555555555555442
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+.+..++..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+.
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHH
Confidence 33445555555555555555555555555542 23445555666666666666666666666654 34445556666
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchh
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~ 319 (505)
.++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ +
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 667777777777777777665 33445666777777777777777777777776 222 356677777777777777 6
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
+|+..++++.+..|.++..+..+..+|...|++++|.++++++.+.+.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677777777777777777777777888888888888888888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-23 Score=224.63 Aligned_cols=352 Identities=11% Similarity=0.014 Sum_probs=310.8
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.+.|++++|...|+++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..+|..+...|.+.|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 35667899999999999998875 3466778889999999999999999999998764 567889999999999999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|+.+.+ .+...|..+...|.+.|++++|...|+++.. ..+.+..++..+...+...|++++|.++++.+
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998754 4677899999999999999999999999976 23445788899999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
.+.. +.+..++..+...|.+.|++++|...|+.+. .|+..++..++..+.+.|++++|.+.++++.... +.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 9886 6678889999999999999999999999875 3555778889999999999999999999998863 3467788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH 315 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 315 (505)
..+...|...|+.++|..+|+++.+. .+++...++.+...+.+.|+ .+|+.+++++ ...| +..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 89999999999999999999999873 45677889999999999999 8899999988 4444 456788888999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|++++|...++++.+.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-21 Score=185.71 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=201.5
Q ss_pred HHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccC
Q 010642 75 YSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGA 148 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~ 148 (505)
+...|++++|...|.++.+ .+..+|..+...+...|++++|..+++.+.. .+..++ ..++..+...+...|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS--RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455666666666666653 2344566666666666667777666666655 221111 1345556666666677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------hhHHHHHHHHHHhCCChHHHHH
Q 010642 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD--------VVSWSAMISGLAMNGHGRDAIE 220 (505)
Q Consensus 149 ~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~ 220 (505)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777776666542 3455666667777777777777777776664321 1134556667778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC
Q 010642 221 SFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK 299 (505)
Q Consensus 221 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 299 (505)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... ........++.++.+|.+.|++++|.+.++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888887643 123456667777888888888888888888753 21112356778888888889999998888887 556
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS---VGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
|+...+..+...+.+.|++++|..+++++.+..|++ ..+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL-RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH-HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 777777788888899999999999999988887765 466666666654 558999999999999999888886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=179.77 Aligned_cols=289 Identities=15% Similarity=0.086 Sum_probs=242.0
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C------hhHHHHHHHHHHHC
Q 010642 37 IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR-D------TVAWNVLISCYIRN 109 (505)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~ 109 (505)
...+...|++++|...+.++++.+ +.+..++..+...|...|++++|..+++.+... + ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567799999999999999875 446678999999999999999999999987652 1 25688899999999
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK----MNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~l~~~y~~~g~~~ 185 (505)
|++++|+.+|+++.+ . .+++..++..++..+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~--~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVD--E-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHc--C-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 999999999999976 2 345678899999999999999999999999988753322 224567888899999999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 186 MAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 186 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+|...|+++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..+|...|++++|...++++.+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998763 345678888899999999999999999998754333346788899999999999999999999986
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHHHhc
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI---HKHVTLGERVIEHLIELK 332 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 332 (505)
. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+.. .|+.+++..+++++.+..
T Consensus 278 ~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 278 E---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred h---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 467777788999999999999999999987 667999999988877664 568999999999988755
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-19 Score=183.37 Aligned_cols=352 Identities=12% Similarity=0.017 Sum_probs=280.4
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.|.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+...|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 466789999999999999875 5777889999999999999999999999999876 4467788889999999999999
Q ss_pred HHHHHhcCCC---------------------------------CChhHHHHHHHH-------------------------
Q 010642 84 ACKLFDEIPQ---------------------------------RDTVAWNVLISC------------------------- 105 (505)
Q Consensus 84 A~~~~~~~~~---------------------------------~~~~~~~~li~~------------------------- 105 (505)
|+.-|..... ++..++..+...
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 9875543210 000011111000
Q ss_pred -H----------HHCCChhHHHHHHHHchhccCC-CCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 106 -Y----------IRNQRTRDALCLFDNLNREESG-CKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 106 -~----------~~~g~~~~A~~~~~~m~~~~~~-~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
+ ...+++++|++.|++... .+ ..| +...+..+...+...|++++|...++..++.. |.....|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~--~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALD--LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0 113578899999999876 33 234 34667778888889999999999999999874 44577888
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
.+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .| +...+..+...+.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC
Confidence 999999999999999999997653 46778999999999999999999999999885 34 4566778888999999
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-H-------HHHHHHHHHHhcCchh
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-T-------IWRTLLGACRIHKHVT 319 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~ 319 (505)
++++|+..|++..+. .+.+...++.+...+...|++++|.+.|++. .+.|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 999999999999863 3445778899999999999999999999987 444431 1 1222223344569999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+|...+++..+.+|.+...+..++..|...|++++|.+.|++..+.
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999999988654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=177.66 Aligned_cols=349 Identities=12% Similarity=0.107 Sum_probs=301.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQ-LMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~ 83 (505)
+-..|++++|+.+++.|++...+ ....|..+..++...|+.+.|.+.|...++.+ |+.. +.+.+....-..|++++
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 45679999999999999986432 56789999999999999999999999998764 4433 44556666667899999
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...+.+..+ | =.++|+.|...+-.+|+...|++-|++..+ +.|+ ...|..|...+...+.++.|...+.++
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 9998877655 3 257899999999999999999999999966 6666 468899999999999999999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-H
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD-VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-Q 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 235 (505)
.... +....++..+...|...|.+|-|+..|++..+ |+ +..|+.|..++-..|+..+|.+.|.+.... .|+. .
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~had 355 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHAD 355 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHH
Confidence 8764 55678888899999999999999999998864 43 468999999999999999999999999874 4554 5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGAC 312 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~ 312 (505)
..+.|...+...|.+++|..+|....+ +.|. ...++.|...|-++|++++|...+++. .++|+. ..|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 788899999999999999999999875 4455 567889999999999999999999988 889984 5899999999
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...|+.+.|.+.+.+++...|.-...+..|...|-..|+..+|..-++...+..
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999988999999999999999999999999877643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-18 Score=178.11 Aligned_cols=323 Identities=11% Similarity=0.033 Sum_probs=239.7
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.+.|++++|+.+++..+..... +...+..++.++...|++++|.+.++.+++.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 3456788889999988888876544 34455556666677889999999998888775 446677888888888889999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|++..+ .+...|..+...+...|++++|...++.+.. ..|+.......+..+...|++++|...++.+
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~----~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ----EVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888888754 3567788888888999999999988887755 2233222222233467788899998888888
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCC
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRD----AIESFGAMQRAGVFP 232 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p 232 (505)
.+....++......+..++.+.|++++|...|++..+ .+...+..+...|.+.|++++ |...|++..+. .|
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC
Confidence 7764334444555567788888999999888887653 356677788888888888875 78888888874 34
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHH-HHHH
Q 010642 233 D-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIW-RTLL 309 (505)
Q Consensus 233 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll 309 (505)
+ ...+..+...+...|++++|...+++.... -+.+...+..+...|.+.|++++|.+.++++ ...|+...+ ..+.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4 457778888888889999999888888763 2223456667788888889999998888887 455654433 3345
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.++...|+.++|...++++.+..|.+
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 67788899999999999888887765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-18 Score=184.58 Aligned_cols=397 Identities=11% Similarity=0.028 Sum_probs=273.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHH------------HHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLM------------TTL 71 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l 71 (505)
+...|++++|+..|++.++... .+...+..+..++.+.|++++|...++++++...... ...+ ..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 5568999999999999988642 2677888888999999999999999999988653221 1112 122
Q ss_pred HHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHH------
Q 010642 72 MDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQ------ 141 (505)
Q Consensus 72 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~------ 141 (505)
...+.+.|++++|+..|++..+ .+..++..+...+...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcC
Confidence 4457788999999999998764 3567788889999999999999999999876 2333 333332222
Q ss_pred ------------------------------------HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 010642 142 ------------------------------------ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 142 ------------------------------------~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 185 (505)
.+...|++++|.+.++++++.. |.++.++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2334566777777777776654 445566666777777777777
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCCHHHH
Q 010642 186 MAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ---------TFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 186 ~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a 253 (505)
+|...|+++.+ .+...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777776532 234444444445566677777777766653322222211 122345566777888888
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
..+++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..+...+...|++++|++.++.+.+.
T Consensus 593 ~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 887762 2345566778889999999999999999988 5555 4678888999999999999999999999988
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKI 411 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 411 (505)
.|+++..+..+..++...|++++|.++++++....-..++.....++.. ....-....++.++|...+++. |..
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~---~~a~~~~~~G~~~~A~~~y~~A---l~~ 740 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLR---DAARFEAQTGQPQQALETYKDA---MVA 740 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHH---HHHHHHHHcCCHHHHHHHHHHH---Hhh
Confidence 8888888889999999999999999999998765432222110000000 0001123456777887777665 344
Q ss_pred cCcccccc
Q 010642 412 AGYVAEIT 419 (505)
Q Consensus 412 ~g~~p~~~ 419 (505)
.|+.|...
T Consensus 741 ~~~~~~~p 748 (1157)
T PRK11447 741 SGITPTRP 748 (1157)
T ss_pred cCCCCCCC
Confidence 56665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-17 Score=170.25 Aligned_cols=351 Identities=11% Similarity=0.023 Sum_probs=276.2
Q ss_pred hhcCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKR--IPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+..+++.---+|....+.. -.-+......++..+.+.|+++.|..+++..+..... +......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 34445554444444433321 1113344566777888999999999999999887644 45556666677778999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...|+++.. .+...|..+...+.+.|++++|+..|++... +.|+ ...+..+...+...|++++|...+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL----AFSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999865 3677899999999999999999999999977 4454 567788889999999999999999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
.... +.+...+..+ ..+.+.|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++..... .+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 7764 3334444444 3488899999999999987643 233445566788999999999999999997642 2456
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDE----GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 309 (505)
.+..+...+...|++++ |...|++..+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788889999999986 89999999863 2335678889999999999999999999988 55564 55777788
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.++...|++++|...++++.+..|.+...+..+..++...|++++|...+++..+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998877666677889999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=163.33 Aligned_cols=339 Identities=14% Similarity=0.107 Sum_probs=290.1
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHH-HHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFA-IKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
.++...|+.+.|...|.+.++. .|+.+...+- .......|++.+|...+.++++... -=..+|+.|...+-..|++
T Consensus 158 ~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 158 AALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchH
Confidence 4677899999999999999885 5666544433 3344567999999999999988752 2456899999999999999
Q ss_pred HHHHHHHhcCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 82 FEACKLFDEIPQRD---TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 82 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
..|+.-|++...-| ..+|-.|...|...+.+++|+..|.+... ..|+ ...+..+...|-..|.++.|...++
T Consensus 235 ~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 99999999987633 56899999999999999999999999865 5565 5678888888899999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
+.++.. |.-+..|+.|.+++-..|++.+|.+.|.+... .-..+.+.|...|...|..++|..+|....+ +.|.-
T Consensus 311 ral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~ 387 (966)
T KOG4626|consen 311 RALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEF 387 (966)
T ss_pred HHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhh
Confidence 999875 55678999999999999999999999998763 3456889999999999999999999999887 55654
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHH
Q 010642 235 -QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLG 310 (505)
Q Consensus 235 -~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 310 (505)
..++.|...|-+.|++++|+..|++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|.+
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence 578899999999999999999999997 56787 568999999999999999999999888 77886 458889999
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
.+...|+..+|++.++..+++.|+.+..|..++...---.+|.+
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999998887765555554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-16 Score=175.93 Aligned_cols=350 Identities=11% Similarity=0.035 Sum_probs=281.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
+.+.|++++|+..|+++++... .+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++|
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHH
Confidence 4578999999999999998743 356677888899999999999999999999875 445667777887775 4678999
Q ss_pred HHHHhcCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHH
Q 010642 85 CKLFDEIPQRD------------TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 85 ~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~ 151 (505)
...++.++... ...+..+...+...|++++|++.|++..+ ..| +...+..+...+.+.|++++
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~----~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA----LDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99998876421 23456677889999999999999999977 445 45677788889999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----hh---------HHHHHHHHHHhCCChHHH
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD----VV---------SWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~----~~---------~~~~li~~~~~~g~~~~A 218 (505)
|...++++.+.. +.++..+..+...+.+.|+.++|...++.+.... .. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999998764 5566667677777889999999999999886421 11 123456678899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-C
Q 010642 219 IESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-G 297 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 297 (505)
..+++. .+++...+..+...+.+.|+.++|+..|++..+. -+.+...+..++..|...|++++|++.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999882 2345566777888999999999999999999873 3445778899999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc------hHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCC
Q 010642 298 VKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG------DYVLLLNLYSSVGDWEKVKELREFMN-EKGLQT 369 (505)
Q Consensus 298 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~ 369 (505)
..|+ ...+..+..++...|++++|.++++++.+..|+++. .+..+...+...|++++|.+.+++.. ..|+.|
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5554 556777888889999999999999999987754432 55567899999999999999999875 345544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-16 Score=164.93 Aligned_cols=355 Identities=8% Similarity=-0.015 Sum_probs=255.7
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.....|+.++|+.++.+..... +.+...+..+..++...|++++|.++++.+++.. +.+...+..+...+...|+.++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456788888888888887632 3344567777788888888888888888887764 4456667777788888888888
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChH---------
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALE--------- 150 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~--------- 150 (505)
|...+++..+ | +.. |..+...+...|+.++|+..++++.. ..|+. ..+..+..++...+..+
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----RAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 8888887754 2 455 77788888888888888888888866 34443 33334444444334433
Q ss_pred -------------------------------------HHHHHHHHHHHc-CCCCchh-HH----HHHHHHHHhcCCHHHH
Q 010642 151 -------------------------------------FGEKIHRYISEH-GYGSKMN-LC----NSLIAMYSKCGSLGMA 187 (505)
Q Consensus 151 -------------------------------------~a~~i~~~~~~~-~~~~~~~-~~----~~l~~~y~~~g~~~~A 187 (505)
+|.+.++.+.+. ...|+.. .+ ...+.++...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444433 1122211 11 1112344677999999
Q ss_pred HHHHhcCCCCC---hh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 188 FEVFKGMPEKD---VV-SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 188 ~~~~~~m~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
+..|+.+.+.+ +. .-..+...|...|++++|+..|+++....... .......+..++...|++++|.++++.+
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999987542 11 22225678999999999999999987643211 1244566677889999999999999999
Q ss_pred hhhcC----------CcCC---cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010642 261 SKDFG----------ILPN---IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVI 325 (505)
Q Consensus 261 ~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 325 (505)
..... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|++.+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 86311 0122 123456778889999999999999998 4445 5678888999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+++.+..|++...+..++..+...|++++|..+++++.+.
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-16 Score=159.04 Aligned_cols=361 Identities=11% Similarity=-0.035 Sum_probs=266.3
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIR 108 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 108 (505)
.+......+...|+++.|...|+++++. .|+...|..+...|.+.|++++|+..++...+ .+..+|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3455667788899999999999999875 46788899999999999999999999998765 356789999999999
Q ss_pred CCChhHHHHHHHHchhccCCC---------------------------CC----CHHHHHHHH-----------------
Q 010642 109 NQRTRDALCLFDNLNREESGC---------------------------KP----DDVTCLLVL----------------- 140 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~---------------------------~p----d~~t~~~ll----------------- 140 (505)
.|++++|+..|...... .+. .| .........
T Consensus 207 lg~~~eA~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCII-DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999998766544320 000 00 000000000
Q ss_pred ----------HH------HHhccChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch
Q 010642 141 ----------QA------CAHLGALEFGEKIHRYISEHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DV 199 (505)
Q Consensus 141 ----------~~------~~~~~~~~~a~~i~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~ 199 (505)
.. ....+.+++|.+.++.+.+.+ .+.....++.+...|...|++++|...|++..+ | +.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00 011246788889999888765 233556788889999999999999999998763 3 35
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
..|..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...|++..+. .+.+...+..+...
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 5788888999999999999999999987532 24578888888999999999999999999863 33356677788889
Q ss_pred HHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH-------HHHHHHhCC
Q 010642 280 LGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL-------LLNLYSSVG 350 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g 350 (505)
+.+.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++..+..|.+...+.. ....+...|
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 4455 46788889999999999999999999999998765443321 122344579
Q ss_pred CHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 351 DWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 351 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
++++|.+++++..+.. |+....+.. . .......+..++|...+++...
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~---l----a~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVAT---M----AQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHH---H----HHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999877653 322211110 0 1112345677777777766544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-14 Score=150.39 Aligned_cols=352 Identities=11% Similarity=0.038 Sum_probs=272.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNP--FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...+++.+... +........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 468999999999999999864 443 233 77788888899999999999987211 223333444466888899999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|+++|+++.+ .+...+..++..|...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999875 2567778888999999999999999999966 5677666644444444456666699999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------------
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------------------------------------------- 196 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------------------------------------------- 196 (505)
.+.. |.+...+..++.+..+.|-...|.++..+-+.
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9985 66788888888888888887777766654331
Q ss_pred --------CCh---hHHH----HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 197 --------KDV---VSWS----AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 197 --------~~~---~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
+++ ..|. =.+-++...|++.++++.|+.+...|.+....+-..+.++|...+.+++|..+++++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 001 0111 1244677889999999999999988866455678889999999999999999999997
Q ss_pred hhcC----CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-------------CCC---HHHHHHHHHHHHhcCchhH
Q 010642 262 KDFG----ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-------------KPD---STIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 262 ~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------------~p~---~~~~~~ll~~~~~~g~~~~ 320 (505)
...+ .+++......|.-+|...+++++|..+++++ .. .|| ......++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6422 1223444578889999999999999999988 11 122 2234445677889999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++.++++....|.|......+...+...|...+|++.++.....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-14 Score=153.12 Aligned_cols=343 Identities=9% Similarity=-0.018 Sum_probs=261.4
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC--
Q 010642 15 FYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP-- 92 (505)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 92 (505)
+..+++ ... -+.++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|..+|++..
T Consensus 2 ~~~~~~-~~~-~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALK-SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhc-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 222 23355555666777788999999999999987643 4566678999999999999999999999954
Q ss_pred -CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHH
Q 010642 93 -QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC 171 (505)
Q Consensus 93 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 171 (505)
..+...+..++..+...|++++|+..+++... . .+.+.. +..+..++...|+.++|...++++.+.. |.+..++
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~--~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~ 153 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS--G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYP 153 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34677888999999999999999999999977 2 333455 8888888999999999999999999975 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------------------------CChhH-
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPE-------------------------------------------------KDVVS- 201 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~-------------------------------------------------~~~~~- 201 (505)
..+..++.+.|..++|.+.++.... .++..
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~ 233 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT 233 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 7788888888887766666553322 01100
Q ss_pred --HH----HHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC--Ccch
Q 010642 202 --WS----AMISGLAMNGHGRDAIESFGAMQRAGVF-PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP--NIHH 272 (505)
Q Consensus 202 --~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 272 (505)
+. ..+.++...|++++|+..|+++.+.+.. |+.. ...+..++...|++++|..+|+++.......+ ....
T Consensus 234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 00 1123456778999999999999887532 4432 22256789999999999999999876311111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCC-------------C---HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKP-------------D---STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
...+..++.+.|++++|.++++++ ...| + ...+..+...+...|+.++|+..++++....|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 566677889999999999999988 3223 3 2244566778889999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+..+..++..+...|++++|++.+++..+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999887754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-13 Score=142.55 Aligned_cols=358 Identities=11% Similarity=0.041 Sum_probs=261.4
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
+..+...|+.++|+..+++..... .........+...+...|+++.|.++++++++.. +.++.++..++..|...++.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCH
Confidence 345667899999999999998221 1122333333557788899999999999999887 44677888888999999999
Q ss_pred HHHHHHHhcCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHH---
Q 010642 82 FEACKLFDEIPQR--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKI--- 155 (505)
Q Consensus 82 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i--- 155 (505)
++|++.++++... +...+-.++..+...++..+|++.++++.. ..|+ ...+..+..++.+.|-...|.++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~----~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR----LAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 9999999999874 433443333344446666669999999977 3343 44444554454444433322222
Q ss_pred ---------------------------------------------HHHHHHc-C-CCCchhH-HH---HHHHHHHhcCCH
Q 010642 156 ---------------------------------------------HRYISEH-G-YGSKMNL-CN---SLIAMYSKCGSL 184 (505)
Q Consensus 156 ---------------------------------------------~~~~~~~-~-~~~~~~~-~~---~l~~~y~~~g~~ 184 (505)
++.+... + .|+.... .. -.+-++.+.|++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 2222221 1 1222111 22 234467788999
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 185 GMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAG-----VFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 185 ~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.++++.|+.+..+. ..+-.+..++|...+++++|+.+|+++.... ..++......|..++...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998432 3355678899999999999999999997643 12233445788999999999999999
Q ss_pred HHHHHhhhcCC----------cCCc---chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 256 FLDRMSKDFGI----------LPNI---HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 256 ~~~~~~~~~~~----------~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
+++.+.+.... .|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|++..
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99999873110 1222 12345677788999999999999999 4444 67788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++.++.+....|.+..+...++..+...|+|.+|..+.+.+.+.
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-13 Score=144.57 Aligned_cols=350 Identities=10% Similarity=0.026 Sum_probs=242.8
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMK-FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
..|.+.|++++|+..+.++.+.++. +..-...+..++.. .++ +.+..++.. .+..+..++..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence 4577889999999999999988644 34446666667776 466 666666442 3346888999999999999999
Q ss_pred HHHHHHHhcCCC-----CChhHH---------------------------------------------------------
Q 010642 82 FEACKLFDEIPQ-----RDTVAW--------------------------------------------------------- 99 (505)
Q Consensus 82 ~~A~~~~~~~~~-----~~~~~~--------------------------------------------------------- 99 (505)
++|.+++++++. |...+|
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 999999988751 000000
Q ss_pred ------------------------------------HHHHHHHHHCCChhHHHHHHHHchhccCCCCC------------
Q 010642 100 ------------------------------------NVLISCYIRNQRTRDALCLFDNLNREESGCKP------------ 131 (505)
Q Consensus 100 ------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p------------ 131 (505)
--+.-...+.|+.++|.++|+..........+
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 00001123455666666666655431000011
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 132 ----------------------------------------------------DDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 132 ----------------------------------------------------d~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+...+..+..++.. ++.++|...+.+.
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 11222222222222 4445566655555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QT 236 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 236 (505)
.... |+......+..++...|++++|...|+++.. ++...+..+..++.+.|+.++|...|++..+.. |+. ..
T Consensus 503 l~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 503 EQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred HHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 5442 3433333445555678888888888886653 344556667778888899999999998888753 433 33
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~ 314 (505)
+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++..
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~ 655 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD 655 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344445566999999999999885 3567788889999999999999999999988 66665 5577777788999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|+.++|+..++++.+..|.++..+..+..+|...|++++|...+++..+..
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=145.58 Aligned_cols=349 Identities=13% Similarity=0.057 Sum_probs=266.1
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhCCC---HH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD-G-YQLDSQLMTTLMDLYSTFEK---SF 82 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~ 82 (505)
.+...+|...+..|.+.. +-+......+--...+.|+.++|.++++..... + -..+....+-|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355666777777777652 114444444444556789999999999888652 1 12345566688888888866 33
Q ss_pred HHHHHHh-------------------------cCCC---C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC
Q 010642 83 EACKLFD-------------------------EIPQ---R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD 132 (505)
Q Consensus 83 ~A~~~~~-------------------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 132 (505)
++..+-. .... + +...|..+..++.. +++.+|+..|.+... ..|+
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~----~~Pd 508 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ----RQPD 508 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH----hCCc
Confidence 3333311 1111 2 56778888888887 899999998888766 4477
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH---HHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSA---MISGL 209 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~---li~~~ 209 (505)
......+..++...|++++|...++++... +|+...+..+..++.+.|+.++|...|++..+.++..++. +....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 655555556667899999999999997664 4555556778889999999999999999877544333333 33344
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
...|++++|...|++..+ ..|+...+..+..++.+.|+.++|...+++.... .+.+...++.+...+...|++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456999999999999987 4567888999999999999999999999999863 333566788888899999999999
Q ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 290 YQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 290 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
.+.+++. ...| +...+..+..++...|++++|+..++++.+..|.+..+.........+..+++.|.+.+++--..+.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999988 5556 4678899999999999999999999999999999988888899999999999999998887766554
Q ss_pred C
Q 010642 368 Q 368 (505)
Q Consensus 368 ~ 368 (505)
.
T Consensus 743 ~ 743 (987)
T PRK09782 743 D 743 (987)
T ss_pred c
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-15 Score=139.69 Aligned_cols=256 Identities=13% Similarity=0.096 Sum_probs=107.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHH-HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL-LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
.+...+.+.|++++|++++++... ...+|+...|- .+...+...++.+.|.+.++++.+.+ +.++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~--~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ--KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-ccccccccccccc-c
Confidence 345667778888888888855433 22244444443 34445566778888888888888765 3356667777777 6
Q ss_pred hcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
..+++++|.+++...- .++...+..++..+.+.++++++.+++++..... ..++...|..+...+.+.|+.++|...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887663 3456677788888889999999999998877543 345666777788888899999999999
Q ss_pred HHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 257 LDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 257 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
+++..+. .| +....+.++..+...|+.+++.++++.. ....|...|..+..++...|+.++|...+++..+..|
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999863 34 4667888888899999999888877776 2234556788889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 334 QESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 334 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.++.....+..++...|+.++|.+++.+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=126.13 Aligned_cols=279 Identities=12% Similarity=-0.029 Sum_probs=212.6
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCCHHHHHHHHhcCCC--CChhHHH--HHHHHHHHCCChhHHHH
Q 010642 43 FCSLMGGLQIHARVLRDGYQLDSQLMTTL-MDLYSTFEKSFEACKLFDEIPQ--RDTVAWN--VLISCYIRNQRTRDALC 117 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~ 117 (505)
.|+++.|.+......+.. +++.++..+ .....+.|+.+.|...|.++.+ |+....- .....+...|++++|+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 589999987777654432 233444333 3334788999999999988865 3332222 33667888999999999
Q ss_pred HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHH
Q 010642 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-------NLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
.++++.+ . -+-+...+..+...+.+.|+++++.+++..+.+.+..++. .+|..++....+..+.+...++
T Consensus 175 ~l~~~~~--~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 175 GVDKLLE--V-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHh--c-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999876 2 2335677788888999999999999999999987644322 2344555555666677888888
Q ss_pred HhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 191 FKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 191 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
++.+++ .++.....+..++...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+. .+
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 888763 47778889999999999999999999998873 445422 2344445669999999999999874 34
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
-|...+.++...+.+.+++++|.+.|+.. ...|+..++..+...+...|+.++|.+.+++...+-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45667889999999999999999999998 778999999999999999999999999999987653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=136.64 Aligned_cols=253 Identities=17% Similarity=0.129 Sum_probs=75.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPT-NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
.+.+.|++++|+++++.......+| |..-|..+...+...++.+.|.+.++.++..+. .++..+..++.. ...++.+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccc
Confidence 3455666666666665444332122 223333333344455666666666666665542 244455555555 4566666
Q ss_pred HHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 83 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
+|.+++...-+ ++...+..++..+.+.++++++..+++.+... ...+++...|..+...+.+.|+.++|...+++++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554422 34455556666666666666666666665431 2234455555566666666666666666666666
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
+.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..... +.|..+.
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 653 4445566666666666666666555544332 3345556666666666666666666666655531 1244555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..+..++...|+.++|.++..+..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT----------------
T ss_pred cccccccccccccccccccccccc
Confidence 556666666666666666655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-12 Score=116.65 Aligned_cols=342 Identities=11% Similarity=0.133 Sum_probs=224.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------------CChhHHHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ------------LDSQLMTTL 71 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l 71 (505)
.|.+.|++++|+..|+...+. .|+..+-..++-++...|+.+...+.|.+++..... |+....+.-
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 366788888888888887775 466655444444555567888888888887754322 222222222
Q ss_pred HH-----HHHhCC--CHHHHH----HHHhcCCCCChhH---HH----------H--------HHHHHHHCCChhHHHHHH
Q 010642 72 MD-----LYSTFE--KSFEAC----KLFDEIPQRDTVA---WN----------V--------LISCYIRNQRTRDALCLF 119 (505)
Q Consensus 72 i~-----~~~~~g--~~~~A~----~~~~~~~~~~~~~---~~----------~--------li~~~~~~g~~~~A~~~~ 119 (505)
|. -.-+.+ +.++++ ++..-...||-.. |. . -...|.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 21 111111 112222 1222222222110 10 0 123478899999999998
Q ss_pred HHchhccCCCCCCHHHHHHHHH----------------------------------HHHhccChHHHHHHHHHHHHcCCC
Q 010642 120 DNLNREESGCKPDDVTCLLVLQ----------------------------------ACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 120 ~~m~~~~~~~~pd~~t~~~ll~----------------------------------~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
.-..++......-..+-..++. .....|++++|.+.+.+++...-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8776521111100000001111 111236777888888777765433
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
.....|| +.-.+-+.|++++|+..|-++. ..++...-.+.+.|-...++.+|++++.+.... ++.|...+..|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3333333 3445677888888888887653 456667777888888888899999988776653 4445677888888
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHH-HhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGAC-RIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~ 320 (505)
.|-+.|+-.+|++.+-.--+ -++.+..+...|..-|....-+++|..+|++. -++|+..-|..++..| ++.|+++.
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999887655443 34557888888888888999999999999998 6789999999988655 57899999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
|..+++......|.+......|++.+...|.
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999888874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=123.11 Aligned_cols=319 Identities=13% Similarity=0.108 Sum_probs=246.5
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc---CCCCChhHHHHHHHHHHHCCChhHHH
Q 010642 40 CMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE---IPQRDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
....|++++|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|..-|-.+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999999887 55778899999999999999998887643 34457788999999999999999999
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHh
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLC----NSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~----~~l~~~y~~~g~~~~A~~~~~ 192 (505)
-.|.+..+ --+++...+---...|-+.|+...|..-|.++.+...+.|..-+ ...+..|...++-+.|.+.++
T Consensus 228 ~cy~rAI~---~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQ---ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHh---cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999877 23445455555667788999999999999999887533332222 334666777888888888888
Q ss_pred cCCC--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH----------------------H----HHHH
Q 010642 193 GMPE--K---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT----------------------F----TGVL 241 (505)
Q Consensus 193 ~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------------~----~~ll 241 (505)
.... . +...++.++..|.+..+++.|......+......+|..- | ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7653 2 445688889999999999999998888876222222111 1 1233
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcC--CcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcC
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILP--NIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHK 316 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g 316 (505)
-++.+....+....+....... ...| +...|.-+.++|.+.|++.+|+++|..+ ...-+...|..+..++...|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3445555555555555555553 4333 5678899999999999999999999999 22235779999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+++|.+.++.++...|++..+-..|...|-+.|+.++|.++++.|.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999998876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-11 Score=113.24 Aligned_cols=384 Identities=13% Similarity=0.123 Sum_probs=283.7
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.++...|..+|++.+..... +...|..-+..=.+...+..|+.+++.++..-+..| ..|-..+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 45667888999998876532 555666666666778888999999998887643333 4556666666678999999999
Q ss_pred HhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc-CC
Q 010642 88 FDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH-GY 164 (505)
Q Consensus 88 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~ 164 (505)
|++-. +|+..+|++.|..-.+-...+.|..+|++..- +.|+..+|.--...=.+.|+...+.+++..+++. |-
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 98765 48999999999999999999999999998865 7789888888877777888888888888887764 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CC----------------------------------------C--
Q 010642 165 -GSKMNLCNSLIAMYSKCGSLGMAFEVFKGM----PE----------------------------------------K-- 197 (505)
Q Consensus 165 -~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m----~~----------------------------------------~-- 197 (505)
..+...+.+....=.++..++.|.-+|+-. ++ .
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 112334555555555666677766666422 21 1
Q ss_pred -ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCCHHHHHHHHHHHhhhcCC
Q 010642 198 -DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-------QTFTGVLSAC---SHCGLVDEGMMFLDRMSKDFGI 266 (505)
Q Consensus 198 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~ 266 (505)
|-.+|--.+..-...|+.+...++|++.... ++|-. ..|..+-.+| ....+++.+.++|+...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 3345666666667789999999999998875 55532 2233332232 347889999999999986 56
Q ss_pred cCCcchHHHHHHHHH----hcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 267 LPNIHHYGCVVDLLG----RAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 267 ~p~~~~~~~li~~~~----~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
+....|+.-+--+|+ ++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++.+|.+-.+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 666777776655554 688999999999887 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
....-...|+++.|..+|+-..++.....|..-| ++ ++.-....+..+.+-.+.+.+++
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw---ka----YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW---KA----YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HH----hhhhhhhcchHHHHHHHHHHHHH
Confidence 8888899999999999999988876544444333 22 12222344555666665555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=113.11 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=209.1
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGG-LQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
..|.+.++.-+|+.|.+.|+..+...--.+++.. -...++.-+ ++-|-.|.+.| .....+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 3566667777777777776665555444444322 222222211 12222233222 1111222 2343333
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
++-+...++..++.+||.+.++-...+.|.+++++-.. ...+.+..+|+.++.+-.- ...+++..+|....
T Consensus 198 ---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~--~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 ---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA--AKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK 268 (625)
T ss_pred ---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH--hhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh
Confidence 33333444667888888888888888888888888877 6777788888888776443 33377788888888
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHh----cCC----CCChhHHHHHHHHHHhCCChHH-HHHHHHHHHHC----CC
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFK----GMP----EKDVVSWSAMISGLAMNGHGRD-AIESFGAMQRA----GV 230 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~ 230 (505)
+.||..|+|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+.+.++..+ |..++.++... .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 88888888888888888888776655443 343 5777888888888887777643 44455555432 22
Q ss_pred C---C-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCC---cchHHHHHHHHHhcCChHHHHHHHHHC---C
Q 010642 231 F---P-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPN---IHHYGCVVDLLGRAGLLDQAYQLITSM---G 297 (505)
Q Consensus 231 ~---p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 297 (505)
+ | |..-|...+..|.+..+.+-|.++..-+.... -+.|+ ..-|..+..+.+....++.-..+++.| -
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 2 23456677777878888888877766554321 12222 123556667777777777777777777 3
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc---------------------CCC---------------------
Q 010642 298 VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK---------------------AQE--------------------- 335 (505)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~--------------------- 335 (505)
.-|+..+...++++....+.++..-+++..++..+ |..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666655555554444443332211 111
Q ss_pred -------------CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 -------------SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 -------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+......+..+.+.|+.++|.+++..+.+.+
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1234556667889999999999999996554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-13 Score=127.49 Aligned_cols=280 Identities=10% Similarity=0.002 Sum_probs=214.8
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 010642 45 SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ------RDTVAWNVLISCYIRNQRTRDALCL 118 (505)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 118 (505)
+..+|...|+.+... ......+...+..+|...+++++|+++|+.+.. .+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456788888885443 334457778888899999999999999988764 367788877754433 222333
Q ss_pred HHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 010642 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD 198 (505)
Q Consensus 119 ~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 198 (505)
+.+-.- .--+-.+.||..+.+.|.-+++.+.|.+.|+++++.+ +....+|+.+..-+.....+|.|...|+.....|
T Consensus 409 Laq~Li--~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLI--DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHH--hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 322221 1233456899999999999999999999999998875 4478899999999999999999999999888777
Q ss_pred hhHHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH
Q 010642 199 VVSWSA---MISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG 274 (505)
Q Consensus 199 ~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 274 (505)
+..||+ +...|.+.++++.|.-.|++..+ +.| +.+....+...+.+.|+.|+|++++++...- .+.|+-.--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHH
Confidence 765555 56789999999999999999987 444 4466667777888999999999999999752 223444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
-.+..+...+++++|+..++++ .+.|+ ..++..+...|.+.|+.+.|..-|..+..++|...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5566788899999999999999 66676 45677777999999999999999999999998754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-12 Score=126.21 Aligned_cols=359 Identities=13% Similarity=0.081 Sum_probs=229.7
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC---
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE--- 79 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 79 (505)
++|-..|++++|...|.+..+....-....+..+...+...|+++.+...|+.+.+.. +.+..+.-.|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhh
Confidence 3566788888888888777765322223345566778888888888888888888764 556667777777777664
Q ss_pred -CHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhc--cCCCCCCHHHHHHHHHHHHhccChHHHH
Q 010642 80 -KSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNRE--ESGCKPDDVTCLLVLQACAHLGALEFGE 153 (505)
Q Consensus 80 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 153 (505)
..+.|..++....++ |..+|-.+...|-...-+.. +.+|...... ..+-++.+...+.+.......|+++.|.
T Consensus 394 ~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 345555555544432 34444444444333322222 3333222100 0122233444455554455555555555
Q ss_pred HHHHH--------------------------------------------HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 154 KIHRY--------------------------------------------ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 154 ~i~~~--------------------------------------------~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
..|.. +.+.- |.-+..|--|+.+....+...+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 54444 44431 1112222222222222345556666
Q ss_pred HHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHH
Q 010642 190 VFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACSH------------CGLVDEG 253 (505)
Q Consensus 190 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~~~a 253 (505)
.++... +.|+..|+.+...|.....+..|.+-|...... ...+|..+..+|...|.+ .+..++|
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 665543 346677777777788777777777766666543 233677777677665532 3456788
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
+++|.++.+ ..+.|...-|.+.-.++..|++.+|..+|.+. ...-...+|-.+.+.|...|++..|++.|+...+.
T Consensus 632 lq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988886 44567788888999999999999999999988 22234568889999999999999999999997765
Q ss_pred c--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 332 K--AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 332 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
. .+++.....|..++.+.|++.+|.+.........
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4 4556788899999999999999999887766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-11 Score=118.24 Aligned_cols=276 Identities=11% Similarity=0.017 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH--HHHHHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQ--RD-TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV--TCLLVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~--t~~~ll~~~~~~~~~~~a 152 (505)
.|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+.+.+..+ ..|+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4555555555554433 11 22223333445555555555555555533 223321 222234444555555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHH----HHHHHHHhCCChHHHHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWS----AMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m 225 (505)
...++.+.+.. |.++.+...+..+|.+.|++++|.+.+....+. +...+. ....++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 55555555553 444455555555555555655555555554422 111111 0111112222222223333333
Q ss_pred HHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHHHHHH--HhcCChHHHHHHHHHC-CC
Q 010642 226 QRAGV---FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCVVDLL--GRAGLLDQAYQLITSM-GV 298 (505)
Q Consensus 226 ~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~~-~~ 298 (505)
..... +.+...+..+...+...|+.++|.+++++..+. .|+... ...++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 32211 114445555555556666666666666655542 122211 00011211 2234555555555544 22
Q ss_pred CCC-H--HHHHHHHHHHHhcCchhHHHHHHHH--HHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 299 KPD-S--TIWRTLLGACRIHKHVTLGERVIEH--LIELKAQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 299 ~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
.|+ . ....++...+.+.|++++|.+.|+. ..+..|+ +..+..+...+.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 332 2 3344555556666666666666663 3333333 234556666666666666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-11 Score=116.70 Aligned_cols=275 Identities=9% Similarity=0.032 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhcCCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHH--HHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQR--D-TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCL--LVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~--~ll~~~~~~~~~~~a 152 (505)
.|+++.|++.+...++. + ...|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 79999999999887653 2 33343334555899999999999999965 566764433 335678899999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh---h--------HHHHHHHHHHhCCChHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV---V--------SWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~---~--------~~~~li~~~~~~g~~~~A~~~ 221 (505)
.+.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986 67889999999999999999999999998874321 1 333444444445556666667
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP 300 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 300 (505)
++..... .+.+......+..++...|+.++|..++++..+. +|+... .++.+....++.+++.+.+++. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7766432 3446778888999999999999999999998763 344422 2233344569999999999888 5556
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 301 D-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 301 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+ ...+..+...|...+++++|...|+.+.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 5567788899999999999999999999998775 6788999999999999999999987644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-10 Score=111.03 Aligned_cols=361 Identities=9% Similarity=0.010 Sum_probs=279.0
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
|.+.+.++-|..+|...++.- +-+...|..+...--.-|..+.-..++++++..- +.....|-....-+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHH
Confidence 445566666777777766642 2244556655555555577777777777777653 34555666666667777888888
Q ss_pred HHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 85 CKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
+.++...-+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..---+++.++|.+++++.++
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~----~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS----ISGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 888776643 3667888888888889999999999988854 667777777666666667888999999988888
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 238 (505)
. ++.-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+...=-+.|+.-.|..+++..+..+.+ +...|.
T Consensus 680 ~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl 757 (913)
T KOG0495|consen 680 S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL 757 (913)
T ss_pred h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH
Confidence 6 466677888888899999999999998887653 3 4456887777777888999999999998876544 667888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 318 (505)
..|..-.+.|+.+.|..+..+..+ ..+.+...|..-|-+..+.++-....+.+++-. -|+.+.-++...+-...++
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHH
Confidence 889999999999999999988887 556677788888888888888888888887763 3556666677788888999
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEEC
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLK 379 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 379 (505)
+.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++.+.... .|..|..|.-+.
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999999999999999999999888764 355566665443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-11 Score=110.33 Aligned_cols=224 Identities=13% Similarity=0.165 Sum_probs=102.7
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
|.|.++-...+.|.+++++......+.+..+||.++.+-.-. .+..++.+|+.....||..++|+++...++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 445555555555555555555554455555555555443322 1244555555555555555555555555555555
Q ss_pred HHHHHHH----hcCC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHchhcc--CCCC----CCHHHHHHHHHHHHhc
Q 010642 82 FEACKLF----DEIP----QRDTVAWNVLISCYIRNQRTRD-ALCLFDNLNREE--SGCK----PDDVTCLLVLQACAHL 146 (505)
Q Consensus 82 ~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~----pd~~t~~~ll~~~~~~ 146 (505)
+.|.+.+ .+|. +|...+|..+|..+.+.++..+ |.....++...- ..++ -|..-|.+.+..|.+.
T Consensus 290 ~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l 369 (625)
T KOG4422|consen 290 EDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSL 369 (625)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHh
Confidence 4443332 2222 2455555555555555555433 222222222110 1111 1233444555555555
Q ss_pred cChHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCh
Q 010642 147 GALEFGEKIHRYISEHG----YGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMPE----KDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~----~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~ 215 (505)
.+.+.|.+++....... ++|+ ...|..+..+.++....+.-...|+.|.. |+..+...++.+....|++
T Consensus 370 ~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 370 RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRL 449 (625)
T ss_pred hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence 55555555554433210 1121 12234444445555555555555555442 3334444444444455555
Q ss_pred HHHHHHHHHHHHCC
Q 010642 216 RDAIESFGAMQRAG 229 (505)
Q Consensus 216 ~~A~~~~~~m~~~g 229 (505)
+-.-+++.+++..|
T Consensus 450 e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 450 EVIPRIWKDSKEYG 463 (625)
T ss_pred hhHHHHHHHHHHhh
Confidence 55555555544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=123.97 Aligned_cols=277 Identities=16% Similarity=0.082 Sum_probs=216.5
Q ss_pred CHHHHHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH
Q 010642 80 KSFEACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 80 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~ 156 (505)
+..+|...|..+++ + .......+..+|...+++++|.++|+.+++.+.-..-+...|++.+--+-+. .+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46789999998765 2 3345567889999999999999999999773222223567888887665432 222222
Q ss_pred H-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 157 R-YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
. .+.+. -+..+.+|-++.+.|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 23333 26678999999999999999999999999987644 46788888888899999999999998875 333
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHH
Q 010642 233 DD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTL 308 (505)
Q Consensus 233 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 308 (505)
.. ..|-.+...|.+.++++.|+-.|+... .+.| +......+...+-+.|+.++|+++++++ -+.| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 456677888999999999999999997 4556 4556667778899999999999999998 3333 34443344
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...+...+++++|.+.++++++.-|++...|..+...|-+.|+.+.|..-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566778999999999999999999999999999999999999999998887766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=119.86 Aligned_cols=284 Identities=11% Similarity=0.025 Sum_probs=207.8
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHHHHhcCCC--CC--hhHHHHHHHHHHHCCChhHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQ-LMTTLMDLYSTFEKSFEACKLFDEIPQ--RD--TVAWNVLISCYIRNQRTRDA 115 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A 115 (505)
...|+++.|.+.+....+.. |+.. .+-.....+...|+.+.|.+.|.+..+ |+ ....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35689999999998877654 4433 334445667788999999999988643 33 23444457788889999999
Q ss_pred HHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHHhcCCHHHHH
Q 010642 116 LCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-------SLIAMYSKCGSLGMAF 188 (505)
Q Consensus 116 ~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-------~l~~~y~~~g~~~~A~ 188 (505)
+..++.+.+ . -|-+...+..+...+...|+++.+.+.+..+.+.+..+...... .++..-......+...
T Consensus 173 l~~l~~l~~--~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLE--M-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHH--h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999977 2 23356678888899999999999999999999987544332211 1121112233345555
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 189 EVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT--F-TGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 189 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+.++..++ .++..+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 66666653 48888999999999999999999999999885 344432 1 1122233445788899999988887
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH--C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS--M-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.....|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++....
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 533333325667889999999999999999994 3 67899998999999999999999999999997654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-11 Score=112.41 Aligned_cols=348 Identities=13% Similarity=0.071 Sum_probs=239.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTN-PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 82 (505)
|.++|.+++|+..|.+.+.. .|| +.-|.....+|...|+|+...+--...++.+ |+ +..+..-..++-..|+++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHH
Confidence 67899999999999999985 577 6678888888889999998888777766553 33 334444455566666666
Q ss_pred HHHH------HHhcC-------------------------CC--CChhHHHHHHHHHHH---------------------
Q 010642 83 EACK------LFDEI-------------------------PQ--RDTVAWNVLISCYIR--------------------- 108 (505)
Q Consensus 83 ~A~~------~~~~~-------------------------~~--~~~~~~~~li~~~~~--------------------- 108 (505)
+|+. +++.. .+ +.+..-.+.|..|..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 5542 11111 10 111111112222211
Q ss_pred --------CC---ChhHHHHHHHHchhccCCCCC-----CH------HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC
Q 010642 109 --------NQ---RTRDALCLFDNLNREESGCKP-----DD------VTCLLVLQACAHLGALEFGEKIHRYISEHGYGS 166 (505)
Q Consensus 109 --------~g---~~~~A~~~~~~m~~~~~~~~p-----d~------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 166 (505)
.+ .+.+|.+.+.+-... ....+ |. .+.......+.-.|+.-.+.+-++..++.. +.
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~-~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~ 358 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLG-SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PA 358 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhh-hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cc
Confidence 01 122222222221110 00111 11 111111122234577888888888888875 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLS 242 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 242 (505)
++..|--+..+|....+.++-...|+... ..|+.+|..-...+.-.+++++|..=|++.+.. .| +...|..+-.
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCC 436 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHH
Confidence 34447778888999999999999998775 346677887788888888999999999999874 44 3466777777
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC---------HHHHHHHHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD---------STIWRTLLGAC 312 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~ 312 (505)
+..+.+.+++++..|++..+ .++.-+..|+-....+...+++++|.+.|+.. .+.|+ +.+-.+++..-
T Consensus 437 a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 77789999999999999998 55666789999999999999999999999987 44443 22222233222
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
=.+++..|..+++++.+.+|.....|..|...-...|+.++|+++|++-.
T Consensus 515 -wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23899999999999999999999999999999999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-11 Score=105.63 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=104.6
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc----hhHHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK----MNLCNSLIAMY 178 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~l~~~y 178 (505)
..-|...|-++.|..+|..+.. .+ ..-......++..|....+|++|..+-.++.+.+-.+. ...|.-|...+
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~d--e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVD--EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhc--ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 3334444444444444444433 11 11122333444444444444444444444444332221 12334444444
Q ss_pred HhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
....+++.|..++.+..+-| +..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++..
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44555555555555443222 222223334555566666666666666554333233445556666666666666666
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc---CchhHHHHHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS-MGVKPDSTIWRTLLGACRIH---KHVTLGERVIEHLIE 330 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 330 (505)
.+.++.+. .++...-..+.+......-.+.|...+.+ +..+|+...+..|+..-... |...+....++.|..
T Consensus 271 fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 271 FLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 66666543 23444444444444444444555444433 35567777777777654332 223333444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-10 Score=106.59 Aligned_cols=354 Identities=11% Similarity=0.070 Sum_probs=235.3
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE 79 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (505)
.|.+..++.+|+.+|+-.+..-+..+.. .++.+.-.+.+.|.++.|...|+...+. .|+..+--.|+-.+..-|
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG 323 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC
Confidence 3566778889999888777653222222 3444444567889999999999998876 477776666666677789
Q ss_pred CHHHHHHHHhcCCC----------------CChhHHHH-----HHHHHHHC--CChhHHHHHHHHchhccCCCCCCHHH-
Q 010642 80 KSFEACKLFDEIPQ----------------RDTVAWNV-----LISCYIRN--QRTRDALCLFDNLNREESGCKPDDVT- 135 (505)
Q Consensus 80 ~~~~A~~~~~~~~~----------------~~~~~~~~-----li~~~~~~--g~~~~A~~~~~~m~~~~~~~~pd~~t- 135 (505)
+-++..+.|..|.. |+....|. .+.-.-+. .+-++++-.--++.. .-+.||-..
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g 401 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAG 401 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcc
Confidence 99999999988752 22222222 22222222 122333333334433 334444211
Q ss_pred ------------HH--------HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-----------------
Q 010642 136 ------------CL--------LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY----------------- 178 (505)
Q Consensus 136 ------------~~--------~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y----------------- 178 (505)
+. .-...+.+.|+++.|.+++....+..-......-+.|--.+
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00 01234678999999999988776653222222222211111
Q ss_pred -------------------HhcCCHHHHHHHHhcCCCCChhHHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010642 179 -------------------SKCGSLGMAFEVFKGMPEKDVVSWSAMI---SGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236 (505)
Q Consensus 179 -------------------~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 236 (505)
...|++++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++..- +.-+...
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 2467788888888877766665444333 3466788999999998876542 2235566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+..+...|....+..+|++++.+... -++.|+...+-|.+.|-+.|+-..|.+..-.- ..-| +..+..-|..-|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 77778888889999999999988875 56678889999999999999999998876554 3333 56666667777778
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHH-HHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLL-NLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..-++.++..|++..-+.|.. .-|..++ ..+.+.|++..|..+++...++
T Consensus 639 tqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 888899999999987777654 5566554 5557899999999999988654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-10 Score=102.94 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=178.0
Q ss_pred HHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcC
Q 010642 105 CYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY--GSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~l~~~y~~~g 182 (505)
++....+.+++++-...... .|++.+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++-+--.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~--~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS--VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34444455555555555544 44444443333333444455566666666666665521 013344444432222211
Q ss_pred CHHH-HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 183 SLGM-AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 183 ~~~~-A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
++.- |..++ .+.+--+.|.-.+.+-|+-.++.++|...|+...+. .|. ...|+.+..-|....+...|++-++..
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111 22222 111222334444556677788999999999999885 444 456777888899999999999999999
Q ss_pred hhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 261 SKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 261 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
.+ -.+.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.+.+....+..+...
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 33457889999999999999999999999998 6777 67899999999999999999999999999999888899
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|..|...|-+.++.++|.+.|++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-10 Score=111.73 Aligned_cols=355 Identities=14% Similarity=0.061 Sum_probs=260.2
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
|++ |+.++|..++.+.++..+. +...|.+|...|-..|+.+.+...+-.+-... +.|...|-.+.+...+.|+++.|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 344 9999999999999987544 66789999999999999999998876665554 56789999999999999999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HH----HHHHHHHHHhccChHHHHHHH
Q 010642 85 CKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VT----CLLVLQACAHLGALEFGEKIH 156 (505)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t----~~~ll~~~~~~~~~~~a~~i~ 156 (505)
.-.|.+..+. +....-.-+..|-+.|+...|+..|.++.. . .+|.. .- --.++..+...++-+.|.+++
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~--~-~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ--L-DPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh--h-CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999988763 444444556789999999999999999977 2 22322 22 223455666677778888888
Q ss_pred HHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----CCh----------------------hHHH----HH
Q 010642 157 RYISEH-GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----KDV----------------------VSWS----AM 205 (505)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----~~~----------------------~~~~----~l 205 (505)
...... +-..+...++.++..|.+...++.|......+.. +|. .+|+ .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 877762 2244566788999999999999998887755432 111 1111 22
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 206 ISGLAMNGHGRDAIESFGAMQRAGVFP--DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
.-++......+....+........+.| +...|.-+..++.+.|.+.+|..+|..+... ...-+...|-.+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHH
Confidence 334444444444444444455554444 4467888999999999999999999999875 3333467899999999999
Q ss_pred CChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc---------CCCCchHHHHHHHHHhCCCH
Q 010642 284 GLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELK---------AQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 284 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 352 (505)
|.+++|.+.++.. ...|+ ...--+|-..+.+.|+.++|.+.++.+..-+ ++...........|...|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999988 55564 3344556677889999999999998865222 22233455678889999999
Q ss_pred HHHHHHHHHHHhCC
Q 010642 353 EKVKELREFMNEKG 366 (505)
Q Consensus 353 ~~a~~~~~~m~~~~ 366 (505)
++-..+-..|....
T Consensus 543 E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 543 EEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777766543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-09 Score=101.80 Aligned_cols=260 Identities=10% Similarity=0.014 Sum_probs=205.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
.+|+.-...|.+.+.++-|..+|....+ -.+-+...|......--..|..+....++++++..- |.....|-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alq---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQ---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHh---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 4566666777778888888888888766 233344555555555556678888888888888873 455666777778
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 253 (505)
-+-..|++..|..++...-+ .+...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+..---.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 88889999999999887653 3556788888889999999999999999887 456666666655556667899999
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.+++++..+. ++.-...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.|...--+.|+.-.|..++++..-.
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 9999999874 3333567888889999999999999988876 44454 557888888888889999999999999999
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+|.+...|...+.+-.+.|+.+.|..+..+..+
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=109.86 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC--CcCCc------chHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG--ILPNI------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS 302 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 302 (505)
+.....|.+.......|+++.|...|........ ..++. .+--.+...+-..++++.|.+.+..+ ...|.-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 3444445555555555555555555555443200 11111 01112233333444555555555554 223332
Q ss_pred -HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 303 -TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 303 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|--++......++..+|...++.+...+..++..+..+.+.|.+...|.-|.+-|+...++
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 223333322333345555555555555555555555555555555555565555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=99.91 Aligned_cols=280 Identities=14% Similarity=0.019 Sum_probs=189.4
Q ss_pred cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHHCCChhHHHHH
Q 010642 43 FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR----DTVAWNVLISCYIRNQRTRDALCL 118 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 118 (505)
.|++..|++......+.+-. ....|..-..+--..|+.+.|-+.+.+..++ +....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 37777777777666555522 2233333444455667777777777666543 334455566667777777777777
Q ss_pred HHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHH
Q 010642 119 FDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-------NLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 119 ~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-------~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
.+++.. . -+-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~--~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLE--M-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHH--h-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777655 1 2234455666677777777777777777777777654443 24555655555555555555566
Q ss_pred hcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC
Q 010642 192 KGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP 268 (505)
Q Consensus 192 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 268 (505)
+..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+-.+.+.++.+.-++..+.-.+.++..|
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6665 34566677777788888888888888888887776665 2223356677777777777777776555544
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..++.+.|+..+|.+..++...+-
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 56777888888888888888888876 777888888888888888888888888888866443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=104.89 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=195.5
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHHC
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR------DTVAWNVLISCYIRN 109 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~ 109 (505)
+..++-.....+++.+-.+.....|++.+...-+....+.-...|++.|+.+|+.+... |..+|+.++- +++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHh
Confidence 34556666677778877777777887766666666666666778888888888887652 5667776653 333
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
.+.+ +..+..-.- .--+-.+.|+..+.+-|+-.++.++|...|+++++.+ |....+|+.+.+-|....+...|.+
T Consensus 311 ~~sk--Ls~LA~~v~--~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVS--NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH--HHHHHHHHH--HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 3222 112211111 1112234677777888888888888888888888876 5567788888888888888888888
Q ss_pred HHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC
Q 010642 190 VFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG 265 (505)
Q Consensus 190 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (505)
.|+... ..|-..|-.+.++|.-.+.+.-|+-.|++.... +| |...|.+|..+|.+.++.++|++.|..... .
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~ 461 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--L 461 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 888655 356678888888888888888888888888774 44 556788888888888888888888888876 3
Q ss_pred CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-------C-CCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 266 ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-------G-VKPDST-IWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 266 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
-..+...+..|.+.|-+.++.++|...|++- | +.|... .---|..-+.+.+++++|.........-
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3335577888888888888888887776654 2 222221 1122445566777877777766665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=104.76 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=154.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 355677778888888888888888886642 3456777788888888999999998888877532 244567777788
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
+...|++++|...+++.......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999988764222223456777788889999999999999887 4344 456778888889999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888777777888888999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=122.71 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=195.7
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 196 (505)
.++..+.. .|+.|+.+||..++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +
T Consensus 11 nfla~~e~--~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEI--SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHH--hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 34556666 899999999999999999999999999 9999998888999999999999999999887665 7
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCV 276 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 276 (505)
|...+|+.|..+|.++|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NA 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HH
Confidence 888999999999999999865 333322 233456667777777777777766544335555544 35
Q ss_pred HHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH-KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
+....-.|.++.+++++..++..........+++-+... ..+++-....+...+ .+++.+|..++..-...|+.+.|
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhH
Confidence 556677888999999998884332111222234444332 233333333333333 46778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccccccc
Q 010642 356 KELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEITSEL 422 (505)
Q Consensus 356 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~ 422 (505)
..++.+|+++|++.++.++|.++-| .+....+....+.|++.|+.|+..+..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 9999999999999999999987654 122345566778899999999997554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-09 Score=95.35 Aligned_cols=288 Identities=11% Similarity=0.068 Sum_probs=181.2
Q ss_pred CCCHHHHHHHHhcCCCCChhH---HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHH
Q 010642 78 FEKSFEACKLFDEIPQRDTVA---WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a 152 (505)
.++.++|.+.|-+|.+.|..+ .-+|.+.|-+.|..+.|+.+-+.+... .+...+. ...-.+..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466777888887777654443 446777778888888888887777551 2222221 3445566777788888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--------HHHHHHHHHhCCChHHHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS--------WSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+.+|..+.+.+ .--......|+..|-+..++++|+++-+++.+-+... |--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888877754 3334566777888888888888887776654333322 33344444556777888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH
Q 010642 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST 303 (505)
Q Consensus 225 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 303 (505)
..+.+.+ ....-..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 7764322 2222234555677788888888888888775 43334556677778888888888888888776 3344444
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH---HhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY---SSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
.-..+...-....-.+.|...+.+-+...|.- ..+..|+..- +..|++.+-..++..|....++..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 44444444444455566666666666655543 4455555544 234557777777777765544433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-10 Score=109.12 Aligned_cols=232 Identities=17% Similarity=0.167 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHc-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcCCC--------
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEH-----G-YGSKM-NLCNSLIAMYSKCGSLGMAFEVFKGMPE-------- 196 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~-~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------- 196 (505)
-..|+..+...|...|+++.|..++.+.++. | ..|.+ ...+.+..+|...+++++|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3467777899999999999999999988765 2 12222 2345578899999999999999988752
Q ss_pred CC---hhHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC
Q 010642 197 KD---VVSWSAMISGLAMNGHGRDAIESFGAMQR-----AGVF-PDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI 266 (505)
Q Consensus 197 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (505)
.+ ..+++.|..+|.+.|++++|...++...+ .|.. |.. .-++.+...|...+++++|..++....+.+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 12 34688888899999999999888877643 1222 222 24667777899999999999999887765432
Q ss_pred cC--C----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 267 LP--N----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 267 ~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
.| + ..+++.|...|...|++++|.++++++ +..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22 2 356899999999999999999999987 22222 44677888999999999999999988554
Q ss_pred ----hcCCC---CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 331 ----LKAQE---SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 331 ----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+|.. ..+|..|+..|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 3478899999999999999999998875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-10 Score=111.42 Aligned_cols=259 Identities=10% Similarity=0.015 Sum_probs=177.4
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC
Q 010642 16 YLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD 95 (505)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 95 (505)
+++-.+...|+.|+..||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 56778889999999999999999999999999998 9999988888889999999999999999887766 788
Q ss_pred hhHHHHHHHHHHHCCChhH---HHHHHHHchhc--cCCCCCCHHHHHHH--------------HHHHHhccChHHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRD---ALCLFDNLNRE--ESGCKPDDVTCLLV--------------LQACAHLGALEFGEKIH 156 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--~~~~~pd~~t~~~l--------------l~~~~~~~~~~~a~~i~ 156 (505)
..+|+.|..+|...||... ..+.+..+... ..|+.--..-+-.. +......|-++.+.++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999765 22222222110 01211111111111 11112223333333333
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhcCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYSKC-GSLGMAFEVFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
..+...... .+... .+.-.... ..+++-...-.... .++..++.+.+..-...|+.+.|..++.+|++.|+..+.
T Consensus 163 ~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 163 AKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred hhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 222111000 00011 11111111 12333333333333 478999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-|..|+-+ .++...+..++..|... |+.|+..|+.-.+..+...|....+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhc
Confidence 888888765 78888888889989885 9999999999888887776664333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-08 Score=92.62 Aligned_cols=276 Identities=11% Similarity=0.070 Sum_probs=212.6
Q ss_pred CCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHH
Q 010642 78 FEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEK 154 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 154 (505)
.|++..|++...+-.+ .....|..-..+--+.|+.+.|-.++.+..+ ..-.++.....+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 6999999999987654 3455666677788889999999999999866 2224455566677777889999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----------hhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 155 IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD-----------VVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
-..++.+.+ +-++.+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998886 6678899999999999999999999999987642 2367777766655555555555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCC
Q 010642 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVK 299 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 299 (505)
..... .+-+...-.+++.-+.+.|+.++|.++..+..+. +..|+. +..-...+-++...-.+..++- +..
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 65443 4445566677888899999999999999999886 766661 1112234556655555444443 444
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 300 PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+-.+.+|...|.+++.+.+|...|+...+..|. ..+|..+..++.+.|+..+|.+++++-...
T Consensus 328 --p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 --PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 477889999999999999999999988887765 579999999999999999999999887643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-12 Score=83.67 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=46.3
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-09 Score=109.93 Aligned_cols=261 Identities=12% Similarity=0.013 Sum_probs=187.8
Q ss_pred CChhHHHHHHHHHHH-----CCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHH---------hccChHHHHHHHHH
Q 010642 94 RDTVAWNVLISCYIR-----NQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACA---------HLGALEFGEKIHRY 158 (505)
Q Consensus 94 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~---------~~~~~~~a~~i~~~ 158 (505)
.+..+|...+.+-.. .+..++|+.+|++..+ ..|+. ..+..+..++. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 355666666665422 2346789999999976 55653 44555544433 22447899999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 159 ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
+++.+ |.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+..
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCh
Confidence 99986 66788899999999999999999999998753 3 4567888899999999999999999999885 44432
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH-HHHHHHHH
Q 010642 236 -TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST-IWRTLLGA 311 (505)
Q Consensus 236 -t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~ 311 (505)
.+..++..+...|++++|...+++..+. .+| ++..+..+...|...|++++|...++++ ...|+.. .++.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2333444566689999999999998763 234 3445677888899999999999999988 4455544 44555556
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 312 CRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+...| +.|...++.+.+.....+..+..+...|.-.|+-+.+... +++.+.|
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66777 4788878887765432222333366677777887777776 7777665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-09 Score=98.74 Aligned_cols=261 Identities=12% Similarity=0.004 Sum_probs=210.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
++........-+...+++.+.+++++.... ..++....+..-|..+...|+..+-..+=.++++. .|..+.+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle---~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE---KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh---hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 455555566678889999999999999877 35566666666677888888877777776677776 47788999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
.--|.-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..|...-+. ++-....+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 999999999999999999876433 358999999999999999999998887653 1112223344555788899999
Q ss_pred HHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 252 EGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
.|.++|.+.. ++.| |+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..++++.+.+++|
T Consensus 398 LAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999987 5555 5667777777777788999999998876 1111 345688899999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..+++.+.+.|.+..+|.++.-.|...|+++.|...|.+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-09 Score=96.90 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...+..+...+...|++++|...+++... . .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE--H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 45566666777777777777777776655 1 22334555556666666666666666666666553 33444555555
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
..|...|++++|.+.|++.... ....+..+...+...|++++|...|.+...... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 5555555555555555554321 122333344444444444444444444443211 1222333344444444444
Q ss_pred HHHHHHHHHHh
Q 010642 251 DEGMMFLDRMS 261 (505)
Q Consensus 251 ~~a~~~~~~~~ 261 (505)
++|...+++..
T Consensus 186 ~~A~~~~~~~~ 196 (234)
T TIGR02521 186 KDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=81.26 Aligned_cols=50 Identities=32% Similarity=0.569 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~ 145 (505)
||+++||++|.+|++.|++++|+++|++|.+ .|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~--~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK--RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHcC
Confidence 6888999999999999999999999999988 8999999999999988864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=110.65 Aligned_cols=256 Identities=9% Similarity=-0.058 Sum_probs=173.1
Q ss_pred CChhhHHHHHHHHH-----ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hCCCHHHHHHHHhcCCC
Q 010642 28 TNPFACSFAIKCCM-----KFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYS---------TFEKSFEACKLFDEIPQ 93 (505)
Q Consensus 28 p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~ 93 (505)
.+...|...+.+-. ..+++++|.+.++++++.. +.+...+..+...|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34444444444421 2245788899999888775 334556665555443 22457888888887765
Q ss_pred ---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 94 ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 94 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
.+..+|..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|...++++.+.. |.+..
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~ 407 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL----LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAA 407 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChh
Confidence 3677888888888899999999999999877 3344 5667778888889999999999999988875 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPE---K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT-FTGVLSAC 244 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~ 244 (505)
.+..++..+...|++++|...+++..+ | ++..+..+..+|...|+.++|...+.++... .|+..+ .+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455567778899999998887642 3 4455777788888999999999999887653 444443 34444456
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
...| +.|...++.+.+...-.|....+.. ..|.-.|+-+.+..+ +++
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence 6666 4777777777664344444334433 335556666666666 665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-09 Score=100.05 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=139.4
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.+++.+...+++...+.. +++...+..-|.++...|+..+-..+-.++++. .|..+.+|-++.-.|...|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 445555555555555542 233334444444455555544444444444433 233445555555555555555555555
Q ss_pred HhcCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 88 FDEIPQRD---TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 88 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
|.+...-| ...|-.....|+-.|..++|+..+...-+...| ....+--+.--|.+.++++.|.+.|.++....
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~- 410 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA- 410 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence 55443321 234555555555555555555555444331111 11112222333445555555555555555542
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
|.|+.+.+-+.-++...+.+.+|...|+....+ .+..... ...-..+++.|..+|
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KIFWEPTLNNLGHAY 465 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-ccchhHHHHhHHHHH
Confidence 445555555555555555555555555433200 0000000 001234566666677
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI 314 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 314 (505)
.+.+.+++|+..++.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++|+..+-..++..+..
T Consensus 466 Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 777777777777776665 34445666666666677777777777777666 666766666666655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-07 Score=88.17 Aligned_cols=351 Identities=11% Similarity=0.100 Sum_probs=237.6
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
++.....|..++++....=++.|..-|. -+..=-..|++..|+++|+.-.. ..|+...|++.|+.=.+-..++.|..
T Consensus 119 knk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 4556667777777777654444433222 23333455777788888877654 36777788888877777777888888
Q ss_pred HHhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHH----
Q 010642 87 LFDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYI---- 159 (505)
Q Consensus 87 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~---- 159 (505)
++++.. .|++.+|--...--.+.|+...|..+|...... -|- ..+...|++....=.+...++.|.-+|..+
T Consensus 196 IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 196 IYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 877654 467777777666666777777777777666541 110 011122222222222223333333333322
Q ss_pred ----------------------------------------HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--
Q 010642 160 ----------------------------------------SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-- 197 (505)
Q Consensus 160 ----------------------------------------~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-- 197 (505)
++.+ +.|-.+|--.+..-...|+.+...++|++....
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Confidence 2222 445556666777777889999999999987532
Q ss_pred Ch---hHHHHHHH--------HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHhh
Q 010642 198 DV---VSWSAMIS--------GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC----SHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 198 ~~---~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~~~~~~~~ 262 (505)
.. ..|...|- .=....+.+.+.++|+...+. ++-..+||..+--.| .++.++..|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-
Confidence 11 12332221 113467889999999998883 333456776554444 36788999999999887
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--Cch
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGD 338 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 338 (505)
|.-|...++...|..=.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-++.....+ ...
T Consensus 432 --G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 --GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred --ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 88999999999999999999999999999988 5666 57799998888899999999999999988765222 235
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|...|+.-...|.++.|..+++++.+..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 6667777788999999999999998754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=96.90 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHH
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSAMISG 208 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 208 (505)
|-.--+.+.++|.+.|.+.+|++.++..++. .|.+.+|-.|..+|.+..+...|+.+|.+-.+ | |+....-+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3333345666677777777777776666654 34555666667777777777777777766543 2 33333445556
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
+-..++.++|.++|+...+.. ..+.....++...|.-.++++-|..+++++.+. |+ .++..|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhh
Confidence 666677777777777766542 223445555666666677777777777777764 54 345566666666666777777
Q ss_pred HHHHHHHC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 289 AYQLITSM---GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 289 A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
++.-|.+. .-.|+ ..+|..|.......||+..|.+.|+..+..++++...++.|.-.-.+.|+++.|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 77766665 22343 45788888888889999999999999999999999999999999999999999999998876
Q ss_pred hCC
Q 010642 364 EKG 366 (505)
Q Consensus 364 ~~~ 366 (505)
+..
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-07 Score=92.65 Aligned_cols=258 Identities=16% Similarity=0.088 Sum_probs=173.3
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC----
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTF---- 78 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 78 (505)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3467889999999999875543 33234456667788899999999999999999997 44666666666665222
Q ss_pred -CCHHHHHHHHhcCCC--C-------------C--------------------hhHHHHHHHHHHHCCChhHHHHHHHHc
Q 010642 79 -EKSFEACKLFDEIPQ--R-------------D--------------------TVAWNVLISCYIRNQRTRDALCLFDNL 122 (505)
Q Consensus 79 -g~~~~A~~~~~~~~~--~-------------~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~m 122 (505)
.+.+....+++.+.+ | + +..++.|-..|.......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 246677777776532 0 1 123444444444333333344444444
Q ss_pred hhcc--C----------CCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 123 NREE--S----------GCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 123 ~~~~--~----------~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
.... . .-+|.. .++..+...+...|++++|.++.+.++++. |..+..|..-...|-+.|++++|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3210 1 112333 344556677788888999998888888875 445778888888888899999888
Q ss_pred HHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCCHHHHHHHH
Q 010642 189 EVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT--------FTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 189 ~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.++...+- |-..=+-.+..+.+.|+.++|.+++......+..|-... ......+|.+.|++..|.+.|
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888876643 445556667778888999999888888877665443211 134456788888888888888
Q ss_pred HHHhhh
Q 010642 258 DRMSKD 263 (505)
Q Consensus 258 ~~~~~~ 263 (505)
..+.+.
T Consensus 329 ~~v~k~ 334 (517)
T PF12569_consen 329 HAVLKH 334 (517)
T ss_pred HHHHHH
Confidence 877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.1e-09 Score=101.18 Aligned_cols=233 Identities=15% Similarity=0.094 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhc---cCC-CCCCHHHH-HHHHHHHHhccChHHHHHHHHHHHHc-----C--CC
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNRE---ESG-CKPDDVTC-LLVLQACAHLGALEFGEKIHRYISEH-----G--YG 165 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~-----~--~~ 165 (505)
+...+...|...|++++|..+++...+. ..| ..|...+. ..+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455889999999999999999888661 011 23444433 34677888999999999999988763 2 12
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCC
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRA---GVF 231 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 231 (505)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245677788899999999998888776531 222 24667778889999999999999876531 133
Q ss_pred CCH----HHHHHHHHHHhccCCHHHHHHHHHHHhhhc-----CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-----
Q 010642 232 PDD----QTFTGVLSACSHCGLVDEGMMFLDRMSKDF-----GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM----- 296 (505)
Q Consensus 232 p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 296 (505)
++. .+++.+...|.+.|++++|..+|++.+... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 578999999999999999999999988652 1122 2446788888999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 297 ---GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 297 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
+-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 45899999999999999999999998764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-08 Score=90.71 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
+..+.++.-+.++... ....|+ ...|..+...+...|+.++|...|.++++.. |.+..+|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~-~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILAS-RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHcc-ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455566666555531 122222 2445566666777777777777777777764 55677788888888888888888
Q ss_pred HHHHhcCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 188 FEVFKGMPE--K-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 188 ~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 888877643 2 4567777778888888888888888888774 44443222222233456778888888876554
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHH--HHHHHHC-CC----CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQA--YQLITSM-GV----KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|+...+ .++. ...|++.++ .+.+.+. .. .| ....|..+...+...|++++|...|+++.+..|++.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 333333222 2332 334554433 2222221 11 12 234788888889999999999999999999887654
Q ss_pred chHH
Q 010642 337 GDYV 340 (505)
Q Consensus 337 ~~~~ 340 (505)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-07 Score=86.19 Aligned_cols=298 Identities=10% Similarity=-0.005 Sum_probs=197.7
Q ss_pred hHHHHHHHHHcc--CCcHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHH---HHHH
Q 010642 32 ACSFAIKCCMKF--CSLMGGLQIHARVLRD-GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNV---LISC 105 (505)
Q Consensus 32 ~~~~ll~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~ 105 (505)
+...-+.+++.. ++-..+.+.+..+... -++-|+....++.+.|...|+.++|+..|++...-|+.+... ..-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 333334444433 3334444444444332 356677788888888888999999999998766544333222 2334
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG 185 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 185 (505)
+.+.|+++.-..+...+.. ...-....|..-+...-..++++.|..+-++.++.+ +.+...+-.-...+...|+.+
T Consensus 276 L~~eg~~e~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHhccCHhhHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 5667888877777776654 111233334334444456677888888877777764 344555555566777888899
Q ss_pred HHHHHHhcCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHH
Q 010642 186 MAFEVFKGMP--E-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL-SACS-HCGLVDEGMMFLDRM 260 (505)
Q Consensus 186 ~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~ 260 (505)
+|.-.|+... . -+..+|..|+.+|...|++.+|.-+-+...+. +.-+..+...+. ..|. ....-++|.++++.-
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 8888887654 3 36788999999999999998888776665442 223445554442 2222 223346788887776
Q ss_pred hhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 261 SKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 261 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
. .+.|+ ....+.+...+...|+..++..++++. ...||...-+.|...++..+.+++|...|..++..+|.+..
T Consensus 431 L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 431 L---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred h---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 5 44565 335566777888889999999998887 66788888888888888888999999999999888887743
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-08 Score=89.44 Aligned_cols=188 Identities=14% Similarity=-0.004 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHH
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQA 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~ 142 (505)
.|..+...|...|+.++|...|++..+ .+..+|+.+...+...|++++|+..|++..+ +.|+ ..++..+..+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH
Confidence 344455555555555555555554432 2445555555566666666666666555544 2332 3444555555
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
+...|++++|.+.++...+.. |.+. ........+...++.++|...|.+... .+...|.. ...+...|+..++ +.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TL 217 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HH
Confidence 555566666666665555543 1122 111111223334556666666543221 12222221 1222233444333 23
Q ss_pred HHHHHHCC-----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 222 FGAMQRAG-----VFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 222 ~~~m~~~g-----~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+..+.+.. +.| ...+|..+...+.+.|+.++|...|++..+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333210 011 123455666666666666666666666664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-06 Score=79.29 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=115.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH-------GRDAIESFGAMQRAGVFPDDQ-TFTGVLSAC 244 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 244 (505)
.|+--|.+.+++++|..+.+.....++.-|-.-...++..|+ ..-|.+.|+-.-.++..-|.. --.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 355567788888888888888765555444333333334433 334444454443444333332 223444555
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHH-HHHHhcCchhHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLL-GACRIHKHVTLG 321 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll-~~~~~~g~~~~a 321 (505)
.-..++++.+-+++.+.. +-...|...+ .+.++++..|.+.+|+++|-++ +.+ .|..+|-+++ ++|...+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555678888888888876 2333344333 5678888889999999988877 222 3566666555 566777877776
Q ss_pred HHHHHHHHHhc-CCCC-chHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 322 ERVIEHLIELK-AQES-GDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 322 ~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
-. .+++.+ |.+. .....+.+-|.+++.+--|.+.|+.+....
T Consensus 448 W~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 448 WD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 44 445544 2222 233356677888888888888888877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-07 Score=79.01 Aligned_cols=197 Identities=14% Similarity=0.037 Sum_probs=126.1
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...+.-.|.+.|+...|+.-+++++++. |.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3444555666666666666666666664 4455566666666666666666666666543 23445566666666777
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 291 (505)
|++++|...|++.....--|. ..||..+.-+..+.|+.+.|..+|++..+. .+-.......+.+...+.|++..|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777777765422222 246666666677777777777777777652 22334556667777777777777777
Q ss_pred HHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 292 LITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 292 ~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
+++.. ...++..+....|..-...|+.+.+-+.=..+....|.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77766 333666666666777777777777777666666666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=92.81 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=149.5
Q ss_pred HHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-
Q 010642 105 CYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG- 182 (505)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g- 182 (505)
.+...|++++|++.+..-.. ..+|. ..+......+.+.|+.++|..++..+++.+ |.+...|..|..+..-..
T Consensus 13 il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 34556666666666655422 33343 333444555666666666666666666665 444445555555542221
Q ss_pred ----CHHHHHHHHhcCCCCCh--hHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 183 ----SLGMAFEVFKGMPEKDV--VSWSAMISGLAMNGHG-RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 183 ----~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
..+...++|+++.+.-+ .+...+.-.+.....+ ..+...+..+...|+++ +|+.|-.-|....+.+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 34555555555532211 1111111112211122 23444556666777653 44555555555555555555
Q ss_pred HHHHHhhhc-------------CCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCch
Q 010642 256 FLDRMSKDF-------------GILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHV 318 (505)
Q Consensus 256 ~~~~~~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 318 (505)
++....... .-+|+. .++.-+...|...|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 555544321 112333 23355567778888888888888876 66676 44666777778888888
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
.+|...++.+.++++.+...-.-.+..+.+.|++++|.+++....+.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888888888888877766666667777888888888888888876665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-06 Score=81.30 Aligned_cols=321 Identities=9% Similarity=-0.041 Sum_probs=205.0
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHH
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTFEKSFEACKLFDEIPQRD---TVAWNVLISCYIR 108 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~ 108 (505)
+....+-|-+.|.+++|++.+.+++.. .|| +..|......|...|++++..+--....+-+ +.++..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344455677889999999999999876 466 7888888889999999998888776665533 3345555566777
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH-cC--CCCchhHHHHHHH---------
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE-HG--YGSKMNLCNSLIA--------- 176 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~--~~~~~~~~~~l~~--------- 176 (505)
.|++++|+.-..-..-. .++. |..+-..+=+.+- ..|+.-..+-.+ .+ .-|.+....+...
T Consensus 196 lg~~~eal~D~tv~ci~-~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCIL-EGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hccHHHHHHhhhHHHHh-hhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 77777765433222110 1111 1111000000000 111111111111 11 1111111111111
Q ss_pred --------------HH----Hhc-CCHHHHHHHHhcCC-------CCC---------hhHHHHHHHHHHhCCChHHHHHH
Q 010642 177 --------------MY----SKC-GSLGMAFEVFKGMP-------EKD---------VVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 177 --------------~y----~~~-g~~~~A~~~~~~m~-------~~~---------~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
++ .+. ..+..|...+.+-. ..+ ..+...-..-+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 110 02223332222110 111 11222222234557889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP 300 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 300 (505)
|+........++.. |.-+...|....+.++.++.|+...+ -.+-++.+|..-.+++.-.+++++|..-|++. .+.|
T Consensus 349 ~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred HHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 99999865554442 77777889999999999999999975 23335677777778888889999999999998 7777
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 D-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+ ...|-.+-.+..+.+++++++..|++.++.-|..+..|+....++...++++.|.+.|+...+.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 4 4567667677778889999999999999999999999999999999999999999999987653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=88.79 Aligned_cols=229 Identities=10% Similarity=0.061 Sum_probs=194.2
Q ss_pred HHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
+.|..+|.+.|.+.+|...|+.-.. ..|-+.||..+-++|.+..+...|..++.+-++. +|-|+.........+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 6788999999999999999988866 4677788999999999999999999999988876 4667777778889999
Q ss_pred hcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
..++.++|.++|+...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998764 35666777778899999999999999999999987 778888898899999999999999
Q ss_pred HHHHhhhcCCcCC--cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 257 LDRMSKDFGILPN--IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 257 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
|.+.... --.|+ ..+|-.+.......|++.-|.+-|+-. ...| +...++.|...-.+.|+++.|..+++......
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9988764 33343 457888888888999999999999887 3233 56789999988899999999999999998887
Q ss_pred CCC
Q 010642 333 AQE 335 (505)
Q Consensus 333 ~~~ 335 (505)
|+-
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-08 Score=81.26 Aligned_cols=162 Identities=14% Similarity=0.021 Sum_probs=110.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
...+.-+|.+.|+...|..-+++..+. .|+ ..++..+...|.+.|..+.|.+-|+...+. -+-+-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 444556677777777777777777664 333 346666666777777777777777777642 222455666677777
Q ss_pred HhcCChHHHHHHHHHC---CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 281 GRAGLLDQAYQLITSM---GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
|..|++++|...|++. +.-| -..+|..+.-+..+.|+.+.|...+++.++.+|..+.+...+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777776 2222 24467777767777788888888888888877777777777777777888888887
Q ss_pred HHHHHHHhCCC
Q 010642 357 ELREFMNEKGL 367 (505)
Q Consensus 357 ~~~~~m~~~~~ 367 (505)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777665554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-06 Score=80.19 Aligned_cols=348 Identities=14% Similarity=0.115 Sum_probs=213.1
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
+-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ...+.+.+---.....+.+..+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 34567899999999999999876 33556777777788899999999855433211 0111111111122334678899
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC----------------------------CCCHH
Q 010642 83 EACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC----------------------------KPDDV 134 (505)
Q Consensus 83 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------------------~pd~~ 134 (505)
+|...++.....|..+...-...+-+.|++++|+++|+.+.++ +. .| ..
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~ 173 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAALQVQLLQSVPEVP-ED 173 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cc
Confidence 9999988666556556666667788889999999999888552 21 11 12
Q ss_pred HHHHHHH---HHHhccChHHHHHHHHHHHHcC-------CCC------ch-hHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 010642 135 TCLLVLQ---ACAHLGALEFGEKIHRYISEHG-------YGS------KM-NLCNSLIAMYSKCGSLGMAFEVFKGMPEK 197 (505)
Q Consensus 135 t~~~ll~---~~~~~~~~~~a~~i~~~~~~~~-------~~~------~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 197 (505)
+|..+.+ .+...|++.+|++++....+.+ -.. +. .+--.|..++-..|+.++|.++|....+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4444433 2356688999999888873321 000 01 12334666777889999999888765421
Q ss_pred ---C----------hhH----------------------------------------HH-HHHHHHH-------------
Q 010642 198 ---D----------VVS----------------------------------------WS-AMISGLA------------- 210 (505)
Q Consensus 198 ---~----------~~~----------------------------------------~~-~li~~~~------------- 210 (505)
| .++ .| .++..|.
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 0 000 00 0111110
Q ss_pred -------------------hCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------HHh
Q 010642 211 -------------------MNGHGRDAIESFGAMQRAGVFPDD--QTFTGVLSACSHCGLVDEGMMFLD--------RMS 261 (505)
Q Consensus 211 -------------------~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~~~ 261 (505)
+...+..|.+++....+. .|.. ......++.....|+++.|.+++. .+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 001122222222222221 1222 233344455567899999999888 444
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+. +. .+.+...++..|.+.++.+.|..++.+. .-.+. ..+|.-+...-.++|+.++|...++++.+..
T Consensus 412 ~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 412 EA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 32 33 3345566778888888877776666655 11121 2234444444567799999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
|++..+...++.+|++. +.+.|..+-+.+
T Consensus 489 ~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999887 577777765443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-06 Score=81.07 Aligned_cols=352 Identities=12% Similarity=0.071 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 010642 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLF 88 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 88 (505)
|+-++|.+..+.-....++ +.+.|..+.-.+....++++|...+..+++.+ +.|..++.-|--.-++.|+++.....-
T Consensus 55 g~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4444554444444433222 33444444444444445555555555555444 334444444444444444444433333
Q ss_pred hcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH------HHHHhccChHHHHHHHHHH
Q 010642 89 DEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL------QACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 89 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll------~~~~~~~~~~~a~~i~~~~ 159 (505)
....+ .....|..+..++.-.|++..|..+.+...+. ..-.|+...+.... ......|..+.|.+.+...
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 32222 23456777778888889999999999888773 22356665554332 2334566667776666544
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHH-HHHHHHhCCChHHH------------------
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSA-MISGLAMNGHGRDA------------------ 218 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~-li~~~~~~g~~~~A------------------ 218 (505)
... +......-..-.+.+.+.+++++|..++..+..+ |...|.- +..++.+..+.-++
T Consensus 212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p 290 (700)
T KOG1156|consen 212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP 290 (700)
T ss_pred hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence 332 2222334445667788899999999999887754 3333332 22233221112222
Q ss_pred -----------------HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc-C------------CcC
Q 010642 219 -----------------IESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF-G------------ILP 268 (505)
Q Consensus 219 -----------------~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~------------~~p 268 (505)
-+++..+.+.|++|- |..+.+-|-.-...+--.++.-.+.... | -+|
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 223334444444432 2222222222111111111111111100 1 144
Q ss_pred Ccc--hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 269 NIH--HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 269 ~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
+.. ++-.++..|-+.|+++.|+.+++.. +..|+.+ -|..=.+.+...|++++|..++++..+++.+|...-.-=+.
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 443 3456778889999999999999988 7777755 55555577888899999999999999998665332223445
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCC
Q 010642 345 LYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 345 ~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
-..++.+.++|.++.....+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc
Confidence 55688999999999999877664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-06 Score=81.60 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=40.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHhcCC---------CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIELKAQ---------ESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
....++...|+.+.|...++.+...... ..........++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3455566777777777777776553311 12234455667789999999999998876544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=86.36 Aligned_cols=249 Identities=11% Similarity=0.042 Sum_probs=156.2
Q ss_pred HHhCCCHHHHHHHHhc--CCC-CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH
Q 010642 75 YSTFEKSFEACKLFDE--IPQ-RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
+.-.|++..++.-.+. ..+ .+.....-+.++|...|+++.++ .++.. . -.|.......+...+....+-+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--S-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--T-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--C-CChhHHHHHHHHHHHhCccchHH
Confidence 3346777777755441 111 12334555677888888877544 34433 2 25666665555554444344444
Q ss_pred HHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 152 GEKIHRYISEHGYG-SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 152 a~~i~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
+..-+......... .+..+......+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 43333332222222 34444455556778889999999988876 56667777888999999999999999999874
Q ss_pred CCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHH
Q 010642 231 FPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTI 304 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 304 (505)
. +..+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+.-++...|++++|.+++.+. ...| +..+
T Consensus 161 ~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 3 33445555554433 3468899999999876 45567778888888888899999998888876 4444 4556
Q ss_pred HHHHHHHHHhcCch-hHHHHHHHHHHHhcCCCC
Q 010642 305 WRTLLGACRIHKHV-TLGERVIEHLIELKAQES 336 (505)
Q Consensus 305 ~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 336 (505)
+..++......|+. +.+.+.+.++....|..+
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777777 667788888887777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.3e-06 Score=82.30 Aligned_cols=354 Identities=16% Similarity=0.055 Sum_probs=214.4
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh-CCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQL-DSQLMTTLMDLYST-FEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~-~g~~~~ 83 (505)
.+.|+++.+.+.|++....-. -....|..+-..+...|.-..|..+++........| |+.++-..-..|.+ .+.+++
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee 412 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE 412 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence 445666666666666654322 234556666666666666666666666554332222 22222222222322 233333
Q ss_pred HHHHHhcCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--------RDTVAWNVLISCYIRN-----------QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 84 A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
++..-.+... .....|-.+.-+|... ....++++.+++..+. .+-.|+..-|.+ --++
T Consensus 413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-d~~dp~~if~la--lq~A 489 (799)
T KOG4162|consen 413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-DPTDPLVIFYLA--LQYA 489 (799)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHH--HHHH
Confidence 3322222211 2344455555554432 1234677777777652 223343333333 3456
Q ss_pred hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C--------------------hhH
Q 010642 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---D--------------------VVS 201 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~--------------------~~~ 201 (505)
..++++.|.+...+..+.+-..++..|..|.-.+...+++.+|+.+.+..... | ..|
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 67788888888888888866777888888888888888888888887654311 0 111
Q ss_pred HHHHHHHHH-----------------------hCCChHHHHHHHHHHH--------HCC---------CC--CCH-----
Q 010642 202 WSAMISGLA-----------------------MNGHGRDAIESFGAMQ--------RAG---------VF--PDD----- 234 (505)
Q Consensus 202 ~~~li~~~~-----------------------~~g~~~~A~~~~~~m~--------~~g---------~~--p~~----- 234 (505)
...++...- ..++..+|.+..+++. ..| +. |+.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 111111111 0112222222222111 001 01 121
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHH
Q 010642 235 -QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGA 311 (505)
Q Consensus 235 -~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~ 311 (505)
..|......+...+..++|...+.+..+ -.+-....|......+...|+..+|.+.|... .+.|+ +.+..++...
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 1233445566777888888877777764 22334566777777888899999999999887 77776 5588899999
Q ss_pred HHhcCchhHHHH--HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 312 CRIHKHVTLGER--VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 312 ~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|+...|.. ++..+.+.+|.++..|..|...+.+.|+.+.|.+.|....+.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999999998888 999999999999999999999999999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=8e-06 Score=79.06 Aligned_cols=294 Identities=10% Similarity=-0.018 Sum_probs=167.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCC-CCCh-hHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-ChhHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGY-QLDS-QLMTTLMDLYSTFEKSFEACKLFDEIPQ--R-DTVAWNVLISCY 106 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 106 (505)
.|..+...+...++.+.+.+.+....+... .++. .........+...|++++|.+.+++..+ | |...++. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444555555666666665555544332 1121 1122223345667888888888776543 2 3444442 2222
Q ss_pred HH----CCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 107 IR----NQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 107 ~~----~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
.. .+....+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..+|...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22 34455555555442 223343 3444556667788888999999998888875 55677788888888999
Q ss_pred CCHHHHHHHHhcCCCC-----Ch--hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCCH
Q 010642 182 GSLGMAFEVFKGMPEK-----DV--VSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPDDQTF-T--GVLSACSHCGLV 250 (505)
Q Consensus 182 g~~~~A~~~~~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~ 250 (505)
|++++|...+++..+. +. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999988876531 21 2355677888899999999999988764322 1122211 1 223333344433
Q ss_pred HHHHHH--HHHHhhhcCCcCCcchH--HHHHHHHHhcCChHHHHHHHHHC--CCCC---CH----HHHHHHH--HHHHhc
Q 010642 251 DEGMMF--LDRMSKDFGILPNIHHY--GCVVDLLGRAGLLDQAYQLITSM--GVKP---DS----TIWRTLL--GACRIH 315 (505)
Q Consensus 251 ~~a~~~--~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~--~~~p---~~----~~~~~ll--~~~~~~ 315 (505)
+.+.+. +...... ..+.....+ .....++...|+.++|..+++.+ .... .. .+-..++ -++...
T Consensus 242 ~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333332 1111111 111111222 24556677889999999998877 1111 11 1111222 335678
Q ss_pred CchhHHHHHHHHHHHhc
Q 010642 316 KHVTLGERVIEHLIELK 332 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~ 332 (505)
|+.+.|.+.+.......
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-08 Score=90.40 Aligned_cols=245 Identities=10% Similarity=0.029 Sum_probs=166.8
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-+.-.|++..++.-.+ ... ..-..+..+...+.+++...|..+.+ ...+.+.. +|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 44556788998887666 322 22222345566777888888887653 33443433 5666666656555544456
Q ss_pred HHHHHHHHhcCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 184 LGMAFEVFKGMP-EK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 184 ~~~A~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
-+.+..-++... ++ +....-.....+...|++++|++++..- .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665443 32 2222222234566789999999988652 356667778899999999999999999
Q ss_pred HHhhhcCCcCCcchHHHHHHHH----HhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 259 RMSKDFGILPNIHHYGCVVDLL----GRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.|.+. ..| .+...+..++ .-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|..++++..+.+
T Consensus 156 ~~~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 99753 333 3444444443 3345799999999999 555788899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Q 010642 333 AQESGDYVLLLNLYSSVGDW-EKVKELREFMNEK 365 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 365 (505)
|.++.+...++-.....|+. +.+.+.+.++.+.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 7788888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-05 Score=77.65 Aligned_cols=350 Identities=13% Similarity=0.096 Sum_probs=238.9
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
..+++...+.+.+..++. .+-...|.....-.+...|+-++|.......++.++ .+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 346677777777777763 222344555544456678999999998888877653 467788888888888889999999
Q ss_pred HHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 87 LFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 87 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
.|..... .|...|.-+.-.-++.++++..........+ ..| ....|.....+..-.|+...|..+.+...+.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987653 4778888888888888999988888887766 334 3456777778888889999999999988876
Q ss_pred C-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 163 G-YGSKMNLCNSLI------AMYSKCGSLGMAFEVFKGMPEK--D-VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 163 ~-~~~~~~~~~~l~------~~y~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
. -.|+...+.... ....+.|..++|.+.+...... | ...-.+....+.+.++.++|..+|..+... .|
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 5 245555554332 2346788889998888766532 2 223344567788999999999999999984 67
Q ss_pred CHHHHHHHHHHHh-ccCCHHHHH-HHHHHHhhh---------------------------------cCCcCCcchHHHHH
Q 010642 233 DDQTFTGVLSACS-HCGLVDEGM-MFLDRMSKD---------------------------------FGILPNIHHYGCVV 277 (505)
Q Consensus 233 ~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~~~~---------------------------------~~~~p~~~~~~~li 277 (505)
|...|...+..+. +-.+.-++. .+|....+. .|+++ ++..+.
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~ 327 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR 327 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence 7776655444333 222222222 344333321 13222 222233
Q ss_pred HHHHhcCChHH----HHHHHHHC-C------------CCCCHHHHHH--HHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 278 DLLGRAGLLDQ----AYQLITSM-G------------VKPDSTIWRT--LLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 278 ~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
..|-.-...+- +..+...+ + -.|....|.. ++..+-..|+++.|...++.++..-|.-...
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 33322111111 11222222 1 1566666654 5577889999999999999999988888888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
|..-.+++...|..++|...+++..+...
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 88889999999999999999998876554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.2e-08 Score=91.82 Aligned_cols=216 Identities=10% Similarity=0.034 Sum_probs=175.9
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 219 (505)
+.+.|++.+|.-.|+..++.. |.+...|--|.......++-..|+..+.+..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999999886 77889999999999999999999999988764 35667777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVL-----------SACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
..++.-.....+ |..+. ..+.....+....++|-.+....+..+|+..+.+|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 998887653211 11111 12222333455566666666655666888899999999999999999
Q ss_pred HHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 289 AYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 289 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|.+.|+.+ .++|+ ...||.|...++...+.++|+..+.+++++.|.-..+...|...|...|.+++|.+.|=....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 77785 669999999999999999999999999999999999999999999999999999998876543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-06 Score=92.27 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=171.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQT 236 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 236 (505)
|.....|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556678888899999999999999999987532 3457888888888888888889999999874 212356
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC---CHHHHHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP---DSTIWRTLLGAC 312 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 312 (505)
|..|...|.+.+..++|.++++.|.++++ .....|..+++.+.+.++-++|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999999766 67788999999999999999999999887 2223 455566666777
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
.+.|+.+.+..+|+..+...|.....|...+++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999999999999999999999999999999999988764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-06 Score=89.78 Aligned_cols=324 Identities=13% Similarity=0.000 Sum_probs=205.1
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC----C----C----hhHHHHHHHHHHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ----R----D----TVAWNVLISCYIR 108 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----~----~~~~~~li~~~~~ 108 (505)
...|+++.+...+..+.......+..........+...|++++|...++.... . + ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666555442111112233334445556678999998888865421 1 1 1122233455678
Q ss_pred CCChhHHHHHHHHchhccCCCCCCH----HHHHHHHHHHHhccChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDD----VTCLLVLQACAHLGALEFGEKIHRYISEH----GYG-SKMNLCNSLIAMYS 179 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~l~~~y~ 179 (505)
.|++++|...+++... ..-..+. .+.+.+...+...|+++.|...+.+.... |.. ....+...+...+.
T Consensus 465 ~g~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 465 DGDPEEAERLAELALA--ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 9999999999988765 2111121 23455556677899999999998887753 211 11235566777889
Q ss_pred hcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010642 180 KCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA--GVFPD--DQTFTGVLSAC 244 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~ 244 (505)
..|++++|...+++... + ....+..+...+...|++++|...+.+.... ...|. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876431 1 1223445556677789999999999887542 11122 23444556677
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchH-----HHHHHHHHhcCChHHHHHHHHHCCC-C-CCH----HHHHHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHY-----GCVVDLLGRAGLLDQAYQLITSMGV-K-PDS----TIWRTLLGACR 313 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~ 313 (505)
...|+.++|...+...............+ ...+..+...|+.+.|.+++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998885421111111111 1122445568999999999877611 1 111 12345667788
Q ss_pred hcCchhHHHHHHHHHHHhcCC------CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQ------ESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..|+.++|...++++...... ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999998775311 12356678889999999999999999887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-05 Score=73.99 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=45.2
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCC
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDG-YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR 111 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 111 (505)
|..-+.....++++...+..|+..++.- +.....+|...+......|-.+-+.+++++-.+-++..-+.-|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 3333444445555555555555554431 122334455555544445555555555555555444445555555555555
Q ss_pred hhHHHHHHHHch
Q 010642 112 TRDALCLFDNLN 123 (505)
Q Consensus 112 ~~~A~~~~~~m~ 123 (505)
+++|-+.+....
T Consensus 185 ~~eaa~~la~vl 196 (835)
T KOG2047|consen 185 LDEAAQRLATVL 196 (835)
T ss_pred hHHHHHHHHHhc
Confidence 555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-06 Score=75.68 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=149.5
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChhHHHH-HHHHHHHC
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RDTVAWNV-LISCYIRN 109 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 109 (505)
+.+++..+.+..++..+.+++..-.+.. +.+....+.|...|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555544443 22344444455555555555555555555543 22222211 12334445
Q ss_pred CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 110 QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 110 g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
+.+..|+.+...|.. .|+...-..-+.+. .....+++..+..
T Consensus 92 ~i~ADALrV~~~~~D-----~~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rs 133 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD-----NPALHSRVLQLQAA---------------------------------IKYSEGDLPGSRS 133 (459)
T ss_pred cccHHHHHHHHHhcC-----CHHHHHHHHHHHHH---------------------------------HhcccccCcchHH
Confidence 555555555555433 01111111111111 1122344444555
Q ss_pred HHhcCC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 190 VFKGMP-EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 190 ~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
+.++.+ +.+..+.+.......+.|++++|.+-|+...+- |.. ....|+..+.. .+.++.+.|.++..+++++ |++
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieR-G~r 210 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIER-GIR 210 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhh
Confidence 555444 233333333344444555555555555555443 222 23344443322 2335555555555555443 322
Q ss_pred C-------------C--------cchHHHHHH-------HHHhcCChHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 010642 268 P-------------N--------IHHYGCVVD-------LLGRAGLLDQAYQLITSMG----VKPDSTIWRTLLGACRIH 315 (505)
Q Consensus 268 p-------------~--------~~~~~~li~-------~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~ 315 (505)
. | .-+-+.++. .+.+.|+++.|.+.+..|+ ...|++|...+.-. -..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-ccc
Confidence 1 1 112233333 3567899999999999992 23467777655422 234
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
+++..+.+-+.-+++..|-.+.+|..++-.|++..-++-|..++-+
T Consensus 290 ~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6677777788888888988889999999999999999999888754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-05 Score=73.33 Aligned_cols=261 Identities=10% Similarity=0.025 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHH-HHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLL-VLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~-ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
.|+.....+...+...|+.++|+..|++.+. +.|+..+-.- -.-.+.+.|+++....+...+.... ..+..-|-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 3666777778888888888888888887754 4454332111 1122355667776666666555432 11222233
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
.-........++..|..+-++..+- ++..+-.-...+.+.|++++|.-.|+..+. +.| +...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 3333344566777777777766543 344444444677788888888888888776 343 4578888888888888
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHH-HHHH-hcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVV-DLLG-RAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
.+.+|.-.-+...+ -++.+..+.+.+. ..+. ...--++|.+++++. .++|+ ....+.+...|...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 88888877766665 3334455544442 2222 223346788888876 66776 33566677778888888899999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+++.+...|+. ...+.|.+.+...+.+.+|...|....+
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 98888877764 6778888888888888888888876544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-05 Score=70.61 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+-.++...+++.+|++...++++.+|++..++.--..+|.-...+++|+.-|+...+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666666666666666666666666665555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0001 Score=73.54 Aligned_cols=307 Identities=13% Similarity=0.113 Sum_probs=178.4
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH
Q 010642 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT 135 (505)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t 135 (505)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|....|+.+++.-... ...++|...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchH
Confidence 34567888999999999999999999999988764 35677999999999999999999999877551 112333343
Q ss_pred HHHHHHHHH-hccChHHHHHHHHHHHH--------------------------------------------------cCC
Q 010642 136 CLLVLQACA-HLGALEFGEKIHRYISE--------------------------------------------------HGY 164 (505)
Q Consensus 136 ~~~ll~~~~-~~~~~~~a~~i~~~~~~--------------------------------------------------~~~ 164 (505)
+...-..|. +.+..+++..+-.+++. .+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 333333332 23444444444333333 22
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCC--------
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA-GVF-------- 231 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~-------- 231 (505)
+.|+.+..-+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2222222223334455555555555544332 335566666666666666677776666655432 110
Q ss_pred ----------CCHHHHHHHHHHHh------cc-----------------CCHHHHHHHHHHH----hh---h--------
Q 010642 232 ----------PDDQTFTGVLSACS------HC-----------------GLVDEGMMFLDRM----SK---D-------- 263 (505)
Q Consensus 232 ----------p~~~t~~~ll~~~~------~~-----------------g~~~~a~~~~~~~----~~---~-------- 263 (505)
--..|...++..+- .. ++..++......+ .. .
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 00011111111111 00 0000010000000 00 0
Q ss_pred -cCCcCCc--------chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 264 -FGILPNI--------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 264 -~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
....|+. ..|....+.+.+.+..++|.-.+.+. ++.| ....|......+...|+.++|.+.|......+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111111 12334455666777777776666555 4444 34456666666778889999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHH--HHHHHHhCCC
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKE--LREFMNEKGL 367 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~ 367 (505)
|+++....++..++.+.|+-..|.. ++..+.+.+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 9999999999999999998877777 7777776553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-05 Score=71.11 Aligned_cols=346 Identities=12% Similarity=0.051 Sum_probs=185.3
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhC------
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT-LMDLYSTF------ 78 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~------ 78 (505)
.+..++.+|++++..-.+...+ +...++.+..+|-...++..|-..++++-..- |...-|.. -...+.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHH
Confidence 4556677788887777665422 66667777777777777777777777664332 21111110 00111233
Q ss_pred ----------------------------CCHHHHHHHHhcCC-CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC
Q 010642 79 ----------------------------EKSFEACKLFDEIP-QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC 129 (505)
Q Consensus 79 ----------------------------g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 129 (505)
+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+...+. .|.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGy 176 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGY 176 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-cCC
Confidence 34444444444444 244555555566667788888888888888763 444
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchh----------------------------HHHHHHHHHHhc
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMN----------------------------LCNSLIAMYSKC 181 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~----------------------------~~~~l~~~y~~~ 181 (505)
.| ...|+..+.. -+.++++.|.+...++++.|+...+. .+|.-...+.+.
T Consensus 177 qp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 177 QP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred Cc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 44 4566655544 46678888888888888776432211 122233345678
Q ss_pred CCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 182 GSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 182 g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-+.-+.+.+. ....||..++-.|++..-++.|-.+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHH
Confidence 8888888888888743 666655443222 23445444444444444433 2346888888888888888888777
Q ss_pred HHHHhhhcCCc-CCcchHHHHHHHHH-hcCChHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCch---hHHHHHHHHHH
Q 010642 257 LDRMSKDFGIL-PNIHHYGCVVDLLG-RAGLLDQAYQLITSMGVKPD--STIWRTLLGACRIHKHV---TLGERVIEHLI 329 (505)
Q Consensus 257 ~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~---~~a~~~~~~~~ 329 (505)
+.+-... ... .+...|+ |++++. -.-..++|++-++.+.-... ......-+.--...++- ..+.+-++..+
T Consensus 333 LAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~L 410 (459)
T KOG4340|consen 333 LAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETL 410 (459)
T ss_pred HhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6654321 111 1222232 333333 23455666555554410000 00000111111111111 11222222222
Q ss_pred HhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 330 ELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++.- .+...-...|.+..++..++++|..-.+
T Consensus 411 E~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 411 EKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2221 1233445567788889999999876554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-05 Score=73.74 Aligned_cols=100 Identities=14% Similarity=-0.041 Sum_probs=75.5
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
....|+++.|+.+|.+.+...+. |...|+.-..+++..|++++|.+=-.+.++.. +.=..-|+-+..+..-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence 45689999999999999887644 77888888999999999999988777776654 22356778888888888999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHH
Q 010642 85 CKLFDEIPQR---DTVAWNVLISCY 106 (505)
Q Consensus 85 ~~~~~~~~~~---~~~~~~~li~~~ 106 (505)
+..|.+-.+. |...++-+..++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999875542 344444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-05 Score=74.88 Aligned_cols=325 Identities=11% Similarity=0.161 Sum_probs=188.2
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC----------------------HHHHHHHH
Q 010642 31 FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK----------------------SFEACKLF 88 (505)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~ 88 (505)
..|.+|.+-|.+.|.++.|..++++.+..- .+..-++.+.+.|+.... ++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 468888888999999999999998887652 344445555555544321 22223333
Q ss_pred hcCCC---------------CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC------HHHHHHHHHHHHhcc
Q 010642 89 DEIPQ---------------RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD------DVTCLLVLQACAHLG 147 (505)
Q Consensus 89 ~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~t~~~ll~~~~~~~ 147 (505)
+.+.+ .++..|..-+. ...|+..+-...|.+..+ .+.|- ...|..+.+.|-..|
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~---~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK---TVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH---ccCcccCCCChhhHHHHHHHHHHhcC
Confidence 33322 12333433332 235667777777777766 34443 234677788888899
Q ss_pred ChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCC---C------------------CChhHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMP---E------------------KDVVSWS 203 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~------------------~~~~~~~ 203 (505)
+++.|..+|++..+..++.- ..+|..-..+=.+..+++.|.++.+... . ++...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 99999999999888755432 4566667777778888888888887653 1 1233555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCC----------------------------------CCHH-HHHHHHHHH---h
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAGVF----------------------------------PDDQ-TFTGVLSAC---S 245 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------------------------p~~~-t~~~ll~~~---~ 245 (505)
..+..--..|-++....+|+.+.+..+. |+.. .|+..+.-+ .
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 5555555556666666666666553322 2221 122222211 1
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcch--HHHHHHHHHhcCChHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCchh
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHH--YGCVVDLLGRAGLLDQAYQLITSM--GVKPD--STIWRTLLGACRIHKHVT 319 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~ 319 (505)
..-.++.|..+|++..+ +.+|...- |-.....=-+-|....|+.++++. ++++. ...|+..|.-....=-+.
T Consensus 562 gg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred cCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 23356677777777765 55553221 111112222346666677777766 43332 235666654433333345
Q ss_pred HHHHHHHHHHHhcCCCCc--hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 320 LGERVIEHLIELKAQESG--DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
....++++.++.-|++.. .-.-...+=.+.|..+.|..++..-.+
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 556677777766554322 122345566788999999999876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-05 Score=83.70 Aligned_cols=327 Identities=11% Similarity=-0.038 Sum_probs=205.9
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------CC--hhHHHHHHHHHHhC
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ------LD--SQLMTTLMDLYSTF 78 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~~~ 78 (505)
..|+++.+..+++.+.......+..........+...|+++++...+..+...--. +. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566666666655422111112222233344556778999999988877543111 11 12222333456678
Q ss_pred CCHHHHHHHHhcCCC----CC----hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CC--CHHHHHHHHHHHHhcc
Q 010642 79 EKSFEACKLFDEIPQ----RD----TVAWNVLISCYIRNQRTRDALCLFDNLNREESGC-KP--DDVTCLLVLQACAHLG 147 (505)
Q Consensus 79 g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p--d~~t~~~ll~~~~~~~ 147 (505)
|++++|...+++... .+ ..+++.+...+...|++++|...+++........ .+ ...++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 999999998877532 22 2345667778889999999999998876410111 11 1234555667788899
Q ss_pred ChHHHHHHHHHHHHc----CCC---CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--ChhHHHHHHHHHHhC
Q 010642 148 ALEFGEKIHRYISEH----GYG---SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------K--DVVSWSAMISGLAMN 212 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~----~~~---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~~~~~ 212 (505)
+++.|...+++.... +.. .....+..+...+...|++++|...+.+... + ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 999999998877653 221 1233455667778888999999998887632 1 123444566678889
Q ss_pred CChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch----HHHHHHHHHh
Q 010642 213 GHGRDAIESFGAMQRAG--VFPDDQ--T-F-TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH----YGCVVDLLGR 282 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g--~~p~~~--t-~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~----~~~li~~~~~ 282 (505)
|++++|...+.+..... ..+... . . ...+..+...|+.+.|.+.+...... .. ..... +..+..++..
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~-~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EF-ANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CC-ccchhHHHHHHHHHHHHHH
Confidence 99999999998875421 111110 1 0 11223445588999999988776531 11 11111 3456677889
Q ss_pred cCChHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 283 AGLLDQAYQLITSM-------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.|+.++|...+++. +..++ ..+...+..++...|+.+.|...+.+..+...+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999988876 32222 2355566678889999999999999999887443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-06 Score=84.68 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=176.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
++|-......+...+...|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4666667788999999999999999999976 4788889999999999999999888777 57899999999998
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 321 (505)
.....-+++|+++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998876542 1122222334578999999999876 5555 467898888889999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQM 401 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+-+..+ |-.+.+..+.- ..-+..+++.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENymlvs----vdvge~eda~~A 609 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYMLVS----VDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhhhh----hhcccHHHHHHH
Confidence 999999999999999999999999999999999999999998877543 44444432221 133566666666
Q ss_pred HHHHHHHHHHcCc
Q 010642 402 LDEINKQLKIAGY 414 (505)
Q Consensus 402 l~~l~~~m~~~g~ 414 (505)
..++.. |++.+-
T Consensus 610 ~~rll~-~~~~~~ 621 (777)
T KOG1128|consen 610 YHRLLD-LRKKYK 621 (777)
T ss_pred HHHHHH-hhhhcc
Confidence 666543 344433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-08 Score=57.31 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 163 GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 163 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
|++||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.8e-06 Score=75.38 Aligned_cols=182 Identities=9% Similarity=-0.007 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DV---VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD--QTF 237 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 237 (505)
.....+..+...|.+.|++++|...|+++.+ | +. .++..+..+|.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667777778888888888888876653 2 21 35666777788888888888888888764322111 134
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHH
Q 010642 238 TGVLSACSHC--------GLVDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308 (505)
Q Consensus 238 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 308 (505)
..+..++.+. |+.++|.+.++.+... .|+. ..+..+.... . .... . ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~~---~--------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRNR---L--------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHHH---H--------HHHHHHH
Confidence 4444445443 6677777777777653 2332 1222111110 0 0000 0 0011244
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...+...|+++.|...++.+.+..|.+ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566788999999999999999887654 368889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.2e-08 Score=56.86 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010642 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP 92 (505)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 92 (505)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-05 Score=71.69 Aligned_cols=344 Identities=11% Similarity=0.060 Sum_probs=206.5
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
+..+.++..|+.+++--...+-.-...+-.-+..++...|++++|...+..+.... .++..++-.|...+.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 45567888888888877654433222233334456668899999999998887654 55666777777667778889999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
..+-...++ ++..-..|...-.+.++-++-+.+-+.+.. .. .--.++.+..-....+.+|..++..+...+
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TL---EDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hH---HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 988877654 334445566666777777777766666644 11 222344444445567899999999888753
Q ss_pred CCchhHHHH-HHHHHHhcCCHHHHHHHHhcC----CC-------------------------------------------
Q 010642 165 GSKMNLCNS-LIAMYSKCGSLGMAFEVFKGM----PE------------------------------------------- 196 (505)
Q Consensus 165 ~~~~~~~~~-l~~~y~~~g~~~~A~~~~~~m----~~------------------------------------------- 196 (505)
|+-...|. +.-.|.|..-++-+.++++.- +.
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 33222222 223444544444444433211 10
Q ss_pred -CC---------------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCC
Q 010642 197 -KD---------------------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA-----CSHCGL 249 (505)
Q Consensus 197 -~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~g~ 249 (505)
.| +.+--.++--|.+.++..+|..+.+++.- ..|-......+..+ .....-
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 00 01112233446667777777777665421 22333322222221 111222
Q ss_pred HHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 250 VDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
+.-|.+.|+..-+. +..-|. .--.++...+.-..++++.+-+++.+ =+..|..---.+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 44566666655443 444332 23345666666677888888888777 122233323346788889999999999998
Q ss_pred HHHHhcCCCCchHH-HHHHHHHhCCCHHHHHHHHHHH
Q 010642 327 HLIELKAQESGDYV-LLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 327 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++...+..+..+|. .|.+.|.+.++.+.|+.++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88777755666776 5678889999999998876544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=74.62 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH-HHHHHHHHHHhcc-ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV-TCLLVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
++..+-..+...++.++|+.+..++.. +.|+.. +|+.-..++...+ +++++...++.+.+.. +.+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR----LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 344444555556666666666666655 334332 2333333333444 3455555555555543 33444444443
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.++.+.|+. ..++++.+++++.+...+ |...|.....++...|+++++++
T Consensus 114 ~~l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 114 WLAEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444431 013344444444433221 33344444444444444444444
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhc---CC----hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc----CchhHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRA---GL----LDQAYQLITSM-GVKP-DSTIWRTLLGACRIH----KHVTLGE 322 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~ 322 (505)
.++++++. .+-+...|+...-.+.+. |. .+++.++..++ ...| |...|+.+...+... ++..+|.
T Consensus 164 ~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 44444432 112223333322222222 11 13444444333 3344 345666666666552 3345577
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCC------------------CHHHHHHHHHHH
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVG------------------DWEKVKELREFM 362 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 362 (505)
..+.++.+.+|.++.....|++.|+... ..++|.++++.+
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7777766666777677777777776532 236677777777
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-05 Score=76.98 Aligned_cols=188 Identities=14% Similarity=0.210 Sum_probs=88.1
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
......+.+|..+++.+.... ...-.|..+.+-|+..|+++.|+++|-+.- .++-.|..|.+.|++++|.++-
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 334445555555555444432 112234445555666666666666655432 2334455555666666665554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCC-
Q 010642 223 GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD- 301 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~- 301 (505)
.+.. |.......|..-..-.-+.|++.+|.++|-.+.. |+ .-|.+|-+.|..++.+++.++- .|+
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~-----~aiqmydk~~~~ddmirlv~k~--h~d~ 880 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PD-----KAIQMYDKHGLDDDMIRLVEKH--HGDH 880 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----ch-----HHHHHHHhhCcchHHHHHHHHh--Chhh
Confidence 4332 2232333444444444555555555555443321 22 2345555555555555555554 111
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHH
Q 010642 302 -STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 302 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
..|-..+..-+-..|+...|+..|-+. .-|.+-+++|-..+.|++|.++-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence 223333444444555555555444332 22344445555555555554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-05 Score=82.52 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=184.2
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhC-CC---CChhHHHHHHHHHHhCCCHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG-YQ---LDSQLMTTLMDLYSTFEKSFEACK 86 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~ 86 (505)
++.|.++ ++..... +-+...|-.-+.-..+.++.+.|+.+.+++++.= +. --..+|.+++++-...|.-+...+
T Consensus 1441 pesaeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3344444 4443332 2344578888888889999999999999987642 21 123588899988888898899999
Q ss_pred HHhcCCCC--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 87 LFDEIPQR--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 87 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
+|++..+- .-..|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.++++.-
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l- 1594 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL- 1594 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-
Confidence 99998762 3456889999999999999999999999883 44556788888999999999999999999988862
Q ss_pred CC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010642 165 GS--KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD--QTF 237 (505)
Q Consensus 165 ~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~ 237 (505)
|. ........+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. +.|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 33 456667778888999999999999998763 34568999999999999999999999999998887765 456
Q ss_pred HHHHHHHhccCCHHHHH
Q 010642 238 TGVLSACSHCGLVDEGM 254 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~ 254 (505)
.-.+..=.+.|+-+.++
T Consensus 1675 KkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHHHHhcCchhhHH
Confidence 66666555556644433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-06 Score=79.67 Aligned_cols=248 Identities=10% Similarity=0.047 Sum_probs=182.3
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
.-+.++|+..+|.-.|+...+ .-|-+...|..|....+..++-..|...+.+.++.. |.+..+.-+|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVk---qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVK---QDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHh---hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 346788999999999988877 234456788888888888888889999999999875 6678888899999999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHH---------HHHHhCCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 184 LGMAFEVFKGMPEKD-VVSWSAMI---------SGLAMNGHGRDAIESFGAMQ-RAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 184 ~~~A~~~~~~m~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
-..|...++.-.... ...|.... ..+..........++|-++. +.+.++|......|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887653110 00000000 11122223345566666665 44544666666777777888899999
Q ss_pred HHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 253 GMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 253 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
|...|+.... ++| |...||.|.-.++...+.++|...|++. .++|+ +.++..|.-+|...|.+++|...|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999985 455 5778999999999999999999999998 88897 4477788889999999999999999887
Q ss_pred HhcCCC----------CchHHHHHHHHHhCCCHHHHHHH
Q 010642 330 ELKAQE----------SGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 330 ~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
.+.+.+ ...|..|=.++.-.++.|.+.++
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 765331 13566665666666666644443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.8e-06 Score=70.59 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=106.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 457777777665444322211 11 022235666777777777765 3455677888888888899999
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHH-HhcCc--hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGAC-RIHKH--VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++|...|++. .+.| +...+..+..++ ...|+ .++|.++++++.+.+|.++.++..+...+.+.|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988888 5556 455666666653 56666 58999999999999999989999999999999999999999999
Q ss_pred HHhCCC
Q 010642 362 MNEKGL 367 (505)
Q Consensus 362 m~~~~~ 367 (505)
+.+..-
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 876543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00068 Score=65.84 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=88.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHH----HHHHHHCC
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVL----ISCYIRNQ 110 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l----i~~~~~~g 110 (505)
+=++-+...+++++|.+...+++..+ +.|...+..-+-+..+.+.+++|.++.+.-... .+++.. .-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33555677889999999999998876 556666776777788999999999777654431 122222 33445789
Q ss_pred ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
..++|+..++-... -|..+...-...|-+.+++++|..+|+.+.+.+.
T Consensus 94 k~Dealk~~~~~~~------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cHHHHHHHHhcccc------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99999999884422 2334666667778899999999999999987653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00041 Score=62.84 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=142.8
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHHHHHHHHHHhCC
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG---MPEKDVVSWSAMISGLAMNG 213 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g 213 (505)
...+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.=++. +...+..++--+-..+...|
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 344555567788888888888888864 66888888888999999999988876654 34566677777777888889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH----H---HHH------HHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFT----G---VLS------ACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGC 275 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~----~---ll~------~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ 275 (505)
+.+.++...++-.+ +.||..... . +.. .....+.+.++..-.+...+. .|. ...+..
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRV 312 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeehe
Confidence 99988888888776 566653221 1 111 123456666666666666543 333 234455
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
+-.++...|++-+|++.-.+. .+.|| +.++---..+|.....++.|+.-++.+.+.++.+..+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 667778889999999988887 77776 6677777788888899999999999999999887543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-05 Score=73.52 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=194.0
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHHCCChhH
Q 010642 38 KCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD-TVAWNVLISCYIRNQRTRD 114 (505)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 114 (505)
.+....|+++.|...|...+... ++|.+.|..-...|++.|++++|.+=-.+..+ |+ ...|+-+..++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45567899999999999999887 45999999999999999999998876655543 33 4579999999999999999
Q ss_pred HHHHHHHchhccCCCCC-CHHHHHHHHHHHHhc---cC------------------------------------------
Q 010642 115 ALCLFDNLNREESGCKP-DDVTCLLVLQACAHL---GA------------------------------------------ 148 (505)
Q Consensus 115 A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~---~~------------------------------------------ 148 (505)
|+..|.+-.+ ..| |...++-+..+.... ++
T Consensus 89 A~~ay~~GL~----~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLE----KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhh----cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999998765 333 344444454444111 00
Q ss_pred ---hHHHHHHHHHHHHc--------C-------CCC------------c----------hhHHHHHHHHHHhcCCHHHHH
Q 010642 149 ---LEFGEKIHRYISEH--------G-------YGS------------K----------MNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 149 ---~~~a~~i~~~~~~~--------~-------~~~------------~----------~~~~~~l~~~y~~~g~~~~A~ 188 (505)
.+...+.+..+... + ..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00000010000000 0 000 0 000122344444444444444
Q ss_pred HHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--C----HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 189 EVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP--D----DQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 189 ~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
+-+....+ .+..-++....+|...|.+.+....-....+.|..- + ...+..+..++.+.++++.|+..|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 44443322 222234444555666666555555444444333210 0 011222333555667777888877776
Q ss_pred hhhcCCcCCcchHH-------------------------HHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 261 SKDFGILPNIHHYG-------------------------CVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 261 ~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
... ...|+...-. .-...+.+.|++..|.+.+.++ ...| |...|.....+|.
T Consensus 325 Lte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred hhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 654 2333222110 0122345667888888888777 4445 4567777777888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+.|++..|..-.+..++++|+....|.-=..++....+|+.|.+.|.+-.+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888777777777777777778888888877665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-05 Score=76.49 Aligned_cols=232 Identities=10% Similarity=0.046 Sum_probs=114.6
Q ss_pred ChhhHHHHHH--HHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----------
Q 010642 29 NPFACSFAIK--CCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R----------- 94 (505)
Q Consensus 29 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----------- 94 (505)
|..|=..++. .|...|+.+.|.+-.+.+. +..+|..+..++.+..+++-|.-.+..|.. +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444432 2345566666655444332 345667777777777666666666655542 0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...-....-.....|..++|+.+|++-++ |..+=..|...|.+++|.++-+.--+ +. -..+|...
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNY 864 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHH
Confidence 101111112223345556666666665544 22333344555666666555432111 11 12234444
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----------------------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
..-+-..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|...++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 4444445556666666554432 1233333333444455666666666655443
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
|.+++...+-.|+.++|-++-++-- |......|.+.|-..|++.+|..+|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444555555666666665544331 3334445666666667777776666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-05 Score=72.85 Aligned_cols=181 Identities=12% Similarity=0.020 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Chh---H
Q 010642 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM---NLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVV---S 201 (505)
Q Consensus 131 pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~---~ 201 (505)
.....+..+...+...|+++.|...++.+.+.. +.++ .++..+..+|.+.|++++|...|+++.+ | +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677788888999999999999999998864 3332 4678889999999999999999998863 2 222 4
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch
Q 010642 202 WSAMISGLAMN--------GHGRDAIESFGAMQRAGVFPDDQ-TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH 272 (505)
Q Consensus 202 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 272 (505)
+..+..++.+. |++++|.+.|+.+... .|+.. ....+... .. . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH-H--------HH
Confidence 55566666654 7789999999999874 44432 22111111 00 0 0000 0 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GV---KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
...+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 224566788899999999888887 22 23 346788888999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00052 Score=70.48 Aligned_cols=242 Identities=14% Similarity=0.161 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
....|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+.+..-.| .+-+.|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence 3567999999999999999999888665 356788999999999999999999988888775444 455678
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----------------------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
+-+|++.+++.+-+++...-.. .++..|..+...+...|++..|.+.-++.
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ 1246 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------ 1246 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------
Confidence 9999999998887776532110 13344555555555566665555544432
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
-+..||..+-.+|...+.+.-|. |-. ..+.....-..-|+.-|...|.+++...+++.. |+.. ....|+-|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 14456666666666555443322 211 012223334556777777778888777777766 5442 334555555
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
-.|.+-. ++.-.+.++..... ...--+++++..+.-|.+..-++.+-.+
T Consensus 1321 iLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1321 ILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5554433 33333333322211 1122467777777778877777765443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00028 Score=66.17 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
.++..+-..+...+..++|+.+.+.+.+. +..+|+.....+...| ++++++..++++.. . -+-+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~-npknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--D-NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--H-CCcchHHhHHHHH
Confidence 35555666677788999999999988753 5567777777777777 67999999999977 2 2334455665555
Q ss_pred HHHhccCh--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhC
Q 010642 142 ACAHLGAL--EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMN 212 (505)
Q Consensus 142 ~~~~~~~~--~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 212 (505)
.+.+.+.. +.+..+.+.+++.. +-+..+|+....++.+.|++++|++.++++.+ .|..+|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 55556652 56677777887765 56777888777777778888888888887764 3556676665555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00019 Score=73.47 Aligned_cols=141 Identities=16% Similarity=0.252 Sum_probs=109.6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
.+..|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-.+++...+++ .-.|.+. +.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 4567999999999999999999887553 36778999999999999999999998888775 5556554 5799
Q ss_pred HHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
-+|++.+++.+.++++. -||......+..-|...|.++.|.-++... +.|..|...+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 367777777778888888888887776643 456666666666666666554
Q ss_pred HH
Q 010642 358 LR 359 (505)
Q Consensus 358 ~~ 359 (505)
.-
T Consensus 1242 ~a 1243 (1666)
T KOG0985|consen 1242 AA 1243 (1666)
T ss_pred Hh
Confidence 33
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-05 Score=67.06 Aligned_cols=154 Identities=9% Similarity=0.087 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 254 (505)
+-.|...|+++.+....+.+..+. ..|...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445677777766654443332221 01223566677777777776643 235677888888888999999999
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHH-HHhcCC--hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDL-LGRAGL--LDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
..|++..+- .+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888752 23356677777776 467677 58999999888 5555 56678888888899999999999999999
Q ss_pred HhcCCCCchH
Q 010642 330 ELKAQESGDY 339 (505)
Q Consensus 330 ~~~~~~~~~~ 339 (505)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988776544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.5e-05 Score=73.64 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=161.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
+|--..-..+...+.+.|-+..|..+|+++ ..|..+|.+|...|+..+|..+..+..+ -+||+..|..+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le----k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE----KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc----CCCcchhHHHhhh
Confidence 344445566777888899999999999874 5688889999999998888888776643 5788888888888
Q ss_pred HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 218 (505)
......-+++|.++.++.-.. ....+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777777887777654432 1222222234478888888888865432 446788888888888889888
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 219 IESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + .-+...|-..+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888888776 46665 57888888999999999999888888874 4 445556667777788888999988888877
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-05 Score=65.96 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 282 (505)
..+-..+...|+.+....+..+.... -.-|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666666555554332 111223333456666667777777777777665 555666677777777777
Q ss_pred cCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
.|++++|..-|.+. .+.| +....+.|.-.+.-.|+.+.|..++.......+.++.+-..|.......|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777776666665 3444 34456666666777777777777777777666666666677777777777777776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-05 Score=65.84 Aligned_cols=108 Identities=6% Similarity=-0.125 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445566667777777777777664 22334556666666677777777777777766 3344 45566666666777
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
.|+.++|+..++..++..|+++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777666665544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00036 Score=61.08 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH-HHH
Q 010642 78 FEKSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF-GEK 154 (505)
Q Consensus 78 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~-a~~ 154 (505)
.|++..++..-..... .++..-.-+-++|...|++...+. ++.. +-.|....+..+.......++.+. ..+
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~---~~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE---GKATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc---ccCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 4556555554443322 233333344556666666543322 2211 223333333333333333333332 233
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 155 IHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
+.+.+.......+......-...|...|++++|.+...... +......=...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 44444444334444444445566788888888888887743 3333333344556677778888888888763 255
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHH
Q 010642 235 QTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTL 308 (505)
Q Consensus 235 ~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 308 (505)
.|.+-|.+++.+ .+.+..|.-+|++|.+ ..+|+..+.+...-++...|++++|..++++. .-..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666665543 4556777777777765 35566666666666666677777777777666 222345555555
Q ss_pred HHHHHhcCch-hHHHHHHHHHHHhcCCC
Q 010642 309 LGACRIHKHV-TLGERVIEHLIELKAQE 335 (505)
Q Consensus 309 l~~~~~~g~~-~~a~~~~~~~~~~~~~~ 335 (505)
+......|.. +.-.+.+.++....|..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 5444444443 33344555555544443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00032 Score=69.54 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=139.5
Q ss_pred HHHhCCCHHHHHHHHhcCCCCChhH--HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH
Q 010642 74 LYSTFEKSFEACKLFDEIPQRDTVA--WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 74 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
+......+.+|+.+++.+..+++.+ |-.+..-|+..|+++-|.++|.+.- .++-.+..|.+.|.++.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccccHHH
Confidence 3444556666666666665543332 4455566666666766666665441 23445556666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF 231 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 231 (505)
|.++-.+. +|.......|-+-..-.-+.|++.+|+++|-.+..|+. .|..|-+.|..++.+++..+- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----C
Confidence 66554332 23233444555555556666777777777776666654 345566677777666665543 2
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCC-CC---HHHH
Q 010642 232 PDD--QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVK-PD---STIW 305 (505)
Q Consensus 232 p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~---~~~~ 305 (505)
|+. .|...+..-+...|++..|...|-+.. -|.+-+.+|-..+.+++|.++-+.-|-. .. ...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 222 344555566666677777766655443 2445566666666666666665544111 00 1122
Q ss_pred HH------HHHHHHhcC-------------chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 306 RT------LLGACRIHK-------------HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 306 ~~------ll~~~~~~g-------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.. .+..+-++| -++.|..+.+-..+.. -+....-+..-+...|++++|-+-+-+..+.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11 112222333 3333333333332222 12345566666778888888877666555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=66.47 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=91.5
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555543 3344 3556788889999999999999998 5556 57788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 333 AQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 333 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|.++..+..+..++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00016 Score=75.58 Aligned_cols=236 Identities=9% Similarity=-0.006 Sum_probs=145.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIR 108 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 108 (505)
+...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34567788888888888888888888666553 22333444444466666665554443 33444444
Q ss_pred CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
..++.-...+...|.. ..-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.
T Consensus 96 ~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 96 NLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 5555444444445533 33455677788888888899999999999988887 67888888888888888 888888
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHhhhcCCc
Q 010642 189 EVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF-TGVLSACSHCGLVDEGMMFLDRMSKDFGIL 267 (505)
Q Consensus 189 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (505)
+++.+.. ..|...+++.++.++|.++... .|+...+ ..++. .+....+..
T Consensus 170 ~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~ 220 (906)
T PRK14720 170 TYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFT 220 (906)
T ss_pred HHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccc
Confidence 8876543 2366677888888888888774 3333322 22222 222111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
--+.++-.+...|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22233444555566666777777777766 4444 3334444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00013 Score=74.62 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=54.2
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
...|.+.-|..-|-+. -..| ...+|..+...+..+.+++-|...|.+...+.|.+...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555554444333 1222 4556666666677777888888888888888888877777777777777877777777
Q ss_pred HHH
Q 010642 359 REF 361 (505)
Q Consensus 359 ~~~ 361 (505)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.1e-05 Score=65.33 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=109.0
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
|..+ ..+-..+...|+-+.+..+...... .|....+.++....+.|++.+|+..|++... .-++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~---l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR---LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc---cCCCChhhhhHHH
Confidence 4444 4555566666776666666665432 3555666677888888888888888888765 4566777888888
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
-+|.+.|+.+.|..-|.+..+.. +-++.+.|.|.-.|.-.|+++.|..++.... ..|...-..+.......|++++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 88888888888888888887763 4556677777777777788888877776543 2355666666667777777777
Q ss_pred HHHHHHHH
Q 010642 218 AIESFGAM 225 (505)
Q Consensus 218 A~~~~~~m 225 (505)
|.++..+-
T Consensus 221 A~~i~~~e 228 (257)
T COG5010 221 AEDIAVQE 228 (257)
T ss_pred HHhhcccc
Confidence 77765543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.5e-05 Score=76.41 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 275 (505)
.++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+.+.+++|....++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577888888999999999999999999988 57776 4566778889999999999999999986 33345667778
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 353 (505)
+..++.+.|++++|..+|++. .-.|+ ..++..+..++...|+.++|...|++..+...+....|+.++. +..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 888899999999999999998 33444 6788889999999999999999999999887666566554432 233
Q ss_pred HHHHHHHHHH
Q 010642 354 KVKELREFMN 363 (505)
Q Consensus 354 ~a~~~~~~m~ 363 (505)
.-...++.+.
T Consensus 234 ~~~~~~~~~~ 243 (694)
T PRK15179 234 ADLAALRRLG 243 (694)
T ss_pred HHHHHHHHcC
Confidence 3344555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00015 Score=75.89 Aligned_cols=228 Identities=8% Similarity=0.086 Sum_probs=139.7
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHH-HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 94 RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC-LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
.+...|..|+..|...+++++|.++.+.... ..|+...+ ..+...+.+.++.+.+..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~----------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGILSLSRRPLNDSNLL--NLID----------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHHHHHhhcchhhhhhh--hhhh-----------
Confidence 4678899999999999999999999996655 55665433 3333355666666555544 2222
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
......++.-...+...|.. .+..++-.+..+|-+.|+.++|...|+++.+.. .-|....|.+...++.. ++
T Consensus 92 ----~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 ----SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ----hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22222222222222222221 133356667778888888888888888888765 22556777777777777 88
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHH---HHHh--cCChHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCchhHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVD---LLGR--AGLLDQAYQLITSM----GVKPDSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~---~~~~--~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a 321 (505)
++|.+++.+....+ .+..-|+.+.. -++. ..+.+.-.++.+.+ +..--..++--+...|...++++++
T Consensus 166 ~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 166 EKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 88888777776531 01111111111 1111 11222222222222 3233345566666788899999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
..+++.+++.+|.|..+..-++..|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999888888888876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=71.30 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=172.3
Q ss_pred CChhHHHHHHH--HHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCC--------CCCC
Q 010642 63 LDSQLMTTLMD--LYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG--------CKPD 132 (505)
Q Consensus 63 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~pd 132 (505)
=|..+.-++++ .|..-|+.+.|.+-.+.+. +...|..|.+.+.+..+.+-|.-.+-.|..- .| ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~a-RgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-RGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-hhHHHHHHHHhCCc
Confidence 36667777775 4777899999988887765 4578999999999998888777666665431 11 1222
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-DVVSWSAMISGLAM 211 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~ 211 (505)
.+=.-+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.+++|.++-+.-..- -..||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222333467899999999999887643 4556788899999999886543221 12345555555556
Q ss_pred CCChHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch
Q 010642 212 NGHGRDAIESFGAM----------QRAG---------VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH 272 (505)
Q Consensus 212 ~g~~~~A~~~~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 272 (505)
.++.+.|++.|++. .... -+.|...|.......-..|+.+.|+.+|.....
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------- 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------- 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------
Confidence 67777777777642 2111 123445566667777789999999999988864
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
|-+++...+-.|+.++|-++-++-| |......|.+.|-..|++.+|..+|.++..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5678888899999999999999875 666666788999999999999999888654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0033 Score=60.65 Aligned_cols=339 Identities=12% Similarity=0.057 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC--ChhHHHHHHH
Q 010642 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR--DTVAWNVLIS 104 (505)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~ 104 (505)
+-|..+|..+++-+... ..++++..+++++.. ++.....|..-|..-.+..+++..+++|.+.... ++..|..-++
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44888999999876665 999999999999764 4667889999999999999999999999988753 6777877776
Q ss_pred HHHH-CCChh----HHHHHHHHchhccCCCCCCHH-HHHH---HHH------HHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 105 CYIR-NQRTR----DALCLFDNLNREESGCKPDDV-TCLL---VLQ------ACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 105 ~~~~-~g~~~----~A~~~~~~m~~~~~~~~pd~~-t~~~---ll~------~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
---+ +|+.. ...+.|+-...+ .|+.+-.. .|+. .+. -+....+++..++++++++..-+..=..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~k-ig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEK-IGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHH-hccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 3322 22222 223344443332 44433322 1222 222 2333445667777777776542211111
Q ss_pred HHHH------HHHH-------HHhcCCHHHHHHHHhcCCC------CC---------------hhHHHHHHH--------
Q 010642 170 LCNS------LIAM-------YSKCGSLGMAFEVFKGMPE------KD---------------VVSWSAMIS-------- 207 (505)
Q Consensus 170 ~~~~------l~~~-------y~~~g~~~~A~~~~~~m~~------~~---------------~~~~~~li~-------- 207 (505)
.|+- =++- --+...+..|.++++++.. ++ +..|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2211 0110 1123345556666554421 00 001211111
Q ss_pred --------------------H---------------------HHhCCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010642 208 --------------------G---------------------LAMNGH-------GRDAIESFGAMQRAGVFPDDQTFTG 239 (505)
Q Consensus 208 --------------------~---------------------~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ 239 (505)
. +...|+ .+++.++++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111111 2334444444332211112223322
Q ss_pred HHHHHh---ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCC-CHHHHHHHHHHH
Q 010642 240 VLSACS---HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 240 ll~~~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~ll~~~ 312 (505)
+.+.-- .....+....+++++.....+.|+. +|-.++..-.|..-+..|..+|.+. +..+ ++.+..+++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222111 1112445556666666654555553 6777888888888899999999988 4444 566777777665
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
+ .++.+.|.++|+.-++..++++..-...++-+...++-..+..+|++....++.++
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 4 56788999999998888887776666788888899999999999999988766554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.1e-06 Score=51.32 Aligned_cols=35 Identities=34% Similarity=0.615 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=68.59 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 184 LGMAFEVFKGMPE------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 184 ~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.+++..-+.++. ++...+...+.+.........+..++.+-.+ ..-...-|..-+ .+...|.+++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4455555555542 3455566666555444333333333332222 111223344444 345679999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
..+.. ..+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+++++......|.+
T Consensus 330 ~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 99987 44456667777889999999999999999998 66777 5677778899999999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..|..|..+|...|+..++.....+..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999988877664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.1e-05 Score=73.21 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=64.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
|+..+...++++.|+.+|+++.+.++..+..++..+...++..+|++++++... ..+-|...+..-...+.+.++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHH
Confidence 333444455566666666665555545555555555555555556665555544 12223444444444455555556
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.|.++.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666655555543 3344455555555555555555555555554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00031 Score=72.68 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
++..+-.|.....+.|.+++|+.+++...+ +.||. .....+..++.+.+.+++|....++..... +.+....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 356666666666667777777777766654 44543 344555566666666666666666666654 445555666
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPEKD---VVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
+..++.+.|++++|..+|++...++ ..+|..+..++-..|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666655332 34555555666666666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-05 Score=73.02 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566666777888888888888764 233 4455777777777888888888777 3334 55566666677889
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.++++.|..+++++.+..|.+..+|..|+.+|...|++++|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999988763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.011 Score=60.51 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=105.8
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
...+++..|+....++++. .|+. .|..++.++ .+.|..++|..+++.....+ ..|..+...+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567788888888887775 2443 355555555 47788888887777665444 3377788888888888888888
Q ss_pred HHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc----------ChHH
Q 010642 84 ACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG----------ALEF 151 (505)
Q Consensus 84 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~----------~~~~ 151 (505)
|..++++... |+..-...+..+|++.+.+.+-.+.=-++-+ .++-+.+.|-++++...+.- -..-
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK---~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK---NFPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 8888888765 4555555666677777766553333222222 23335566666665554321 1234
Q ss_pred HHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 152 GEKIHRYISEHGYGS-KMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 152 a~~i~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
|....+.+++.+-+. +..=.-.........|++++|..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555666666543111 1111122233344566677776666
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0012 Score=68.09 Aligned_cols=173 Identities=9% Similarity=-0.035 Sum_probs=108.9
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.|...+.+.. ..+...||+|.-. ...|.+.-|...|-+-.... +....+|..+.-.|.+..+++.|...|...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555433 3566777776655 45566666666665554432 22456777777777888899999999988874
Q ss_pred hcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCchhHH----------HHHH
Q 010642 263 DFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPDSTIWRTLLGACRIHKHVTLG----------ERVI 325 (505)
Q Consensus 263 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a----------~~~~ 325 (505)
-.+.+...|-.........|+.-++..+|..- |--|+..-|-........+|+.++- .-.+
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 23334556655555556678888888887662 4445555555444445556555443 3344
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++.....|+...+|...+....+.+.+++|.....+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4445555777778888888888888887777766654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=62.00 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.....+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++...+..|.++..+..+...|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556666777778888888777776 3334 456777777777788888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00061 Score=59.66 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=146.4
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
++-+.-.|.+..++..-..... .+-+...-..+-++|...|.+.... ..+.... .|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcc
Confidence 4455566777777666555433 2244555555666776666544322 2222222 333333333333333334
Q ss_pred CHHHHH-HHHhcCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 183 SLGMAF-EVFKGMPEK----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 183 ~~~~A~-~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+.++-. ++.+.+..+ +......-...|...|++++|++...... +......=+..+.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 333334322 22222333456788888999888877621 2222222234456677888888888
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHh----cCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGR----AGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
+.|.+- .+..+.+.|..++.+ .+.+.+|.-+|++| ...|+..+.+-...++...|++++|..+++.++..
T Consensus 161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888752 244555555555543 46788888889888 47788888888888888889999999999998888
Q ss_pred cCCCCchHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010642 332 KAQESGDYVLLLNLYSSVGDWEKV-KELREFMN 363 (505)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 363 (505)
++.++.+...++-.-...|+-.++ .+...+++
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 888888888777777777765443 34444444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.9e-06 Score=48.99 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0012 Score=62.96 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFT-GVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVD 278 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 278 (505)
.+-.....+...|++++|+..++.+... .||...|. .....+...++.++|.+.++.+... .|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 3333444455677777777777777663 44544443 4455677777788887777777652 344 445556677
Q ss_pred HHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 279 LLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+|.+.|++.+|...++.. ..+-|+..|..|..+|...|+..++.....+... ..|+|+.|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~-----------------~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA-----------------LAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----------------hCCCHHHHH
Confidence 777778888777777776 3334667777777888888877777776666532 445666666
Q ss_pred HHHHHHHhC
Q 010642 357 ELREFMNEK 365 (505)
Q Consensus 357 ~~~~~m~~~ 365 (505)
..+....+.
T Consensus 446 ~~l~~A~~~ 454 (484)
T COG4783 446 IFLMRASQQ 454 (484)
T ss_pred HHHHHHHHh
Confidence 666555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.6e-06 Score=49.78 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD 133 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 133 (505)
.+||++|.+|++.|++++|.++|++|.+ .|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~--~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE--RGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCCC
Confidence 3689999999999999999999999988 8888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.6e-05 Score=60.40 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=83.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
....-.+.-.+...|++++|.++|+.. -+.| +..-|..|..++...|++++|+..+.....++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455666678899999999999988 5556 46678888888999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 010642 348 SVGDWEKVKELREFMNEK 365 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~ 365 (505)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=57.17 Aligned_cols=101 Identities=9% Similarity=0.027 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
.....+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34555666677778888888888877652 2345667777778888888888888888776 3444 456677777788
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
...|+++.|...++...+..|.+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888876644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00066 Score=56.05 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCC
Q 010642 109 NQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMYSKCGS 183 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~l~~~y~~~g~ 183 (505)
.++...+...++.+... .+.+ ....-.+...+...|++++|...|+.+......+. ......|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55555555555555441 1111 12222233444555555555555555555431111 1223334455555555
Q ss_pred HHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 184 LGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 184 ~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
+++|...++....+ ....+......|.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555444322 122333444455555555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.7e-05 Score=46.92 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP 131 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 131 (505)
.+||.+|.+|++.|+++.|.++|+.|++ .|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~--~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE--QGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 5677777777777777777777777777 67766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.006 Score=53.26 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=59.7
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..|++++|+++++.+.. . -+.|.+++.--+.+.-..|.--+|.+-+....+. +..|...|.-|.+.|...|++++|
T Consensus 98 a~~~~~~A~e~y~~lL~--d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLE--D-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HhhchhhHHHHHHHHhc--c-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 35556666666666555 2 2444455554444444444444444444444443 355666666666666666666666
Q ss_pred HHHHhcCC--CC-ChhHHHHHHHHHHhCC---ChHHHHHHHHHHHH
Q 010642 188 FEVFKGMP--EK-DVVSWSAMISGLAMNG---HGRDAIESFGAMQR 227 (505)
Q Consensus 188 ~~~~~~m~--~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 227 (505)
.-.++++. +| ++..+..+...+.-.| +.+-|.++|.+..+
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666553 33 3333344444333322 34456666666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=45.34 Aligned_cols=31 Identities=32% Similarity=0.639 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677778888888888888888887777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00058 Score=56.37 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=58.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 320 (505)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555666655321111 1122223345555666666666666655 212322 123334455666666666
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
|...++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 11222334555667777777777777776654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00025 Score=53.10 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...++++.|.+.++...+..|.+...+..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 33443 3566777777888888888988888888888877778888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 010642 351 DWEKVKELREFMNE 364 (505)
Q Consensus 351 ~~~~a~~~~~~m~~ 364 (505)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99888888877654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0021 Score=55.97 Aligned_cols=182 Identities=10% Similarity=0.099 Sum_probs=121.2
Q ss_pred cCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCH
Q 010642 181 CGSLGMAFEVFKGMPE--------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV-LSACSHCGLV 250 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~ 250 (505)
..+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3567777777776642 122 23445555666778888888888887765 2 444322221 1123446788
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
++|+++++.+.++ .+.|..++-.-+-..-..|+.-+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888864 3445566666666666677777777766665 45557888888888888888888888888888
Q ss_pred HHhcCCCCchHHHHHHHHHhCC---CHHHHHHHHHHHHhCC
Q 010642 329 IELKAQESGDYVLLLNLYSSVG---DWEKVKELREFMNEKG 366 (505)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~ 366 (505)
.-..|.++..+..+...+.-.| +.+-+.++|.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8888888777777777765554 4556677776666544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00046 Score=54.62 Aligned_cols=98 Identities=8% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGAC 312 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 312 (505)
.+...+...|++++|...|..+...+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543211101 0123333444555555555555555544 11222 23344444555
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|+.+.|...++++.+..|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.3e-05 Score=55.92 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GVKP---DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
.|+++.|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 2222 344555566777777777777777777 555555555555667777777777777777
Q ss_pred HHH
Q 010642 359 REF 361 (505)
Q Consensus 359 ~~~ 361 (505)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.051 Score=52.80 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
+|-..+..--+..-...|..+|.+..+.+..+ +.+..++++..++ .++.+-|.++|+.-.+.+|.. +.--...++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHH
Confidence 45556666666666777888888888877777 5556666666554 467778888888777654433 3344567777
Q ss_pred HHhcCChHHHHHHHHHC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC----CCchHHHHHHHHHhCC
Q 010642 280 LGRAGLLDQAYQLITSM---GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ----ESGDYVLLLNLYSSVG 350 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g 350 (505)
+...|+-..|..+|++. ++.|| ...|..+|.--..-|+...+.++-++....-|. ....-..+++.|.-.+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 77788888888888877 23443 457888888777888888887777776554431 1123445566666665
Q ss_pred CHHHHHHHHH
Q 010642 351 DWEKVKELRE 360 (505)
Q Consensus 351 ~~~~a~~~~~ 360 (505)
.+..-..-++
T Consensus 525 ~~~c~~~elk 534 (656)
T KOG1914|consen 525 LYPCSLDELK 534 (656)
T ss_pred cccccHHHHH
Confidence 5544433333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=53.98 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=80.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLL 342 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 342 (505)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667788899999999999999988 33343 3466678889999999999999999999988764 4568889
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 343 LNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=49.47 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC-CHHHHHHHHHHHHh
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG-DWEKVKELREFMNE 364 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 364 (505)
++.+|..+...+...|++++|+..|++.++.+|.++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999999999999999999 79999999988764
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.4e-05 Score=43.28 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
++||+||++|++.|++++|.++|++|.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 3577777777777777777777777766
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0026 Score=58.86 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA-CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344433333 33357777899999999985 4456778899999
Q ss_pred HHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 279 LLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 323333 499999999999999999999999999887763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.043 Score=56.45 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=64.4
Q ss_pred hCCCHHHHHHHHhcCCCC-ChhHHHHHHHH--HHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHH
Q 010642 77 TFEKSFEACKLFDEIPQR-DTVAWNVLISC--YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGE 153 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 153 (505)
..+++..|.+-.+.+..+ .-..|...+.+ ..+.|+.++|..+++.... .+.. |..|...+-..|...++.+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~--~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG--LKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc--CCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 345556666555555431 11223333333 3456666666666665533 2222 5566666666666666666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH----HHHHHHhcCCCCChhHHH
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLG----MAFEVFKGMPEKDVVSWS 203 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~----~A~~~~~~m~~~~~~~~~ 203 (505)
.+|+++.+.. |+......+..+|.|-+++. .|.++++..++.--.-|+
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 6666666542 33555555666666665543 355555555444444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00085 Score=50.07 Aligned_cols=91 Identities=16% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMY 178 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y 178 (505)
|..+...+...|++++|+..|++..+ . .+.+...+..+...+...++++.|.+.+....+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 44455555556666666666665544 1 12222444445555555555666666555555543 22334444455555
Q ss_pred HhcCCHHHHHHHHhc
Q 010642 179 SKCGSLGMAFEVFKG 193 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~ 193 (505)
...|++++|...|..
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0031 Score=60.90 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC-cCCcchHHHHHHHHHhcCChHHHHHHHHHC---CCCCCHH
Q 010642 228 AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI-LPNIHHYGCVVDLLGRAGLLDQAYQLITSM---GVKPDST 303 (505)
Q Consensus 228 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 303 (505)
.+.+.+...+..++..+....+++.+..++.+.+..... ..-..+..++|+.|.+.|..++++++++.= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345557788888999999999999999999888764211 123455679999999999999999999875 9999999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHhC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSSV 349 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 349 (505)
+++.|+..+.+.|++..|.+++..|...+ .+++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999877665 66677777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00096 Score=64.07 Aligned_cols=104 Identities=11% Similarity=-0.038 Sum_probs=83.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH 317 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 317 (505)
-.......|++++|+..|++.++. .+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567789999999999999863 3345667888888999999999999999988 5566 46678888889999999
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
+++|...+++++++.|.++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999887665554333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=54.99 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
+..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|...+++..+..|.+...+..+..+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444455555555555555544 11121 2355555666666666666666666666666666666666666666
Q ss_pred hCCC
Q 010642 348 SVGD 351 (505)
Q Consensus 348 ~~g~ 351 (505)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 5554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00052 Score=47.65 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+...+...|++++|...++.+++..|.++..+..+..++...|++++|...+++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777888888888888887777777777888888888888888887777754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0039 Score=53.39 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHh-----ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH
Q 010642 129 CKPDDVTCLLVLQACAH-----LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWS 203 (505)
Q Consensus 129 ~~pd~~t~~~ll~~~~~-----~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 203 (505)
-..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ----------- 109 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ----------- 109 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------
Confidence 34566777777777754 46778888888999999999999999999998765 3322 111111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
++-.- -..+-+-|++++++|...|+.||..|+..+++.+++.+..
T Consensus 110 ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 110 AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 11111 1234567899999999999999999999999999776643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0053 Score=57.30 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=109.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH---H-----
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS--ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC---V----- 276 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---l----- 276 (505)
.++...|++++|.+.--..++.... + .+...+. ++-..++.+.|...|++.+. ..|+...--. +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 4566788888888876666553211 1 2222222 34456788888888887763 3454322111 1
Q ss_pred -----HHHHHhcCChHHHHHHHHHC-CCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 277 -----VDLLGRAGLLDQAYQLITSM-GVKP-----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 277 -----i~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.++..++++.-...|..-.++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12345789999999999887 5444 455666666778899999999999999999998777788888889
Q ss_pred HHhCCCHHHHHHHHHHHHhCCC
Q 010642 346 YSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 346 ~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
+...++|++|.+-+++..+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999998876543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=60.98 Aligned_cols=103 Identities=8% Similarity=-0.029 Sum_probs=82.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
....+...|++++|++.|++..+.... +...|..+..++...|++++|+..++++... .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999985332 5567888888999999999999999999863 2335678888999999999
Q ss_pred ChHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010642 285 LLDQAYQLITSM-GVKPDSTIWRTLLG 310 (505)
Q Consensus 285 ~~~~A~~~~~~~-~~~p~~~~~~~ll~ 310 (505)
++++|...|++. .+.|+......++.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999998 66676555544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.002 Score=54.68 Aligned_cols=93 Identities=13% Similarity=-0.073 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
...|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...+++..+..|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888888776 33332 3467778888888899999999999988888877777777777
Q ss_pred HHH-------hCCCHHHHHHHHHHH
Q 010642 345 LYS-------SVGDWEKVKELREFM 362 (505)
Q Consensus 345 ~~~-------~~g~~~~a~~~~~~m 362 (505)
.|. ..|+++.|...+++-
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777 788888776666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=52.74 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-C-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-D-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
....+..+...+...|++++|+..|++... ....+ + ...+..+...+...|++++|...+.++.+.. +.+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 344566666667777777777777776654 22111 1 3456666666777777777777777776653 33455566
Q ss_pred HHHHHHHhcCCHHHHH
Q 010642 173 SLIAMYSKCGSLGMAF 188 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~ 188 (505)
.+..+|...|+...+.
T Consensus 111 ~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 111 NIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHcCChHhHh
Confidence 6666666666654443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.13 Score=48.31 Aligned_cols=101 Identities=17% Similarity=0.127 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.-+...|+...|.++-.+..-|+..-|-..+.+|+..++|++-.++-.. .- .++-|-.++.+|.+.|...+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHH
Confidence 3334445555555555555555555555555555555555544433221 01 22444455555555555555555
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 293 (505)
+...+. +..-+.+|.++|++.+|.+.-
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 444321 123444555555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=47.41 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCC-CCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHHHcCCCCch
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGC-KPDDVTCLLVLQACAHLG--------ALEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~pd~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~~~~~~~ 168 (505)
+-...|..+...+++.....+|+.+++ .|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR--N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR--NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh--cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 344566667777999999999999999 899 899999999999887654 244567889999999999999
Q ss_pred hHHHHHHHHHHh
Q 010642 169 NLCNSLIAMYSK 180 (505)
Q Consensus 169 ~~~~~l~~~y~~ 180 (505)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0053 Score=56.82 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH-HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA-CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~-~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
+|..++...-+.+..+.|..+|.+.++ .+ ..+...|...... +...++.+.|.+||+...+. ++.+...+...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--DK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 566666666666666666666666654 21 1122223322222 22245555567777766665 4556666666666
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPEK------DVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777777665431 223566666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0005 Score=50.65 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHH
Q 010642 212 NGHGRDAIESFGAMQRAGVF-PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 289 (505)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46666777777776654321 23334444566666677777777766662 1122 223333445666666666666
Q ss_pred HHHHHH
Q 010642 290 YQLITS 295 (505)
Q Consensus 290 ~~~~~~ 295 (505)
.+.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=61.31 Aligned_cols=120 Identities=11% Similarity=0.042 Sum_probs=96.0
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH
Q 010642 60 GYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R-----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD 133 (505)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~ 133 (505)
+.+.+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.+++.=.. .|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCCh
Confidence 3355666667777777777788888888776653 1 233456999999999999999999998888 8999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 134 VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
+|++.++..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988887667777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0054 Score=50.08 Aligned_cols=94 Identities=10% Similarity=-0.036 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
+......+...+...|++++|..+|+.+.. +.|.. .-|..|..++-..|++++|...|..+.... +.|+..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 333344444445555555555555555543 23322 233344444445555555555555555544 344445555
Q ss_pred HHHHHHhcCCHHHHHHHHhc
Q 010642 174 LIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~ 193 (505)
+..+|.+.|+.+.|++.|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=59.28 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|..+.-.....|++++|...++++.++.| +...|..+...|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344555554444555666677777776666666 3456666666666677777776666665443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0074 Score=56.08 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=20.9
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 80 KSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
++++|...|++ ....|-..+++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHH
Confidence 56666665543 4566777777777777776663
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.015 Score=54.06 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=102.3
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEH----GYGSK-MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
.....|-..+++++|...|....+. +-+.+ ...|.....+|.+. ++++|...| ...+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~-----------~~A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY-----------EKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH-----------HHHHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH-----------HHHHHHHHhc
Confidence 3344555666777776666655432 10000 11222223333222 444444433 3344556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC-GLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 287 (505)
|++..|-..+.. +...|... |++++|.+.|++...-+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666665554444 44566666 7888888888877654322221 234566677788889999
Q ss_pred HHHHHHHHC---CC-----CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHh--CCC
Q 010642 288 QAYQLITSM---GV-----KPDST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-----DYVLLLNLYSS--VGD 351 (505)
Q Consensus 288 ~A~~~~~~~---~~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~ 351 (505)
+|.++|++. .. +.+.. .+-..+-.+...||...|.+.+++.....|.-.. ....|+.+|-. ...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999988876 11 11222 2222333555678888999999988887753222 33356666632 234
Q ss_pred HHHHHHHHHH
Q 010642 352 WEKVKELREF 361 (505)
Q Consensus 352 ~~~a~~~~~~ 361 (505)
++++..-|+.
T Consensus 253 f~~av~~~d~ 262 (282)
T PF14938_consen 253 FTEAVAEYDS 262 (282)
T ss_dssp HHHHCHHHTT
T ss_pred HHHHHHHHcc
Confidence 5555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00051 Score=48.20 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=44.0
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...++++.+..|.+...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788889999999988888888888888999999999999998888876654
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.15 Score=51.08 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=139.1
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHH-hCCC--------CChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChh
Q 010642 27 PTNPFACSFAIKCCMKFCSLMGGLQIHARVLR-DGYQ--------LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTV 97 (505)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 97 (505)
.|.+..|..+.......-.++.|.+.|-+.-. .|++ .+.....+=+.+| -|++++|++++-.+..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 46677788777766666666666665543321 1110 1111112222222 48899999999888777643
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
|..+.+.|+|-...++++.-- +-..| ...|..+...++....+++|.+.+.+-.. ....
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 667788888888888876431 11112 35677888888888888888888765322 1235
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 254 (505)
+.+|.+...+++-+.+-..+++. .....-|...+.+.|.-++|.+.|-+-- .| ...+.+|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHH
Confidence 66666666676666666666543 3344556677777777777777654321 12 23455666677776666
Q ss_pred HHHHHHhhhcCCcCCcchH--------------HHHHHHHHhcCChHHHHHHHHHC
Q 010642 255 MFLDRMSKDFGILPNIHHY--------------GCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
++-++..- |.+.+. .--|..+.++|+.-+|-+++.+|
T Consensus 899 elaq~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 899 ELAQRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred HHHHhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 65443321 111111 12345566777777777777777
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0062 Score=51.68 Aligned_cols=81 Identities=9% Similarity=-0.095 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC--CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP--DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
...|..+...+...|++++|+..|++... ....| ...++..+...+...|++++|...+..+.+.. +.....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 34556666666667777777777776654 21111 12355666666666677777777766666542 333344444
Q ss_pred HHHHHH
Q 010642 174 LIAMYS 179 (505)
Q Consensus 174 l~~~y~ 179 (505)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0035 Score=47.50 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHhhhcCCcCCcchH
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGV-FPDDQTFTGVLSACSHCG--------LVDEGMMFLDRMSKDFGILPNIHHY 273 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 273 (505)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+...+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4455566667999999999999999999 899999999998876643 234556677777775 788888888
Q ss_pred HHHHHHHHh
Q 010642 274 GCVVDLLGR 282 (505)
Q Consensus 274 ~~li~~~~~ 282 (505)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 887776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=59.31 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchh
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVT 319 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 319 (505)
-..+.+++++|+..|.+.++ +.| |...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 35677999999999999985 344 5566666778899999999998888777 66775 458999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCch
Q 010642 320 LGERVIEHLIELKAQESGD 338 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~ 338 (505)
+|++.|++.++++|.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 9999999999999998743
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.14 Score=46.24 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH-HH---HHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDV-TC---LLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~-t~---~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
+...+-.....+.+.|++++|.+.|+++.. ..|+.. +- -.+..++-+.++++.|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344444455556667777777777777755 233321 11 23445566677777777777776665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.051 Score=49.06 Aligned_cols=173 Identities=7% Similarity=-0.000 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCh---hH---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPEKDV---VS---WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH- 246 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 246 (505)
....+.+.|++++|.+.|+.+....+ .. .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445566777777777776653211 11 123445667777777777777777664222112233333333221
Q ss_pred -c---------------CC---HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHH
Q 010642 247 -C---------------GL---VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRT 307 (505)
Q Consensus 247 -~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 307 (505)
. .+ ...|...|+.+++. |-...-..+|...+..+.-..-..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 1 01 12344444444443 2222233444443333310000011 13
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..-|.+.|.+.-|..-++.+++.-|..+. ....++.+|.+.|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345578889999999999999998876654 56678899999999999998876654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0073 Score=54.44 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=85.5
Q ss_pred cCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH---hcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 267 LPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR---IHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 267 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
+-|...|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447889999999999999999999999988 3333 4555555555543 3345678999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKGLQTTP 371 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 371 (505)
|...+...|++.+|...|+.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.002 Score=44.67 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++.+..|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888888 55564 55778888888899999999999999988888763
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.059 Score=44.95 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHH
Q 010642 129 CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KDVVSWS 203 (505)
Q Consensus 129 ~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~ 203 (505)
..|+...-..+..+..+.|+..+|...|++...--+..|....-.+.++....++...|...++.+-+ +.+.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555556666666666666666666666555555666666666666666666666666655432 1223333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+...|...|++.+|..-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 444555666666666666666555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.023 Score=57.28 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD 301 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 301 (505)
..|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|.+.+++. .+.|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4454444444455666666666666654 2355566666666666667777766666665 34444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.052 Score=47.84 Aligned_cols=128 Identities=10% Similarity=0.068 Sum_probs=83.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch-----hHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM-----NLCNS 173 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-----~~~~~ 173 (505)
-+.++..+.-.+.+.-.+.++.+..+ ..-+-++.....+.+...+.|+.+.|...|+...+..-..+. .+...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~--~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK--YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH--hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666667777777777777776 444556666777777777888888888888776654323333 33333
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
....|.-.+++..|...|++++. .|++.-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456666777778777777664 34455555444555567777888888887764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0036 Score=58.30 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHh---hhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-------CC-CCCHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMS---KDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GV-KPDST 303 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 303 (505)
.|..|...|.-.|+++.|+...+.-. +.+|... ....+..|..++.-.|+++.|.+.++.. |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666788888887665422 2334333 2346677778888888999888887765 22 22345
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHh----c--CCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIEL----K--AQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+..+|.+.|....+++.|+.++.+-+.+ + .....++.+|.++|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667888888888899998888774432 2 2334578889999999999998887776554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0048 Score=55.33 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCC
Q 010642 207 SGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGL 285 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 285 (505)
.-+.+.+++.+|+..|.+.++... -|.+-|..-..+|++.|.++.|++--+..+. +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 446788999999999999998532 2567777888899999999999998887764 4454 5688999999999999
Q ss_pred hHHHHHHHHHC-CCCCCHHHHHHHHH
Q 010642 286 LDQAYQLITSM-GVKPDSTIWRTLLG 310 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p~~~~~~~ll~ 310 (505)
+++|.+.|++. .+.|+-.+|..=+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999988 88898777655443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.064 Score=50.87 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPEK-------DVVSWSAMISGLAM---NGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
-.++-.|....+++...++++.+... ....--....++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888888888888877643 11122233445556 788888888888866666667777777666
Q ss_pred HHH
Q 010642 242 SAC 244 (505)
Q Consensus 242 ~~~ 244 (505)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=45.86 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=42.6
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC---chhHHHHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGS---KMNLCNSLIAM 177 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~---~~~~~~~l~~~ 177 (505)
..++-..|+.++|+.+|++... .|...+ ...+..+.+.+...|++++|..+++...... |. +..+...+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~--~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALA--AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 4445556666666666666655 444333 2234445555556666666666666555431 11 11222222334
Q ss_pred HHhcCCHHHHHHHHh
Q 010642 178 YSKCGSLGMAFEVFK 192 (505)
Q Consensus 178 y~~~g~~~~A~~~~~ 192 (505)
+...|+.++|.+.+-
T Consensus 85 L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 85 LYNLGRPKEALEWLL 99 (120)
T ss_pred HHHCCCHHHHHHHHH
Confidence 444455555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.01 Score=48.93 Aligned_cols=114 Identities=13% Similarity=0.182 Sum_probs=72.9
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcC--CcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHH
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILP--NIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 321 (505)
....++.+.+...+.++..-+.-++ +... ..-.......++.+ -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777776432221 1111 01111222223222 133556677788899999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCC
Q 010642 322 ERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN-----EKGLQTTP 371 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 371 (505)
...++.+...+|.+...|..++.+|...|+..+|.++|+++. +.|+.|.+
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999999874 45887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.28 Score=45.96 Aligned_cols=276 Identities=10% Similarity=0.010 Sum_probs=181.7
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCChhHH--HHHHHHHHhCCCHH
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCM--KFCSLMGGLQIHARVLRDGYQLDSQLM--TTLMDLYSTFEKSF 82 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~ 82 (505)
-.|+-..|..+-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+.|+.. |..... ..|.----+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 357777787777665532 4456677777777654 459999999999999742 222211 12222223578888
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH--HHHHHHHHHh---ccChHHHHH
Q 010642 83 EACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT--CLLVLQACAH---LGALEFGEK 154 (505)
Q Consensus 83 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t--~~~ll~~~~~---~~~~~~a~~ 154 (505)
.|+..-+..-+ | -...+.+.+...+..|+|+.|+++.+.-+.. .-+.+|..- -..|+.+-+. ..+...|..
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88887776644 2 3467889999999999999999999887663 345666532 2233333221 234566666
Q ss_pred HHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCC
Q 010642 155 IHRYISEHGYGSKMN-LCNSLIAMYSKCGSLGMAFEVFKGMPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGV 230 (505)
Q Consensus 155 i~~~~~~~~~~~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~ 230 (505)
.-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+ |.+..+. +-.+.+.|+ .+++-++.... ..+
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhc
Confidence 66666654 44432 233446789999999999999998864 4444333 223344454 44444444432 225
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh-cCChHHHHHHHHHC
Q 010642 231 FPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR-AGLLDQAYQLITSM 296 (505)
Q Consensus 231 ~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 296 (505)
+||. .....+..+-...|++..|..--+... ...|....|..|.+.-.- .|+-.++..++-+.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5554 566777888888999988887666665 457888888888887654 49999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0024 Score=45.42 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..+...++++.|.++++++.+.+|.++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888999999999988888888888888889999999999998888887554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.24 Score=46.75 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=97.9
Q ss_pred CCHHHHHHHHH-HHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH--------
Q 010642 131 PDDVTCLLVLQ-ACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS-------- 201 (505)
Q Consensus 131 pd~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~-------- 201 (505)
|...++-.+-. .+...++.++|.++-..+.+.. +.+......=..++.-.++.+.|..-|++...-|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 44455554433 3466788888888777777654 2222222222233445677888888888776433321
Q ss_pred -------HHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-c
Q 010642 202 -------WSAMISGLAMNGHGRDAIESFGAMQRA---GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-I 270 (505)
Q Consensus 202 -------~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 270 (505)
|.-=.+-..++|++..|.+.|.+.+.. ++.|+...|........+.|+.++|+.--+...+ +.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHH
Confidence 222233456788888999988888753 3556666677777778888888888877666653 2222 1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
..|..-..++.-.+++++|.+-+++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223445567788888888776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.17 Score=50.36 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHHHHHHHccCCcHHHH--HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCC
Q 010642 33 CSFAIKCCMKFCSLMGGL--QIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQ 110 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 110 (505)
++..=.+|.+.++..--+ .-++++.+.|-.|+.... ...++-.|.+.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cC
Confidence 333445555555544322 223445556655655432 3345556778888777654 44
Q ss_pred ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 010642 111 RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
....|+++|..|+. --...-+...|..++-+.+.+.-.+. .-+..--.+...++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRM------------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI 725 (1081)
T ss_pred chhhHHHHHHHHHH------------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh
Confidence 55556666555533 01122233334433333322211110 00111112334555566666666554
Q ss_pred HhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc
Q 010642 191 FKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI 270 (505)
Q Consensus 191 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 270 (505)
. ..+|-.+-++++-+++-. .+..+...+...+-+...+..|-++|..|-.
T Consensus 726 ~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-------- 775 (1081)
T KOG1538|consen 726 C------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD-------- 775 (1081)
T ss_pred h------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc--------
Confidence 2 223333444444333322 1334444444455555666666677766643
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD 301 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 301 (505)
...++++....+++++|..+-++. ...||
T Consensus 776 --~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 776 --LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred --HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 134666677777777777777666 33444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.012 Score=46.28 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=46.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCC
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTN--PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ--LDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 80 (505)
+-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....-+. .+..+...+.-.+...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3345666677777776666664433 234555556666666666666666666554211 011222222233445566
Q ss_pred HHHHHHHHhcCC
Q 010642 81 SFEACKLFDEIP 92 (505)
Q Consensus 81 ~~~A~~~~~~~~ 92 (505)
.++|.+.+-...
T Consensus 91 ~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.089 Score=43.92 Aligned_cols=126 Identities=16% Similarity=0.038 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHchhc-cCCCCCCHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ----RDTVAWNVLISCYIRNQRTRDALCLFDNLNRE-ESGCKPDDVTC 136 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~pd~~t~ 136 (505)
.|++.-.-.|.....+.|+..+|...|++... .|....-.+..+....+++..|..+++++-+- ..+-.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 46666666777778888888888888877654 46666777777777788888888888777541 011223 344
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
..+.+.+...|....|+.-|+.+... -|+...-.-...++.+.|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55667778888888888888888876 344444444556677778776665443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0077 Score=56.18 Aligned_cols=257 Identities=13% Similarity=0.022 Sum_probs=155.8
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCcHHHHHHHHHHH--H--hCCC-CChhHHHHHHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNP----FACSFAIKCCMKFCSLMGGLQIHARVL--R--DGYQ-LDSQLMTTLMDLY 75 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~li~~~ 75 (505)
+++.|+.+..+.+|+..++.|.. |. ..|..+..+|.-.++++.|++.|..=+ . .|-+ -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 57899999999999999998854 43 346666778888899999998876422 1 1110 1122333444555
Q ss_pred HhCCCHHHHHHHHhcCCC---------CChhHHHHHHHHHHHCCCh--------------------hHHHHHHHHchhcc
Q 010642 76 STFEKSFEACKLFDEIPQ---------RDTVAWNVLISCYIRNQRT--------------------RDALCLFDNLNREE 126 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~ 126 (505)
--.|.+++|...-.+-.. ....++..+...|...|+. +.|.++|.+-.+..
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556777776654332211 1234566677777665542 22333333221100
Q ss_pred --CCC-CCCHHHHHHHHHHHHhccChHHHHHHHHHHHH----cCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---
Q 010642 127 --SGC-KPDDVTCLLVLQACAHLGALEFGEKIHRYISE----HGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP--- 195 (505)
Q Consensus 127 --~~~-~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~--- 195 (505)
.|- -.-...|..+.+.|--.|+++.|...|+.-+. .|- ......+..|.++|.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 000 01112344455555556788988887765432 231 1234567788899999999999998887542
Q ss_pred ----CCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 196 ----EKDV--VSWSAMISGLAMNGHGRDAIESFGAMQR----A-GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 196 ----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.+.+ .+.-+|.++|.-...+++|+.++.+-.. . ...-....+.+|..++...|..++|..+.+...+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3332 3455677778777888888887765331 1 1122346788888899999999998877665544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0089 Score=51.27 Aligned_cols=95 Identities=18% Similarity=0.345 Sum_probs=60.8
Q ss_pred HHHhcC--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-------------
Q 010642 189 EVFKGM--PEKDVVSWSAMISGLAMN-----GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG------------- 248 (505)
Q Consensus 189 ~~~~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------- 248 (505)
..|+.. ..++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 456677777777777643 566667777888888999999999999998765421
Q ss_pred ---CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 249 ---LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 249 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
+-+-|++++++|... |+-||..++..+++.+++.+
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 224455555555543 55555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.2 Score=50.26 Aligned_cols=250 Identities=12% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHH-------HHHHHhccChHHHH
Q 010642 81 SFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLV-------LQACAHLGALEFGE 153 (505)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~l-------l~~~~~~~~~~~a~ 153 (505)
+++|.+..+.- |.+..|..|.......-.++.|...|-+...- .|++.-.. +..+ ...-+--|.+++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhh
Confidence 55555555532 45567777777766666777777777665331 23321100 0011 11112346778888
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 154 KIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 154 ~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+++-.+-+.+ ..+.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.|..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 7776665543 3466777888888888877754322 234688888888877778888877765331
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHH
Q 010642 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTL 308 (505)
Q Consensus 229 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 308 (505)
....+.++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-+. | .+.
T Consensus 825 --------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaA 884 (1189)
T KOG2041|consen 825 --------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAA 884 (1189)
T ss_pred --------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHH
Confidence 123455666666665544444433 33556666788888888888888887776642 2 234
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCC-----------CCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQ-----------ESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+..|....++.+|.++.++..-.... ......--|..+.++|+.-+|.+++.+|.+
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 56677777777777666542110000 001123346677888888888888888754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=53.62 Aligned_cols=84 Identities=12% Similarity=-0.004 Sum_probs=41.9
Q ss_pred HhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhCCCH
Q 010642 281 GRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSVGDW 352 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 352 (505)
.+.|++++|...|+.. ...|+. ..+.-+..++...|+++.|...|+.+.+..|.++ ..+..++..|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555554444 222221 2333444555555666666666666655554432 2333445555556666
Q ss_pred HHHHHHHHHHHh
Q 010642 353 EKVKELREFMNE 364 (505)
Q Consensus 353 ~~a~~~~~~m~~ 364 (505)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=48.37 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=74.9
Q ss_pred HHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
.--+...|++++|..+|+-+ -..| +..-|..|..++-..++++.|...+.....+++.++..+......|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34456789999999999887 2222 555677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 010642 355 VKELREFMNE 364 (505)
Q Consensus 355 a~~~~~~m~~ 364 (505)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0036 Score=43.75 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444432 1113333334444444444444444444444
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.28 Score=42.97 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=75.3
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch---hHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM---NLCNSLI 175 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l~ 175 (505)
+-.....+...|++.+|...|+.+...-.+-+--....-.++.++-+.|+++.|...++..++.- |.+. .++-.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHH
Confidence 33344555666667777777766655211111112334445556666666666666666665542 1111 1111111
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKD-------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 248 (505)
.++.+. .. ..+ ...+| ...+..++.-|-......+|...+..+.+. =...-..+..-|.+.|
T Consensus 87 ~~~~~~--~~---~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 87 LSYYKQ--IP---GIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHH--HH---HHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHh--Cc---cch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 111111 00 000 11111 113344444444445555554444443321 0001122445566666
Q ss_pred CHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 289 (505)
.+..|..-++.+.+++.-.+. ......++.+|.+.|..+.|
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 666666666666665322221 12334555566666655533
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0046 Score=43.37 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcC-chhHHHHHHHHHHHhcC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHK-HVTLGERVIEHLIELKA 333 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 333 (505)
...|..+...+.+.|++++|+..|++. .+.|+ ...|..+..++...| ++++|++.+++.++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445667777777888888888888776 44454 557777778888888 78888888888887765
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.48 Score=44.49 Aligned_cols=305 Identities=13% Similarity=0.030 Sum_probs=191.8
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH--hCCCHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYS--TFEKSFEACK 86 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~ 86 (505)
+..+...|..-... ..|..|-.++ +..||-..|+++-.+..+. +..|....-.|+.+-. -.|+.++|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 34455566555432 2355554444 3558888888877665432 3445555555555433 3699999999
Q ss_pred HHhcCCC-CC--hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 87 LFDEIPQ-RD--TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 87 ~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
-|+.|.. |. ..-...|.-.--+.|..+.|.+.-...-. .-|. .......+...+..|+++.|.++.+.-.+.
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~----~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE----KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh----hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999986 22 12233344445678999999888877743 4454 467788899999999999999999877654
Q ss_pred C-CCCchhH--HHHHHHHHH---hcCCHHHHHHHHhcCC--CCChhHH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 010642 163 G-YGSKMNL--CNSLIAMYS---KCGSLGMAFEVFKGMP--EKDVVSW-SAMISGLAMNGHGRDAIESFGAMQRAGVFPD 233 (505)
Q Consensus 163 ~-~~~~~~~--~~~l~~~y~---~~g~~~~A~~~~~~m~--~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 233 (505)
. +.++..- -..|+.+-. -..+...|...-.+.. .||.+.- -.-..++.+.|+..++-.+++.+=+....|+
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 3 2333321 222332221 1224555555444332 4555433 2334678999999999999999988766666
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 311 (505)
.. .+....+.|+.. ..-+++..+--.++|| ..+-..+..+-...|++..|..--+.. ...|....|..|...
T Consensus 298 ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdI 371 (531)
T COG3898 298 IA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADI 371 (531)
T ss_pred HH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHH
Confidence 42 333445666542 2223333222234454 556667778888899998887766665 567888888777766
Q ss_pred HH-hcCchhHHHHHHHHHHHhc
Q 010642 312 CR-IHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 312 ~~-~~g~~~~a~~~~~~~~~~~ 332 (505)
-. ..|+-.++.+.+.+..+--
T Consensus 372 eeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhhccCchHHHHHHHHHHhcCC
Confidence 54 4599999998888877643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.77 Score=46.79 Aligned_cols=336 Identities=12% Similarity=0.097 Sum_probs=172.9
Q ss_pred cchhcCCchHHHHHHHHHH--------hCCCCCChhhHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMR--------QKRIPTNPFACSF-----AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTT 70 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 70 (505)
++.+.-++++-+.+-+.++ ..|++.+..-|.. +++-+...+.+..|.|+-..+-..- .....++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQGDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccccHHHHH
Confidence 3445556666555555443 3466666555554 4555666788888888876653211 112577777
Q ss_pred HHHHHHhCC---CHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCC----CCHHHHHHHHH
Q 010642 71 LMDLYSTFE---KSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCK----PDDVTCLLVLQ 141 (505)
Q Consensus 71 li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----pd~~t~~~ll~ 141 (505)
...-+.+.. +-+.+.++=+++.. .+-++|..+.+-....|+++-|..+++.=.. .+.. .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~--~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPR--SGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCC--ccchhHHHhccchHHHHHH
Confidence 777777663 34445555556655 4667888888888899999999888765433 1111 12223455566
Q ss_pred HHHhccChHHHHHHHHHHHHc-----------CCCCchhHHHHHHH---------HHHhcCCHHHHHHHHh--cCC----
Q 010642 142 ACAHLGALEFGEKIHRYISEH-----------GYGSKMNLCNSLIA---------MYSKCGSLGMAFEVFK--GMP---- 195 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~-----------~~~~~~~~~~~l~~---------~y~~~g~~~~A~~~~~--~m~---- 195 (505)
-+...|+.+...++.-.+.+. ..|.....|.-++. .| ..++-..+...|. ...
T Consensus 555 kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~ 633 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFY-NQDDNHQALASFHLQASYAAET 633 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhh-hcccchhhhhhhhhhhhhhhhh
Confidence 677777777776666555442 11112222222211 11 1111111111111 000
Q ss_pred -CCChhHHHHHHHHHHhCCCh---HHH-------HHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 196 -EKDVVSWSAMISGLAMNGHG---RDA-------IESFGAMQ-RAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 196 -~~~~~~~~~li~~~~~~g~~---~~A-------~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
++-........+.+.+.... ++| +.+.+.+. +.|......|.+--+.-+...|+..+|.++-.+.+
T Consensus 634 ~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 634 IEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred hcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 00011112222333332221 111 11111111 11222333344444555556666666666554443
Q ss_pred cCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 264 FGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 264 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
-||-..|-.-+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+... +.-..
T Consensus 712 ---ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv 777 (829)
T KOG2280|consen 712 ---IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKV 777 (829)
T ss_pred ---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHH
Confidence 2566666666666777777777666666552 134455566667777777777666554421 11456
Q ss_pred HHHHhCCCHHHHHHHH
Q 010642 344 NLYSSVGDWEKVKELR 359 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~ 359 (505)
.+|.+.|++.+|.+.-
T Consensus 778 ~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 778 KAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhccHHHHHHHH
Confidence 6677777776666553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.076 Score=41.57 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=86.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 245566666665555566666666666664432222 24444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 290 YQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
..-+-.++ .+.......+......|+-+.-.+++..+.+.+.+++.....+..+|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444443 234455667788889999999999999988877778889999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.1 Score=45.78 Aligned_cols=306 Identities=10% Similarity=-0.014 Sum_probs=169.0
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSL---MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTF 78 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (505)
|.-++..+.+..|+.+-..+...-... ...|.....-+.+..+. +.+..+-+++ .... .+...|.....-...+
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cccC-CCceeHHHHHHHHHhc
Confidence 344566677888888777765432221 34455555555444322 2222222222 1111 3445666677666789
Q ss_pred CCHHHHHHHHhcCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC---------CCCCCHHHHHHHHH
Q 010642 79 EKSFEACKLFDEIPQR--------DTVAWNVLISCYIRNQRTRDALCLFDNLNREES---------GCKPDDVTCLLVLQ 141 (505)
Q Consensus 79 g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~~~pd~~t~~~ll~ 141 (505)
|+.+.|.++++.=+.. +..-+..-+.-....|+.+-...++..+.+... ..+.....|..+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999998765431 222344455556677777776666655544100 01111112222222
Q ss_pred ---------HHHhccChHHHHHHHHHHH-H-cCCCCchhHHHHHHHHHHhcCCHHHHH----------HHHhcCCC----
Q 010642 142 ---------ACAHLGALEFGEKIHRYIS-E-HGYGSKMNLCNSLIAMYSKCGSLGMAF----------EVFKGMPE---- 196 (505)
Q Consensus 142 ---------~~~~~~~~~~a~~i~~~~~-~-~~~~~~~~~~~~l~~~y~~~g~~~~A~----------~~~~~m~~---- 196 (505)
.|-+..+......++-+-. + ..+.+-........+.+++.....-.. ++++.+..
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~ 680 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGG 680 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222223333222222210 0 001222223344455555554422111 11222211
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHH
Q 010642 197 -KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGC 275 (505)
Q Consensus 197 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 275 (505)
-.-.+.+--+.-+...|+..+|.++-.+.+ -||-.-|..=+.+++..+++++-+++-+... .+.-|.-
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchh
Confidence 122345556667778899999988877764 4788888888889999999988776554443 2566777
Q ss_pred HHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
++..+.+.|+.++|.+++.+.+-.+ -...+|...|++.+|.+..-+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999999999883222 345667777888887766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.74 Score=43.31 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
.+.+..|.-+...|+...|.++-++..+ |+..-|..-+.+++..+++++-.++... ..+|..|...+.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 3444555556666777777777666654 5666777777777777777665554321 223466777777777777
Q ss_pred CHHHHHHHHHH
Q 010642 351 DWEKVKELREF 361 (505)
Q Consensus 351 ~~~~a~~~~~~ 361 (505)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 77777766655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.031 Score=44.41 Aligned_cols=52 Identities=10% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 229 GVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 229 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4667788888888888888888888888888888777777777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.42 Score=41.87 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=38.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~ 357 (505)
+..-|.+.|.+..|..-++.+++.-|+.+. ....|+.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345688999999999999999999887654 45678899999998885543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.064 Score=48.88 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=57.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLG 310 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 310 (505)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 43333333445666666666666665432111 0134455666666667777776666666 11222 334444555
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+...|+.+.|...++.+.+..|.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66677888888888888877777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.11 Score=46.98 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCC---ChhHHHHHHHHchhccCCCCCCHHHH
Q 010642 63 LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQ---RTRDALCLFDNLNREESGCKPDDVTC 136 (505)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~pd~~t~ 136 (505)
.|..-|-.|...|...|+.+.|...|.+..+ ++...+..+..++..+. ...++..+|+++.. .-+-|..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHHH
Confidence 3444555555555555555555555544322 34444444443333221 22344555555543 112223333
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 34444445555555555555555554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0055 Score=35.90 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHH
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+++.++.+|.++.+|..|...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.026 Score=54.27 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++..++ .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566778888888888888888888886 667764 35788888888888888888888888886322 222111
Q ss_pred H--HHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 344 N--LYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 344 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
. .+....+..+..++++...+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112233445677777777777764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.042 Score=43.63 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 311 (505)
|..++..++.++++.|+++....+++.. +|+.++...-. +. +..- +..|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc-------cCCCCCCCCCHHHHHHHHHH
Confidence 3456667777777777777766666543 34443321100 00 1111 445555555556666
Q ss_pred HHhcCchhHHHHHHHHHHHhc--CCCCchHHHHHH
Q 010642 312 CRIHKHVTLGERVIEHLIELK--AQESGDYVLLLN 344 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~ 344 (505)
|..+|++..|.++.+...+.. |-+...|..|+.
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 655566666666655555544 222334444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.45 Score=42.17 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CChh--------HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPE--KDVV--------SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
+++|...|.-..-+.+-...|+.-.. ..+. ..+.++..+.-.|.+.-...++++..+...+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 55666666555555555555543322 2222 2344555555566666677777777765555556666666
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH-----HHHHhcCChHHHHHHHHHCC-CCC-CHHHHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV-----DLLGRAGLLDQAYQLITSMG-VKP-DSTIWRTLLGACR 313 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 313 (505)
.+.-.+.|+.+.|..+|+...+. .-..+..+.+.++ ..|.-++++.+|...+.++. ..| |+...|.-.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 66677777777777777766554 2223333333333 23444566666666666651 112 2333333222333
Q ss_pred hcCchhHHHHHHHHHHHhcCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~ 334 (505)
-.|+...|.+..+.+.+..|.
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCc
Confidence 456666666666666666654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.021 Score=40.48 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=43.7
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
..|.+.+++++|.++++.+ ...|+ ...|......+...|+++.|...++...+..|.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888887777 44453 4466667777778888888888888888887765443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.015 Score=41.87 Aligned_cols=26 Identities=4% Similarity=-0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
++..+...+...|++++|++.+++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444455555555555555555444
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=36.34 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+|..+..++...|++++|+++++++++..|+++..+..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35677888899999999999999999999998887777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.36 Score=48.13 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP 92 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 92 (505)
+-+.-+++|.+.|..|+... +...|+-.|.+.+|-++|.+ .|.. |.-+.+|.....++.|.++...-.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 44555677888888888654 34567778899999988854 4533 234455555555666655554322
Q ss_pred CC-------ChhHH-------HHHHHHHHHCCChhHHHHHHHHc------hhccCCC---CCCHHHHHHHHHHHHhccCh
Q 010642 93 QR-------DTVAW-------NVLISCYIRNQRTRDALCLFDNL------NREESGC---KPDDVTCLLVLQACAHLGAL 149 (505)
Q Consensus 93 ~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~---~pd~~t~~~ll~~~~~~~~~ 149 (505)
.. ....| .+-...+...|+.++|..+.-+- .. -+- ..+..+...+..-+-+...+
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lid--I~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLID--IARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHH--HHhhcchhhhhHHHHHHHHHhhcccc
Confidence 10 00111 12233444556666655443210 00 011 12233444444444455556
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
..|.++|..|-.. ..++++....+++++|..+-++.++--...|-.-..-++...++++|.+
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk--------- 825 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK--------- 825 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH---------
Confidence 6666666554332 2466667777777777777777765332233333333344444444433
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 230 VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 230 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+|-+.|+-.+|.++++++..
T Consensus 826 -------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 -------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -------------HHHHhcchHHHHHHHHHhhh
Confidence 34445666666666666643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.57 Score=46.24 Aligned_cols=132 Identities=15% Similarity=0.047 Sum_probs=90.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCC
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQR 111 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 111 (505)
-...++.-+-+.|-.+.|+++. .|+ ..-.++..++|+++.|.++.+... +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 3566666667777777777653 232 233455678899999988887765 56789999999999999
Q ss_pred hhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010642 112 TRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 191 (505)
++-|.+.|.+... |..++-.|.-.|+.+.-.++.....+.| -+|....++.-.|+.++..+++
T Consensus 363 ~~lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988755 5666667778888888888887777766 2455555566667777777666
Q ss_pred hcC
Q 010642 192 KGM 194 (505)
Q Consensus 192 ~~m 194 (505)
.+.
T Consensus 426 ~~~ 428 (443)
T PF04053_consen 426 IET 428 (443)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.023 Score=40.91 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhc---C-C---CCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELK---A-Q---ESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+++.+...+...|++++|+..+++..+.. + . ...++..+...|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467888888999999999999999977652 2 1 134678899999999999999999987643
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=39.87 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc----hHHHHHHHHHhCCCH
Q 010642 279 LLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG----DYVLLLNLYSSVGDW 352 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 352 (505)
++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++..++..+... .|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 3333 5667888888888888888888888888887643332 466667778888888
Q ss_pred HHHHHHHHHHHhCCCC
Q 010642 353 EKVKELREFMNEKGLQ 368 (505)
Q Consensus 353 ~~a~~~~~~m~~~~~~ 368 (505)
+.|..-|+...+.|-+
T Consensus 132 d~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 132 DAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhHHHHHHhCCH
Confidence 8888888887777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.065 Score=44.13 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRM 260 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 260 (505)
++..+...|++++|..+.+.+.... +.|...+..++.++...|+..+|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444421 113334444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.8 Score=38.12 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHhc----CCCCchHHHHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-------GVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIELK----AQESGDYVLLL 343 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~ 343 (505)
....|.+..++++|-..|.+- .--|+. ..|-+.|-.+.-..++..|++.++.-.+.. +.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344566666666665554443 111222 123344444555567777777777754433 44455666777
Q ss_pred HHHHhCCCHHHHHHHH
Q 010642 344 NLYSSVGDWEKVKELR 359 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~ 359 (505)
.+| ..|+.+++..+.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 777 556777766554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.097 Score=50.47 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc----hHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH----HYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+...++.+..+|.+.|++++|+..|++..+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456888999999999999999999999875 356643 4889999999999999999999987
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.17 Score=45.29 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC----CCCCC-HHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPD-STIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll 309 (505)
.|+..+..+ +.|++..|.+-|...++.|.-.+ ....+-.|...+...|++++|...|..+ +-.|- +..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444433 34556666666666665321111 1223334555555555555555555444 22221 23333444
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
......|+.++|...|+++.+..|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44445555555555555555555444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.27 E-value=3 Score=40.21 Aligned_cols=343 Identities=11% Similarity=0.062 Sum_probs=181.9
Q ss_pred hcCCchHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCC----CCChhHH
Q 010642 7 MSSSPEEGFYLFEKMRQK--RIPT------------NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGY----QLDSQLM 68 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 68 (505)
+.+.+.+|++.|..-... +..| |-.-=+..+.++...|++.+|+.++++++..=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788888888766554 3222 111223345677889999999999998876544 3788899
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHC-------------------------------CChhHHHH
Q 010642 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRN-------------------------------QRTRDALC 117 (505)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------------------------------g~~~~A~~ 117 (505)
+.++-++++.=-++.-.. +...=..-|.-||..|.+. .+..--++
T Consensus 171 d~~vlmlsrSYfLEl~e~----~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKES----MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHHHhHHHHHHHHHh----cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 988877766422221111 1111011122333333221 11111222
Q ss_pred HHHHchhccCCCCCCHHH-HHHHHHHHHhccChHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHh
Q 010642 118 LFDNLNREESGCKPDDVT-CLLVLQACAHLGALEFGEKIHRYISEHGYGS----KMNLCNSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 192 (505)
++....+ .-+.|+-.. ...+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.
T Consensus 247 ~l~~We~--~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 247 ILENWEN--FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHh--hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2222222 334454322 2233333332 5555555555444332111 13456666677777777777777666
Q ss_pred cCC--CCChhHH-------HHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHH-HHHH---HHHHhccCC-HHHHH
Q 010642 193 GMP--EKDVVSW-------SAMISGLAM----NGHGRDAIESFGAMQRAGVFPDDQT-FTGV---LSACSHCGL-VDEGM 254 (505)
Q Consensus 193 ~m~--~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l---l~~~~~~g~-~~~a~ 254 (505)
-+. +|+...- ..+-+..+. .-+..+=+.+|.......+ |..- ...+ ..-+-+.|. -++|.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 443 3333211 122222221 1122334455555554332 2211 1111 222344455 77888
Q ss_pred HHHHHHhhhcCCcC-CcchHHHHH----HHHHhc---CChH---HHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCc
Q 010642 255 MFLDRMSKDFGILP-NIHHYGCVV----DLLGRA---GLLD---QAYQLITSMGVKPD----STIWRTLLGA--CRIHKH 317 (505)
Q Consensus 255 ~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p~----~~~~~~ll~~--~~~~g~ 317 (505)
.+++.+.+ +.| |...-|... ..|.++ ..+. +-..++++.|+.|- ...-|.|..| +..+|+
T Consensus 401 nLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqge 477 (549)
T PF07079_consen 401 NLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGE 477 (549)
T ss_pred HHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhccc
Confidence 88888875 223 333322222 122221 1122 23344455577663 3455556555 467899
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+.++.-.-..+.+..| ++.+|..+.-......++++|..++..+.
T Consensus 478 y~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 478 YHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 9999988888888888 78999999999999999999999997653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.5 Score=40.95 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=79.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCC--cC--CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCCHHHHH
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGI--LP--NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPDSTIWR 306 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~ 306 (505)
.++..++...+.++++.+.|+...+--.- .| ...++-.|...|.+..++++|.-+..+. ++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666667778887777776542111 11 3456778888888888888776555444 3332122233
Q ss_pred -----HHHHHHHhcCchhHHHHHHHHHHHhc--CCC----CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 307 -----TLLGACRIHKHVTLGERVIEHLIELK--AQE----SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 307 -----~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
.+..+++..|....|.+..++..++. ..| ......+.+.|...|+.+.|..-|+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 34467788888888888888876653 222 234457888888888888887766643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.4 Score=35.85 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCCh
Q 010642 33 CSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRT 112 (505)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 112 (505)
...++..+...+........++.+++.+ ..+....+.++..|++.+ ..+....++. ..+.......+..+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 4566677776777888888888888776 467778888888888764 3444444442 12223334456666666666
Q ss_pred hHHHHHHHHc
Q 010642 113 RDALCLFDNL 122 (505)
Q Consensus 113 ~~A~~~~~~m 122 (505)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 6666666655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.24 Score=46.76 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.++..|..++.+.+++..|++..++.++++|+|.....--..+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667778889999999999999999999999999999999999999999999999998764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.9 Score=39.94 Aligned_cols=162 Identities=14% Similarity=0.029 Sum_probs=102.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 204 AMISGLAMNGHGRDAIESFGAMQRAG---VFPDDQTFTGVLSACSH---CGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
.++-+|-...+++..+++.+.+.... +.-....-....-|+.+ .|+.++|.+++..+... .-.+++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556889999999999999998641 11111111233345566 89999999999996554 6667888888877
Q ss_pred HHHHh---------cCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCch----hHHHHHH----HHHHHhc----CCC
Q 010642 278 DLLGR---------AGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHV----TLGERVI----EHLIELK----AQE 335 (505)
Q Consensus 278 ~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~----~~a~~~~----~~~~~~~----~~~ 335 (505)
..|-. ...+++|.+.|.+. .++||...=-.+...+...|.- .+..++. ..+.+.+ ..+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 76542 23478899999887 6666654322222222233321 1222222 1122222 122
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
--.+.+++.++.-.|+.+.|.+..++|.+..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355689999999999999999999998764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.5 Score=43.96 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA-GVFPDD-----QTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
...+++...-.|+-+.+++.+.+..+. ++.-.. .+|..++..+.. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 334455555567777777776665442 222111 233344443333 45678899999999875 36655
Q ss_pred hHHHH-HHHHHhcCChHHHHHHHHHC-CCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH-H
Q 010642 272 HYGCV-VDLLGRAGLLDQAYQLITSM-GVK-----PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL-L 343 (505)
Q Consensus 272 ~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 343 (505)
.|... .+.+...|++++|.+.|++. ..+ .....+.-+.-.+....++++|...+..+.+...-+...|..+ .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 35677789999999999976 111 1233444455667888999999999999999877666666644 4
Q ss_pred HHHHhCCCH-------HHHHHHHHHHHhC
Q 010642 344 NLYSSVGDW-------EKVKELREFMNEK 365 (505)
Q Consensus 344 ~~~~~~g~~-------~~a~~~~~~m~~~ 365 (505)
..|...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455778888 8888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.46 Score=44.95 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.+++.|.-.|.+.+++.+|++.-++. ... +|.-..-.=..++...|+++.|+..|+++++..|.|..+-.-|+..-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778899999999999888877 444 4566666667889999999999999999999999998887777777766
Q ss_pred CCCHHHH-HHHHHHHHhC
Q 010642 349 VGDWEKV-KELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a-~~~~~~m~~~ 365 (505)
..+..+. .++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665544 7888888653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.5 Score=37.04 Aligned_cols=194 Identities=18% Similarity=0.075 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP-----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS- 242 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 242 (505)
.........+...+.+..+...+.... ......+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444455555555555555444432 12223344444444455555555555555554322221 11111111
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCC--cCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC--HHHHHHHHHHHHhcCc
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGI--LPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD--STIWRTLLGACRIHKH 317 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 317 (505)
.+...|+++.+...+.+.... .. ......+......+...++.+.|...+.+. ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455556666666655555321 10 011222222233344555666666666555 22222 3455555555666666
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++.|...+.......|.....+..+...+...+.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655334444555555555556666666655543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.81 Score=45.20 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 215 (505)
...+++-+.+.|..+.|.++-. |+ ..-.+...++|+++.|.++-++.. +...|..|.....+.|+.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4444555555555555554421 11 112333455666666666655544 444666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
+-|.+.|.+..+ |..|+--|.-.|+.+.-.++.+..... | -++....++.-.|+.++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666655432 333444444555555544444444332 1 133333344444555555555555
Q ss_pred CC
Q 010642 296 MG 297 (505)
Q Consensus 296 ~~ 297 (505)
.+
T Consensus 428 ~~ 429 (443)
T PF04053_consen 428 TG 429 (443)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.7 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
.++..+...+.......+++.+.+.+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555566666666666666655 35556666666666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.2 Score=38.77 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
|...-..|...|...|+.++|.+.+-.+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555556666666666555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.58 E-value=7.3 Score=42.36 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
.-.++.--+.|.+++|..++.-=.+.-...|.+...-+.+...+++|.-.|+..-+ ..-.+.+|..+|++.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33334444455555555554432222223344444444455666666665554321 122456667777777
Q ss_pred HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77777666643 11111222345666677777777777776666
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.54 Score=38.84 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=6.2
Q ss_pred HCCChhHHHHHHHHc
Q 010642 108 RNQRTRDALCLFDNL 122 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m 122 (505)
..|++++|..+|+-+
T Consensus 49 ~~Gk~~eA~~~F~~L 63 (165)
T PRK15331 49 NQGRLDEAETFFRFL 63 (165)
T ss_pred HCCCHHHHHHHHHHH
Confidence 334444444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.1 Score=36.73 Aligned_cols=204 Identities=9% Similarity=-0.005 Sum_probs=108.5
Q ss_pred CCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCC--hhHH
Q 010642 26 IPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRD--TVAW 99 (505)
Q Consensus 26 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 99 (505)
.+||-. .|.....+|....+++.|...+.+..+. ...+...|.+ ...++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456543 4555566777888899888877766532 2333333332 223455555665555422 3346
Q ss_pred HHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC-----CCchhHHHHH
Q 010642 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGY-----GSKMNLCNSL 174 (505)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~-----~~~~~~~~~l 174 (505)
+--...|...|.++.|-..+++.-+. ....+++.|.+++++....-. ..-...+..+
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 66778888888888887777766441 223344555555554433210 1112334455
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--------CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE--------KDV-VSWSAMISGLAMNGHGRDAIESFGAMQRAG---VFPDDQTFTGVLS 242 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~ 242 (505)
...+.+..++++|-..|.+-.. ++. ..|-+.|-.|.-..++..|...++.--+.+ -.-+..+...||.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5666677777776666554321 111 123444444555556666666666633321 1113345566666
Q ss_pred HHhccCCHHHHHHH
Q 010642 243 ACSHCGLVDEGMMF 256 (505)
Q Consensus 243 ~~~~~g~~~~a~~~ 256 (505)
+|- .|+.++...+
T Consensus 237 ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKV 249 (308)
T ss_pred Hhc-cCCHHHHHHH
Confidence 553 3555554443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.37 Score=43.15 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=78.4
Q ss_pred HHHHHHhcCC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 010642 186 MAFEVFKGMP--EKDVVSWSAMISGLAMN-----GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG---------- 248 (505)
Q Consensus 186 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 248 (505)
..+..|.... ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|..||..+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888888888887654 456666777889999999999999999998875532
Q ss_pred ------CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 249 ------LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 249 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
+-+=++.++++|.. +|+.||-.+-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22447889999987 49999999999999999988764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.43 E-value=6.1 Score=39.63 Aligned_cols=339 Identities=12% Similarity=0.047 Sum_probs=189.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-ccCCcHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHhCCCHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCM-KFCSLMGGLQIHARVLRD-GY-QLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A 84 (505)
-|..+.+..+|++-++ |++-+...|...+.-+. ..|+.+.....|+.+... |. -.....|...|..-..+++....
T Consensus 92 lg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 4566677777777765 34445555555554333 335666666666666543 21 12344566666666667777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHH---C------CChhHHHHHHHHchhc--cCCCCCCHHHHHHHH-------------
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIR---N------QRTRDALCLFDNLNRE--ESGCKPDDVTCLLVL------------- 140 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~--~~~~~pd~~t~~~ll------------- 140 (505)
..+++++.+-....++..-.-|.+ . ...+++.++-.....+ .....+.......-+
T Consensus 171 ~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~ 250 (577)
T KOG1258|consen 171 ANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEE 250 (577)
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHH
Confidence 777777766444444443333322 1 1222222222211100 000001111111111
Q ss_pred -----HHHH-------hccChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---
Q 010642 141 -----QACA-------HLGALEFGEKIHRYISEH-------GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD--- 198 (505)
Q Consensus 141 -----~~~~-------~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~--- 198 (505)
..+. ........+..++.-++. -.+++..+|...++.-.+.|+.+.+.-+|++..-|-
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh
Confidence 1110 001111111112211111 112345678888888899999999999999887552
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVV 277 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 277 (505)
...|-..+.-....|+.+-|..++....+--++-...+-..-..-+-..|+++.|..+++.+.++ . |+ +..-..-+
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 23455555555555888888887776665433323322222222345678999999999999985 3 54 33444456
Q ss_pred HHHHhcCChHHHH---HHHHHC-CCCCCHHHHHHHHHH-----HHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 278 DLLGRAGLLDQAY---QLITSM-GVKPDSTIWRTLLGA-----CRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 278 ~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
....+.|..+.+. +++... ..+-+..+...+..- +...++.+.|..++.++.+..|++...|..+++....
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHh
Confidence 6778889999888 555554 222233333333322 3456789999999999999999999999999988876
Q ss_pred CC
Q 010642 349 VG 350 (505)
Q Consensus 349 ~g 350 (505)
.+
T Consensus 488 ~~ 489 (577)
T KOG1258|consen 488 QP 489 (577)
T ss_pred CC
Confidence 65
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.2 Score=36.31 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHH-H
Q 010642 134 VTCLLVLQACAHLGALEFGEKIHRYISEH-GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD-VVSWSAMIS-G 208 (505)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~-~ 208 (505)
..+......+...+.+..+...+...... ........+..+...+...+++..+...+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444455555554444444431 2233344445555555555556666666555443 11 122222222 5
Q ss_pred HHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCC
Q 010642 209 LAMNGHGRDAIESFGAMQRAGV--FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGL 285 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 285 (505)
+...|+++.|...|.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7777778888887777744211 112233344444466777888888888888753 223 35667777777888888
Q ss_pred hHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 286 LDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888777 44454 344444455555667788888888888887765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=44.53 Aligned_cols=171 Identities=14% Similarity=0.113 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C---------hhHHHHHHHHHHH----CCChhH
Q 010642 49 GLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQR-D---------TVAWNVLISCYIR----NQRTRD 114 (505)
Q Consensus 49 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---------~~~~~~li~~~~~----~g~~~~ 114 (505)
+.-+|..++.. +|| ....++...+=.||-+.+++.+....+. + ...|+..+..+.. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 44566666554 343 3455666667778888888888765542 2 2345555555544 456778
Q ss_pred HHHHHHHchhccCCCCCCHHHHHHH-HHHHHhccChHHHHHHHHHHHHc--CC-CCchhHHHHHHHHHHhcCCHHHHHHH
Q 010642 115 ALCLFDNLNREESGCKPDDVTCLLV-LQACAHLGALEFGEKIHRYISEH--GY-GSKMNLCNSLIAMYSKCGSLGMAFEV 190 (505)
Q Consensus 115 A~~~~~~m~~~~~~~~pd~~t~~~l-l~~~~~~~~~~~a~~i~~~~~~~--~~-~~~~~~~~~l~~~y~~~g~~~~A~~~ 190 (505)
|.+++..+.+ .-|+...|... .+.+...|++++|.+.++.+... .. ......+--+...+.-.+++++|...
T Consensus 252 a~~lL~~~~~----~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 252 AEELLEEMLK----RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHH----hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 9999999866 56776665543 45667789999999999976542 11 22334455677788889999999999
Q ss_pred HhcCCCCC---hhHHHHHH-HHHHhCCCh-------HHHHHHHHHHHH
Q 010642 191 FKGMPEKD---VVSWSAMI-SGLAMNGHG-------RDAIESFGAMQR 227 (505)
Q Consensus 191 ~~~m~~~~---~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 227 (505)
|..+.+.+ ...|.-+. .++...|+. ++|.++|.+...
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99987543 22333333 345567777 888888888653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=7.7 Score=40.59 Aligned_cols=117 Identities=6% Similarity=-0.063 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcc--hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIH--HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 323 (505)
..+.+.|...+.......++.+... .+..+.......+..++|...+... ....+...+.--+......++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 3455778888877655434433322 2333433333333366777777765 222233444444445557788877777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+..|-......+.-..-+.+++...|+.++|...|+...
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777655444445566677888777888888888888763
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.5 Score=40.41 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=69.9
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
+.-.-+..+++.-+++-++..+ +.||..+.-.++. --......++++++++.++.|-.. +-.....+.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe----i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~-------lg~s~~~~~ 242 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE----INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEAS-------LGKSQFLQH 242 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHh-------hchhhhhhc
Confidence 3333444555555555555544 4555443332221 123445677888888877754110 000000000
Q ss_pred CHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 183 SLGMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 183 ~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
. -..++....++ +..-..+..+.-+.|+.++|++.|++|.+....- +....-.|+.++...+.+.++..++
T Consensus 243 ~----g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 243 H----GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c----cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 00111111222 2233345555667777777777777776542211 2234456677777777777777777
Q ss_pred HHHh
Q 010642 258 DRMS 261 (505)
Q Consensus 258 ~~~~ 261 (505)
.+..
T Consensus 319 ~kYd 322 (539)
T PF04184_consen 319 AKYD 322 (539)
T ss_pred HHhc
Confidence 7654
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.3 Score=35.83 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=30.5
Q ss_pred HhcCChHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 281 GRAGLLDQAYQLITSM----GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+.|++++|.+.|+.+ +..| ....--.|+.++.+.++++.|...+++.+++.|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3455555555555555 2112 123334455666666666666666666666665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.4 Score=42.99 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=77.6
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHH
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 290 (505)
+..++.+-++.-++..+ +.||-.+.-.++ +--....+.++.+++++..+. +- ..+. .....+ ......
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg---~s~~~~-~~g~~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLG---KSQFLQ-HHGHFW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhc---hhhhhh-cccchh
Confidence 44455555555555554 445543322222 333445577788887777653 10 0000 000000 000011
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 291 QLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--ESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 291 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
+.+..-..+|-..+=..|..++.+.|+.++|++.++.+.+..|. +-.....|+..+...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112222333345666677888888888888888776643 3346667888888888888888888776554444
Q ss_pred CC
Q 010642 369 TT 370 (505)
Q Consensus 369 ~~ 370 (505)
+.
T Consensus 328 kS 329 (539)
T PF04184_consen 328 KS 329 (539)
T ss_pred ch
Confidence 43
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.9 Score=39.85 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHH--HHHHHHhccCCHHHH
Q 010642 181 CGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ--TFT--GVLSACSHCGLVDEG 253 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~--~ll~~~~~~g~~~~a 253 (505)
.|+..+|-..++++.+ .|..+++.-=.++.-+|+.+.-...++++... ..||.. .|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555542 35556666666666666666666666666533 223332 222 122234456666666
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCC---C---HHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP---D---STIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~---~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
++.-++..+- .+.|...-.+....+.-.|++.++.+++.+-.-.- + ...|....-.+...+.++.|+.+|++
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 6665555431 12233444555566666666777766666541000 0 11111122223444666666666665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.1 Score=44.12 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQ--TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL 286 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 286 (505)
|...|+|.+|+.+-.++... -|.. +--.|..-+...++.-+|-++..+...+ | .-.+..|++...+
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEW 1042 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHH
Confidence 34556666666666655321 1111 1134555556666666666666655543 2 2234556666666
Q ss_pred HHHHHHHHHC
Q 010642 287 DQAYQLITSM 296 (505)
Q Consensus 287 ~~A~~~~~~~ 296 (505)
++|.++....
T Consensus 1043 ~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1043 EEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHhc
Confidence 6666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.53 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHH---HHHHHHHHHHhc
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPDST---IWRTLLGACRIH 315 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~ll~~~~~~ 315 (505)
+.+..|+++.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. |-+ ... .|-.-...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45566777777777777664 33345667777777777777777777776665 222 111 222233457778
Q ss_pred CchhHHHHHHHHHHHhcCCC
Q 010642 316 KHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~ 335 (505)
|+.+.|..-|+..-+++.+-
T Consensus 129 g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH
Confidence 88888888888888877543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.4 Score=34.19 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVF--PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
...+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...+++.++-
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555566666666555543111 01233444555555566666666555555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.75 E-value=5.3 Score=36.45 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=76.1
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+ --.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 445567777777777766654222 2334455666777777777777777766442 10111111122344455555555
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc--CCCCchHHHHHHHHHhCC
Q 010642 288 QAYQLITSMGVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK--AQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 288 ~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 350 (505)
+...+-.+..-.| |...--.+...+...|+.+.|...+-.+++.+ -.+...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4445544443344 44444455566666777777766666655543 333445556666665555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.55 Score=42.08 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=75.6
Q ss_pred HHHHHHHhcCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc-------
Q 010642 82 FEACKLFDEIP--QRDTVAWNVLISCYIRN-----QRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG------- 147 (505)
Q Consensus 82 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~------- 147 (505)
-..++.|...+ ++|-.+|-+.+..+... +..+-....++.|.. .|+.-|..+|..|++.+-+-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHH
Confidence 34456677666 57888888888777653 455656667788888 899999999999998764432
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 148 ---------ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 148 ---------~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-+-+..++++|..+|+-||..+-..|++++.+.|-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224577888999999999999999999999887764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=4.9 Score=35.88 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESG---DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+..-|.+.|.+..|..-++++++.-|..+. .+..|..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345688999999999999999998766554 455678899999999999888655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.7 Score=39.13 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc-chHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFP--DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI-HHYGCVV 277 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li 277 (505)
.|+.-+..| +.|++.+|...|....+....- ....+-.|..++...|+++.|..+|..+.+.++-.|.. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 477665544 5677888888888888753211 12344558888888888888888888888876666653 6677777
Q ss_pred HHHHhcCChHHHHHHHHHC
Q 010642 278 DLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~ 296 (505)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8888888888888888877
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.95 E-value=9.4 Score=36.97 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCV 276 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 276 (505)
...|-..+++-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-...+ ||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 3445556666666666777777777777776 5566667777776554 466667777777655432 33322 2455
Q ss_pred HHHHHhcCChHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 277 VDLLGRAGLLDQAYQLITSM--GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+.-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 56666777777777777754 22222 446777777666777777777666666666654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.9 Score=33.64 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=86.8
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhC-CCHHHHHHHHhcCC
Q 010642 15 FYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD-SQLMTTLMDLYSTF-EKSFEACKLFDEIP 92 (505)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 92 (505)
++.++.+.+.+++|+...+..+++.+.+.|.+..-.++ +..++-+| ..+-..|++.-.+. .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666777889999999999999999999987665554 34444444 44444444332211 11345666666654
Q ss_pred CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 93 QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 93 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
..+..++..+...|++-+|+++.+..... ..+ .-..++.+..+.+|...--.++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~-----~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-DSV-----PARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccC-----CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667788999999999999999875330 122 2244667777777766666666655553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=2.3 Score=41.41 Aligned_cols=77 Identities=9% Similarity=0.016 Sum_probs=48.3
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.+|.++.++. .+.| |......+..+....++++.|...|++...+.|+...+|........-.|+.++|.+.+++-.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445555444 3333 455555555555566667777777777777777777777777777777777777777666643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=4.9 Score=39.25 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=104.6
Q ss_pred hHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHHh
Q 010642 200 VSW--SAMISGLAMNG-----HGRDAIESFGAMQR-AGVFPDD-QTFTGVLSACSH---------CGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 261 (505)
..| ..++.+..... ..+.|+.+|.+... ....|+. ..|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 24678889999882 2356654 334333333221 234556667766666
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch-
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD- 338 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 338 (505)
+ --+-|......+..++.-.++++.|..+|++. .+.||. .+|....-.+.-.|+.++|.+.+++..++.|.....
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 22345666667777778888899999999998 777874 466666666778899999999999999999875432
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHH
Q 010642 339 -YVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 339 -~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
....+++|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 334455676554 677777763
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.64 Score=42.33 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..++..++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345666778888889999999999999999999999999999999999999999999998865
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.45 E-value=4.5 Score=32.05 Aligned_cols=136 Identities=11% Similarity=0.146 Sum_probs=77.3
Q ss_pred HhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.-.|.+++..++..+... .+..-+|-+|.-....-+-+-..+.++.+- --.|. ...|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIG---kiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIG---KIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHG---GGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHh---hhcCc----------hhhcchHHHHHHH
Confidence 346777888888776653 344556655554444444444444444432 12222 2233333333333
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
-.+- .+......-++.+...|+-+.-.+++..+ .-+|++...-.+..+|.+.|+..++..++.++.+.+.
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3221 13445556677888899999988888887 3467788888899999999999999999998887763
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.34 Score=28.03 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=9.2 Score=35.37 Aligned_cols=235 Identities=10% Similarity=0.006 Sum_probs=115.3
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCCh----hHHHHHHHHchhccCCCCCCHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRT----RDALCLFDNLNREESGCKPDDVTCL 137 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~pd~~t~~ 137 (505)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++.++..+.. -.||...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~----~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL----EDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh----cCCCHHHHH
Confidence 345556666666666666543333333333445666666666666666653 356666665522 235555555
Q ss_pred HHHHHHHhccChHH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCC-C
Q 010642 138 LVLQACAHLGALEF--GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNG-H 214 (505)
Q Consensus 138 ~ll~~~~~~~~~~~--a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-~ 214 (505)
..+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+..-+..+|...-...+.++.+.+ .
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC
Confidence 55555554432110 11122222222223455666666677777666444444444444555555444555555442 2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
..++...+..+.. .+|...-...+.++.+.|+. .+...+-...+. + + .....+.+++..|.. +|...+.
T Consensus 190 ~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 190 NPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHH
Confidence 3455555555553 23555555566666666663 344444433332 1 1 223455566666664 4555555
Q ss_pred HC-CCCCCHHHHHHHHHH
Q 010642 295 SM-GVKPDSTIWRTLLGA 311 (505)
Q Consensus 295 ~~-~~~p~~~~~~~ll~~ 311 (505)
++ .-.||..+-...+.+
T Consensus 259 ~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 259 TLLYKFDDNEIITKAIDK 276 (280)
T ss_pred HHHhhCCChhHHHHHHHH
Confidence 54 334455444444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.55 Score=26.98 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
.|..+...+...|++++|++.+++..++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666667777777777777777776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.01 E-value=4.8 Score=37.46 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 216 RDAIESFGAMQRAGVFPDDQ--TFTGVLSACSHCGL--VDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++..+++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 56677778888777665442 33344433332222 44778888888886 8888888876554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=7.9 Score=33.64 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+..||-+.--+...|+++.|.+.|+...+....-+....|.-| ++--.|++.-|.+-+...-+...-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 4567777777778888888888888777643322222222222 33445777777665555543212222222222222
Q ss_pred HHHhcCChHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------CchHHHHHHHHHhCC
Q 010642 279 LLGRAGLLDQAYQLI-TSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-------SGDYVLLLNLYSSVG 350 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 350 (505)
-+.-++.+|..-+ ++. ...|..-|...|..+.- |+.. .+.+++++.+...++ ..+|..|..-|...|
T Consensus 177 --E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455554433 333 12345556555544322 2221 123334443333322 358889999999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q 010642 351 DWEKVKELREFMNEKGL 367 (505)
Q Consensus 351 ~~~~a~~~~~~m~~~~~ 367 (505)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998776655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.77 E-value=11 Score=34.92 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 135 TCLLVLQACAHLGALE---FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
++..++.++...+..+ +|..+.+.+... .+..+.++-.-+..+.+.++.+.+.+++.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3444555555554433 334444444322 22334444444555555566666666666554
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.46 E-value=4 Score=33.99 Aligned_cols=85 Identities=15% Similarity=-0.022 Sum_probs=43.0
Q ss_pred HHhcCChHHHHHHHHHC-CCCCCHHHHHH---HH--HHHHhcCchhHHHHHHHHHHHhc-CCCCchHHHHHHHHHhCCCH
Q 010642 280 LGRAGLLDQAYQLITSM-GVKPDSTIWRT---LL--GACRIHKHVTLGERVIEHLIELK-AQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---ll--~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 352 (505)
....|+...|...|.++ ...|.+....- |- -.+..+|.++....-.+.+...+ |-....-..|.-+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 44556666666666666 11222222211 11 12345566655554444443322 32333444666666677777
Q ss_pred HHHHHHHHHHHh
Q 010642 353 EKVKELREFMNE 364 (505)
Q Consensus 353 ~~a~~~~~~m~~ 364 (505)
..|.+.|..+..
T Consensus 184 a~A~~~F~qia~ 195 (221)
T COG4649 184 AKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHc
Confidence 777777776654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.5 Score=27.89 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
+|..|..+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999998844
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.08 E-value=8.2 Score=35.97 Aligned_cols=63 Identities=10% Similarity=0.214 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHhhhcCCcC--CcchHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSH--CG----LVDEGMMFLDRMSKDFGILP--NIHHYGCVV 277 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li 277 (505)
+++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|.+.+.+-. +...+..|+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 34567788899999998888887764333322 22 24678899999998765533 333444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.04 E-value=16 Score=35.51 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcC-CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHH-HHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFG-ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIW-RTLLGAC 312 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 312 (505)
.|...+.+..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|..+|+-- ...||...| +..+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666666667778888888888876 5 5677888888887655 46777788888754 334554433 4455566
Q ss_pred HhcCchhHHHHHHHHHHHhcCCC--CchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQE--SGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...++-+.|..+|+...+.-..+ ...|..++.--..-|+...+..+-++|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 67788888888888655433222 4577777777777777777766655554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.39 Score=27.96 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF 188 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 188 (505)
++++++.. |.+..+|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445544 567777888888888888887775
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.92 E-value=2.5 Score=35.12 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHhcCCCC-Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 179 SKCGSLGMAFEVFKGMPEK-DV---VSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
...|.+++...-.+-+..+ ++ ..-.+|.-+-.+.|++.+|.+.|.++...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 4455555555555444321 11 12334444445556666666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.98 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
|..+...|.+.|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=13 Score=33.96 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=50.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
....|...|.+.+|.++.++.+..+|-+...+..|+..|+..|+--.|.+-++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33678999999999999999999999999999999999999999888888888774
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.8 Score=38.73 Aligned_cols=159 Identities=13% Similarity=0.023 Sum_probs=116.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH----HHHHhcCCh
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV----DLLGRAGLL 286 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~ 286 (505)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|.-+= -++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 455777888888899999999999999999885 4567765554433 345589999
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC----CchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE----SGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
++|++.-++. .++| |.-.-.++...+-..|+..++.++..+-...=... ...|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988 6665 44455667777888899999988766644322211 1234456667788899999999999
Q ss_pred HHHhCCCCCCCc
Q 010642 361 FMNEKGLQTTPG 372 (505)
Q Consensus 361 ~m~~~~~~~~~~ 372 (505)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765555555444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.54 Score=38.42 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=28.4
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHA 54 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 54 (505)
|+.+.+++.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44455556666666666666655444445555666666666655555444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.48 E-value=5.7 Score=37.27 Aligned_cols=218 Identities=14% Similarity=0.050 Sum_probs=121.3
Q ss_pred cCCcHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCCHHHHHHH-------HhcCCCC--ChhHHHHHHHHHHHCCC
Q 010642 43 FCSLMGGLQIHARVLRDG--YQLDSQLMTTLMDLYSTFEKSFEACKL-------FDEIPQR--DTVAWNVLISCYIRNQR 111 (505)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~-------~~~~~~~--~~~~~~~li~~~~~~g~ 111 (505)
..+.+++++.+.+.+..- ....-.++..+..+.++.|.+++++.. +....+. --.+|-.+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443321 111223455555666666666555432 1111111 12456666677766667
Q ss_pred hhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHhccChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCC
Q 010642 112 TRDALCLFDNLNREESGCKPD---DVTCLLVLQACAHLGALEFGEKIHRYISEHG-----YGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~l~~~y~~~g~ 183 (505)
+.+++.+-..-... .|..|. .....++..+....+.++++.+.|+.+.+.. -.....++..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 77776665544321 233331 1233456667777778888888888776532 12235678888888998888
Q ss_pred HHHHHHHHhcC-------CCCChh------HHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHh
Q 010642 184 LGMAFEVFKGM-------PEKDVV------SWSAMISGLAMNGHGRDAIESFGAMQ----RAGVFPDD-QTFTGVLSACS 245 (505)
Q Consensus 184 ~~~A~~~~~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~t~~~ll~~~~ 245 (505)
+++|.-+..+. .-.|.. +.-.|..++-..|+..+|.+.-++.. ..|-+|.. .....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 88876554332 222332 12234456667777777777666543 33433221 23445666778
Q ss_pred ccCCHHHHHHHHHHHh
Q 010642 246 HCGLVDEGMMFLDRMS 261 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~ 261 (505)
..|+.+.|+.-|+...
T Consensus 258 ~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAM 273 (518)
T ss_pred hcccHhHHHHHHHHHH
Confidence 8888888877776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.40 E-value=21 Score=37.58 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKM--NLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
+...-+....+...++.|..+-. ..+.+++. .+.....+-+.+.|++++|...|-+...--.. ...|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 45556677777777777766543 33433332 33445556667889999999888765421111 2245556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
.+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-.+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6677777788888888876 344446688899999999887666554431 211 11245567778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 293 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 877654 344444443 4568899998887754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.22 E-value=19 Score=35.06 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHchhccCCCCC----CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-------HHHHHHH
Q 010642 111 RTRDALCLFDNLNREESGCKP----DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-------SLIAMYS 179 (505)
Q Consensus 111 ~~~~A~~~~~~m~~~~~~~~p----d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-------~l~~~y~ 179 (505)
+.+++..+-+.+.. ..+.+ =..+|..++..+.+.++...|.+.+..+.-. .|+..+.. .+.++.+
T Consensus 274 ~~e~~~~~ce~ia~--~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~ 349 (549)
T PF07079_consen 274 DPEQVGHFCEAIAS--SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVC 349 (549)
T ss_pred ChHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHh
Confidence 55666555555543 22211 1357889999999999999999998877654 34333222 2233333
Q ss_pred hc----CCHHHHHHHHhcCCCCChhH---HHHHH---HHHHhCCC-hHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH
Q 010642 180 KC----GSLGMAFEVFKGMPEKDVVS---WSAMI---SGLAMNGH-GRDAIESFGAMQRAGVFPDDQT-----FTGVLSA 243 (505)
Q Consensus 180 ~~----g~~~~A~~~~~~m~~~~~~~---~~~li---~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~~ 243 (505)
.. -+..+=..+++.+...|+.. -.-|+ .-+-+.|. -++|+++++...+ +.|...- +..+=.+
T Consensus 350 ~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~ 427 (549)
T PF07079_consen 350 EDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQA 427 (549)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHH
Confidence 11 11222233444444333321 11122 23445666 7899999999887 3443322 2222223
Q ss_pred Hhc---cCCHHHHHHHHHHHhhhcCCcCCc----chHHHHHHH--HHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 010642 244 CSH---CGLVDEGMMFLDRMSKDFGILPNI----HHYGCVVDL--LGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACR 313 (505)
Q Consensus 244 ~~~---~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 313 (505)
|.+ ...+.+-..+-+-+.+ -|++|-. ..-|.|.++ +...|++.++.-.-.-. .+.|++.+|+.+.-+..
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~ 506 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLM 506 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 332 2334444444444444 4888743 345555554 45678888876554444 67899999998888888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
...++++|..++..+ |++..++.
T Consensus 507 e~k~Y~eA~~~l~~L----P~n~~~~d 529 (549)
T PF07079_consen 507 ENKRYQEAWEYLQKL----PPNERMRD 529 (549)
T ss_pred HHhhHHHHHHHHHhC----CCchhhHH
Confidence 899999998887654 44555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.99 E-value=18 Score=34.53 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC----CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA----QESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
...+|..+...+++.|+++.|...+.++.+..+ ..+.....-+......|+.++|...++...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999887652 245566777888899999999999998887633
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.78 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m 225 (505)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.77 E-value=10 Score=31.33 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcch-HHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHH-YGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
.-...++.+.+..++..+.- +.|.... -..-.-.+.+.|++.+|..+|+++ .-.|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33456677777777777753 3443322 222233466778888888888887 333444444556655555444344
Q ss_pred HHHHHHHHHHhcC
Q 010642 321 GERVIEHLIELKA 333 (505)
Q Consensus 321 a~~~~~~~~~~~~ 333 (505)
=....+++.+.++
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 4444455555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.76 E-value=8.5 Score=32.76 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCh------hHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDV------VSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
.+..+.+.|.+.|+.+.|.+.|.++.+... ..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666666666554321 233444455555555555555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.5 Score=37.29 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=66.0
Q ss_pred HHhcCChHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCH
Q 010642 280 LGRAGLLDQAYQLITSM--GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~--~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 352 (505)
+.+.|++++|..-|... -.++. ...|..-..++.+.+.++.|+.-..+.++++|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 55677777777777665 12221 234444556778899999999999999999988777777778899999999
Q ss_pred HHHHHHHHHHHhCC
Q 010642 353 EKVKELREFMNEKG 366 (505)
Q Consensus 353 ~~a~~~~~~m~~~~ 366 (505)
++|+.-|+++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.3 Score=37.85 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCCHHHHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPDSTIWRTL 308 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l 308 (505)
+..++..+...|+.+.+...++++.. --+-+...|..++.+|.+.|+...|+..|+++ |+.|...++...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444555555555555555555553 22234445555555555555555555555444 556655555444
Q ss_pred HH
Q 010642 309 LG 310 (505)
Q Consensus 309 l~ 310 (505)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.97 E-value=4.6 Score=37.04 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-C--------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCC
Q 010642 59 DGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-R--------DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGC 129 (505)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 129 (505)
.|.+....+...++..-....++++++..+-.+.. + ..++|- +.+ -.-++++++.++..=.+ .|+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIq--YGi 131 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQ--YGI 131 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcch--hcc
Confidence 34445555666666666667788888887766653 1 223333 322 23467799999988888 899
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
-||.++++.++..+.+.+++..|.++...|+...
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.97 E-value=19 Score=33.29 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=11.7
Q ss_pred HHCCChhHHHHHHHHchh
Q 010642 107 IRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~ 124 (505)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356667777777766654
|
It is also involved in sporulation []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.94 E-value=12 Score=30.96 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=25.8
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE 196 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 196 (505)
...++.+.++.++.-+.-.. |..+..-..-...+.+.|++++|..+|+++.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44455555555555554432 11222222233345556666666666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.62 E-value=23 Score=33.83 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
....+|..++....+.|+++.|...+.++...+..+ +......-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777888888888888888888777643211 222333334455566777888887777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.37 E-value=35 Score=35.65 Aligned_cols=53 Identities=8% Similarity=-0.141 Sum_probs=35.0
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCcHHHHHHHHHHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPT---NPFACSFAIKCCMKFCSLMGGLQIHARVL 57 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 57 (505)
.-+.+.+.+++|++.-+.-... .| -.......+..+...|++++|-...-.|.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3456778899999887765543 33 23456667777777788887766655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.9 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666667777777777777766654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.7 Score=30.46 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+-|++.+..+-+++|++.+++..|.++++-++..-..+...|-.++
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 67788888888889999999999999988887755443444555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.89 E-value=5.4 Score=33.96 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCC---Cc----h
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQACAHLGALEFGEKIHRYISEHGYG---SK----M 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~---~~----~ 168 (505)
.+..+..-|.+.|+.++|++.|.++.. ....|. ...+-.+++.+...+++..+.....++...--. .+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~--~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD--YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh--hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344555555555555555555555544 222222 223444555555555655555555444432111 11 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.+|..|.. ...+++..|-+.|-...
T Consensus 116 k~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHH--HHhchHHHHHHHHHccC
Confidence 22333322 33567777776665553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.4 Score=25.28 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
+|..+...+...|++++|...|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666777777777777777776665
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.74 E-value=3.7 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 297 GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 297 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+-|++.+..+.+.+|++.+++..|.++++-++..-.+....|-.++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 67789999999999999999999999999988876654444666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.3 Score=36.67 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=72.8
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-K--------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP 232 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 232 (505)
.|.+....+...++..-....++++++..+-++.. + ...+|-.++. .=++++++-++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35555666667777777777888888888776652 2 2334443333 335678888888888899999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|.+|++.+++.+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.75 E-value=78 Score=37.87 Aligned_cols=306 Identities=12% Similarity=0.052 Sum_probs=162.3
Q ss_pred HHHccCCcHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHh-cCCCCChhHHHHHHHHHHHCCChh
Q 010642 39 CCMKFCSLMGGLQIHARV----LRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFD-EIPQRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 113 (505)
+-.+.+.+.+|...++.- .+. ......+-.+...|+.-++++....+.. +...++ ....|......|+++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 444556677777776662 111 1122334445557777777777666665 333333 233455567788888
Q ss_pred HHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHHHHH
Q 010642 114 DALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN-SLIAMYSKCGSLGMAFEVF 191 (505)
Q Consensus 114 ~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~-~l~~~y~~~g~~~~A~~~~ 191 (505)
.|...|+.+.+ ..|+ ..+++-++..-...+.++......+-.... ..+....++ .=+.+--+.+++|......
T Consensus 1467 da~~Cye~~~q----~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERLIQ----KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHhhc----CCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 88888888855 4455 566776666666666666665544433332 233333333 3345556777777776666
Q ss_pred hcCCCCChhHHHHH--HHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------
Q 010642 192 KGMPEKDVVSWSAM--ISGLAMNGH--GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRM------- 260 (505)
Q Consensus 192 ~~m~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~------- 260 (505)
. ..+..+|... .....+..+ .-.-.+..+-+++.-+.| +.+|+..|.+..+.++.-.+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 4556666554 222222221 111122333333221111 12222222222222211111
Q ss_pred ---hhhcCCcCCcch------HHHH---HHHHHhcCChHHHH-HHHHHCCCCC-----CHHHHHHHHHHHHhcCchhHHH
Q 010642 261 ---SKDFGILPNIHH------YGCV---VDLLGRAGLLDQAY-QLITSMGVKP-----DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 261 ---~~~~~~~p~~~~------~~~l---i~~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
....+..++..+ |-.- .+.+.+....--|. +.+.....+| -..+|-...+.+++.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 011122332211 1111 11222211111111 1111111122 2457888889999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 367 (505)
..+-.+.+..+ +..+.-.+......|+...|..++++..+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98888877774 46888999999999999999999998876554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.75 E-value=38 Score=34.26 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-----CCCCCHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-----GVKPDSTIWRTL 308 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 308 (505)
..+|..-+.--...|+.+...-+|++..- .+.-=...|-..+.-....|+.+-|..++... +-.|....+.+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677777777778888888888887754 22222344555555556668888887777665 333444444333
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
+ +-..|++..|..+++.+.+.-|.....-..-++...+.|+.+.+..
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3 3356788888888888877765444444455666677788877773
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.50 E-value=22 Score=31.37 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHC-----CCCCCHHHHHHHH---HHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 284 GLLDQAYQLITSM-----GVKPDSTIWRTLL---GACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 284 g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.++++|+..++.. +-..+...-..++ .--...+++..|+.+++++.....+++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4555666666555 2222222223333 334567899999999999887665443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.00 E-value=17 Score=29.59 Aligned_cols=67 Identities=6% Similarity=-0.070 Sum_probs=36.0
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHh
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDV-VSWSAMISGLAM 211 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~ 211 (505)
...++.+.+..++..+.-.. |....+-..-...+...|++++|.++|+++.+... ..|..-+.++|-
T Consensus 21 L~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34566666666666665432 22222222333445667777777777777765442 244444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.62 E-value=4.3 Score=30.46 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 217 DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666777889999999999999999999999999999887534 33336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.44 E-value=6.7 Score=31.89 Aligned_cols=51 Identities=8% Similarity=0.029 Sum_probs=25.0
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.++.+++..++..+.-+.|..+..-..-...+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444455555555555555444444444444444555555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.20 E-value=11 Score=37.89 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+.-..+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3456666665554433 2455566666666666666666666655443 3334444555555443333333
Q ss_pred HHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCC
Q 010642 259 RMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 300 (505)
...+. |. -|. .+ -+|...|+++++.+++.+-+.-|
T Consensus 717 ~~~~~-g~-~N~-AF----~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 717 LAKKQ-GK-NNL-AF----LAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHhh-cc-cch-HH----HHHHHcCCHHHHHHHHHhcCcCc
Confidence 33322 21 121 11 22445566666666665553333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.85 E-value=30 Score=31.27 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCC----cCCcch
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA---GVF--PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGI----LPNIHH 272 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~ 272 (505)
...||..+.+.|++++..+.|.+|... -+. -+..+.++++...+...+.+.-..+++.......- ...-.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 334555556666666666655555421 111 12334555555555444444444444333321111 111223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC--------CCC------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM--------GVK------PDSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
-+-|...|...|.+.+..++++++ |-. --..+|..=|..|...++-..-..++++.+...
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 344555566666666666665555 100 012344445555666666666666666655544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.4 Score=39.29 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=73.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCch
Q 010642 242 SACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 318 (505)
.-|.+.|.+++|+..|..... ..| +..++..-..+|.+..++..|+.--... .+.. -...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999998774 345 8888888888999999998887665554 2211 123454445555566788
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
.+|.+-++..+++.|.+.. |=..|.+.....++
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 8888888999999887533 33344444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.9 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.46 E-value=13 Score=27.62 Aligned_cols=63 Identities=13% Similarity=0.301 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-++.+-++.+....+.|+.....+.+.||-+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778889999999999999999999999999998875423 23445666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.21 E-value=0.66 Score=37.91 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhH
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRD 114 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 114 (505)
.++..+.+.+........++.+...+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666677788888888888888777667788999999999999888888888874433 333456666677777777
Q ss_pred HHHHHHHchh
Q 010642 115 ALCLFDNLNR 124 (505)
Q Consensus 115 A~~~~~~m~~ 124 (505)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 7777776643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=20 Score=35.11 Aligned_cols=126 Identities=12% Similarity=0.034 Sum_probs=81.1
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
...|++-.|.+-+....+.+.-.|+.... ....+...|.++.+...+... -+.....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444333444444333 333466788898888888776 22335667788888888888999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCc
Q 010642 323 RVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPG 372 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 372 (505)
...+.|+..+..++.........--..|-++++.-.|+++...+-+.+.+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 88888887775555544444444456677888888888887655444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.68 E-value=3.5 Score=23.17 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=15.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334455556666666666666655554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.68 E-value=49 Score=32.91 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=115.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
|....-+++..+..+..+.-...+..+|.. +..+...|..++..|... .-+.-..+++++++..+ .|+.....|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~----~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE----YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 334566778888888888888888888876 445777888888888877 55677788888888753 345556667
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC------CCh---hHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE------KDV---VSWSAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~ 244 (505)
+..|-+ ++.+.+...|.++.. .+. ..|.-++..- ..+.+..+.+..++.. .|..--.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777766 788888887776542 121 2566555421 3455666666666653 34444556666677788
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
....++++|++++..+.+ ....|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 889999999999987766 233344443444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.64 E-value=34 Score=30.94 Aligned_cols=242 Identities=12% Similarity=0.146 Sum_probs=130.2
Q ss_pred CCHHHHHHHHhcCCC----C---ChhHHHHHHHHHHHCCChhHHHHHHHHchhc-cCCC--CCCHHHHHHHHHHHHhccC
Q 010642 79 EKSFEACKLFDEIPQ----R---DTVAWNVLISCYIRNQRTRDALCLFDNLNRE-ESGC--KPDDVTCLLVLQACAHLGA 148 (505)
Q Consensus 79 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--~pd~~t~~~ll~~~~~~~~ 148 (505)
.+.++|+.-|....+ + .-.+.-.+|..+.+.+++++.+..|.++..- .+.+ .-+..+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355566666655432 1 1223445667777777777777777666420 0111 1234456666666666666
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C-------ChhHHHHHHHH
Q 010642 149 LEFGEKIHRYISEH-----GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--------K-------DVVSWSAMISG 208 (505)
Q Consensus 149 ~~~a~~i~~~~~~~-----~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--------~-------~~~~~~~li~~ 208 (505)
.+.-...++.-++. +-..--.+-+.|...|...|.+.+-.++++++.+ . -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555433321 1111123345677888888888888888776642 1 13457777788
Q ss_pred HHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHHhhhcCCcCCc-----chHHHHH
Q 010642 209 LAMNGHGRDAIESFGAMQRA-GVFPDDQTFTGVLSACS-----HCGLVDEGMMFLDRMSKDFGILPNI-----HHYGCVV 277 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li 277 (505)
|....+-.+-..+|++...- ..-|.+.. ..+|.-|. +.|.+++|..-|-+.-+.|.-.-++ --|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888777777788876532 23344433 34455553 4678887765444444333222222 2345555
Q ss_pred HHHHhcCCh----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 278 DLLGRAGLL----DQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 278 ~~~~~~g~~----~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
.++.+.|-- ++|.- ..-.|.....+.|+.+|-. ++..+-++++.
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 666665421 11100 0223556677888888844 44444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.19 E-value=17 Score=36.77 Aligned_cols=99 Identities=16% Similarity=0.057 Sum_probs=56.9
Q ss_pred HhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHH
Q 010642 76 STFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i 155 (505)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHH
Confidence 3456666666554432 2455677777777777777777777766543 44555556666666555555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
-....+.|. .|....+|...|+++++.+++..
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555541 22333445566666666666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.15 E-value=67 Score=34.06 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=33.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++..+.+..+.+.+..+.+.. ++.++..|..++.-+++.+..++-.++..+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 445566677777766665544 455678899999999888865554444333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.11 E-value=2.7 Score=25.25 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 337 GDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3677888889999999999988887754
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.98 E-value=2.1 Score=23.01 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 010642 338 DYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
....|..++...|++++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667788888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.94 E-value=13 Score=32.11 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=18.4
Q ss_pred ccChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 146 LGALEFGEKIHRYISEH---GYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 146 ~~~~~~a~~i~~~~~~~---~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..+.+++.+++-...+. +-.+|+.++.+|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444444444432 1133444444444444444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.6 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666667777777777666666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.44 E-value=12 Score=32.23 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=48.3
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHHCCChh
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIP-------QRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 113 (505)
.+.|+ +.|++.|-.+...+.-.++....+|...|. ..+.++|+.++.+.. ..|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44444 456666666666665556666777777666 455677776665543 246777888888888888887
Q ss_pred HHH
Q 010642 114 DAL 116 (505)
Q Consensus 114 ~A~ 116 (505)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.32 E-value=40 Score=30.91 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQR-----AGVFPDDQTF 237 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 237 (505)
+.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|.+.++.+.+ .|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3455667888899999999888877643 456788888899999988888888877753 4666555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.70 E-value=12 Score=24.41 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCc
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGY 414 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 414 (505)
...+.-++.+.|++++|.+..+.+.+. .|...++..+-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988763 23444555666667777777763
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=6.9 Score=38.11 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=83.0
Q ss_pred HhCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 210 AMNGHGRDAIE-SFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 210 ~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
...|+.-.|.+ ++.-+....-.|+.+.+.+.| ..+.|+++.+.+.+..... -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666554 555555555566666555554 4678999999888887765 445567788888998999999999
Q ss_pred HHHHHHHC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 289 AYQLITSM-GVK-PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 289 A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
|..+-.-| +-. .++.+...........|-++++...++++..+.|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99888877 211 134444444444566677888888888888777554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.10 E-value=3.2 Score=22.25 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFK 192 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~ 192 (505)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.69 E-value=80 Score=33.24 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=97.3
Q ss_pred HccCCcHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHH
Q 010642 41 MKFCSLMGGLQIHARVLRDGYQL---DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALC 117 (505)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 117 (505)
.+.+.+++|+.+.+... |..| -..++...|+.+.-.|++++|-...-.|...+..-|.--+..+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 34566777777665443 3333 346788889999999999999999999998899999998988888887765443
Q ss_pred HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHH------------------HHHHHcCCCCchhHHHHHHHHHH
Q 010642 118 LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIH------------------RYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 118 ~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~------------------~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
+ +.. ..-..+...|..++-.+.. .+...-.++. .+..+. .-+...-..|+..|.
T Consensus 445 ~---lPt--~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 445 Y---LPT--GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred c---CCC--CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 3 322 1112345566666666655 2221111111 111111 112234455999999
Q ss_pred hcCCHHHHHHHHhcCCCCChh
Q 010642 180 KCGSLGMAFEVFKGMPEKDVV 200 (505)
Q Consensus 180 ~~g~~~~A~~~~~~m~~~~~~ 200 (505)
..+++.+|..++-...++++.
T Consensus 517 ~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HccChHHHHHHHHhccChHHH
Confidence 999999999999888876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 8e-09
Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 7/179 (3%)
Query: 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189
P + +LQ +L+ + S+ + + L +A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 190 VFKGMPEK-------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242
+ + + ++A++ G A G ++ + ++ AG+ PD ++ L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD 301
+ G+ ++ RA +L +++ + + P
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 1e-07
Identities = 19/167 (11%), Positives = 53/167 (31%), Gaps = 8/167 (4%)
Query: 124 REESGCKPDDVTCLLVLQACAHLGALEFGEKI---HRYISEHGYGSKMNLCNSLIAMYSK 180
++ L + C L + H + +++ N+++ +++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 181 CGSLGMAFEVFKGMPEK----DVVSWSAMISGLAMNGHGRDAIES-FGAMQRAGVFPDDQ 235
G+ V + + D++S++A + + IE M + G+
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282
+LS ++ S + P ++ + D+ +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 9e-08
Identities = 65/481 (13%), Positives = 146/481 (30%), Gaps = 137/481 (28%)
Query: 32 AC-SFAIKCCMKFCSLMGGLQIH----ARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA-C 85
C S+ ++C M F +I ++ L L + ++ +
Sbjct: 170 VCLSYKVQCKMDF-------KIFWLNLKNCNSP-----ETVLEMLQKLLYQIDPNWTSRS 217
Query: 86 KLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC-LLVLQACA 144
I R + + ++++ + L + N+ ++ +++C +L+
Sbjct: 218 DHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFK 275
Query: 145 HLG-ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF-----EVFKGMPEKD 198
+ L H + H + ++ K L EV P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMT--LTPDEVK-SLLLKY--LDCRPQDLPREVLTTNPR-- 328
Query: 199 VVSWSAMISGLAMNGHGR-------------DAIESF------GAMQRA----GVFPDDQ 235
+S +I+ +G IES ++ VFP
Sbjct: 329 RLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 236 TFT-GVLSACSHCGLVDEGMMFLDRM---------SKDFGI-LPNIHHYGCVVDLLGRAG 284
+LS + + M+ ++++ K+ I +P+I+ ++L +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVK-- 438
Query: 285 LLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344
L+ Y L H+ +++H K +S D +
Sbjct: 439 -LENEYAL----------------------HR------SIVDHYNIPKTFDSDDLIPPYL 469
Query: 345 ---LYSSVG-------DWEKVKELRE------FMNEK-GLQTTPGCSTIGLKGVVH---- 383
YS +G E++ R F+ +K +T ++ + +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 384 --EFVVDDVSHP--RINEIYQMLDEINKQLKIAGYVAEITSELHNLGAEEKGNALSYHSE 439
++ D+ +N I L +I + L ++ T L + + A+ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENL----ICSKYTDLLR-IALMAEDEAIFEEAH 584
Query: 440 K 440
K
Sbjct: 585 K 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 43/219 (19%)
Query: 320 LGERVIEHLIELKAQESGDYVLLLNLYSS--------VGDWEK------VKELREFMNEK 365
L + I+H+I K SG L L S V + + + ++ +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 366 GLQTTPGCSTIG-LKGVVHEFVVDDVSHPR-INEIYQMLDEINKQLKIAGYVAEITSELH 423
+ T L F +VS + ++ Q L +L+ A V +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVL-----ID 156
Query: 424 NLGAEEK----GNALSYHSEKLAIAFGVL------ATPPGTTIRVAKNLRICVDCHNFAK 473
+ K + + + + F + P T + + + L +D N+
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTS 215
Query: 474 VLSGVYN---REVIIRDRLRFHHFREGRCSC----NDYW 505
N R I+ LR + +C +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.41 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.73 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.6 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.56 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.42 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.3 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.27 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.58 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.51 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.51 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.26 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.83 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.8 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.06 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.89 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.4 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.78 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.26 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.1 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.66 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.32 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.19 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.85 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.74 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.7 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.29 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=287.49 Aligned_cols=357 Identities=10% Similarity=-0.050 Sum_probs=295.0
Q ss_pred cccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS 81 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (505)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|.++++.+... +++..+++.++.+|.+.|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 5678899999999999999985 4678899999999999999999999999987543 67899999999999999999
Q ss_pred HHHHHHHhcCCCC-------------------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC---------------
Q 010642 82 FEACKLFDEIPQR-------------------DTVAWNVLISCYIRNQRTRDALCLFDNLNREES--------------- 127 (505)
Q Consensus 82 ~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------- 127 (505)
++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+...
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence 9999999965433 488999999999999999999999999865211
Q ss_pred -----------------------------------------------------CCCCCHHHHHHHHHHHHhccChHHHHH
Q 010642 128 -----------------------------------------------------GCKPDDVTCLLVLQACAHLGALEFGEK 154 (505)
Q Consensus 128 -----------------------------------------------------~~~pd~~t~~~ll~~~~~~~~~~~a~~ 154 (505)
..+++..++..++.++.+.|++++|.+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 012677788888999999999999999
Q ss_pred HHHHHHHcCC---------------------------------CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 010642 155 IHRYISEHGY---------------------------------GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKD 198 (505)
Q Consensus 155 i~~~~~~~~~---------------------------------~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~ 198 (505)
+|+++.+.+. +.+..+++.++.+|.+.|++++|.++|+++. ..+
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 9998886541 2345677777888888888888888888764 346
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 7788888888888888888888888888753 236778888888888888888888888888763 2346778888888
Q ss_pred HHHhcCChHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 279 LLGRAGLLDQAYQLITSM-------GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
.|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+|+++.+|..++.+|.+.
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 888888888888888887 44676 678888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhC
Q 010642 350 GDWEKVKELREFMNEK 365 (505)
Q Consensus 350 g~~~~a~~~~~~m~~~ 365 (505)
|++++|.+.++++.+.
T Consensus 564 g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 564 KIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8888888888888764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=284.73 Aligned_cols=391 Identities=10% Similarity=-0.013 Sum_probs=320.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|.+..+...+..+. .++...|+.++..+.+.|++++|..++++++.. .|+..++..++..|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444545544332 357889999999999999999999999999865 46778999999999999999999999
Q ss_pred HhcCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccC--------------CCCCCHHHHHHHHHHHHhccChHH
Q 010642 88 FDEIP--QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREES--------------GCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 88 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
|+.+. .++..+|+.++.+|.+.|++++|+++|+++... . +.+++..+|+.++.++.+.|++++
T Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-cccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 99994 578999999999999999999999999964331 1 335578999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHhc
Q 010642 152 GEKIHRYISEHGYGSKMNLCNS--------------------------------------LIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~--------------------------------------l~~~y~~~g~~~~A~~~~~~ 193 (505)
|.++|+++.+.+ +.+...+.. ++.+|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999875 333433333 36677789999999999999
Q ss_pred CCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 194 MPE--KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 194 m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
+.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+ ..+.+..
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAV 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHH
Confidence 987 7999999999999999999999999999997653 3667899999999999999999999999986 3455788
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
+++.++.+|.+.|++++|.++|+++ ...| +..+|+.++.++.+.|++++|.++++++.+..|++..+|..++.+|.+.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 9999999999999999999999998 4344 5789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccccc
Q 010642 350 GDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVAEI 418 (505)
Q Consensus 350 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~ 418 (505)
|++++|.++|+++.+.... ++.. |. . ....+...++.+++.+.++++.....+.|..|+.
T Consensus 455 g~~~~A~~~~~~~~~~~~~-~~~~-~~---~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQY-DPLL-LN---E----LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCC-CHHH-HH---H----HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHH-HH---H----HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 9999999999999875422 2211 11 0 1122346788999999998887776666888874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=251.95 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccC---------hHHHHHHHHHHHHcCCCCch
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA---------LEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~---------~~~a~~i~~~~~~~~~~~~~ 168 (505)
.++.+|.+|++.|++++|+++|++|.. .|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~--~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARR--NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 466666777777777777777777766 6777777777777777765433 56677777777777777777
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
.+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777777777777777777777664 4577777777777777777777777777777777777777777777777
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR 282 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 282 (505)
++.|++++|.++|++|.+. +..|+..||+.++..|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 7777777777777777765 777777777777777664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-27 Score=228.03 Aligned_cols=351 Identities=11% Similarity=0.037 Sum_probs=308.4
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4567899999999999998864 2245566777778889999999999999998875 5688899999999999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 84 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.. ..|+ ...+..+...+...|++++|.+.+.++
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----YNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998753 3567899999999999999999999999977 3455 456677888889999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQ 235 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 235 (505)
.+.. |.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 9875 5678899999999999999999999999875 345678999999999999999999999999874 34 467
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~ 313 (505)
++..+...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ .. +++..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8889999999999999999999999873 2335678999999999999999999999998 33 346889999999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|++++|...++++.+..|++..++..++..|.+.|++++|.+.++++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=250.39 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 12 EEGFYLFEKMRQKRIPTNPF-ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 45556677787777665544 58889999999999999999999999999999999999999999887653221
Q ss_pred CCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhH
Q 010642 91 IPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNL 170 (505)
Q Consensus 91 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 170 (505)
.+.+..++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~--~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIV--DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 223456888999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
|++||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999999999986 589999999999999999999999999999999999999999999998876
Q ss_pred c
Q 010642 247 C 247 (505)
Q Consensus 247 ~ 247 (505)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-25 Score=216.39 Aligned_cols=339 Identities=10% Similarity=-0.031 Sum_probs=299.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++++++.. +.+...+..+...|.+.|++++
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 4567899999999999998864 4477899999999999999999999999999875 4466789999999999999999
Q ss_pred HHHHHhcCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 010642 84 ACKLFDEIPQ--R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYIS 160 (505)
Q Consensus 84 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 160 (505)
|.+.|+++.+ | +...+..+...+...|++++|++.|+++.. . .+.+..++..+...+...|++++|...++++.
T Consensus 120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--T-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998754 3 566788899999999999999999999987 2 23457889999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
+.+ |.+...+..+...+...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+.+. .+..++
T Consensus 197 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 274 (388)
T 1w3b_A 197 TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAY 274 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 986 5678899999999999999999999998764 34678899999999999999999999999998532 246788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH 315 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 315 (505)
..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+...
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999874 4567789999999999999999999999998 5556 477899999999999
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
|++++|...++++.+..|..+..|..+...+...|+
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=211.33 Aligned_cols=355 Identities=7% Similarity=-0.059 Sum_probs=300.9
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++.+++.+ +.+..++..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999875 789999999999999999999999999999986 5577899999999999999999
Q ss_pred HHHHHhcCCCCC--------------------------------------------------------------------
Q 010642 84 ACKLFDEIPQRD-------------------------------------------------------------------- 95 (505)
Q Consensus 84 A~~~~~~~~~~~-------------------------------------------------------------------- 95 (505)
|...|+++...+
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999998763211
Q ss_pred --------------hhHHHHHHHHHHH---CCChhHHHHHHHHchh-----c--cCCC----CCCHHHHHHHHHHHHhcc
Q 010642 96 --------------TVAWNVLISCYIR---NQRTRDALCLFDNLNR-----E--ESGC----KPDDVTCLLVLQACAHLG 147 (505)
Q Consensus 96 --------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~--~~~~----~pd~~t~~~ll~~~~~~~ 147 (505)
...+..+...+.. .|++++|+..|+++.. . .... +.+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 2333344444443 8999999999999865 1 0110 223567788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGA 224 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (505)
++++|...++.+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999998633 88899999999999999999999997653 4677899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCCC
Q 010642 225 MQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKP 300 (505)
Q Consensus 225 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p 300 (505)
+...... +...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|
T Consensus 330 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 330 AKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 9986432 5678888999999999999999999999874 3345678899999999999999999999987 2222
Q ss_pred C----HHHHHHHHHHHHh---cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 301 D----STIWRTLLGACRI---HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 301 ~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+ ...|..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...+++..+..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2 4488889999999 9999999999999999999999999999999999999999999999988754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-23 Score=204.00 Aligned_cols=323 Identities=11% Similarity=-0.011 Sum_probs=265.8
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
...+...+.+..... +.+...+..+...+.+.|++++|..+++.+++.. +.+..++..+...|...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555666666543 3466788999999999999999999999999875 55788999999999999999999999998
Q ss_pred CCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH----HHHHHH------------HHHHHhccChHH
Q 010642 91 IPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD----VTCLLV------------LQACAHLGALEF 151 (505)
Q Consensus 91 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~----~t~~~l------------l~~~~~~~~~~~ 151 (505)
+.+ .+..+|..+...|.+.|++++|+..|+++.. ..|+. ..+..+ ...+...|++++
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 764 4678999999999999999999999999976 44543 454444 444888999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++...
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 6688899999999999999999999999875 357889999999999999999999999999874
Q ss_pred CCCCCHH-HHHHH------------HHHHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHHHHHHHHhcCChHHHH
Q 010642 229 GVFPDDQ-TFTGV------------LSACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 229 g~~p~~~-t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~ 290 (505)
.|+.. .+..+ ...+.+.|++++|..+|+++.+. .|+ ..++..+...+.+.|++++|.
T Consensus 241 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 241 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45443 33333 78899999999999999999874 343 347889999999999999999
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 291 QLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 291 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
+.++++ ...| +..+|..+..+|...|++++|...++++.+..|.++..+..+..+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999997 4445 688999999999999999999999999999999998888888744
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=199.67 Aligned_cols=342 Identities=12% Similarity=0.047 Sum_probs=276.4
Q ss_pred ccchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Q 010642 3 RAYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSF 82 (505)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (505)
..|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+...|.+.|+++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 45778999999999999999864 3467889999999999999999999999999986 457889999999999999999
Q ss_pred HHHHHHhcCCC--C-Ch---hHHHHHH------------HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ--R-DT---VAWNVLI------------SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 83 ~A~~~~~~~~~--~-~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
+|.+.|+++.+ | +. .+|..++ ..+.+.|++++|+..|+++.. ..+.+..++..+..++.
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHH
Confidence 99999998865 3 33 6666664 448999999999999999987 23457788999999999
Q ss_pred hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHH------------HHHH
Q 010642 145 HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAM------------ISGL 209 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l------------i~~~ 209 (505)
..|++++|.+.+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+...+..+ ...+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 66789999999999999999999999998752 344555555 7889
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPD-----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG 284 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 284 (505)
.+.|++++|+..|+++... .|+ ...+..+...+.+.|++++|...++++.+. .+.+...|..+..+|...|
T Consensus 268 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 268 IRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhc
Confidence 9999999999999999884 455 347888899999999999999999999863 2346788999999999999
Q ss_pred ChHHHHHHHHHC-CCCCC-HHHHHHHHHH------------HHhcC-----chhHHHHHHHH-HHHhcCCCCc-------
Q 010642 285 LLDQAYQLITSM-GVKPD-STIWRTLLGA------------CRIHK-----HVTLGERVIEH-LIELKAQESG------- 337 (505)
Q Consensus 285 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~------- 337 (505)
++++|.+.++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..|++..
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~ 423 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK 423 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHH
Confidence 999999999998 66675 4556555532 33334 56677888876 5555554322
Q ss_pred ---hHHHHHHHHHhCCCHHH
Q 010642 338 ---DYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 338 ---~~~~l~~~~~~~g~~~~ 354 (505)
.+..+..+|...|+.+.
T Consensus 424 a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 424 AEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 34455555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-21 Score=194.80 Aligned_cols=352 Identities=11% Similarity=0.006 Sum_probs=286.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+...|...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 4678999999999999999875 3477889999999999999999999999999987 5578899999999999999999
Q ss_pred HHHHHhcCCC-CChh-----------------------------------------------------------------
Q 010642 84 ACKLFDEIPQ-RDTV----------------------------------------------------------------- 97 (505)
Q Consensus 84 A~~~~~~~~~-~~~~----------------------------------------------------------------- 97 (505)
|...|+.+.. |+..
T Consensus 112 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 9999864421 1100
Q ss_pred ----HHHHHHHHHHH--------CCChhHHHHHHHHchhccCCCCCC--------HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 98 ----AWNVLISCYIR--------NQRTRDALCLFDNLNREESGCKPD--------DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 98 ----~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~pd--------~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
.+..+...+.. .|++++|+.+|+++.. ..|+ ..++..+...+...|++++|...+.
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS----ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11111111111 2478899999999876 3444 2356667778888999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD 234 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 234 (505)
.+.+.. |+..++..+...|...|++++|...|+++. ..+..+|..+...|...|++++|+..|+++...... +.
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 344 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV 344 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence 999975 448889999999999999999999999875 346788999999999999999999999999885322 45
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----C----CCCCHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----G----VKPDSTIWR 306 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~----~~p~~~~~~ 306 (505)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ + .......+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 78888999999999999999999999874 3445678899999999999999999999987 1 111233344
Q ss_pred HHHHHHHhc----------CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIH----------KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.+...+... |++++|...++++.+..|.++..+..+..+|.+.|++++|.+.+++..+..
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 555667777 999999999999999999999999999999999999999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-20 Score=187.04 Aligned_cols=361 Identities=12% Similarity=-0.007 Sum_probs=288.6
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCY 106 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 106 (505)
...+......+...|++++|...|+.+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3457777888999999999999999999986 6899999999999999999999999998753 4678999999999
Q ss_pred HHCCChhHHHHHHHHchhccCCCC--------------------------------------------------------
Q 010642 107 IRNQRTRDALCLFDNLNREESGCK-------------------------------------------------------- 130 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~~~~~~-------------------------------------------------------- 130 (505)
.+.|++++|+..|+++.. .+-.
T Consensus 84 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSL--NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHH--SSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999876 2210
Q ss_pred ---------------------C-CHHHHHHHHHHHHh---ccChHHHHHHHHHHHH-----cCC--------CCchhHHH
Q 010642 131 ---------------------P-DDVTCLLVLQACAH---LGALEFGEKIHRYISE-----HGY--------GSKMNLCN 172 (505)
Q Consensus 131 ---------------------p-d~~t~~~ll~~~~~---~~~~~~a~~i~~~~~~-----~~~--------~~~~~~~~ 172 (505)
| +...+......+.. .|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 0 12222333333333 7899999999999988 311 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
.+...|...|++++|...|+++. .|+...|..+...|...|++++|+..|+++..... .+...+..+...+...|++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 89999999999999999999875 34477889999999999999999999999987532 3567888899999999999
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999873 3345778889999999999999999999988 3333 5678888999999999999999999999
Q ss_pred HHhcCCCCc------hHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHH
Q 010642 329 IELKAQESG------DYVLLLNLYSS---VGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIY 399 (505)
Q Consensus 329 ~~~~~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (505)
.+..|.++. .+..++..|.. .|++++|...+++..+.. |+....+.. ....+...++.+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~-------la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIG-------LAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHH-------HHHHHHHTTCHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHH-------HHHHHHHhcCHHHHH
Confidence 998877755 89999999999 999999999999988753 221111100 011122446677777
Q ss_pred HHHHHHH
Q 010642 400 QMLDEIN 406 (505)
Q Consensus 400 ~~l~~l~ 406 (505)
..+++..
T Consensus 470 ~~~~~a~ 476 (514)
T 2gw1_A 470 TLFEESA 476 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=170.90 Aligned_cols=312 Identities=10% Similarity=-0.027 Sum_probs=223.2
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
|...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566777777888888888888888888775 44677888888888888888888888887653 366778888888
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCC----CHHHHHHH------------HHHHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKP----DDVTCLLV------------LQACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~p----d~~t~~~l------------l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
|...|++++|+..|++... ..| +...+..+ ...+...|++++|.+.+..+.+.. +.+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 8888888888888888866 445 33333333 466777888888888888888764 55677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHH-------
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-QTFT------- 238 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~------- 238 (505)
++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|++..+. .|+. ..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHH
Confidence 78888888888888888888887654 245667888888888888888888888887764 2332 2222
Q ss_pred -----HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 239 -----GVLSACSHCGLVDEGMMFLDRMSKDFGILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 239 -----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
.+...+.+.|++++|...++++.+.....+.. ..+..+...+.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 22455777788888888888777642111111 22445667777788888888887777 3334 566777777
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+...|++++|...++++.+..|.++..+..+..++..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 778888888888888888888877777666666655543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-19 Score=168.85 Aligned_cols=296 Identities=11% Similarity=0.033 Sum_probs=248.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
++..+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.. . .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA--L-KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--H-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h-CCCcchHHHHHH
Confidence 456778888899999999999999998753 4678999999999999999999999999987 2 233668889999
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCC---CchhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCChhHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYG---SKMNLCNSL------------IAMYSKCGSLGMAFEVFKGMP---EKDVVSW 202 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~l------------~~~y~~~g~~~~A~~~~~~m~---~~~~~~~ 202 (505)
..+...|++++|...++.+.+.. + .+...+..+ ...|...|++++|...|+++. ..+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999999999874 4 455556555 688999999999999999875 3567889
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH--------
Q 010642 203 SAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG-------- 274 (505)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------- 274 (505)
..+...|...|++++|+..++++.... +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHH
Confidence 999999999999999999999999863 3366788899999999999999999999998742 22223222
Q ss_pred ----HHHHHHHhcCChHHHHHHHHHC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 275 ----CVVDLLGRAGLLDQAYQLITSM-GVKPD-S----TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 275 ----~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|.++..+..+..
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2366789999999999999988 33444 2 234557788999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhCC
Q 010642 345 LYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 345 ~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|...|++++|.+.+++..+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999988653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=164.74 Aligned_cols=281 Identities=7% Similarity=-0.017 Sum_probs=139.8
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
+...+......+...|++++|.++++.+++.. +.+...+..++..+...|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34444555555555555555555555555543 22334444444555555555555555554432 234455555555
Q ss_pred HHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 106 YIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 106 ~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
+...| ++++|...|++... . .+.+...+..+...+...|++++|.+.+..+.+.. +.+...
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~-------------- 161 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATT--L-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLP-------------- 161 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHT--T-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHH--------------
T ss_pred HHHhhhhHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHH--------------
Confidence 55555 55555555555543 1 12223444455555555555555555555555443 222333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 185 GMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 185 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 162 -----------------~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 162 -----------------MLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp -----------------HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 4444444444444445554444444431 1123444444445555555555555555444321
Q ss_pred C-------CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 265 G-------ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 265 ~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
. .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 0 0222345555555555556666665555554 2222 34455555666666666666666666666666666
Q ss_pred CchHHHHHHHH
Q 010642 336 SGDYVLLLNLY 346 (505)
Q Consensus 336 ~~~~~~l~~~~ 346 (505)
+..+..+..++
T Consensus 304 ~~~~~~l~~~~ 314 (330)
T 3hym_B 304 TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55565665555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-18 Score=160.12 Aligned_cols=277 Identities=10% Similarity=0.034 Sum_probs=194.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-KSF 82 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 82 (505)
.+...|++++|+.+|+++.+... .+...+..++.++...|++++|...++.+++.. +.+..++..+...|...| +++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHH
Confidence 45678999999999999988643 355677778888999999999999999999876 457888999999999999 999
Q ss_pred HHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHH
Q 010642 83 EACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYI 159 (505)
Q Consensus 83 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~ 159 (505)
+|...|++..+ .+..+|..+...+...|++++|+..|+++... .+.+...+..+...+...|++++|.+.++++
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998754 36788999999999999999999999999872 2334577777888999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHH
Q 010642 160 SEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR-AGVFPDDQTFT 238 (505)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~ 238 (505)
.+.. +.+..++..+...|.+.|++++|...|++..+. ...... .....+..++.
T Consensus 186 l~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 186 LSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK------------------------IKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HTTTSCSCTTTTCCHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------hhhccccccccHHHHHHH
Confidence 8874 455666666777777777666666666543210 000000 00012234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
.+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. .+.| +...+..+..++
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555555555555555555555542 1223445555666666666666666666665 4444 344444444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=176.03 Aligned_cols=325 Identities=8% Similarity=-0.037 Sum_probs=254.6
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCY 106 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 106 (505)
...+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|++.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567788889999999999999999999986 56889999999999999999999999998754 4688999999999
Q ss_pred HHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC------CCCch------------
Q 010642 107 IRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG------YGSKM------------ 168 (505)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~------~~~~~------------ 168 (505)
...|++++|+..|+.+.. .|+... ..+..+...+....+...+..+.+.. ..|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-----NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHHhc-----CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999974422 233221 12233444455566777776664421 01111
Q ss_pred ------------------hHHHHHHHHHHhc--------CCHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhC
Q 010642 169 ------------------NLCNSLIAMYSKC--------GSLGMAFEVFKGMPEKD----------VVSWSAMISGLAMN 212 (505)
Q Consensus 169 ------------------~~~~~l~~~y~~~--------g~~~~A~~~~~~m~~~~----------~~~~~~li~~~~~~ 212 (505)
.....+...|... |++++|..+|+++.+.+ ..+|..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 1333333333322 47899999999876432 22566777888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|...|+++... .|+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999984 566788889999999999999999999999874 234577899999999999999999999
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 293 ITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 293 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
++++ ...| +...|..+...+...|++++|...++++.+..|.++..+..++..|...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9988 3334 467888999999999999999999999999999999999999999999999999999999987644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=165.90 Aligned_cols=279 Identities=10% Similarity=-0.028 Sum_probs=220.4
Q ss_pred HhCCCHHHHHH-HHhcCCC-----C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc
Q 010642 76 STFEKSFEACK-LFDEIPQ-----R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG 147 (505)
Q Consensus 76 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~ 147 (505)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.. . .+.+..++..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~-~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--Q-DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--S-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h-CCCCHHHHHHHHHHHHHCc
Confidence 34577888888 7775543 1 356688888999999999999999999877 2 3446678888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHH---------------HHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-DVVSWSA---------------MISGL 209 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~ 209 (505)
++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999998875 56788889999999999999999999987642 2 2222221 23334
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
...|++++|+..|+++....... +..++..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998753221 4788899999999999999999999999874 23456789999999999999999
Q ss_pred HHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-----------CchHHHHHHHHHhCCCHHHH
Q 010642 289 AYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-----------SGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 289 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 355 (505)
|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.+ ..+|..+..+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998 4444 57789999999999999999999999999988776 67899999999999999999
Q ss_pred HHHHH
Q 010642 356 KELRE 360 (505)
Q Consensus 356 ~~~~~ 360 (505)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98876
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=164.76 Aligned_cols=261 Identities=10% Similarity=-0.073 Sum_probs=212.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 5566888999999999999999999998772 34467888889999999999999999999998875 5668889999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCC-------------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKD-------------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PDDQTFTGV 240 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l 240 (505)
..+|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+..|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998875321 223344578899999999999999999885332 257889999
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCch
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 318 (505)
...+...|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999874 3445778999999999999999999999988 4445 478899999999999999
Q ss_pred hHHHHHHHHHHHhcCC------------CCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 319 TLGERVIEHLIELKAQ------------ESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++|...++++.+..|. +...|..|..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998765 356789999999999999999887654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=160.51 Aligned_cols=278 Identities=12% Similarity=-0.027 Sum_probs=156.0
Q ss_pred CCcHHHHH-HHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHH
Q 010642 44 CSLMGGLQ-IHARVLRDGYQ---LDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDAL 116 (505)
Q Consensus 44 ~~~~~a~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 116 (505)
|+++.|.. .+...++.... .+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 45555555 54444332210 1233455555556666666666666655432 24455666666666666666666
Q ss_pred HHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH----------------HHHHHHHh
Q 010642 117 CLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN----------------SLIAMYSK 180 (505)
Q Consensus 117 ~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~----------------~l~~~y~~ 180 (505)
..|+++.. . .+.+..++..+...+...|++++|...+..+.+.. +.+...+. .+...+ .
T Consensus 119 ~~~~~al~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 119 SALRRCLE--L-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHh--c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 66666554 1 12345555566666666666666666666665543 22222221 122223 6
Q ss_pred cCCHHHHHHHHhcCC--CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 181 CGSLGMAFEVFKGMP--EK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.|++++|...|+++. .| +..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666777776666553 12 35566666677777777777777777766542 1234566666677777777777777
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC------------CHHHHHHHHHHHHhcCchhHHH
Q 010642 256 FLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP------------DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
.|+++.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| ...+|..+..++...|+.++|.
T Consensus 273 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 77776653 1234556666777777777777777777665 1111 1567777777777777777777
Q ss_pred HHHHHHH
Q 010642 323 RVIEHLI 329 (505)
Q Consensus 323 ~~~~~~~ 329 (505)
.++++..
T Consensus 351 ~~~~~~l 357 (368)
T 1fch_A 351 AADARDL 357 (368)
T ss_dssp HHHTTCH
T ss_pred HhHHHHH
Confidence 7766543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-15 Score=150.71 Aligned_cols=337 Identities=12% Similarity=0.029 Sum_probs=278.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CC
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMK----FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FE 79 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 79 (505)
.+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+++..+.| +...+..|..+|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 688999999999998875 56677778888887 889999999999998865 56777788888888 78
Q ss_pred CHHHHHHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChH
Q 010642 80 KSFEACKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALE 150 (505)
Q Consensus 80 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~ 150 (505)
+.++|.+.|++..+ .+..++..|...|.. .+++++|++.|++... .+ +...+..+...+.. .++.+
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE--QG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 99999999988765 467788889988988 8899999999999877 43 67778888888877 88999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCChHHHHHH
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMISGLAM----NGHGRDAIES 221 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 221 (505)
+|.+.+.+..+.| ++..+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..
T Consensus 205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 9999999998875 46678888888886 7899999999988654 466777788888887 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC---ChHHHHHHH
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHC-----GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG---LLDQAYQLI 293 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~ 293 (505)
|++..+.| +...+..+...+... ++.++|...|++..+. + +...+..|...|.+.| ++++|.++|
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 99988764 455666677777776 8999999999998874 3 4456777888888766 789999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhC
Q 010642 294 TSMGVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEK 365 (505)
Q Consensus 294 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 365 (505)
++.--..+...+..|...+.. .+++++|...+++..+.+ ++..+..|..+|.. .+++++|...|++..+.
T Consensus 355 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 355 RKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 988212467888888888888 899999999999988865 46788899999998 89999999999999887
Q ss_pred CC
Q 010642 366 GL 367 (505)
Q Consensus 366 ~~ 367 (505)
+.
T Consensus 433 ~~ 434 (490)
T 2xm6_A 433 DM 434 (490)
T ss_dssp HC
T ss_pred CC
Confidence 64
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-16 Score=144.68 Aligned_cols=268 Identities=8% Similarity=-0.018 Sum_probs=215.2
Q ss_pred HHhCCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH
Q 010642 75 YSTFEKSFEACKLFDEIPQRD----TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE 150 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~ 150 (505)
....|++..|+..++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP------SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------cCChhHHHHHHHHHHHcCCCcHH
Confidence 456799999999998876543 23456678899999999999876543 24567788888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 151 FGEKIHRYISEHGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 151 ~a~~i~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
+|.+.++.+...+. |.+..++..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999999988764 55677888888999999999999999999 567889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHH
Q 010642 230 VFPDDQTF---TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTI 304 (505)
Q Consensus 230 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 304 (505)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3654321 12334445569999999999999984 4567788999999999999999999999997 4455 5778
Q ss_pred HHHHHHHHHhcCchhH-HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH
Q 010642 305 WRTLLGACRIHKHVTL-GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 305 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 358 (505)
+..++..+...|+.++ +.++++++.+..|.++.+ .+...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999999876 678999999999998653 3445555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=165.64 Aligned_cols=281 Identities=10% Similarity=0.080 Sum_probs=133.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010642 42 KFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDN 121 (505)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 121 (505)
..|++++|.+.++++ +++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788899988887 23358999999999999999999999764 5677899999999999999999997777
Q ss_pred chhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhH
Q 010642 122 LNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVS 201 (505)
Q Consensus 122 m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 201 (505)
.++ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+ ..
T Consensus 87 ark----~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARK----KARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TC
T ss_pred HHH----hCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 655 24567888899999999999999888774 467779999999999999999999999988 48
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLG 281 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 281 (505)
|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|......+ ...+.....++..|.
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHH
Confidence 999999999999999999999988 27889999999999999999996544432 223444557888999
Q ss_pred hcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc--CchhHHHHHHHHHHHhcC-----CCCchHHHHHHHHHhCCCH
Q 010642 282 RAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH--KHVTLGERVIEHLIELKA-----QESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 352 (505)
+.|++++|..+++.. +..+ ....|+-|.-++++. ++..+..+.|..-....| .+...|..+...|..-+++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999999887 5554 466777777777654 455556665554433334 4667899999999999999
Q ss_pred HHHHHH
Q 010642 353 EKVKEL 358 (505)
Q Consensus 353 ~~a~~~ 358 (505)
+.|..+
T Consensus 299 d~A~~t 304 (449)
T 1b89_A 299 DNAIIT 304 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-17 Score=155.31 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 010642 31 FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYI 107 (505)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 107 (505)
..+..+...+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|+..|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346666667777777777777777777664 34566677777777777777777777766543 34666777777777
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCH-----------HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCC--chhHHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDD-----------VTCLLVLQACAHLGALEFGEKIHRYISEHGYGS--KMNLCNSL 174 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~-----------~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~l 174 (505)
..|++++|+..|+++.. ..|+. ..+..+...+...|++++|.+.++++.+.. +. +..++..+
T Consensus 145 ~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIK----QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HTTCHHHHHHHHHHHHH----HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH----hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 77777777777777655 22221 122233555666666666666666666653 22 45566666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 250 (505)
...|.+.|++++|...|+++. ..+..+|+.+..+|.+.|++++|+..|+++.+. .| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence 666666666666666666543 234555666666666666666666666665553 22 244555555666666666
Q ss_pred HHHHHHHHHHhh
Q 010642 251 DEGMMFLDRMSK 262 (505)
Q Consensus 251 ~~a~~~~~~~~~ 262 (505)
++|...|+++.+
T Consensus 298 ~~A~~~~~~al~ 309 (365)
T 4eqf_A 298 REAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=151.11 Aligned_cols=277 Identities=11% Similarity=0.090 Sum_probs=86.3
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 010642 8 SSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKL 87 (505)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (505)
.|+.++|.++++++. ++.+|..+..++.+.|++++|.+.|.+ .+|...|..++..+...|++++|++.
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 455566666666551 223566666666666666666665533 13445556666666666666666665
Q ss_pred HhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCC
Q 010642 88 FDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYG 165 (505)
Q Consensus 88 ~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 165 (505)
++...+ +++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 84 l~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp -------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 544433 234555566666666666666554442 144446666666666666666666666544
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
..|..|++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+. ...++..|.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Ye 218 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQ 218 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHH
Confidence 245566666666666666666666552 55666666666666666666644333211 22222 334555566
Q ss_pred ccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh--cCChHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcC
Q 010642 246 HCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR--AGLLDQAYQLITSM-GVKP------DSTIWRTLLGACRIHK 316 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g 316 (505)
+.|.+++|..+++..... -+.....|+-|..+|++ .+++.+.++.|..- .++| +...|.-+...|...+
T Consensus 219 k~G~~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666655421 12223445555555543 23344444444322 3222 2334555555566666
Q ss_pred chhHHHH
Q 010642 317 HVTLGER 323 (505)
Q Consensus 317 ~~~~a~~ 323 (505)
+++.|..
T Consensus 297 e~d~A~~ 303 (449)
T 1b89_A 297 EYDNAII 303 (449)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 6655543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=153.09 Aligned_cols=259 Identities=8% Similarity=-0.055 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
..|..+...+...|++++|+.+|+++... .+.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34555566666666666666666666551 22345555666666666666666666666666653 445566666666
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPE---KDVVSWSAM--------------IS-GLAMNGHGRDAIESFGAMQRAGVFPDDQTFT 238 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 238 (505)
.|...|++++|...|+++.+ .+...+..+ .. .+...|++++|...++++.+... .+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 66666666666666665432 122222222 22 36778889999999999987532 2677888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
.+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999874 2345678889999999999999999999987 3334 5778999999999999
Q ss_pred chhHHHHHHHHHHHhcCC------------CCchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 317 HVTLGERVIEHLIELKAQ------------ESGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
++++|...++++.+..|. +...+..+..+|.+.|++++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999888 6778999999999999999999988643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-14 Score=142.06 Aligned_cols=365 Identities=12% Similarity=0.020 Sum_probs=289.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CCCHHHH
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMK----FCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FEKSFEA 84 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 84 (505)
.++..+....+.| +...+..+...+.. .+++++|...+++..+.| +...+..|..+|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3466666666654 66777778888877 899999999999998875 56788889999998 8999999
Q ss_pred HHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChHHHHHH
Q 010642 85 CKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALEFGEKI 155 (505)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~i 155 (505)
.+.|++..+ .+..++..|...|.. .+++++|+..|++... .+ +...+..+...+.. .++.++|.+.
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998765 477888999999998 8999999999999977 44 56677778888876 7899999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChhHHHHHHHHHHh----CCChHHHHHHHHHHH
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMP-EKDVVSWSAMISGLAM----NGHGRDAIESFGAMQ 226 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 226 (505)
+++..+.| ++..+..|..+|.. .+++++|...|++.. ..+..++..+...|.. .+++++|..+|++..
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99999875 67788899999998 899999999999865 3467788888888886 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc-----CChHHHHHHHHHCC
Q 010642 227 RAGVFPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA-----GLLDQAYQLITSMG 297 (505)
Q Consensus 227 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~ 297 (505)
+.| +...+..+...+.. .++.++|..+|++..+. + +...+..|..+|... +++++|.+++++.-
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 764 45566666667766 89999999999999864 3 455777888888887 89999999999882
Q ss_pred CCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCC
Q 010642 298 VKPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKGLQTT 370 (505)
Q Consensus 298 ~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~ 370 (505)
-..+...+..|...+...| +.++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|...
T Consensus 324 ~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~- 400 (490)
T 2xm6_A 324 EQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSA- 400 (490)
T ss_dssp HTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-
T ss_pred hcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHH-
Confidence 1235667777877777756 8999999999998874 56789999999999 899999999999998876321
Q ss_pred CceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHH
Q 010642 371 PGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINK 407 (505)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 407 (505)
. ... -+.+ +..|....+..+++...+++...
T Consensus 401 a-~~~---Lg~~--y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 401 A-QVQ---LGEI--YYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp H-HHH---HHHH--HHHTSSSCCCHHHHHHHHHHHHH
T ss_pred H-HHH---HHHH--HHcCCCCCCCHHHHHHHHHHHHH
Confidence 1 100 0100 11233345777788877766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=151.04 Aligned_cols=331 Identities=9% Similarity=-0.062 Sum_probs=227.7
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-------
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRD-----G---YQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ------- 93 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 93 (505)
....|+.+...+...|+.++|++.+++.++. + -+....+|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888999999999999999988653 1 122456788999999999999999988876531
Q ss_pred ----CChhHHHHHHHHHHHC--CChhHHHHHHHHchhccCCCCCC-HHHHHHHHHH---HHhccChHHHHHHHHHHHHcC
Q 010642 94 ----RDTVAWNVLISCYIRN--QRTRDALCLFDNLNREESGCKPD-DVTCLLVLQA---CAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 94 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~pd-~~t~~~ll~~---~~~~~~~~~a~~i~~~~~~~~ 163 (505)
....+++.+..++.+. +++++|+..|++... +.|+ ...+..+..+ +...++.++|.+.++++++..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1345677776666654 568999999999877 4454 3444444443 345577788889999888875
Q ss_pred CCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HH
Q 010642 164 YGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQ 235 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 235 (505)
+.+..++..+...+.. .|++++|.+.|++.. ..+...+..+...|...|++++|+..|++..+. .|+ ..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 5566677666665554 457788999998754 456778899999999999999999999999874 444 45
Q ss_pred HHHHHHHHHhc-------------------cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 236 TFTGVLSACSH-------------------CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 236 t~~~ll~~~~~-------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
++..+..+|.. .+..++|...++...+. .+.+...+..+...|...|++++|.+.|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 55555554432 12356777888877753 2345678889999999999999999999987
Q ss_pred -CCCCCHHH----HHHHHH-HHHhcCchhHHHHHHHHHHHh------------------------cCCCCchHHHHHHHH
Q 010642 297 -GVKPDSTI----WRTLLG-ACRIHKHVTLGERVIEHLIEL------------------------KAQESGDYVLLLNLY 346 (505)
Q Consensus 297 -~~~p~~~~----~~~ll~-~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~ 346 (505)
...|+... +..+.. .....|++++|+..+++.++. .|.++.+|..|..+|
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44454332 222222 234678888888888776544 467788999999999
Q ss_pred HhCCCHHHHHHHHHHHHhCCCC
Q 010642 347 SSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
...|++++|.+.|++..+.+-.
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHCC---------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999998876643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=147.54 Aligned_cols=260 Identities=12% Similarity=-0.013 Sum_probs=178.7
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 29 NPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISC 105 (505)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 105 (505)
+...+......+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556777888889999999999999998876 45778888888999999999999999987753 467788889999
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHH--------------HH-HHHhccChHHHHHHHHHHHHcCCCCchh
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLV--------------LQ-ACAHLGALEFGEKIHRYISEHGYGSKMN 169 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~l--------------l~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 169 (505)
|...|++++|+..|+++.. ..|+. ..+..+ .. .+...|++++|...+..+.+.. +.+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHH----TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 9999999999999999876 22332 222222 12 2566777788888888777764 44667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH 246 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 246 (505)
++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 77777777777777777777777653 2345666777777777777777777777766542 1245566666666777
Q ss_pred cCCHHHHHHHHHHHhhhcCCcC----------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFGILP----------NIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
.|++++|...++++.+...... +...+..+..++.+.|++++|..++++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777777777766654311000 234555555666666666666655544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-16 Score=143.75 Aligned_cols=247 Identities=8% Similarity=0.025 Sum_probs=204.1
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~ 180 (505)
|.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcC
Confidence 4456778999999999988743 55554 3556778999999999999876543 246778889999999999
Q ss_pred cCCHHHHHHHHhcCC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010642 181 CGSLGMAFEVFKGMP----EK-DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMM 255 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 255 (505)
.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999863 24 566777888999999999999999987 4567788899999999999999999
Q ss_pred HHHHHhhhcCCcCCcch---HHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 256 FLDRMSKDFGILPNIHH---YGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 256 ~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
.|+++.+. .|+... ..+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999875 355321 123445555669999999999998 3334788999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHhCCCHHH-HHHHHHHHHhCC
Q 010642 331 LKAQESGDYVLLLNLYSSVGDWEK-VKELREFMNEKG 366 (505)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 366 (505)
..|.++.++..++..+...|+.++ +.++++++.+..
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999976 578888887643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-14 Score=144.79 Aligned_cols=390 Identities=9% Similarity=-0.009 Sum_probs=253.3
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhCCCHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDL-YSTFEKSFE 83 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~ 83 (505)
+.+.|++++|..+|+++++.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++.. ....|+.+.
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 356789999999999999863 3366788999999999999999999999998764 577778777753 335676666
Q ss_pred HHH----HHhcCC------CCChhHHHHHHHHHHH---------CCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH-
Q 010642 84 ACK----LFDEIP------QRDTVAWNVLISCYIR---------NQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC- 143 (505)
Q Consensus 84 A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~- 143 (505)
|.+ +|+... .++...|...+....+ .|++++|..+|++... ....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~--~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV--NPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT--SCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHH
Confidence 554 666542 2356788888776655 6889999999999866 21111123333222111
Q ss_pred ------------HhccChHHHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc----CCH----HH
Q 010642 144 ------------AHLGALEFGEKIHRYIS------EHG---YGSK--------MNLCNSLIAMYSKC----GSL----GM 186 (505)
Q Consensus 144 ------------~~~~~~~~a~~i~~~~~------~~~---~~~~--------~~~~~~l~~~y~~~----g~~----~~ 186 (505)
...+++..|..++.... +.. ++|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 12345666666665532 111 2333 23454444333222 222 36
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHh-------CCChH-------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 010642 187 AFEVFKGMP---EKDVVSWSAMISGLAM-------NGHGR-------DAIESFGAMQRAGVFP-DDQTFTGVLSACSHCG 248 (505)
Q Consensus 187 A~~~~~~m~---~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 248 (505)
|..+|++.. ..+...|..++..+.+ .|+.+ +|..+|++..+. +.| +...+..++..+.+.|
T Consensus 257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcC
Confidence 667777665 2466778877777765 68876 788888887752 234 4567777788888888
Q ss_pred CHHHHHHHHHHHhhhcCCcCCc--chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHH-HHhcCchhHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNI--HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGA-CRIHKHVTLGER 323 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 323 (505)
++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|+.+.|..
T Consensus 336 ~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp CHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 888888888888763 4432 46788888888888888888888887 43343 2222222211 335788888888
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCC-CceeEEEECCEEEEEEecCCCCcchHHHHHH
Q 010642 324 VIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGL-QTT-PGCSTIGLKGVVHEFVVDDVSHPRINEIYQM 401 (505)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
+|++.++..|.++..+..++..+.+.|+.++|..+|++....+- .|. ....|..+- .|............+...
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~----~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL----AFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH----HHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888877642 221 111121000 112223345666677776
Q ss_pred HHHHHH
Q 010642 402 LDEINK 407 (505)
Q Consensus 402 l~~l~~ 407 (505)
..+.+.
T Consensus 489 ~~~~~p 494 (530)
T 2ooe_A 489 RFTAFR 494 (530)
T ss_dssp HHHHTH
T ss_pred HHHHCc
Confidence 666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=171.76 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP-------EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4456666666666666666666664432 456666666666666666666666666666666666666666666
Q ss_pred HHHHhccCC-HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 241 LSACSHCGL-VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 241 l~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence 666666665 35566666666665 6666666666666555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-14 Score=141.62 Aligned_cols=341 Identities=11% Similarity=0.032 Sum_probs=246.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC
Q 010642 18 FEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD 95 (505)
Q Consensus 18 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 95 (505)
|++.++.. +-|...|..++.. .+.|++++|..+++.+++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44444443 2367788888884 77899999999999998764 66788999999999999999999999999875 67
Q ss_pred hhHHHHHHH-HHHHCCChhHHHH----HHHHchhccCCCCC-CHHHHHHHHHHHHh---------ccChHHHHHHHHHHH
Q 010642 96 TVAWNVLIS-CYIRNQRTRDALC----LFDNLNREESGCKP-DDVTCLLVLQACAH---------LGALEFGEKIHRYIS 160 (505)
Q Consensus 96 ~~~~~~li~-~~~~~g~~~~A~~----~~~~m~~~~~~~~p-d~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~ 160 (505)
+..|...+. .....|+.++|.+ +|++.... .|..| +...|...+..... .|+++.|..+|++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 778888775 3345688777665 77776542 35544 44566666665544 688999999999999
Q ss_pred HcCCCCchhHHHHHHHHH-------------HhcCCHHHHHHHHhc-------CC------CCC--------hhHHHHHH
Q 010642 161 EHGYGSKMNLCNSLIAMY-------------SKCGSLGMAFEVFKG-------MP------EKD--------VVSWSAMI 206 (505)
Q Consensus 161 ~~~~~~~~~~~~~l~~~y-------------~~~g~~~~A~~~~~~-------m~------~~~--------~~~~~~li 206 (505)
+........+|....... .+.++++.|..++.. +. .|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 832111123443332211 134567778776654 11 122 24666665
Q ss_pred HHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHhhhc
Q 010642 207 SGLAMN----GHG----RDAIESFGAMQRAGVFPDDQTFTGVLSACSH-------CGLVD-------EGMMFLDRMSKDF 264 (505)
Q Consensus 207 ~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~ 264 (505)
...... ++. .+|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~-- 314 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS-- 314 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--
Confidence 443332 232 47888999988742 2255677777777664 79987 99999999986
Q ss_pred CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-H-HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 265 GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-S-TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 265 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.+.| +...|..++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+++.|..+|+++.+..|.+...|.
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 394 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence 3345 5778899999999999999999999998 55664 3 58999999999999999999999999998777666666
Q ss_pred HHHHH-HHhCCCHHHHHHHHHHHHhC
Q 010642 341 LLLNL-YSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 341 ~l~~~-~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+.. +...|+.++|..+|++..+.
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 55444 34699999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-17 Score=167.17 Aligned_cols=148 Identities=13% Similarity=0.079 Sum_probs=126.7
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIP-------QRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTC 136 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~ 136 (505)
-..+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.. .|+.||.+||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~--~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD--AGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCcHHHH
Confidence 34689999999999999999999997753 58999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhccCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----ChhHHHHHHHHHH
Q 010642 137 LLVLQACAHLGAL-EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-----DVVSWSAMISGLA 210 (505)
Q Consensus 137 ~~ll~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~ 210 (505)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+..+ .+.+.+.|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999999888877777766665555421 2334445556666
Q ss_pred hCC
Q 010642 211 MNG 213 (505)
Q Consensus 211 ~~g 213 (505)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=132.10 Aligned_cols=225 Identities=11% Similarity=-0.020 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 97 VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
..|..+...+...|++++|+..|++..+ .. ++..++..+..++...|++++|...+..+.+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------- 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE--LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM-------- 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc--------
Confidence 3455555555555555555555555555 22 444555555555555555555555555544431 000
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 177 MYSKCGSLGMAFEVFKGMPEKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 177 ~y~~~g~~~~A~~~~~~m~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
.++ ...|..+...|...|++++|+..|++.... .|+. ..+...|++++
T Consensus 72 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 72 -------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp -------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred -------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHH
Confidence 001 345566666666777777777777776653 3442 23445567777
Q ss_pred HHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 253 GMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 253 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
|...++.+.. ..+.+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++.+
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777765 22334556777777788888888888888777 2233 567788888888888888888888888888
Q ss_pred hcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 331 LKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|.++..+..+...|...|++++|...+++..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-13 Score=143.93 Aligned_cols=318 Identities=14% Similarity=0.082 Sum_probs=226.2
Q ss_pred cccchhcCCchHHHHHHHHHHhCCC--CCChhhHHHHHHH---------------------------HHccCCcHHHHHH
Q 010642 2 VRAYSMSSSPEEGFYLFEKMRQKRI--PTNPFACSFAIKC---------------------------CMKFCSLMGGLQI 52 (505)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~---------------------------~~~~~~~~~a~~~ 52 (505)
+.+|..+|.+.+|++++++....+- .-+...-+.++.+ |...|.+++|.++
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 4578899999999999999985421 0122233333332 3344555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC
Q 010642 53 HARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD 132 (505)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd 132 (505)
|++. + ......+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|
T Consensus 1072 YkKa---~--~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD 1133 (1630)
T 1xi4_A 1072 FRKF---D--VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DD 1133 (1630)
T ss_pred HHHc---C--CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC
Confidence 5543 1 1111112222 24556666666666553 4677888889999999999999988654 35
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN 212 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 212 (505)
...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|..+...|...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhc
Confidence 6778888889999999999999998877764 44444556888899988888654443 355667777788888899
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|...
T Consensus 1209 g~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred CCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999998874 368888888999999999988888763 457888888888888888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC--CCHHHHHHHHH
Q 010642 293 ITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV--GDWEKVKELRE 360 (505)
Q Consensus 293 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 360 (505)
...+ ..++..+..++..|...|.+++|+.+++..+.+++.+...|.-|...|++- ++..++.+.|.
T Consensus 1273 gl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1273 GLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7653 345566678888899999999999999999888888878887777777654 33444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-13 Score=143.84 Aligned_cols=310 Identities=11% Similarity=0.099 Sum_probs=244.7
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.+++ .++.+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 35678999999999998631 1222333333 667899999988755 357899999999999999999
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
|+..|.+. .|...|..++..+.+.|++++|.+.|...++ .. +++...+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk--~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK--KA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 99999765 6788899999999999999999999998876 33 44333445888999999988654442 2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
.++...+..+.+.|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|..+-.+
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 345566778999999999999999999986 48999999999999999999999987 366899999999
Q ss_pred HhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc--Cchh
Q 010642 244 CSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIH--KHVT 319 (505)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~--g~~~ 319 (505)
|...|++..|......+. .++..+..++..|.+.|.+++|..+++.. ++.|. ...|+-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999999988765432 35667789999999999999999999877 66553 44665566665544 5566
Q ss_pred HHHHHHHHHHHhcC-----CCCchHHHHHHHHHhCCCHHHHHH
Q 010642 320 LGERVIEHLIELKA-----QESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 320 ~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
++.+.|..-....+ .+...|.-++..|.+.|+++.|..
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666665444333 345678999999999999999984
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=132.85 Aligned_cols=223 Identities=9% Similarity=-0.011 Sum_probs=140.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCL 137 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~ 137 (505)
....+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..|++.........|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 346788889999999999999999987643 678899999999999999999999999987621112222 46777
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCC
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGH 214 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 214 (505)
.+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888888888888888888764 33 12344445555555555544322 22334444444445555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
+++|+..|++..... +.+...+..+...|.+.|++++|.+.++
T Consensus 155 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-------------------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555554444321 1233444445555555555555555555
Q ss_pred HC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 295 SM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 295 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+. ...| +...|..+...+...|++++|...++++.+..
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 44 2222 34555556666666666666666666666655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-14 Score=141.32 Aligned_cols=332 Identities=11% Similarity=-0.025 Sum_probs=217.0
Q ss_pred cchhcCCchHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhC------C-CCChhHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQK-----R--IPT-NPFACSFAIKCCMKFCSLMGGLQIHARVLRDG------Y-QLDSQLM 68 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~ 68 (505)
.|...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++++++.. . .....++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 355789999999999987642 1 122 34688999999999999999999999887631 1 1234566
Q ss_pred HHHHHHHHh--CCCHHHHHHHHhcCCC---CChhHHHHHHHH---HHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHH
Q 010642 69 TTLMDLYST--FEKSFEACKLFDEIPQ---RDTVAWNVLISC---YIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLV 139 (505)
Q Consensus 69 ~~li~~~~~--~g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~l 139 (505)
..+..++.+ .+++++|+..|++..+ .+...+..+..+ +...++.++|++.|++... +.| +..++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~----l~p~~~~~~~~l 215 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR----LNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH----HCSSCHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh----cCCcchHHHHHH
Confidence 655555554 4579999999998753 356666666555 4556888999999998876 334 45556555
Q ss_pred HHHHHh----ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 140 LQACAH----LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 140 l~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...+.. .+++++|.+.++++.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 555544 457789999999998875 6678889999999999999999999999875 23556676666655432
Q ss_pred -------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc--c
Q 010642 213 -------------------GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI--H 271 (505)
Q Consensus 213 -------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~ 271 (505)
+..++|...|++...... .+..++..+...+...|++++|...|++..+. ...|.. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~ 372 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQL 372 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHH
Confidence 235677888887776432 23456777888999999999999999998763 222221 1
Q ss_pred hHHHHHH-HHHhcCChHHHHHHHHHC-CC------------------------CC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010642 272 HYGCVVD-LLGRAGLLDQAYQLITSM-GV------------------------KP-DSTIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 272 ~~~~li~-~~~~~g~~~~A~~~~~~~-~~------------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
.+..+.. .+...|++++|...|++. .+ .| +..+|..|...+...|++++|++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2233332 234678899998888765 22 23 456888899999999999999999
Q ss_pred HHHHHHhcCCCCchHHHH
Q 010642 325 IEHLIELKAQESGDYVLL 342 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l 342 (505)
++++++.+|.+|.++..+
T Consensus 453 y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 453 SERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------------------
T ss_pred HHHHHhcCCCCCcHhhcC
Confidence 999999998777655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=131.40 Aligned_cols=241 Identities=9% Similarity=-0.060 Sum_probs=181.3
Q ss_pred HCCChhHHHHHHHHchhccCCC--C-CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 108 RNQRTRDALCLFDNLNREESGC--K-PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~--~-pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
..|++++|+..|+++.. ... + .+..++..+...+...|++++|...+.++.+.. +.+..++..+...|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILA--SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHT--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHh--cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 35678888888888866 321 1 135567777788888888888888888888775 55677888888888888888
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 185 GMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 185 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
++|...|++.. ..+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888765 346778888889999999999999999998874 4555555555556677799999999998887
Q ss_pred hhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 262 KDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 262 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.. .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++.+..|.+
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 63 33444444 4777788888889999999887 33332 4678888899999999999999999999998876
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHH
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELR 359 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~ 359 (505)
...+ ..++...|++++|.+.+
T Consensus 249 ~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHH---HHHHHHHHHHHHC----
T ss_pred HHHH---HHHHHHHHHHHhhHHHH
Confidence 4443 56777888888887765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=127.60 Aligned_cols=195 Identities=11% Similarity=-0.022 Sum_probs=139.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGV 240 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 240 (505)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 44556666677777777777777777776532 35566777777777777777777777777764 33 34566677
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHH
Q 010642 241 LSACSHC-----------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTL 308 (505)
Q Consensus 241 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 308 (505)
...+... |++++|...+++..+. .+-+...+..+...|...|++++|...|++. .+..+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7777777 8999999999988863 2234667888888999999999999999887 212678889999
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
..++...|++++|...++++.+..|.++..+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-14 Score=129.80 Aligned_cols=243 Identities=11% Similarity=-0.099 Sum_probs=181.1
Q ss_pred cchhcCCchHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIP---TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK 80 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (505)
.+...|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 345678899999999999986422 245678888889999999999999999999886 4578889999999999999
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHH
Q 010642 81 SFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 81 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
+++|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.. ..|+.......+..+...|++++|...+.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999988754 4678899999999999999999999999977 44555555555666677799999999998
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 158 YISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKD-------VVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
...... +++...+. ++..+...++.++|...+++..+.+ ...|..+...|...|++++|...|++....
T Consensus 169 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-- 244 (275)
T ss_dssp HHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 887764 44444443 7777778888888888888776543 356677777777777777777777777764
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 231 FPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.|+.. .....++...|++++|.+.+
T Consensus 245 ~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 34221 12233455556666665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-14 Score=128.44 Aligned_cols=247 Identities=9% Similarity=-0.001 Sum_probs=142.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--HHHHHHHHHH
Q 010642 68 MTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--DVTCLLVLQA 142 (505)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--~~t~~~ll~~ 142 (505)
+......+...|++++|+..|++..+ .+..+|..+...|...|++++|+..|++... ....|+ ..+|..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS--KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHH
Confidence 44455566677777777777776543 2455677777777777777777777777755 222222 2336666677
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHH-HHHHhCCChHHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMI-SGLAMNGHGRDA 218 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li-~~~~~~g~~~~A 218 (505)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+. ..|. .+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777777777777654 44556667777777777777777777766553 2344555555 3333 3466666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHH
Q 010642 219 IESFGAMQRAGVFPD-DQTFTGVLSACSHCGL---VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLIT 294 (505)
Q Consensus 219 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 294 (505)
.+.|+++.+. .|+ ...+..+...+...|+ .++|...+++..+...-.|+.. -.
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~-------------------- 218 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD-------------------- 218 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH--------------------
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH--------------------
Confidence 6666666553 222 3344444444444444 4445554444443211111110 00
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
....+|..+...+...|++++|...++++.+..|.++.....+....
T Consensus 219 -----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 219 -----ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 00235566667777778888888888888887777766555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=122.51 Aligned_cols=193 Identities=13% Similarity=0.018 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...|..+...+.+.|++++|+..|++..+ --+.+...+..+..++.+.|++++|...++++++.. |.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 334455555555555555555555555544 122234445555555555555555555555555543 3344555555
Q ss_pred HHHHHhc-----------CCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 175 IAMYSKC-----------GSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 175 ~~~y~~~-----------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
..+|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 5555555 55555555555443 1234455555555555666666666666555544 445555555
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
..++...|++++|...|++..+. .+.+...+..+...+.+.|++++|.+.+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555666666666666655542 122334455555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-13 Score=121.19 Aligned_cols=205 Identities=8% Similarity=-0.023 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...|..+...+...|++++|+..|+++.. . .+.+..++..+...+...|++++|.+.+.++.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE--I-DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--c-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 45566666677777777777777776655 1 22345555566666666666666666666665553 33344444444
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 010642 176 AMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 176 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 254 (505)
..|.+.|++++|...|++ +...+..|+ ...+..+...+...|++++|.
T Consensus 113 ~~~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLE-------------------------------ASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------------------HTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH-------------------------------HHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444 333112222 233344444444555555555
Q ss_pred HHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 255 MFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..++++.+. .+.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 162 EYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 555554432 1122344445555555555555555555554 2222 34455555555666666666666666666666
Q ss_pred CCCCc
Q 010642 333 AQESG 337 (505)
Q Consensus 333 ~~~~~ 337 (505)
|.++.
T Consensus 240 p~~~~ 244 (252)
T 2ho1_A 240 PGSLE 244 (252)
T ss_dssp TTSHH
T ss_pred CCCHH
Confidence 55543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.9e-13 Score=116.94 Aligned_cols=196 Identities=8% Similarity=-0.111 Sum_probs=82.7
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC-C
Q 010642 138 LVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN-G 213 (505)
Q Consensus 138 ~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g 213 (505)
.+...+...|++++|.+.+..+.+.. +.+..++..+...|...|++++|...|+++. ..+..+|..+...|... |
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 33333333444444444443333332 2223333333334444444444444333322 12233444444444444 4
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
++++|...|+++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555444444222222 233444444455555555555555554432 111233444444444455555555544
Q ss_pred HHHC-CCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 293 ITSM-GVK--PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 293 ~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
++++ ... .+...+..+...+...|+.+.+..+++.+.+..|.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 4444 111 2333444444444555555555555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-13 Score=129.09 Aligned_cols=246 Identities=10% Similarity=0.046 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccC-hHHHHHHHHHHHHcCCCCchhHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGA-LEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
+..+|+.+...+.+.|++++|+..|++... +.| +...|..+..++...|+ +++|...++++++.. +.+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 356788899999999999999999999987 344 46778888889999996 999999999999986 66788999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cC
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH-CG 248 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g 248 (505)
.+..+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999876 357788999999999999999999999999985433 56788888888888 56
Q ss_pred CHHHH-----HHHHHHHhhhcCCcCCcchHHHHHHHHHhcC--ChHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC----
Q 010642 249 LVDEG-----MMFLDRMSKDFGILPNIHHYGCVVDLLGRAG--LLDQAYQLITSMGVKP-DSTIWRTLLGACRIHK---- 316 (505)
Q Consensus 249 ~~~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g---- 316 (505)
..++| +..+++.... .+-+...|..+...|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 65777 4778887763 2234667888888888888 6899999988874455 4667888888888764
Q ss_pred ----c-hhHHHHHHHHH-HHhcCCCCchHHHHHHHHHh
Q 010642 317 ----H-VTLGERVIEHL-IELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 317 ----~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 348 (505)
+ .++|..+++++ .+.+|.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 89999888888877776644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-12 Score=120.53 Aligned_cols=228 Identities=6% Similarity=-0.126 Sum_probs=184.7
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhHHHHHH
Q 010642 30 PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--RD----TVAWNVLI 103 (505)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li 103 (505)
...+......+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ ++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788899999999999999999876 44666888899999999999999999987754 22 33589999
Q ss_pred HHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcC
Q 010642 104 SCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI-AMYSKCG 182 (505)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~-~~y~~~g 182 (505)
..|...|++++|+..|++.... .+.+..++..+...+...|++++|...++++.+.. +.+..++..+. ..|. .+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~ 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NK 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHcccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HH
Confidence 9999999999999999999872 23456789999999999999999999999998874 56778888888 5555 56
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccCC
Q 010642 183 SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGH---GRDAIESFGAMQRAG-VFPDD------QTFTGVLSACSHCGL 249 (505)
Q Consensus 183 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~ 249 (505)
++++|...|+++. ..+...|..+...+...|+ +++|...|++..+.. -.|+. ..|..+...|...|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999999875 3356778888888888888 888999999987642 22331 466777788888889
Q ss_pred HHHHHHHHHHHhhh
Q 010642 250 VDEGMMFLDRMSKD 263 (505)
Q Consensus 250 ~~~a~~~~~~~~~~ 263 (505)
+++|...|++..+.
T Consensus 237 ~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 237 KVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888888763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-13 Score=119.18 Aligned_cols=195 Identities=9% Similarity=-0.095 Sum_probs=157.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHH
Q 010642 65 SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.. . .+.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--S-DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-CcCcHHHHHHHHH
Confidence 57788899999999999999999998753 4778899999999999999999999999977 2 2346788888999
Q ss_pred HHHhccChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
.+...|++++|.++++.+.+.+. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988322 3356778888888888888888888888764 3356677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 218 AIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 218 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|...|+++.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888877642 234556677777777888888888888887764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=123.77 Aligned_cols=205 Identities=10% Similarity=0.056 Sum_probs=104.3
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333334444444444444444444332 2233444444444444444444444444332 12344455555555556
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQL 292 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 292 (505)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666555432 123445555566666666666666666666542 122344556666666666666666666
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 293 ITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 293 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 6665 2222 45566667777777777777777777777777766655554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=116.03 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4467788999999999999999999999765 3467789999999999999999999999998753 23567888899
Q ss_pred HHHhcc-CCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc
Q 010642 242 SACSHC-GLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH 317 (505)
Q Consensus 242 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 317 (505)
..+... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 9999999999999872 34443 567888999999999999999999988 3344 47788999999999999
Q ss_pred hhHHHHHHHHHHHhcC-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 318 VTLGERVIEHLIELKA-QESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+++|...++++.+..| .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999 88888989999999999999999999998754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-12 Score=116.39 Aligned_cols=224 Identities=10% Similarity=-0.010 Sum_probs=132.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHcCCCCchhH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALEFGEKIHRYISEHGYGSKMNL 170 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~ 170 (505)
+..++..+...|...|++++|+..|++..+ . .+..++..+...+.. .+++++|...+++..+.+ ++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555566666666666666666666544 2 233455555555555 666666666666666554 4455
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010642 171 CNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMISGLAM----NGHGRDAIESFGAMQRAGVFPDDQTFTGVL 241 (505)
Q Consensus 171 ~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 241 (505)
+..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5556666666 6666666666655432 244556666666666 666666666666666644 344555555
Q ss_pred HHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh----cCChHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 010642 242 SACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR----AGLLDQAYQLITSM-GVKPDSTIWRTLLGAC 312 (505)
Q Consensus 242 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 312 (505)
..+.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ...| ...+..+...+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 55555 66677777777666653 2 33455556666666 66666666666665 2222 45555566666
Q ss_pred Hh----cCchhHHHHHHHHHHHhcCC
Q 010642 313 RI----HKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 313 ~~----~g~~~~a~~~~~~~~~~~~~ 334 (505)
.. .+++++|...+++..+.+|+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66 66677777777776666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=134.12 Aligned_cols=261 Identities=9% Similarity=-0.027 Sum_probs=162.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCC-H----HHHHHHHHHHHhccChHHHHHHHHHHHHc----C-CCCchhH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPD-D----VTCLLVLQACAHLGALEFGEKIHRYISEH----G-YGSKMNL 170 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~ 170 (505)
.+...+...|++++|+..|++... . .|+ . ..+..+...+...|++++|...++++.+. + .+....+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQ--A--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH--h--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455555555555555555544 1 222 1 24445555555555555555555554432 1 1123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---------ChhHHHHHHHHHHhCCC-----------------hHHHHHHHHH
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEK---------DVVSWSAMISGLAMNGH-----------------GRDAIESFGA 224 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 224 (505)
+..+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555666666666666666666554311 12355666666666666 6677666666
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 225 MQRA----GVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 225 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5431 1111 1236667777788888888888888877653111111 22677788888888888888888877
Q ss_pred C-CC---CC----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 296 M-GV---KP----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 296 ~-~~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
. .. .. ...++..+...+...|++++|...+++..+..+.. ..++..+...|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 11 14567778888999999999999999988764322 33778899999999999999999988
Q ss_pred HHhC
Q 010642 362 MNEK 365 (505)
Q Consensus 362 m~~~ 365 (505)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-12 Score=115.75 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=194.6
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHH
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMPE-KDVVSWSAMI 206 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li 206 (505)
+..++..+...+...+++++|.+.+++..+. .+...+..+...|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667888888999999999999999999984 356788889999999 9999999999998753 4778899999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 207 SGLAM----NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSH----CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 207 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999874 4 5567778888
Q ss_pred HHHh----cCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh-
Q 010642 279 LLGR----AGLLDQAYQLITSM-GVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS- 348 (505)
Q Consensus 279 ~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 348 (505)
.|.. .+++++|.+.|++. .. .+...+..+...+.. .+++++|...+++..+.++ +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 8888 99999999999987 22 356788888889999 9999999999999998876 5688899999999
Q ss_pred ---CCCHHHHHHHHHHHHhCCC
Q 010642 349 ---VGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 349 ---~g~~~~a~~~~~~m~~~~~ 367 (505)
.+++++|.+.+++..+.|.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=131.32 Aligned_cols=265 Identities=10% Similarity=0.029 Sum_probs=162.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-----HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCCC
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-----DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYGS 166 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~ 166 (505)
...+..+...+...|++++|+..|++... . .|+ ...+..+...+...|++++|...+.++.+. +.++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQ--V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh--c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 33444555555566666666666665554 1 122 134445555555666666666665554432 1111
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCC--------------------hH
Q 010642 167 -KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGH--------------------GR 216 (505)
Q Consensus 167 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 216 (505)
...++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234555566666666666666666655432 11 2356666666667777 77
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChH
Q 010642 217 DAIESFGAMQRA----GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 217 ~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 287 (505)
+|+..+.+.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777776665431 11111 235666777777888888888888777653111111 236777778888888888
Q ss_pred HHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHH
Q 010642 288 QAYQLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 288 ~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 353 (505)
+|.+.+++. +..++ ..++..+...+...|++++|...+++..+..+.. ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776 11112 4467777788888889999988888887764322 346778888888999999
Q ss_pred HHHHHHHHHHh
Q 010642 354 KVKELREFMNE 364 (505)
Q Consensus 354 ~a~~~~~~m~~ 364 (505)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=127.65 Aligned_cols=227 Identities=13% Similarity=0.102 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCChhHHHHHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS-LGMAFEVFKGMP---EKDVVSWSAMISG 208 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~-~~~A~~~~~~m~---~~~~~~~~~li~~ 208 (505)
...|..+..++...|++++|.+.++++++.. +.+..+|+.+..+|.+.|+ +++|+..|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567778888899999999999999999986 6678999999999999997 999999999876 3477899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh-cCChH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR-AGLLD 287 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 287 (505)
+...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++. .+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999985432 5678899999999999999999999999974 23356788999999999 66668
Q ss_pred HH-----HHHHHHC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC--------
Q 010642 288 QA-----YQLITSM-GVKP-DSTIWRTLLGACRIHK--HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG-------- 350 (505)
Q Consensus 288 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 350 (505)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +..|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 4777776 4556 4678988888888888 689999999998 778888889999999999874
Q ss_pred -CHHHHHHHHHHH-Hh
Q 010642 351 -DWEKVKELREFM-NE 364 (505)
Q Consensus 351 -~~~~a~~~~~~m-~~ 364 (505)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999987 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-13 Score=124.94 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=174.9
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-----HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCC-Cch
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-----DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYG-SKM 168 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~ 168 (505)
+......+...|++++|+..|+++.. . .|+ ...+..+...+...|++++|.+.+.++.+. +.+ ...
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~--~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQ--V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh--h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34445556666666666666666655 1 222 244555666666666777666666655432 111 124
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHHH
Q 010642 169 NLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGH--------------------GRDAI 219 (505)
Q Consensus 169 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 219 (505)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4566677777777777777777665431 12 2356667777777777 77777
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHH
Q 010642 220 ESFGAMQRA----GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 220 ~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 290 (505)
..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777765431 11111 245667777888889999998888887653111111 236777888888999999998
Q ss_pred HHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHH
Q 010642 291 QLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVK 356 (505)
Q Consensus 291 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~ 356 (505)
+.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876 11112 4567778888999999999999999988765322 336778999999999999999
Q ss_pred HHHHHHHhC
Q 010642 357 ELREFMNEK 365 (505)
Q Consensus 357 ~~~~~m~~~ 365 (505)
..+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=131.31 Aligned_cols=340 Identities=9% Similarity=-0.031 Sum_probs=223.6
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSL---MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-- 79 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 79 (505)
+.+.|++++|+.+|++..+.|. ...+..+...+...|+. ++|...++...+. ++..+..|..++...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 4567899999999999988763 33444455555666777 8999999888754 4455666666455554
Q ss_pred ---CHHHHHHHHhcCCCC-ChhHHHHHHHHHHHCCChhH---HHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHH
Q 010642 80 ---KSFEACKLFDEIPQR-DTVAWNVLISCYIRNQRTRD---ALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 80 ---~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 152 (505)
+.++|...|++..++ +..++..|...|...+..++ +.+.+..... .| +......+...+...+.++.+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcccC
Confidence 788999999877653 55678888888888766444 4444444433 22 344556666677666644444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CChhHHHHHHHHHHhC----CChHHHHHHH
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCG---SLGMAFEVFKGMPE---KDVVSWSAMISGLAMN----GHGRDAIESF 222 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~ 222 (505)
......+.+.-...++..+..|..+|.+.| +.++|...|++..+ ++...+..+...|... +++++|+..|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 333222222222334458889999999999 99999999987653 3344446677777554 6899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-----ChHHHHHHHH
Q 010642 223 GAMQRAGVFPDDQTFTGVLSA-C--SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-----LLDQAYQLIT 294 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~ 294 (505)
++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|..+|. .| ++++|.++|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 33 34455555554 3 5689999999999999874 4 5667777887777 45 9999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 010642 295 SMGVKPDSTIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKG 366 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 366 (505)
+.- .-+...+..|...|.. ..++++|...+++..+.+ ++.....|..+|.. ..+.++|...++...+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 987 5577788778777765 348999999999988765 45678888888875 458999999999988877
Q ss_pred CC
Q 010642 367 LQ 368 (505)
Q Consensus 367 ~~ 368 (505)
..
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=120.82 Aligned_cols=198 Identities=10% Similarity=0.021 Sum_probs=155.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 166 SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 166 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456778888999999999999999998753 467789999999999999999999999998753 236678888999
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 2346678888999999999999999999988 3333 67788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
|...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=130.34 Aligned_cols=296 Identities=11% Similarity=0.012 Sum_probs=175.7
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---------C
Q 010642 28 TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD----SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---------R 94 (505)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~ 94 (505)
+....+......+...|++++|...++.+++.+.. + ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666777788889999999999988887532 3 34677788888888888888888776532 1
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccC--------------------hH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGA--------------------LE 150 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~--------------------~~ 150 (505)
...+|..+...|...|++++|+..+++....... .++ ..++..+...+...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777778888888888888888776541000 011 2355566666666666 66
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 151 FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 151 ~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+|...+....+. +.....+ ...++..+...|...|++++|...|++..+.
T Consensus 165 ~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 165 AAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666665554432 0000000 1123444444444455555555554444321
Q ss_pred CC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---
Q 010642 229 GV-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM--- 296 (505)
Q Consensus 229 g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--- 296 (505)
.. .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 00 011 124555555666666666666666655432110011 345566666777777777777766665
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC------CCCchHHHHHHHHHhCCCHH
Q 010642 297 -GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKA------QESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 297 -~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 353 (505)
...++ ..++..+...+...|++++|...+++..+..+ ....++..+...|...|+..
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11112 44667777788888888888888888776531 22346777888888888764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=128.86 Aligned_cols=311 Identities=11% Similarity=0.027 Sum_probs=219.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH---HHHHHHHhcCCCCChhHHHHHHHHHHHCC--
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS---FEACKLFDEIPQRDTVAWNVLISCYIRNQ-- 110 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 110 (505)
+...+.+.|++++|.+.++.+.+.| +...+..|..+|...|+. ++|...|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556677899999999999998887 334455666777778888 89999999988778888888888666666
Q ss_pred ---ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--
Q 010642 111 ---RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALE---FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG-- 182 (505)
Q Consensus 111 ---~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~---~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g-- 182 (505)
++++|+..|++... .+... .+..+...+...+..+ .+.+.+....+.| ++.....|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~--~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA--NGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCcCHHHHHHHHHHHHH--CCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999988 55432 5556666666555433 3455555555555 3567778888888888
Q ss_pred --CHHHHHHHHhcCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHH
Q 010642 183 --SLGMAFEVFKGMPEKDVVSWSAMISGLAMNG---HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC----GLVDEG 253 (505)
Q Consensus 183 --~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a 253 (505)
..+.|..+++.....++..+..+...|...| +.++|+..|++..+.|. ++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 5666777788877778889999999999999 89999999999998864 4555556666677655 799999
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHH-H--HhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----chhHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDL-L--GRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHK-----HVTLGERVI 325 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~ 325 (505)
..+|++.. +-+...+..|..+ | ...+++++|.++|++.--..+...+..|...|. .| ++++|...|
T Consensus 237 ~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 237 QALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999986 2356677777777 4 468999999999998821226777777777776 55 999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCCC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 367 (505)
++.. +.++..+..|..+|.. ..++++|...|++..+.|.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9988 7778899999999987 3499999999999988775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=128.19 Aligned_cols=270 Identities=10% Similarity=0.007 Sum_probs=144.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhCCCHHHHHHHHhcCCC---------CChhHHHH
Q 010642 35 FAIKCCMKFCSLMGGLQIHARVLRDGYQLDS----QLMTTLMDLYSTFEKSFEACKLFDEIPQ---------RDTVAWNV 101 (505)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 101 (505)
.+...+...|++++|...++.+++.+.. +. .++..+...|...|++++|...|++..+ ....+|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555666666666666666665322 22 3455555666666666666666554421 12334555
Q ss_pred HHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHHHHHhccC-----------------hHHHHHHHHHHHH
Q 010642 102 LISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQACAHLGA-----------------LEFGEKIHRYISE 161 (505)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~~~~~~~~-----------------~~~a~~i~~~~~~ 161 (505)
+...|...|++++|+..|++..... .+-.| ...++..+...+...|+ +++|.+.+.+..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 5555666666666665555543310 00001 12234444444444455 4444444443332
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----H
Q 010642 162 HGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK--DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD----D 234 (505)
Q Consensus 162 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~ 234 (505)
.. .....+ ...+|..+...|...|++++|+..|++..+... .++ .
T Consensus 212 ~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 212 LM----------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HH----------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HH----------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 10 000000 122455555566666666666666665543210 011 1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCC-CH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKP-DS 302 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 302 (505)
.++..+...+...|++++|...+++......-.. ....+..+...|...|++++|.+.+++. +..+ ..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2556666677777777777777766654211001 1345667777777788888887777766 1111 13
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
.++..+...+...|++++|...+++..+..+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4667777888888888888888888887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=122.58 Aligned_cols=268 Identities=10% Similarity=-0.004 Sum_probs=150.5
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---------CChhH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLD----SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---------RDTVA 98 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~ 98 (505)
.+......+...|++++|...++++++.... + ..++..+...|...|++++|...|++..+ ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556667778888888888888876422 3 35667777778888888888887776532 12456
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccC--------------------hHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGA--------------------LEFGEK 154 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~--------------------~~~a~~ 154 (505)
+..+...|...|++++|+..+++....... .++ ..++..+...+...|+ +++|.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 777777888888888888887776541000 112 2355566666666777 666666
Q ss_pred HHHHHHHc----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010642 155 IHRYISEH----GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG 229 (505)
Q Consensus 155 i~~~~~~~----~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 229 (505)
.+.+..+. +. +....++..+...|...|++++|...|++ ..+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------------------a~~~~ 213 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ-------------------------------RLLIA 213 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------------------HHHHH
Confidence 66554432 11 11123444455555555555555555443 32210
Q ss_pred C-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC----
Q 010642 230 V-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---- 296 (505)
Q Consensus 230 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 296 (505)
. .++ ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 001 124444455555555555555555554432100011 334555566666666666666666554
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 297 ---GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 297 ---~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
+..+ ...++..+...+...|++++|...++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1111 13355666677777777777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.5e-13 Score=131.84 Aligned_cols=207 Identities=7% Similarity=-0.080 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 010642 150 EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL-GMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (505)
+++.+.+....+.. +.+...+..+...|...|++ ++|+..|++.. ..+...|..+...|.+.|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 33555666666666666666 66666666543 234567777777777778888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc--------CChHH
Q 010642 226 QRAGVFPDDQTFTGVLSACSHC---------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA--------GLLDQ 288 (505)
Q Consensus 226 ~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 288 (505)
.+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 764 46667777777788887 8888888888888763 233466777888888887 88899
Q ss_pred HHHHHHHC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 289 AYQLITSM-GVKP----DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 289 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
|.+.|++. .+.| +...|..+..++...|++++|...++++.+..|.++..+..+..++...|++++|.+.+++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98888887 4455 6788999999999999999999999999999999988999999999999999999876543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=106.00 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVV 277 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 277 (505)
+...|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 4456677777777777777777777777664221 4456677777777777777777777777653 223445566666
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
..+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..++++.+..|.++.+|..+..+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7777788888888877776 3333 4667788888888889999999999998888888888888899999999999999
Q ss_pred HHHHHHHHhC
Q 010642 356 KELREFMNEK 365 (505)
Q Consensus 356 ~~~~~~m~~~ 365 (505)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9988887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-11 Score=110.74 Aligned_cols=218 Identities=8% Similarity=-0.017 Sum_probs=137.7
Q ss_pred hHHHHHHHHchhccCCCCCCHHHHHHHHHHHH-------hccCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010642 113 RDALCLFDNLNREESGCKPDDVTCLLVLQACA-------HLGAL-------EFGEKIHRYISEHGYGSKMNLCNSLIAMY 178 (505)
Q Consensus 113 ~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~l~~~y 178 (505)
++|+.+|++... ..+-+...|...+..+. ..|++ ++|..+++++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456666666655 12334445555555443 23554 67777777777631244555677777777
Q ss_pred HhcCCHHHHHHHHhcCCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE--K-DVV-SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC-SHCGLVDEG 253 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a 253 (505)
.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776542 2 233 677777777777777777777777776432 2333343332221 235778888
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010642 254 MMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-G---VKP--DSTIWRTLLGACRIHKHVTLGERVIEH 327 (505)
Q Consensus 254 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 327 (505)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88887777632 234566777777777778888888777776 2 344 355777777777777888888888888
Q ss_pred HHHhcCCCC
Q 010642 328 LIELKAQES 336 (505)
Q Consensus 328 ~~~~~~~~~ 336 (505)
+.+..|.+.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 777777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=123.54 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CC-cCCcc
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD----DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GI-LPNIH 271 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 271 (505)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344455555555555555555555442100 011 1245555555566666666666655554410 11 11233
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CC-----CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GV-----KPD-STIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ ++.|..++++. ...+.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4555556666666666666666554 00 111 1223445555555665 44444444443 111222345666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 010642 342 LLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777776643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-13 Score=123.98 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=99.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC-----CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc------C
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREES-----GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH------G 163 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~ 163 (505)
+..+|..+...|...|++++|+.+|+++..... ..+....++..+...+...|++++|...+.++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345677777788888888888888877765100 12223455666677777777777777777776654 2
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC---
Q 010642 164 Y-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA--- 228 (505)
Q Consensus 164 ~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 228 (505)
. +....++..+...|...|++++|...|++..+ + ....+..+...|...|++++|++.|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22345566667777777777777766665431 1 1234555556666666666666666665542
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 229 ---GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 229 ---g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
+-.|+ ..++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555556666666666666666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=108.24 Aligned_cols=211 Identities=10% Similarity=0.063 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCH-------HHHHHHHhcCCC----CChhHHHHHHHHHHH
Q 010642 47 MGGLQIHARVLRDGYQLDSQLMTTLMDLYS-------TFEKS-------FEACKLFDEIPQ----RDTVAWNVLISCYIR 108 (505)
Q Consensus 47 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 108 (505)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56778888888764 557778888877765 35775 888888887543 256688888888889
Q ss_pred CCChhHHHHHHHHchhccCCCCCCH-H-HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-hcCCHH
Q 010642 109 NQRTRDALCLFDNLNREESGCKPDD-V-TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS-KCGSLG 185 (505)
Q Consensus 109 ~g~~~~A~~~~~~m~~~~~~~~pd~-~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~-~~g~~~ 185 (505)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|+++++.. +.+..+|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999988866 45543 2 68888888888889999999998888764 445555554444432 368888
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAG-VFPD--DQTFTGVLSACSHCGLVDEGMMFLDR 259 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~ 259 (505)
+|..+|++.. ..+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888765 3466788888888888889999999998888763 4553 45677777777888888888888888
Q ss_pred Hhhh
Q 010642 260 MSKD 263 (505)
Q Consensus 260 ~~~~ 263 (505)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=119.20 Aligned_cols=292 Identities=10% Similarity=0.005 Sum_probs=204.9
Q ss_pred HHccCCcHHHHHHHHHHHHhC--CCCC--hhHHHHHHHHH--HhCCCHHHHH-----------HHHhcCCC-C-Chh---
Q 010642 40 CMKFCSLMGGLQIHARVLRDG--YQLD--SQLMTTLMDLY--STFEKSFEAC-----------KLFDEIPQ-R-DTV--- 97 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~--~~~g~~~~A~-----------~~~~~~~~-~-~~~--- 97 (505)
+.+.+++++|..+.+.+.+.- ...| ...|-.++..- ...++++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346788888988888876532 2223 33334444321 1123333333 44444322 1 111
Q ss_pred ---HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccChHHHHHHHHHHHHcC--C----
Q 010642 98 ---AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGALEFGEKIHRYISEHG--Y---- 164 (505)
Q Consensus 98 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~---- 164 (505)
.|......+...|++++|+..|++....-.. .+| ..++..+...+...|+++.|...+.++.+.. .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 1223566788899999999999988651011 122 3577888888999999999999999887641 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRA----GV- 230 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~- 230 (505)
+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 11245788899999999999999999987652 22 247888999999999999999999998762 23
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCCcchHHHHHHHHHhcCC---hHHHHHHHHHCCCCCC-HH
Q 010642 231 FPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPNIHHYGCVVDLLGRAGL---LDQAYQLITSMGVKPD-ST 303 (505)
Q Consensus 231 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~ 303 (505)
.....++..+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++.+..|+ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 2234678889999999999999999999887531 111222335667788888998 8999999999865554 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
.+..+...+...|++++|...+++..+..
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 67778899999999999999999988765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=120.53 Aligned_cols=248 Identities=12% Similarity=0.035 Sum_probs=156.7
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC----C
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ--------R---DTVAWNVLISCYIRNQRTRDALCLFDNLNREES----G 128 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~ 128 (505)
+..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++...... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788888889999999999999987754 1 345688888999999999999999999876200 1
Q ss_pred CCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 010642 129 CKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEH------GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---- 196 (505)
Q Consensus 129 ~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---- 196 (505)
-.| ...++..+...+...|++++|...+.++.+. +. +....++..+...|...|++++|...|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3467778888899999999999999988865 22 23456788889999999999999998887642
Q ss_pred ---C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC
Q 010642 197 ---K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN 269 (505)
Q Consensus 197 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 269 (505)
+ ...++..+...|...|++++|...|+++.+.. |+. .+..+- ....... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HH
Confidence 1 23467888889999999999999999887631 000 000000 0000000 00
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
...+..+...+...+.+.+|...++.. ...| +..+|..+...+...|++++|...+++..++.|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 011112222333445555555555555 2223 244566667777777777777777777766554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-09 Score=105.52 Aligned_cols=262 Identities=13% Similarity=-0.022 Sum_probs=170.5
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHH----HHHHHHHHHHhccChHHHHHHHHHHHHcCC---CC--chhHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDV----TCLLVLQACAHLGALEFGEKIHRYISEHGY---GS--KMNLC 171 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~---~~--~~~~~ 171 (505)
.+...+...|++++|...+++... ..-..+.. ++..+...+...|++++|...+.+..+... .+ ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344456667777777777777655 22111221 344555666677777777777777665310 11 12335
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMPE-------K----DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF--P--DDQT 236 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t 236 (505)
..+...|...|++++|...|++..+ + ....+..+...+...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6677778888888888877765531 1 1234566777788888888888888887653221 1 2346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHH-----HHHHHHHhcCChHHHHHHHHHC-CCCCC-----HHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYG-----CVVDLLGRAGLLDQAYQLITSM-GVKPD-----STIW 305 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 305 (505)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888999999999888765311111111222 2334477889999999999888 22221 3356
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 306 RTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+...+...|++++|...+++..+..+.. ...+..+..+|...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677788888999999999999887654211 12566778889999999999999888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-11 Score=101.49 Aligned_cols=160 Identities=10% Similarity=0.033 Sum_probs=90.8
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVL 140 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll 140 (505)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+..... ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHH
Confidence 344455555555555555555555554432 2445555555555556666666655555544 1222334444555
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
..+...++++.+...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 55555666666666666655553 4455566666666666666666666666543 2345566666677777777777
Q ss_pred HHHHHHHHHH
Q 010642 218 AIESFGAMQR 227 (505)
Q Consensus 218 A~~~~~~m~~ 227 (505)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777665
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=120.77 Aligned_cols=211 Identities=11% Similarity=-0.008 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCH-HHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHH
Q 010642 45 SLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKS-FEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFD 120 (505)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 120 (505)
.++++.+.++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777665443 45778888899999999999 999999988753 467899999999999999999999999
Q ss_pred HchhccCCCCCCHHHHHHHHHHHHhc---------cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--------CC
Q 010642 121 NLNREESGCKPDDVTCLLVLQACAHL---------GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC--------GS 183 (505)
Q Consensus 121 ~m~~~~~~~~pd~~t~~~ll~~~~~~---------~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~--------g~ 183 (505)
+..+ ..|+...+..+...+... |++++|.+.++++++.. +.+...+..+..+|... |+
T Consensus 162 ~al~----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9977 557888888999999999 99999999999999985 66788999999999998 99
Q ss_pred HHHHHHHHhcCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 184 LGMAFEVFKGMPE------KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 184 ~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+++|...|++..+ .+...|..+..+|...|++++|++.|++..+... -+...+..+...+...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998752 4677899999999999999999999999987532 24567888888999999999999988
Q ss_pred HHHhh
Q 010642 258 DRMSK 262 (505)
Q Consensus 258 ~~~~~ 262 (505)
..+..
T Consensus 316 ~~~~~ 320 (474)
T 4abn_A 316 GKTKP 320 (474)
T ss_dssp TTCCH
T ss_pred ccccC
Confidence 87765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-11 Score=114.49 Aligned_cols=162 Identities=11% Similarity=-0.039 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---CCcCCcch
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRA----GVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---GILPNIHH 272 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 272 (505)
+++.+...|...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4445555555555555555555554431 1110 11344555556666666666666666555410 11112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM----GV--KPD-STIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|...+++.. ..+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 555666666666666666666655 11 121 2234444444555555 444444444311 112223355567
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 010642 343 LNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...|...|++++|...+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-11 Score=123.02 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVV 277 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 277 (505)
.+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|+..|++..+. .| +...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 34555555566666666666666665552 333 345556666666666666666666666542 23 345566666
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|.++..+..|+.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665 3444 3556777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 010642 356 KELREFMN 363 (505)
Q Consensus 356 ~~~~~~m~ 363 (505)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=105.09 Aligned_cols=303 Identities=9% Similarity=0.043 Sum_probs=206.4
Q ss_pred CCChhhHHHHHHHH--HccCCcHHHHHHHHHHHHhC--CCCC--hhHHHHHHHHH-----HhCCCHH---------HHHH
Q 010642 27 PTNPFACSFAIKCC--MKFCSLMGGLQIHARVLRDG--YQLD--SQLMTTLMDLY-----STFEKSF---------EACK 86 (505)
Q Consensus 27 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~-----~~~g~~~---------~A~~ 86 (505)
.|+...-..+-.-+ ...+++++|.++.+.+.+.. ...| ...|-.|+..- ....... +..+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444444444444 67788999999888876532 2223 33334444321 1111112 3333
Q ss_pred HHhcCCCC--Ch---hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----HHHHHHHHHHHHhccChHHHHHHHH
Q 010642 87 LFDEIPQR--DT---VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----DVTCLLVLQACAHLGALEFGEKIHR 157 (505)
Q Consensus 87 ~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----~~t~~~ll~~~~~~~~~~~a~~i~~ 157 (505)
..+....+ +. ..|......+...|++++|+..|++.... ..-.+| ..++..+...+...|+++.|...+.
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33332222 11 12334455678899999999999988652 111133 3567788888999999999999998
Q ss_pred HHHHcC--C---C-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHH
Q 010642 158 YISEHG--Y---G-SKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 158 ~~~~~~--~---~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
++.+.. . . ....+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 887641 1 1 1245778899999999999999999887642 22 346788899999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC---cchHHHHHHHHHhcCC---hHHHHH
Q 010642 223 GAMQR-----AGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN---IHHYGCVVDLLGRAGL---LDQAYQ 291 (505)
Q Consensus 223 ~~m~~-----~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~ 291 (505)
++... .... ...++..+...+.+.|++++|...+++..+...-.++ ...+..+...|...++ +.+|..
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99876 3322 3567888899999999999999999998875322222 2345556666777888 899999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHHHh
Q 010642 292 LITSMGVKPDS-TIWRTLLGACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 292 ~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
.+++.+..|+. ..+..+...+...|++++|...+++..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99987554443 36667888999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=98.95 Aligned_cols=162 Identities=12% Similarity=-0.037 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566677777777777777777777653 244556666666677777777777776666532 12344555555555
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERV 324 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 324 (505)
...|++++|...++++.+. .+ .+...+..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NP--------------------------------INFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--Cc--------------------------------HhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5666666666666555542 11 2344455555555556666666666
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 325 IEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
++++.+..|.++..+..++..|...|++++|.+.+++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665555555666666666666666666666665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-09 Score=103.09 Aligned_cols=256 Identities=11% Similarity=-0.013 Sum_probs=123.5
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHH
Q 010642 6 SMSSSPEEGFYLFEKMRQKRIPTNPF----ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ-LD----SQLMTTLMDLYS 76 (505)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~ 76 (505)
...|++++|+..+++........+.. ++..+...+...|++++|.+.+++.+..... .+ ..++..+...|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34566777777776666543222221 3344445555666777766666665543211 11 122344555566
Q ss_pred hCCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC--CHHHHHHHHHHH
Q 010642 77 TFEKSFEACKLFDEIPQ-------R----DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP--DDVTCLLVLQAC 143 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--d~~t~~~ll~~~ 143 (505)
..|++++|...+++... + ...++..+...+...|++++|...+++.........+ ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 66666666666654421 1 1233455556666666666666666665431011111 123445555556
Q ss_pred HhccChHHHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhcCCCCCh-------hHHHHHHHHHH
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKM-NLCN-----SLIAMYSKCGSLGMAFEVFKGMPEKDV-------VSWSAMISGLA 210 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~-----~l~~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~ 210 (505)
...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++...++. ..+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 6666666666666665543111110 0111 222335566666666666665543211 12344445555
Q ss_pred hCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 211 MNGHGRDAIESFGAMQRA----GVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 556666665555554321 111111 133333444445555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-10 Score=95.45 Aligned_cols=159 Identities=11% Similarity=-0.045 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHH
Q 010642 133 DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGL 209 (505)
Q Consensus 133 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 209 (505)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567778888999999999999999888764 5578889999999999999999999999865 34677899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
...|++++|.+.|+++.... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753 335677778888888888998888888888763 122334444444444444554444
Q ss_pred HHHHHH
Q 010642 290 YQLITS 295 (505)
Q Consensus 290 ~~~~~~ 295 (505)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-10 Score=100.38 Aligned_cols=203 Identities=5% Similarity=-0.052 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHH
Q 010642 131 PDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMIS 207 (505)
Q Consensus 131 pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~ 207 (505)
.|+..+......+...|++++|...+..+++...+++..++..+..+|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888889999999999999999999987437777777799999999999999999987653 35567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC---cchHHHH
Q 010642 208 GLAMNGHGRDAIESFGAMQRAGVFPD-D-------QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN---IHHYGCV 276 (505)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 276 (505)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999998874 343 3 3467777788889999999999999875 3444 4567777
Q ss_pred HHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
...|...|+. .++++ .+ ..+...|.... ....+.+++|...+++..+..|.++.+...+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777655433 23333 11 22344444433 3455778999999999999999987766655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-08 Score=100.10 Aligned_cols=353 Identities=10% Similarity=0.002 Sum_probs=232.4
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---HHHHHHH
Q 010642 11 PEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK---SFEACKL 87 (505)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 87 (505)
..+-+..|++.+..+. -|..+|..++..+.+.++++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4455666777776653 48889999999998889999999999999887 56778889999988888888 9999999
Q ss_pred HhcCCC-----CChhHHHHHHHHHHHCCCh--------hHHHHHHHHchhccCCC-CCC-HHHHHHHHHHHH--------
Q 010642 88 FDEIPQ-----RDTVAWNVLISCYIRNQRT--------RDALCLFDNLNREESGC-KPD-DVTCLLVLQACA-------- 144 (505)
Q Consensus 88 ~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~~-~pd-~~t~~~ll~~~~-------- 144 (505)
|++... +++..|..-+.-..+.++. +...++|+..... .|. .|+ ...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHhccccCcH
Confidence 998753 6777888877765554443 3344777776542 455 554 345555554332
Q ss_pred -hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------------hcCCHHHHHHHHh------------------
Q 010642 145 -HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS-------------KCGSLGMAFEVFK------------------ 192 (505)
Q Consensus 145 -~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~-------------~~g~~~~A~~~~~------------------ 192 (505)
..++++.+.++|.+++......-..+|......-- ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 23456777788887775321111222211111000 0011222333322
Q ss_pred -------------------------------------------------cCC---CCChhHHHHHHHHHHhCCChHHHH-
Q 010642 193 -------------------------------------------------GMP---EKDVVSWSAMISGLAMNGHGRDAI- 219 (505)
Q Consensus 193 -------------------------------------------------~m~---~~~~~~~~~li~~~~~~g~~~~A~- 219 (505)
+.. ..+...|-..+.-+.+.|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 111 112233444444555678888886
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC--------CcCC------------cchHHHHHHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG--------ILPN------------IHHYGCVVDL 279 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~p~------------~~~~~~li~~ 279 (505)
++|++.... .+.+...+...+......|++++|..+|+.+..... -.|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 899888763 333445566677778888999999999999886310 0132 2368888888
Q ss_pred HHhcCChHHHHHHHHHC-CC--CCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 280 LGRAGLLDQAYQLITSM-GV--KPDSTIWRTLLGACRIH-KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
..+.|.++.|..+|.++ .. .+....|...+..-... ++.+.|..+|+..++..|.++..+...+......|+.+.|
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 88899999999999988 22 12233443333223333 5589999999999999888888888888888899999999
Q ss_pred HHHHHHHHhCCC
Q 010642 356 KELREFMNEKGL 367 (505)
Q Consensus 356 ~~~~~~m~~~~~ 367 (505)
..+|++......
T Consensus 524 R~lferal~~~~ 535 (679)
T 4e6h_A 524 KSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHTTTSS
T ss_pred HHHHHHHHHhcC
Confidence 999998877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-10 Score=98.48 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=143.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---E-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD-DQTFTG 239 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 239 (505)
+.++..+..+...|.+.|++++|...|++.. . ++...+..+..+|...|++++|+..|++..+. .|+ ...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHH
Confidence 3456788888999999999999999998764 2 67777777888999999999999999998874 444 467788
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCc-------chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC---HHHHHHH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNI-------HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD---STIWRTL 308 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 308 (505)
+...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 8888999999999999999988742 2233 45777788888899999999999887 66776 3466666
Q ss_pred HHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 309 LGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...+... +...++++....+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 6666443 44556667777665555554433 34556789999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-08 Score=103.12 Aligned_cols=214 Identities=9% Similarity=-0.047 Sum_probs=161.2
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAF-EVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
+..+|++++.. ++.+..+|...+..+.+.|+.++|. .+|++.. ..+...|-..+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567777765 3556777888888888889988996 9998765 24566788888888999999999999999886
Q ss_pred CC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-C
Q 010642 228 AG---------VFPD------------DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-L 285 (505)
Q Consensus 228 ~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~ 285 (505)
.. -.|+ ...|...+....+.|..+.|..+|....+. ...+....|...+..-.+.+ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 31 0142 235777777777889999999999999874 11223344544444444554 5
Q ss_pred hHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC---CCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 286 LDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ---ESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 286 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
.+.|.++|+.. ...-+...|...+......|+.+.|..+|+++....|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999987 22235667788888888899999999999999988763 34577788888889999999999999
Q ss_pred HHHhCCC
Q 010642 361 FMNEKGL 367 (505)
Q Consensus 361 ~m~~~~~ 367 (505)
++.+.--
T Consensus 566 R~~~~~P 572 (679)
T 4e6h_A 566 RFFEKFP 572 (679)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 9987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=103.65 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 010642 132 DDVTCLLVLQACAHLGALEFGEKIHRYISEH------GY-GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-------K 197 (505)
Q Consensus 132 d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-------~ 197 (505)
...++..+...+...|++++|...+.++.+. +. +....++..+...|...|++++|...|++..+ +
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677777777888888888887777654 22 22456677788888888888888888776531 1
Q ss_pred ----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 198 ----DVVSWSAMISGLAMNGHGRDAIESFGAMQRA------GVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 198 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
...+|..+...|...|++++|...|++..+. +-.|+ ..++..+...+...|++++|..++++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345666777777777777777777776653 11222 34566666677777777777777776664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=113.06 Aligned_cols=156 Identities=11% Similarity=0.072 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHH
Q 010642 65 SQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVL 140 (505)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll 140 (505)
...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+ +.| +...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 34445555555555555555555544432 2344455555555555555555555555444 222 234444444
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHH
Q 010642 141 QACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 141 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~ 217 (505)
.++...|++++|.+.++++++.. +.+..+++.+..+|.+.|++++|++.|++.. ..+...|..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 45555555555555555544443 3334444444444444444444444444332 1233344444444444444444
Q ss_pred HHHHHHHH
Q 010642 218 AIESFGAM 225 (505)
Q Consensus 218 A~~~~~~m 225 (505)
|.+.+++.
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=100.65 Aligned_cols=223 Identities=11% Similarity=-0.035 Sum_probs=159.1
Q ss_pred chhcCCchHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh------CC-CCChhHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQK-------RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD------GY-QLDSQLMTT 70 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 70 (505)
....|++++|+..|++.++. ..+....++..+...+...|++++|...++.+++. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 44578888888888887662 11224567888889999999999999999998875 22 234567889
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCC----------C-ChhHHHHHHHHHHHCCChhHHHHHHHHchhcc----CCCCC-CHH
Q 010642 71 LMDLYSTFEKSFEACKLFDEIPQ----------R-DTVAWNVLISCYIRNQRTRDALCLFDNLNREE----SGCKP-DDV 134 (505)
Q Consensus 71 li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~p-d~~ 134 (505)
+...|...|++++|...|++..+ | ...+|..+...|...|++++|+..|++..... .+..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987642 1 35678899999999999999999999987610 01133 346
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHc-------CC-CCchhHHHHHHHHHHhcC------CHHHHHHHHhcCCCCC--
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEH-------GY-GSKMNLCNSLIAMYSKCG------SLGMAFEVFKGMPEKD-- 198 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~-------~~-~~~~~~~~~l~~~y~~~g------~~~~A~~~~~~m~~~~-- 198 (505)
++..+...+...|++++|...++++.+. .. +.....+..+...+...+ .+..+...++.....+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7888899999999999999999988864 11 223334444444444333 3555556666655432
Q ss_pred -hhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 199 -VVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 199 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
..++..+...|...|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999999999999998865
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-09 Score=98.38 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=97.8
Q ss_pred HHHhCCCHHHHHHHHhcCCC-------C--ChhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHH
Q 010642 74 LYSTFEKSFEACKLFDEIPQ-------R--DTVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQ 141 (505)
Q Consensus 74 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~ 141 (505)
.|...|++++|...|++..+ + ...+|+.+...|.+.|++++|+..|++..... .|-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555544321 1 13456666666666666666666666554310 01000 0235666666
Q ss_pred HHHhc-cChHHHHHHHHHHHHcCCC---C--chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C--Chh------HHHHH
Q 010642 142 ACAHL-GALEFGEKIHRYISEHGYG---S--KMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K--DVV------SWSAM 205 (505)
Q Consensus 142 ~~~~~-~~~~~a~~i~~~~~~~~~~---~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~--~~~------~~~~l 205 (505)
++... |++++|...+++.++.... + ...+++.+...|.+.|++++|...|++..+ | ... .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 66664 6666666666666553100 0 023566666677777777777776665431 1 111 35555
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCCHHHHHHHHHHHh
Q 010642 206 ISGLAMNGHGRDAIESFGAMQRAGVFPDD------QTFTGVLSACS--HCGLVDEGMMFLDRMS 261 (505)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~--~~g~~~~a~~~~~~~~ 261 (505)
..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6666667777777777766654 22221 12334445553 4456677777666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=98.61 Aligned_cols=175 Identities=9% Similarity=-0.141 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCN 172 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 172 (505)
...|+.....|...|++++|+..|.+..... .+-+++ ..+|..+..++...|++++|...+++.++..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------- 107 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF--------- 107 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------
Confidence 3445555556666666666666666554310 011111 2344555555555555555555555444321
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhc
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN-GHGRDAIESFGAMQRAGVFP-D----DQTFTGVLSACSH 246 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~~~~~ 246 (505)
...|+...+ ..+|+.+...|... |++++|+..|++..+..... + ..++..+...+..
T Consensus 108 ------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 108 ------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp ------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000110000 12344555555553 55555555555554311000 0 2344555555566
Q ss_pred cCCHHHHHHHHHHHhhhcCCcCCcc-----hHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 247 CGLVDEGMMFLDRMSKDFGILPNIH-----HYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
.|++++|...|++..+...-.+... .|..+..++...|++++|...+++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666665554211111110 3444555555566666666666555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-08 Score=90.59 Aligned_cols=206 Identities=10% Similarity=-0.003 Sum_probs=138.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-D---VVSWSAMISGLAMNGHGRDAIESFGAMQRAGV-FPD-DQT 236 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t 236 (505)
+.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556667777778888888888888887653 2 2 45667777778888888888888888776422 122 244
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHH
Q 010642 237 FTGVLSACSH--------CGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRT 307 (505)
Q Consensus 237 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 307 (505)
+..+..++.. .|++++|...|+++.+.+ |+ ......+....... ..+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~-------~~~--------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELR-------AKL--------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHH-------HHH--------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHH-------HHH--------HHHHHH
Confidence 5566666666 778888888888777642 32 22222221111000 000 112456
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCCcee
Q 010642 308 LLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSV----------GDWEKVKELREFMNEKGLQTTPGCS 374 (505)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~ 374 (505)
+...+...|+++.|+..++++++..|.++ ..+..+..+|... |++++|...++++.+..-
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 77888999999999999999999988754 4788888999876 899999999999876431
Q ss_pred EEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 010642 375 TIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKI 411 (505)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 411 (505)
.++...++...+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-08 Score=89.46 Aligned_cols=237 Identities=8% Similarity=0.010 Sum_probs=143.0
Q ss_pred hCCCHHHHHHHHhcCCCCCh-hHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHH
Q 010642 77 TFEKSFEACKLFDEIPQRDT-VAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKI 155 (505)
Q Consensus 77 ~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i 155 (505)
-.|++..++.-...+...+. ..---+.++|...|++... ..-.|....+..+... ...+ +...
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHHHH-hccc----HHHH
Confidence 45777777665555543222 2222344666666666531 1122333333333322 2222 4555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 156 HRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-----KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
+++.++.+ +++..+...+..+|...|++++|++++.+... .+...+..++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66555544 34445555777777788888888888776632 2445666777788888888888888888876 3
Q ss_pred CC-----CHHHHHHHHHHHh--c--cCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC--
Q 010642 231 FP-----DDQTFTGVLSACS--H--CGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-- 298 (505)
Q Consensus 231 ~p-----~~~t~~~ll~~~~--~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 298 (505)
.| +..+...+..++. . .++..+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 3555555655532 2 33788888888887653 243223334444777888888888888765 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 299 --------KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 299 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.| |+.+...+|......|+ .|.++++++.+..|.++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 45566566666666676 788888888888888754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-08 Score=89.58 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=169.4
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG 182 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g 182 (505)
|+-..-.|++..++.-..++. ...++ .....+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~----~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS----KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS----CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhcC----ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc
Confidence 344556788888888554442 22222 3444556777777776531 112233334443333 33333
Q ss_pred CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 183 SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 183 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
|...|++.. .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+++.|.+.++
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777787665 3456666788899999999999999999987765433 44677788899999999999999999
Q ss_pred HHhhhcCCcC-----CcchHHHHHHH--HH--hcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 259 RMSKDFGILP-----NIHHYGCVVDL--LG--RAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 259 ~~~~~~~~~p-----~~~~~~~li~~--~~--~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
.|.+. .| +..+...|..+ .. ..+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+
T Consensus 161 ~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 161 NYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99764 45 24555555555 22 234999999999999 55566444445556889999999999999988
Q ss_pred HHh----------cCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 329 IEL----------KAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 329 ~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.+. +|.++.++..++......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 776 47788888888888888887 8899999998754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=81.82 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCc
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GV-KPDSTIWRTLLGACRIHKH 317 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~ 317 (505)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444332 1112333444444444445555555554444 11 1234455556666666666
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+++|...++++.+..|.+...+..++..|...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666666667777777777777777666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.3e-09 Score=93.48 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---hh
Q 010642 130 KPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK---MNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-D---VV 200 (505)
Q Consensus 130 ~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~---~~ 200 (505)
+.+...+......+...|++++|...|+.+++.. |.+ ..++..+..+|.+.|++++|...|++..+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456777788888999999999999999999874 334 67888899999999999999999998753 2 1 34
Q ss_pred HHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc
Q 010642 201 SWSAMISGLAM--------NGHGRDAIESFGAMQRAGVFPDDQ-TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIH 271 (505)
Q Consensus 201 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 271 (505)
.+..+..++.. .|++++|+..|++.... .|+.. .... ...+...... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 67778888888 99999999999999875 34431 1111 1111111111 011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHHHhcCCCC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIH----------KHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|.++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2456677788888888888888877 22333 34666677777755 889999999999999998876
Q ss_pred c
Q 010642 337 G 337 (505)
Q Consensus 337 ~ 337 (505)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-08 Score=79.87 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
.|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 456667777777788888888877766432 24566667777777788888888888877763 233455677777788
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
...|++++|.+.++++ ...| +...+..+...+...|+++.|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 2223 5667777888888888888888888888877664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-08 Score=86.19 Aligned_cols=183 Identities=9% Similarity=-0.009 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PDD-QTFTG 239 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~~ 239 (505)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667778888888888888887652 32 245677778888888888888888888764322 111 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHHhhhcCCcCCc-chHHHHHHHHHhcCChHHHHHHHHHCCCCC
Q 010642 240 VLSACSH------------------CGLVDEGMMFLDRMSKDFGILPNI-HHYGCVVDLLGRAGLLDQAYQLITSMGVKP 300 (505)
Q Consensus 240 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 300 (505)
+..++.. .|+.++|...|+++.+. .|+. ..+.++.... ... ...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~------~~~---- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLK------DRL---- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHH------HHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHH------HHH----
Confidence 4444433 34566666666666542 2222 2221111100 000 000
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC---chHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES---GDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
......+...+...|+++.|...++++++..|.++ ..+..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455678889999999999999999998875 46889999999999999999999998876543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=110.70 Aligned_cols=169 Identities=8% Similarity=-0.088 Sum_probs=95.6
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010642 179 SKCGSLGMAFEVFKGMP-----------EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC 247 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 247 (505)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 45566666666665543 22344556666666666666666666666655321 1344555555666666
Q ss_pred CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010642 248 GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVI 325 (505)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 325 (505)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666542 12234555566666666666666 6666655 3333 3445666666666666666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 326 EHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
+++.+.+|.+...+..+..+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-08 Score=82.89 Aligned_cols=155 Identities=11% Similarity=0.044 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHH-
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQA- 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~- 142 (505)
....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+..........
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCChHHHHHHHHHH
Confidence 344566677888999999999988875 3677888888899999999999999988865 33444333222111
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHHHHHHhCCChHH
Q 010642 143 CAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD---VVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~ 217 (505)
+...+....+...++++++.. |.+...+..+..+|.+.|++++|...|+++.+ |+ ...+..+...|...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122223334677777777764 55677788888888888888888888877643 22 3467777888888888888
Q ss_pred HHHHHHHHH
Q 010642 218 AIESFGAMQ 226 (505)
Q Consensus 218 A~~~~~~m~ 226 (505)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-09 Score=88.36 Aligned_cols=139 Identities=9% Similarity=-0.051 Sum_probs=88.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLD 287 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 287 (505)
+...|++++|+..+...... .|+ ...+..+...|.+.|++++|+..|++..+. .+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 33445556666666554431 222 223445556666666666666666666642 1224556666667777777777
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH-HHHHHHhcCCCCchHHHHHHHHHhCCC
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERV-IEHLIELKAQESGDYVLLLNLYSSVGD 351 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 351 (505)
+|...|++. .+.| +...|..+...+...|++++|.+. ++++.++.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777666 4445 466777777788888887765554 578888888888888877777777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=98.81 Aligned_cols=188 Identities=11% Similarity=-0.036 Sum_probs=146.7
Q ss_pred HhccChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 010642 144 AHLGALEFGEKIHRYIS--------EHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMN 212 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 212 (505)
...|++++|.+.++++. +.. +.+...+..+..+|.+.|++++|...|++.. ..+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999998 432 5567889999999999999999999999876 34678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHH
Q 010642 213 GHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQ 291 (505)
Q Consensus 213 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 291 (505)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ...|++..+. .+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 34 45778889999999999999 9999999863 23356788899999999999999999
Q ss_pred HHHHC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHhcCCCCc
Q 010642 292 LITSM-GVKPD-STIWRTLLGACRIHKH-----VTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 292 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 337 (505)
.|++. ...|+ ...|..+..++...++ .+...+..+.+.+..+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 77786 4567777777666554 23333444444444433333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-08 Score=89.01 Aligned_cols=172 Identities=6% Similarity=-0.042 Sum_probs=124.1
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcC
Q 010642 187 AFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFG 265 (505)
Q Consensus 187 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (505)
....+......+...+..+...+.+.|++++|...|++.... .| +...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333333333344455666777777888888888888887764 33 4456777777888888888888888877653
Q ss_pred CcCCcchHHH-HHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--CchHH
Q 010642 266 ILPNIHHYGC-VVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGDYV 340 (505)
Q Consensus 266 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~ 340 (505)
.|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+ ...+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 344332222 223356677778888888776 3344 56788888888999999999999999999998877 67888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 010642 341 LLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 341 ~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.|+..|...|+.++|...+++-.
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999888877643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-08 Score=84.46 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=10.7
Q ss_pred HHHHHHCCChhHHHHHHHHchh
Q 010642 103 ISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~ 124 (505)
...+...|++++|+..|++...
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.6e-08 Score=83.48 Aligned_cols=180 Identities=6% Similarity=-0.075 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGH 214 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 214 (505)
.+......+...|++++|...+.++++.. |.+...+... ..... .......++.+...|.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 33444556677888888888888888764 2333344330 00000 00011122335556666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC--hHHHHHH
Q 010642 215 GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL--LDQAYQL 292 (505)
Q Consensus 215 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~ 292 (505)
+++|+..|++..+.... +...+..+...+...|++++|...|++..+. -+.+...+..+...|...|. .+.+...
T Consensus 70 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66666666666653211 3455666666666666666666666666652 12234555556555544433 3334444
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 293 ITSMGVKPDS--TIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 293 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++.. ..|+. ..+..+..++...|++++|+..|+++++..|.
T Consensus 147 ~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 147 YKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4444 12332 23333444455566677777777777766664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-07 Score=86.42 Aligned_cols=160 Identities=14% Similarity=0.029 Sum_probs=105.6
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHH
Q 010642 62 QLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLL 138 (505)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ 138 (505)
+.+...+..+...+...|++++|...|++... .+..++..+...+.+.|++++|...+++... ..|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHH
Confidence 44455566666667777777777777776542 3556677777777777777777777777654 3444433222
Q ss_pred H-HHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC---hhHHHHHHHHHHhC
Q 010642 139 V-LQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--KD---VVSWSAMISGLAMN 212 (505)
Q Consensus 139 l-l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~~---~~~~~~li~~~~~~ 212 (505)
. ...+...++.+.|...++++.+.. |.+...+..+...|...|++++|...|.++.+ |+ ...+..++..|...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 223455666666777777777664 55667777777777777777777777777652 32 45677777888888
Q ss_pred CChHHHHHHHHHHH
Q 010642 213 GHGRDAIESFGAMQ 226 (505)
Q Consensus 213 g~~~~A~~~~~~m~ 226 (505)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888877777654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-07 Score=88.83 Aligned_cols=221 Identities=11% Similarity=0.013 Sum_probs=148.3
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
..|++++|.+++++..+. .+.. + +...++++.|...|.++ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~---~~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY---LKTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH---HCCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHH---cccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 356778888888877652 1110 0 11135666666655543 4567777888888
Q ss_pred HHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHH
Q 010642 188 FEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAG---VFPD--DQTFTGVLSACSHCGLVDEG 253 (505)
Q Consensus 188 ~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a 253 (505)
...|.+..+ .+ ..+|+.+...|.+.|++++|+..|++....- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 777765532 11 3467788888889999999999988875421 1121 3567778888888 999999
Q ss_pred HHHHHHHhhhcCCc---C-CcchHHHHHHHHHhcCChHHHHHHHHHC-CC---CCC----HHHHHHHHHHHHhcCchhHH
Q 010642 254 MMFLDRMSKDFGIL---P-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GV---KPD----STIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 254 ~~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a 321 (505)
+..|++....+.-. + ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887632111 1 1356788889999999999999999887 11 112 22566666777788999999
Q ss_pred HHHHHHHHHhcCCCCch-----HHHHHHHHHhCCCHHHHHHH
Q 010642 322 ERVIEHLIELKAQESGD-----YVLLLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~ 358 (505)
...+++.. ..|....+ ...++.+| ..|+.+.+..+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 77754432 33455555 56777666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-07 Score=79.78 Aligned_cols=161 Identities=9% Similarity=-0.049 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHhhhcCCcCCcchH
Q 010642 198 DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG----LVDEGMMFLDRMSKDFGILPNIHHY 273 (505)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 273 (505)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 44444455555555555566666666555543 34444455555555 4 566666666666542 2 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 274 GCVVDLLGR----AGLLDQAYQLITSM-GVKPD---STIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 274 ~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
..|...|.. .+++++|.++|++. ...|+ ...+..|...|.. .+++++|...+++..+. +.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 555555555 56677777777666 33332 5566666666666 66777788888777776 445567777
Q ss_pred HHHHHHhC-C-----CHHHHHHHHHHHHhCCC
Q 010642 342 LLNLYSSV-G-----DWEKVKELREFMNEKGL 367 (505)
Q Consensus 342 l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 367 (505)
|..+|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77777654 2 77888888877776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.2e-08 Score=97.88 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=124.2
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 181 CGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.|++++|...|++..+ .+...|..+...|.+.|++++|.+.|++..+... .+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998764 3567899999999999999999999999988532 24678888999999999999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHHHhc
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH---KHVTLGERVIEHLIELK 332 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 332 (505)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++.+.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2335678889999999999999999999988 4444 577888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010642 333 AQESGDYVLLL 343 (505)
Q Consensus 333 ~~~~~~~~~l~ 343 (505)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-07 Score=81.33 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC--CC----hhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ--RD----TVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
.+..+...+.+.|++++|+..|+++.+ |+ ..++..+..+|.+.|++++|+..|++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445556666666666666666542 21 23555666666666666666666666655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=80.84 Aligned_cols=61 Identities=5% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC--CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE--SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
...+..+...+...|++++|...++++.+..|.. +..+..+..+|...|+.++|...|++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4444445555555555555555555555555432 234555555555555555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-06 Score=80.88 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=70.2
Q ss_pred hhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhcc--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 010642 112 TRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLG--ALEFGEKIHRYISEHGYGSKMNLCNSLIAMY----SKC--- 181 (505)
Q Consensus 112 ~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y----~~~--- 181 (505)
.++|+++++++.. +.|+. ..|+.--.++...+ +++++.+.++.++... |.+..+|+.-...+ .+.
T Consensus 49 s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGIN----ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3466666666655 34443 33444444555555 6666666666666553 33444444433333 333
Q ss_pred CCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 010642 182 GSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGR--DAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL------V 250 (505)
Q Consensus 182 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~ 250 (505)
++++++..+++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 45555555555543 234445555444455555555 555555555544332 33444433333333333 4
Q ss_pred HHHHHHHHHHh
Q 010642 251 DEGMMFLDRMS 261 (505)
Q Consensus 251 ~~a~~~~~~~~ 261 (505)
+++++.++.+.
T Consensus 203 ~eEl~~~~~aI 213 (306)
T 3dra_A 203 DEELNYVKDKI 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=95.74 Aligned_cols=147 Identities=8% Similarity=-0.122 Sum_probs=109.8
Q ss_pred ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 010642 146 LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESF 222 (505)
Q Consensus 146 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 222 (505)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 55688899999999999999999999997653 45678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc---CChHHHHHHHHHC
Q 010642 223 GAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---GLLDQAYQLITSM 296 (505)
Q Consensus 223 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 296 (505)
++..+... .+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99987532 24678888999999999999999999999874 233567788899999999 9999999999887
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.1e-07 Score=77.93 Aligned_cols=146 Identities=8% Similarity=-0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL 249 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 249 (505)
.+..+...|...|++++|...|++...++...|..+...|.+.|++++|+..|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345667778888889999988888887788888888888888888888888888887653 2245677778888888888
Q ss_pred HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 250 VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD-STIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
+++|...|++..+...-.+... | ...| +...|+ ...|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-~-------~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH-H-------HHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888876311111110 0 0000 012332 356677777788888888888888888
Q ss_pred HHhcCCC
Q 010642 329 IELKAQE 335 (505)
Q Consensus 329 ~~~~~~~ 335 (505)
.+..|.+
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 8887765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-07 Score=79.13 Aligned_cols=154 Identities=11% Similarity=-0.004 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC----CHHHHHHHH
Q 010642 13 EGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE----KSFEACKLF 88 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 88 (505)
+|+..|++..+.| +...+..+...+...+++++|...+++..+.| ++..+..|..+|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 5666777776654 55666667677777777777777777776654 45556666666665 5 667777766
Q ss_pred hcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHHHh----ccChHHHHHHH
Q 010642 89 DEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQACAH----LGALEFGEKIH 156 (505)
Q Consensus 89 ~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~~~----~~~~~~a~~i~ 156 (505)
++..+ .+..++..|...|.. .+++++|+..|++... ..|+ ...+..+...+.. .+++++|...+
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~----~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR----DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS----STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH----cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66543 355566666666655 5666666666666644 2222 4455555555555 45566666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHH
Q 010642 157 RYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
++..+. +.+...+..|..+|.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHH
Confidence 665554 122334444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.6e-08 Score=89.08 Aligned_cols=158 Identities=7% Similarity=-0.073 Sum_probs=73.3
Q ss_pred HHHHHHCCChhHHHHHHHHchhcc--CCCCCC-HHHHHHHHHHHHhccChHHHHHHHHHHHHc----CCCC-chhHHHHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREE--SGCKPD-DVTCLLVLQACAHLGALEFGEKIHRYISEH----GYGS-KMNLCNSL 174 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~pd-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~l 174 (505)
...|...|++++|...|.+..... .+-++. ..+|..+...+...|++++|...+++.++. |-+. ...+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666655555543310 010000 234555555555666666666665555432 1000 12344455
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPE-----KD----VVSWSAMISGLAMNGHGRDAIESFGAMQRA----GVFPDD-QTFTGV 240 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~l 240 (505)
..+|.+ |++++|...|++..+ .+ ..+++.+...|.+.|++++|+..|++.... +..+.. .++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555555 555555555554321 00 234555555555666666666665555431 111111 133344
Q ss_pred HHHHhccCCHHHHHHHHHHHh
Q 010642 241 LSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~ 261 (505)
..++...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444445555555555555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=83.04 Aligned_cols=122 Identities=12% Similarity=-0.009 Sum_probs=102.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34556678899999999998874 334 4566778899999999999999999998 5556 5779999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHH-HHHHHh
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKEL-REFMNE 364 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 364 (505)
++++|+..++++++..|.++.++..+...|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877665 466655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=6e-06 Score=76.07 Aligned_cols=213 Identities=13% Similarity=0.128 Sum_probs=140.6
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhcCCC---CChhHHHHHHHHH----HhC---CCh
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--SLGMAFEVFKGMPE---KDVVSWSAMISGL----AMN---GHG 215 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~~m~~---~~~~~~~~li~~~----~~~---g~~ 215 (505)
..++|.+..+.+++.+ |.+..+|+.--..+...| ++++++..++.+.. .+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457777777777765 556667777777777777 78888888877652 3455666554444 444 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC------hH
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD--EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL------LD 287 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~ 287 (505)
++++++++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+. -+-|...|+.-...+.+.++ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888775433 5566666555666667666 778888887763 22344555555555555555 77
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHHHHHHHHhc---CCCCchHHHHHHHHHhCCCHHHHHHHHHH
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL-GERVIEHLIELK---AQESGDYVLLLNLYSSVGDWEKVKELREF 361 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 361 (505)
++++.++++ ...| |...|+.+-..+.+.|+... ...+.+++.+.+ +.++..+..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 777777766 3334 56677777777766666333 445666655554 56666777788888888888888888887
Q ss_pred HHh
Q 010642 362 MNE 364 (505)
Q Consensus 362 m~~ 364 (505)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-06 Score=77.80 Aligned_cols=159 Identities=8% Similarity=-0.016 Sum_probs=112.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCc----chHHH
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGV-FPDDQ----TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNI----HHYGC 275 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~ 275 (505)
.+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...+++......-.++. ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888775321 22211 23345666677778888888888887631112221 25778
Q ss_pred HHHHHHhcCChHHHHHHHHHC-----CC---CCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-----GV---KPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYV 340 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 340 (505)
+...|...|++++|...++++ .. .|. ..++..+...|...|++++|...+++.++..+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888776 11 112 3377888899999999999999999988765222 45788
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHH
Q 010642 341 LLLNLYSSVGD-WEKVKELREFMN 363 (505)
Q Consensus 341 ~l~~~~~~~g~-~~~a~~~~~~m~ 363 (505)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=78.43 Aligned_cols=141 Identities=10% Similarity=-0.104 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccC
Q 010642 69 TTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGA 148 (505)
Q Consensus 69 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~ 148 (505)
..+...+...|++++|...|++...++..+|..+...|.+.|++++|+..|++... . .+.+...+..+..++...|+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~-~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--R-DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h-CccchHHHHHHHHHHHHccc
Confidence 34455566666666676666666666666666666666666666666666666655 1 12344555566666666666
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010642 149 LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRA 228 (505)
Q Consensus 149 ~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 228 (505)
+++|.+.++.+.+.. +.+.... |...|. .........|..+..+|.+.|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLID------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEE------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHH------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666542 1111000 000000 000011245556666666666666666666666653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-06 Score=81.73 Aligned_cols=337 Identities=10% Similarity=-0.041 Sum_probs=203.9
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-cHHHHHHHHHHHHh-CC-CCChhHHHHHHHHHHh----CCCH
Q 010642 9 SSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCS-LMGGLQIHARVLRD-GY-QLDSQLMTTLMDLYST----FEKS 81 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~g~~ 81 (505)
|+++.+..+|++.+.. .|+...|..-+.-..+.++ .+....+|+.++.. |. ..+..+|...+..+.. .+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788889999988874 4688888888877666653 34567788877764 43 3466788888776542 3568
Q ss_pred HHHHHHHhcCCC-C--Ch-hHHHHHHHHHH-------------HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHH
Q 010642 82 FEACKLFDEIPQ-R--DT-VAWNVLISCYI-------------RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACA 144 (505)
Q Consensus 82 ~~A~~~~~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~ 144 (505)
+.+.++|++... | +. ..|......-. ..+.+..|..+++.+.....+ .+...|...+.--.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHh
Confidence 889999987754 2 11 12222211100 012233344444444330000 12234444333322
Q ss_pred hc--cC-----hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C-ChhHHHHHHHHHHhCCCh
Q 010642 145 HL--GA-----LEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-K-DVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 145 ~~--~~-----~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~-~~~~~~~li~~~~~~g~~ 215 (505)
.. +- .+.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++... | +...|. .|+...+.
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTC
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcch
Confidence 11 11 345778999988864 66788888889999999999999999986532 3 222332 23332222
Q ss_pred HHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 216 RDAIESFGAMQRA---------GVFP---DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 216 ~~A~~~~~~m~~~---------g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
++. ++.+.+. +..+ ....|...+....+.+..+.|..+|+.. ...+ .+...|......-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH
Confidence 222 2222211 0011 1234566666666778899999999999 4212 2334444333333333
Q ss_pred C-ChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHH
Q 010642 284 G-LLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELRE 360 (505)
Q Consensus 284 g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 360 (505)
+ +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+++++. .....|...+..-...|+.+.+..+++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 699999999887 222234566777777788899999999999972 334567777777778899999999888
Q ss_pred HHHh
Q 010642 361 FMNE 364 (505)
Q Consensus 361 ~m~~ 364 (505)
++.+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=77.74 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=87.3
Q ss_pred CCcC-CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 265 GILP-NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 265 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
.+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++.+..|.++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3344 3456777788888899999999999888 4455 57789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+..+|...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.4e-07 Score=81.67 Aligned_cols=163 Identities=8% Similarity=-0.003 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cc
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDD-----QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IH 271 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 271 (505)
.+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556677777788887777776654222111 12334455567778888888888877642111111 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--C----C
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--E----S 336 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~----~ 336 (505)
.|+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++..+..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777788888888888888888766 11222 257788888999999999999999998776421 1 3
Q ss_pred chHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010642 337 GDYVLLLNLYSSVGDWEKV-KELREFMN 363 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 363 (505)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688899999999999999 77777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.6e-06 Score=76.99 Aligned_cols=160 Identities=7% Similarity=-0.065 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---Ch------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 010642 173 SLIAMYSKCGSLGMAFEVFKGMPEK---DV------VSWSAMISGLAMNGHGRDAIESFGAMQRAGVF-PD----DQTFT 238 (505)
Q Consensus 173 ~l~~~y~~~g~~~~A~~~~~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 238 (505)
..+..+...|++++|..++++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788889999999888875432 11 12334666677778999999999998874222 23 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhc----CCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-HHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDF----GILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-STIW 305 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 305 (505)
.+...|...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999887421 11222 236788888999999999999988876 22233 5688
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHHHhc
Q 010642 306 RTLLGACRIHKH-VTLGERVIEHLIELK 332 (505)
Q Consensus 306 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~ 332 (505)
..+..++...|+ +++|...++++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 888899999995 699999999887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=6.8e-06 Score=81.65 Aligned_cols=323 Identities=7% Similarity=-0.065 Sum_probs=198.1
Q ss_pred hcC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHH
Q 010642 7 MSS-SPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEK-SFEA 84 (505)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 84 (505)
+.| +...|..+|+.+... -|. ++++.+.++|+..+.. .|+..+|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887753 232 7899999999999874 4799999999988777663 3445
Q ss_pred HHHHhcCC------CCChhHHHHHHHHHH----HCCChhHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHh-------
Q 010642 85 CKLFDEIP------QRDTVAWNVLISCYI----RNQRTRDALCLFDNLNREESGCKPDD--VTCLLVLQACAH------- 145 (505)
Q Consensus 85 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~------- 145 (505)
..+|+... ..+...|...+.-+. .+++.+.+..+|++... +++.. ..|..... +..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~----~P~~~~~~lw~~Y~~-fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ----TPMGSLSELWKDFEN-FELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT----SCCTTHHHHHHHHHH-HHHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh----ChhhhHHHHHHHHHH-HHHHhccccH
Confidence 56666533 236678888877654 34678889999999976 33321 12221111 111
Q ss_pred -------ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHhcCCC---CChhHHHHHHHH
Q 010642 146 -------LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--S-----LGMAFEVFKGMPE---KDVVSWSAMISG 208 (505)
Q Consensus 146 -------~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~-----~~~A~~~~~~m~~---~~~~~~~~li~~ 208 (505)
.+.+..|..++..+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1223344445544443210112335555555433221 1 3456677777653 456788888888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc---C--------CcCCcchHHHHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF---G--------ILPNIHHYGCVV 277 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~--------~~p~~~~~~~li 277 (505)
+.+.|+.++|..+|++.... |....+.. +|....+.++. ++.+.+.+ . .......|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 88999999999999999986 55433222 22221111111 22222211 0 001124577777
Q ss_pred HHHHhcCChHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 278 DLLGRAGLLDQAYQLITSMGVKP--DSTIWRTLLGACRIHK-HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
..+.+.+.++.|..+|+++ ..| +...|......-...+ +.+.|..+|+...+..|.++..+...++...+.|+.+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 7777888999999999998 223 3444543222222233 69999999999999888777777777888889999999
Q ss_pred HHHHHHHH
Q 010642 355 VKELREFM 362 (505)
Q Consensus 355 a~~~~~~m 362 (505)
|..+|++.
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99999986
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-07 Score=73.80 Aligned_cols=126 Identities=10% Similarity=-0.023 Sum_probs=88.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555666667777777777766653 2234556666777777777777777777766 2233 4667778888888
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVL--LLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
..|++++|...++++.+..|.+...+.. ++..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999988888887776644 4444778889999988887664
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=86.46 Aligned_cols=50 Identities=8% Similarity=-0.111 Sum_probs=34.5
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC-CCHHHHHHHHHHHHh
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV-GDWEKVKELREFMNE 364 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 364 (505)
.|+.++|.+.+++..+..|.+......+...+.+. +.+++|.++|.+..+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57777777777777777776655555555555555 667788888877654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-07 Score=71.33 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666655542 1223445555555666666666666666555 3333 3556666666666
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
..|++++|...|+++++++|.+...+..|.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 677777777777777777666665555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=68.79 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCC-CCHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVK-PDSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 312 (505)
..+..+...+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|..+++++ ... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666543 1223445566666666667777776666665 222 2456677777777
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
...|+++.|...++++.+..|.++..+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 7888888888888888887777777777666666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=75.56 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=83.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+..|.++..+..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677788888999999999999887 3444 6778888889999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=80.39 Aligned_cols=162 Identities=6% Similarity=-0.054 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCh------hHHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPE---KDV------VSWSAMISGLAMNGHGRDAIESFGAMQRAGV---FPD--DQ 235 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 235 (505)
.+...+..|...|++++|.+.+++..+ ... ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677778888888777764321 111 1233455566777888888888888765321 111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-H
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-S 302 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~ 302 (505)
+++.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7777888888888888888888887732111122 247778888888888988888888776 11111 5
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLG-ERVIEHLIEL 331 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 331 (505)
.+|..+...+...|++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888888899999999 7778777654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.9e-07 Score=70.58 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=89.0
Q ss_pred CcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 266 ILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 266 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 356777888999999999999999987 4445 578899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhC
Q 010642 343 LNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=69.84 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444555555555555544431 1123344444555555555555555555544 2222 4556666677777
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
..|++++|...+++..+..|.+...+..+..++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777777677777777666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=69.42 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 312 (505)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555555666666666666666666553 1224455666666677777777777777665 2233 456777777788
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCH
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDW 352 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 352 (505)
...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888777788888888777664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=75.64 Aligned_cols=122 Identities=6% Similarity=-0.086 Sum_probs=54.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK--MNLCNSLIAMY 178 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~l~~~y 178 (505)
.+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..+....+.. .|. ..++..+..++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 334444444555555555544432 12322233333334444455555555444332221 110 12344445555
Q ss_pred HhcCCHHHHHHHHhcCCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 179 SKCGSLGMAFEVFKGMPE-K-----DVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
.+.|++++|+..|++... + ....+.....++.+.|+.++|..+|+++..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555554421 1 112334444555566666666666666655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=74.94 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQR----AGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
.++..+...|...|++++|...+++... .+..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 11111 11234444444555555555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-06 Score=69.65 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAM 177 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~ 177 (505)
.|..+...+...|++++|...|++.... .+.+..++..+...+...|++++|...+.+..+.. +.+..++..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555555555555555555555441 12234444445555555555555555555555442 2333444444444
Q ss_pred HHhcCCHHHHHHHHhc
Q 010642 178 YSKCGSLGMAFEVFKG 193 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~ 193 (505)
|.+.|++++|...|++
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 91 NMALGKFRAALRDYET 106 (166)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 4444444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=76.05 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=50.2
Q ss_pred CCCHHHHHH---HHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhcc--CCCCC-CHHHHHHHHHHHHhccChHH
Q 010642 78 FEKSFEACK---LFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREE--SGCKP-DDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 78 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~p-d~~t~~~ll~~~~~~~~~~~ 151 (505)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++..... .+..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 3333222334455555555555555555555555543310 11111 12334444445555555555
Q ss_pred HHHHHHHHHHc----CCC--CchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 152 GEKIHRYISEH----GYG--SKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 152 a~~i~~~~~~~----~~~--~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
|...+.+..+. +.. ....++..+...|...|++++|...|++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555544432 101 1123344444455555555555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-07 Score=82.94 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=39.5
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHH
Q 010642 32 ACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIR 108 (505)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 108 (505)
.+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+..+|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444455555555555444443 22344444444444444444444444444332 133344444444444
Q ss_pred CCChhHHHHHHHHc
Q 010642 109 NQRTRDALCLFDNL 122 (505)
Q Consensus 109 ~g~~~~A~~~~~~m 122 (505)
.|++++|+..|++.
T Consensus 85 ~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 85 MESYDEAIANLQRA 98 (281)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=82.01 Aligned_cols=93 Identities=9% Similarity=-0.071 Sum_probs=79.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...|+++++..|.+...+..+..++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57777888888888888888888887 4444 577888899999999999999999999999999999999999999999
Q ss_pred CCCHHHH-HHHHHHHH
Q 010642 349 VGDWEKV-KELREFMN 363 (505)
Q Consensus 349 ~g~~~~a-~~~~~~m~ 363 (505)
.|++++| ..+++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988 44666664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.4e-07 Score=75.37 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=78.6
Q ss_pred hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHH-HHhcCch--h
Q 010642 245 SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGA-CRIHKHV--T 319 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 319 (505)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666543 1234456666666677777777777777665 2223 45566666666 6677777 8
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 320 LGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
+|...++++.+..|.++..+..+...|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888887777777788888888888888888888776643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.6e-07 Score=81.66 Aligned_cols=131 Identities=13% Similarity=-0.067 Sum_probs=73.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC--cchHHHHHHHHHh
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN--IHHYGCVVDLLGR 282 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 282 (505)
....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 444555566666666666655442 233333333344556666666666666644331 1 111 1245555666667
Q ss_pred cCChHHHHHHHHHC--CCC-CC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 283 AGLLDQAYQLITSM--GVK-PD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 283 ~g~~~~A~~~~~~~--~~~-p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.|++++|++.|++. +-. |. ...+.....++...|+.++|...|+++....|. ...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 77777777777666 211 32 234555566677777777777777777777776 44333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0001 Score=68.71 Aligned_cols=179 Identities=9% Similarity=0.082 Sum_probs=120.4
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhcc-ChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNSLIA 176 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~l~~ 176 (505)
++.+-....+.+..++|+++++++.. +.|+. ..|+.--.++...+ .++++.+.++.+++.. +.+..+|+.-..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~----~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR----MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44444444555666789999998877 44544 44566666666677 5888999998888775 567778877777
Q ss_pred HHHhc-C-CHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010642 177 MYSKC-G-SLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGR--------DAIESFGAMQRAGVFPDDQTFTGVLSA 243 (505)
Q Consensus 177 ~y~~~-g-~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~ 243 (505)
.+.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 77766 6 788888888887754 5566666555555555555 888888888876443 66677766666
Q ss_pred HhccCC-------HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC
Q 010642 244 CSHCGL-------VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL 285 (505)
Q Consensus 244 ~~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 285 (505)
+.+.+. ++++++.+++.... .+-|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 666665 57777777777653 23345566665555655554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=71.67 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
...|..+..+|.+.|++++|...|++.. ..++..|..+..+|.+.|++++|+..|++..+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333334444444444444444443332 12333444444444444444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=73.99 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=87.5
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhCCCH-
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDL-YSTFEKS- 81 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 81 (505)
.+...|++++|+..|+...... +.+...+..+...+...|++++|...++.+++.. +.+..++..+... |...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 4566788888888888887764 2356778888888888888888888888888775 3466677777777 7778887
Q ss_pred -HHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchh
Q 010642 82 -FEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNR 124 (505)
Q Consensus 82 -~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (505)
++|...|+...+ .+..+|..+...|...|++++|+..|++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888888877643 3567778888888888888888888888766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=69.63 Aligned_cols=96 Identities=9% Similarity=-0.067 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+..|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566677788888999998888887 3344 57788888888999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhC
Q 010642 348 SVGDWEKVKELREFMNEK 365 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~ 365 (505)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=5.8e-06 Score=64.60 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
+|..+...+.+.|++++|+..|+++.. . .+.+..++..+...+...|++++|...++++.+.
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 334444444444444444444444433 1 1122333344444444444444444444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=64.82 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=77.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCchHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ--ESGDYVLLLN 344 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 344 (505)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...+++..+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777778888888888888776 2233 5667777888888888888888888888888888 7788888888
Q ss_pred HHHhC-CCHHHHHHHHHHHHhCCC
Q 010642 345 LYSSV-GDWEKVKELREFMNEKGL 367 (505)
Q Consensus 345 ~~~~~-g~~~~a~~~~~~m~~~~~ 367 (505)
.|... |++++|.+.+++..+..-
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 88888 888888888888876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-06 Score=66.64 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=73.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++.+..|.++..|..+..+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666777778888887777776 3334 466777888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=7.9e-06 Score=64.43 Aligned_cols=60 Identities=8% Similarity=-0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 010642 99 WNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISE 161 (505)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 161 (505)
|..+...+...|++++|+..|++... . .+.+...+..+...+...|++++|.+.+..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIE--L-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 33444444444444444444444433 0 112233333344444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.9e-06 Score=65.53 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=87.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.+...+..+..+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567788889999999999999999998 5555 6778899999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=69.36 Aligned_cols=94 Identities=15% Similarity=0.028 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010642 168 MNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSAC 244 (505)
Q Consensus 168 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 244 (505)
...+..+...+.+.|++++|...|++.. ..+...|..+..+|...|++++|+..|++...... .+...+..+..++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3444445555555555555555555442 23444555555555566666666666665554321 1334455555556
Q ss_pred hccCCHHHHHHHHHHHhh
Q 010642 245 SHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~ 262 (505)
...|++++|...|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00015 Score=67.52 Aligned_cols=211 Identities=9% Similarity=0.024 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-CHHHHHHHHhcCCC---CChhHHHHHHHHHHHC-C-ChhHHHHHHH
Q 010642 47 MGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-KSFEACKLFDEIPQ---RDTVAWNVLISCYIRN-Q-RTRDALCLFD 120 (505)
Q Consensus 47 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 120 (505)
++|+++.+.++..+ +.+..+|+.--..+...| +++++++.++.+.. ++..+|+.-...+.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 45555555555554 234445555555555555 36666666655543 2445555555444444 4 5566666666
Q ss_pred HchhccCCCCCCHHHHHHHHHHHHhccChH--------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-------HH
Q 010642 121 NLNREESGCKPDDVTCLLVLQACAHLGALE--------FGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS-------LG 185 (505)
Q Consensus 121 ~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~--------~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~-------~~ 185 (505)
++.. .-+-|..+|+.-.-...+.+.++ ++.+..+.+++.. +.|...|+.....+.+.++ ++
T Consensus 150 k~L~---~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLL---PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTS---SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHH---hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6544 12223444444333333333333 5556666666554 4455556555555555554 45
Q ss_pred HHHHHHhcCC---CCChhHHHHHHHHHHhCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 010642 186 MAFEVFKGMP---EKDVVSWSAMISGLAMNGHG--------------------RDAIESFGAMQRAG-----VFPDDQTF 237 (505)
Q Consensus 186 ~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~g-----~~p~~~t~ 237 (505)
++.+.+++.. ..|...|+-+-..+.+.|+. ....+...++...+ -.+....+
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 5666655443 23555565555555554443 12222222222211 12455666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
..++..|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6777777777777888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=5.6e-06 Score=71.36 Aligned_cols=171 Identities=8% Similarity=-0.067 Sum_probs=96.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEK---DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVD 251 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 251 (505)
+......|++++|.+.++.-.+. ....+..+...+...|++++|+..|++..... |+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444456666666665543321 33456666667777777777777777776532 211100000 000
Q ss_pred HHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 010642 252 EGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLI 329 (505)
Q Consensus 252 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 329 (505)
.- ... .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++.
T Consensus 81 ~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00 000 01245666777778888888888888776 3334 56788888888999999999999999999
Q ss_pred HhcCCCCchHHHHHHHHHhCCCHHHHH-HHHHHHHhCC
Q 010642 330 ELKAQESGDYVLLLNLYSSVGDWEKVK-ELREFMNEKG 366 (505)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 366 (505)
+..|.+...+..+..++...++.+++. ..+..|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999988888888888888888777776 5555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=67.52 Aligned_cols=228 Identities=10% Similarity=0.012 Sum_probs=128.7
Q ss_pred HCCChh-HHHHHHHHchhccCCCCCCHHH-HHHHHHHHHhccC----------hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 108 RNQRTR-DALCLFDNLNREESGCKPDDVT-CLLVLQACAHLGA----------LEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 108 ~~g~~~-~A~~~~~~m~~~~~~~~pd~~t-~~~ll~~~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
+.|.+. +|++++..+.. +.|+..| |+.--..+...+. ++++..+++.+.... |-+..+|+.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444444 67777777755 4454433 3322222222221 566677777777664 55677777766
Q ss_pred HHHHhcC--CHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 010642 176 AMYSKCG--SLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGH-GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHC-- 247 (505)
Q Consensus 176 ~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-- 247 (505)
.++.+.| .++++..+++++. .+|..+|+.-.-.+...|. ++++++.+.++.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 6666777 3777777777765 3466677766666667777 47788888887775433 555555444333332
Q ss_pred ------------CCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc-----------CChHHHHHHHHHC-CCCCCHH
Q 010642 248 ------------GLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA-----------GLLDQAYQLITSM-GVKPDST 303 (505)
Q Consensus 248 ------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 303 (505)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 3466677777766652 223444555444444443 3456666666666 444543
Q ss_pred HHHHHHH-----HHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 304 IWRTLLG-----ACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 304 ~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.|..+-. +....|..++....+.++.+++|....-|.-|..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2322111 1123455666677777777777766555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=8.3e-06 Score=62.99 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHK 316 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 316 (505)
.+...+...|++++|...+++.... .+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3333444444444444444444331 1112333344444444444444444444443 1122 2344444555555555
Q ss_pred chhHHHHHHHHHHHhcCCCCchHHH
Q 010642 317 HVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
++++|...+++..+..|.++..+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5555555555555555544444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.8e-06 Score=65.46 Aligned_cols=97 Identities=7% Similarity=-0.089 Sum_probs=76.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++.+..|.++..+..+..+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556667777777778888887777776 3333 4667788888888888888888888888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8888888888888887653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-06 Score=65.98 Aligned_cols=95 Identities=11% Similarity=-0.054 Sum_probs=82.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++..+..+..+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45666777888999999999999888 4445 577888888999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 010642 349 VGDWEKVKELREFMNEK 365 (505)
Q Consensus 349 ~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=78.04 Aligned_cols=119 Identities=8% Similarity=-0.038 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC----------------HHHHHHHHHHHHhccChHHHHHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD----------------DVTCLLVLQACAHLGALEFGEKIHRY 158 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd----------------~~t~~~ll~~~~~~~~~~~a~~i~~~ 158 (505)
+...|..+...|.+.|++++|+..|++... +.|+ ...|..+..++.+.|++++|...+++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~----~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS----WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677777777777777777777777765 2232 24444445555555555555555555
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHH
Q 010642 159 ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDA 218 (505)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 218 (505)
+++.. +.+..++..+..+|...|++++|...|++.. ..+...+..+...+.+.|+.++|
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55443 3344444444444444444444444444332 12333444444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=9.5e-06 Score=62.64 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 446777888899999999999999988 3344 67788889999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhCC
Q 010642 348 SVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 348 ~~g~~~~a~~~~~~m~~~~ 366 (505)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999887653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=65.23 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...+++..+..|.++..+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34444555555555555555555555 44444 34555555556666666666666666666666555566666666
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 010642 346 YSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 346 ~~~~g~~~~a~~~~~~m~~ 364 (505)
|...|++++|...+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.8e-06 Score=68.40 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
.+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|.+...|..+..+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444455555555555555544 2222 3445555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 010642 350 GDWEKVKELREFMNE 364 (505)
Q Consensus 350 g~~~~a~~~~~~m~~ 364 (505)
|++++|...|++..+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=74.78 Aligned_cols=144 Identities=6% Similarity=-0.090 Sum_probs=72.1
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC--------------HH
Q 010642 72 MDLYSTFEKSFEACKLFDEIPQR---DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD--------------DV 134 (505)
Q Consensus 72 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd--------------~~ 134 (505)
+......|+++.+.+.++.-.+. ....|..+...+.+.|++++|+..|++.... ..-.|+ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHH
Confidence 33444556666666666544331 3456777778888888888888888887661 001111 14
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHh
Q 010642 135 TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAM 211 (505)
Q Consensus 135 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 211 (505)
.+..+..++...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++.. ..+...+..+...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 45555555555666666666666555543 3344455555555555555555555555432 1233344444444444
Q ss_pred CCChHH
Q 010642 212 NGHGRD 217 (505)
Q Consensus 212 ~g~~~~ 217 (505)
.++.++
T Consensus 169 ~~~~~~ 174 (198)
T 2fbn_A 169 LKEARK 174 (198)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 443333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-06 Score=65.48 Aligned_cols=93 Identities=9% Similarity=-0.020 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-------hHHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-------DYVLL 342 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 342 (505)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++.++..|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777776 4444 4667777888888888888888888888887765443 56667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHh
Q 010642 343 LNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 343 ~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7788888888888888887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=62.96 Aligned_cols=107 Identities=8% Similarity=-0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 313 (505)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555556666666666555542 1223455555666666666666666666655 3333 3556666667777
Q ss_pred hcCchhHHHHHHHHHHHhc------CCCCchHHHHHH
Q 010642 314 IHKHVTLGERVIEHLIELK------AQESGDYVLLLN 344 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 344 (505)
..|++++|...++++.+.. |.+......+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7777777777777777766 555444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=65.64 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGA 311 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 311 (505)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666666777777777777777777653 2234566777777888888888888888776 3344 47788888999
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 312 CRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
+...|++++|...++++++..|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999888765443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=65.53 Aligned_cols=101 Identities=10% Similarity=-0.079 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRI 314 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 314 (505)
+..+...+.+.|++++|...|+..... .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334444555566666666666665542 1223445555666666666666666666655 2223 34556666667777
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchH
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDY 339 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (505)
.|++++|...++++.+..|.++...
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchH
Confidence 7777777777777777776655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-05 Score=62.84 Aligned_cols=107 Identities=8% Similarity=-0.078 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLL 309 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 309 (505)
.+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444444455555544444442 1222 334445555555555566555555554 2223 455666666
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
.++...|++++|...+++..+..|.+...+..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 677777777777777777777777665555444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=62.43 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|..+..+|...|++++|++.|++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555556666666666665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00073 Score=62.59 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=152.7
Q ss_pred hccCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 010642 145 HLGAL-EFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS----------LGMAFEVFKGMP---EKDVVSWSAMISGLA 210 (505)
Q Consensus 145 ~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~----------~~~A~~~~~~m~---~~~~~~~~~li~~~~ 210 (505)
+.|.+ ++|....+.++..+ |.+..+|+.--......|. ++++..+++.+. .++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44544 47899999998875 5556666654444443333 678888888775 457788888888888
Q ss_pred hCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc----
Q 010642 211 MNGH--GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL-VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA---- 283 (505)
Q Consensus 211 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 283 (505)
+.|+ +++++.+++++.+...+ |...|+.-...+...|. ++++++.+..+.+. -+-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999986544 66777766666777787 68999999999974 234566666666555554
Q ss_pred ----------CChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHHHhcCCCCchHH
Q 010642 284 ----------GLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH-----------KHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 284 ----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++.+..|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888887 3445 677787655555444 4688999999999999998855544
Q ss_pred HHHHHH---HhCCCHHHHHHHHHHHHh
Q 010642 341 LLLNLY---SSVGDWEKVKELREFMNE 364 (505)
Q Consensus 341 ~l~~~~---~~~g~~~~a~~~~~~m~~ 364 (505)
.++... ...|..+++...+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 443322 245777788888888775
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=76.15 Aligned_cols=118 Identities=7% Similarity=-0.096 Sum_probs=62.3
Q ss_pred hccCCHHHHHHHHHHHhhhc---CCcCC-cchHHHHHHHHHhcCChHHHHHHHHHC-------CCCCC-HHHHHHHHHHH
Q 010642 245 SHCGLVDEGMMFLDRMSKDF---GILPN-IHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKPD-STIWRTLLGAC 312 (505)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~ 312 (505)
...|+.+++..+++...... +..+. ..++..+...|...|++++|..++++. .-+|. ..++..++..|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34455666665555544311 11111 234455566666666666666666554 11121 33555666666
Q ss_pred HhcCchhHHHHHHHHHHHhc---CCC----CchHHHHHHHHHhCCCHHHHHHHHHHH
Q 010642 313 RIHKHVTLGERVIEHLIELK---AQE----SGDYVLLLNLYSSVGDWEKVKELREFM 362 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 362 (505)
...|+++.|..++++..... +.+ ...+..++..+...|++++|...+.+.
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66777777777766665543 111 123445555666667777766665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-05 Score=62.79 Aligned_cols=100 Identities=8% Similarity=-0.165 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHH
Q 010642 233 DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLG 310 (505)
Q Consensus 233 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 310 (505)
+...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555556666666666666666665542 1223455566666666666666666666665 2233 4556667777
Q ss_pred HHHhcCchhHHHHHHHHHHHhcCC
Q 010642 311 ACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
++...|+++.|...++++.+..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 777777777777777777776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=61.47 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC---CHHHHHHHHHHHH
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP---DSTIWRTLLGACR 313 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~ 313 (505)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 33444444455555555555554432 1123334445555555555555555555554 2223 3555666666666
Q ss_pred hc-CchhHHHHHHHHHHHhcCCC
Q 010642 314 IH-KHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 314 ~~-g~~~~a~~~~~~~~~~~~~~ 335 (505)
.. |++++|.+.++++.+..|++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCC
Confidence 66 66666666666666666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=63.13 Aligned_cols=91 Identities=16% Similarity=0.102 Sum_probs=58.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHC-CCCCC-H---HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC---CchHHHHHHHH
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM-GVKPD-S---TIWRTLLGACRIHKHVTLGERVIEHLIELKAQE---SGDYVLLLNLY 346 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 346 (505)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +..+..+..+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665 22222 1 355556666777777777777777777777666 45566777777
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 010642 347 SSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 347 ~~~g~~~~a~~~~~~m~~~ 365 (505)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.4e-05 Score=75.61 Aligned_cols=118 Identities=6% Similarity=-0.091 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLV 250 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 250 (505)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+... -+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 3445566677777777776553 23456666777777777777777777777666421 1345666666667777777
Q ss_pred HHHHHHHHHHhhhcCCcCCcchHHHHHHH--HHhcCChHHHHHHHH
Q 010642 251 DEGMMFLDRMSKDFGILPNIHHYGCVVDL--LGRAGLLDQAYQLIT 294 (505)
Q Consensus 251 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 294 (505)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777666531 1123334444433 556666666666666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-05 Score=76.15 Aligned_cols=129 Identities=6% Similarity=-0.024 Sum_probs=91.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-------------CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-------------NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP- 300 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 300 (505)
.+..+...+.+.|++++|...|++..+.....+ ....|..+..+|.+.|++++|+..+++. .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444555555555555555555554211110 1367788888899999999999999887 4444
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH-HHHHHHh
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE-LREFMNE 364 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 364 (505)
+...|..+..++...|++++|...|++++++.|.+...+..+..++.+.|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888999999999999999999999999999999999999999999999988764 4555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.4e-05 Score=60.69 Aligned_cols=61 Identities=5% Similarity=-0.051 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++...
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455555555566666666555555432 12334444555555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-05 Score=64.25 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC--C----CCc
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPD----STIWRTLLGACRIHKHVTLGERVIEHLIELKA--Q----ESG 337 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~ 337 (505)
.+..+...+...|++++|.+.+++. ...++ ...+..+...+...|++++|...+++..+..+ . ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444445555555555555555443 00011 33555666667777777777777777665531 1 123
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 338 DYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 338 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566788888888888888888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=64.12 Aligned_cols=62 Identities=8% Similarity=-0.079 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHh-------cCCCCchH----HHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIEL-------KAQESGDY----VLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..|..+..++...|++++|+..+++.++. +|++...| .....++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888899999999999999999998 89888888 9999999999999999999998764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=61.63 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------CchHHH
Q 010642 271 HHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-------SGDYVL 341 (505)
Q Consensus 271 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 341 (505)
..+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566677777788888888888776 2223 56677888888888999999999999988887655 667888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 342 LLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+..+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=79.61 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=69.0
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 320 (505)
.+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666542 1223455666666666666666666666665 3334 35566666677777777777
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHH--HHhCCCHHHHHHHHH
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNL--YSSVGDWEKVKELRE 360 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 360 (505)
|.+.++++.+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777666666666555 666677777776665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.2e-05 Score=58.92 Aligned_cols=96 Identities=6% Similarity=-0.060 Sum_probs=55.4
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCc---chHHHHHHHHHhcCChHHHHHHHHHC-CCCCC----HHHHHHHHHHH
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNI---HHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD----STIWRTLLGAC 312 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 312 (505)
...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++. ...|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 344455566666666666655431 1112 24455555666666666666666655 22232 44566666677
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCch
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGD 338 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (505)
...|++++|...++++.+..|.++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 77777777777777777777665443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00023 Score=69.37 Aligned_cols=120 Identities=7% Similarity=-0.106 Sum_probs=53.9
Q ss_pred hCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHH
Q 010642 211 MNGHGRDAIESFGAMQR----AGVFPD-DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLG 281 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~ 281 (505)
..|++++|..++++... .+..+. ..++..+...+...|++++|..+++.+.....-.. ....+..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34445555555544432 122222 23344455555555555555555555443211111 1234455555555
Q ss_pred hcCChHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 010642 282 RAGLLDQAYQLITSM-------GVKPD--STIWRTLLGACRIHKHVTLGERVIEHLIE 330 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 330 (505)
..|++++|..++++. +..|. ...+..+...+...++++.|...+.+..+
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555655555555444 11111 12333444444555566666555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=64.05 Aligned_cols=97 Identities=8% Similarity=-0.008 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC----CcchHHHHHHHHHhcCChHHHHHHHHHC-------CCCC-CHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM-------GVKP-DST 303 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 303 (505)
++..+...+...|++++|...+++..+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444455555555555555555443210000 1234445555566666666666665554 1111 133
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
++..+...+...|++++|...+++..+..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666677777888888888887776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.5e-06 Score=63.76 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHHC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHH
Q 010642 283 AGLLDQAYQLITSM-GV---KP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 283 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 357 (505)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++.+..|.++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555555 33 13 234555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 010642 358 LREFMNE 364 (505)
Q Consensus 358 ~~~~m~~ 364 (505)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-05 Score=60.24 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=36.0
Q ss_pred HHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010642 102 LISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKC 181 (505)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~ 181 (505)
+...+.+.|++++|+..|++... .-+.+...+..+..++...|++++|...++++++.. |.+..++..+..+|.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444433 011133334444444444444444444444444432 22333444444444444
Q ss_pred CCHHHHHHHHh
Q 010642 182 GSLGMAFEVFK 192 (505)
Q Consensus 182 g~~~~A~~~~~ 192 (505)
|++++|...|+
T Consensus 99 g~~~~A~~~~~ 109 (121)
T 1hxi_A 99 HNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-05 Score=71.84 Aligned_cols=90 Identities=7% Similarity=-0.036 Sum_probs=77.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 269 NIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 269 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++.++.|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888888999999999999999988 6566 4678888999999999999999999999999999988888999998
Q ss_pred HhCCCHHHHHHH
Q 010642 347 SSVGDWEKVKEL 358 (505)
Q Consensus 347 ~~~g~~~~a~~~ 358 (505)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.2e-05 Score=63.35 Aligned_cols=64 Identities=3% Similarity=-0.009 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...|..+..++...|+++.|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577778888889999999999999999999988889999999999999999999998887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-05 Score=72.64 Aligned_cols=145 Identities=10% Similarity=-0.050 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4556667777788888888888877653 344331 22233333332211 1 12566677777
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH-HhCCCHHHHHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY-SSVGDWEKVKE 357 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~ 357 (505)
.+.|++++|...+++. ...| +...|..+..++...|++++|...|+++.+..|.+...+..|.... ...+..+.+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888887777776 3334 4667777777788888888888888888777777777777666663 34556677777
Q ss_pred HHHHHHhC
Q 010642 358 LREFMNEK 365 (505)
Q Consensus 358 ~~~~m~~~ 365 (505)
+|++|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=72.62 Aligned_cols=124 Identities=9% Similarity=0.009 Sum_probs=97.3
Q ss_pred HHhccCCHHHHHHHHHHHhhhcC--CcC----CcchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFG--ILP----NIHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-STIWR 306 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 306 (505)
.+...|++++|..++++..+... +.| ...+++.|...|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999998888765321 112 2457888999999999999999988876 34455 44789
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 307 TLLGACRIHKHVTLGERVIEHLIEL-----KAQESG---DYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.|...|...|++++|+.+++++++. +|+.+. +...|..++...|++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 566554 34577888899999999999999998754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.1e-05 Score=61.12 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHhhhcC--CcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010642 247 CGLVDEGMMFLDRMSKDFG--ILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGE 322 (505)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 322 (505)
.|++++|+..|++..+. + .+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666542 1 1223455666666677777777777777666 3333 3556677777777778888888
Q ss_pred HHHHHHHHhcCCCCc
Q 010642 323 RVIEHLIELKAQESG 337 (505)
Q Consensus 323 ~~~~~~~~~~~~~~~ 337 (505)
..+++..+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888887777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-05 Score=72.59 Aligned_cols=114 Identities=4% Similarity=-0.082 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRI 314 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 314 (505)
..+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34566777888999999999999988763 23321 1223344444444332 2377888899999
Q ss_pred cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 315 HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 315 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.|++++|+..++++++..|.+...|..+..+|...|++++|...|++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=5e-05 Score=62.86 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...+++++++.|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 346677777788888888888887776 3344 466788888888888888888888888888888775
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00078 Score=67.94 Aligned_cols=167 Identities=8% Similarity=-0.013 Sum_probs=115.7
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--C
Q 010642 185 GMAFEVFKGMP---EKDVVSWSAMISGLAMNGH----------GRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG--L 249 (505)
Q Consensus 185 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 249 (505)
++|.+.++++. ..+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 44555555443 2233455555555555454 67788888887775433 4556666666666777 6
Q ss_pred HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcC-ChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc-----------
Q 010642 250 VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAG-LLDQAYQLITSM-GVKP-DSTIWRTLLGACRIH----------- 315 (505)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 315 (505)
++++...++++.+. .+-+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888764 2334556666666667777 788888888887 5555 566777766665553
Q ss_pred ---CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 316 ---KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 316 ---g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 668999999999999999999999999999988887554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00038 Score=68.47 Aligned_cols=123 Identities=9% Similarity=-0.084 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 199 VVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPD--------------DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34677777888888888888888888876322111 467888888899999999999999998863
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHH
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGER 323 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 323 (505)
.+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+..++...++.+++.+
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335677888889999999999999999888 66664 4477777788888888777664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=67.70 Aligned_cols=119 Identities=8% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCC-------------------CChhHHHHHHHHHHHCCChhHHHHHHHHchhccC
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQ-------------------RDTVAWNVLISCYIRNQRTRDALCLFDNLNREES 127 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 127 (505)
.+..+...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..+++..+ .
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 355556666677777777766665442 1345677777777777777777777777765 1
Q ss_pred CCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010642 128 GCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFE 189 (505)
Q Consensus 128 ~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 189 (505)
-+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++.+.++.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345666777777777777777777777777764 4456666667777766666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00028 Score=52.86 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+...|..+...+...|++++|+..++++++..|.++..|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999987653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00044 Score=56.23 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC-------------HHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD-------------DVTCLLVLQACAHLGALEFGEKIHRYISEHGY 164 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd-------------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 164 (505)
.+......+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|...+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~----l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l-- 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME----ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH----HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 345556666777777777777777655 2222 114444455555555555555555544442
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCChhHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 165 GSKMNLCNSLIAMYSKCGSLGMAFEVFKG---MPEKDVVSW----SAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 165 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~---m~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|++ +...+...| .....++...|++++|+..|++..+
T Consensus 87 --------------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 000 011223455 6666677777777777777777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=69.38 Aligned_cols=119 Identities=11% Similarity=-0.051 Sum_probs=62.0
Q ss_pred hccChHHHHHHHHHHHHc-----C--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------CC-hhHHHHHH
Q 010642 145 HLGALEFGEKIHRYISEH-----G--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE----------KD-VVSWSAMI 206 (505)
Q Consensus 145 ~~~~~~~a~~i~~~~~~~-----~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~----------~~-~~~~~~li 206 (505)
..|++++|..++++.++. | .+....+++.|..+|...|++++|+.++++..+ |+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 345555555555444432 1 111234455555555556666555555554321 11 23466666
Q ss_pred HHHHhCCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 207 SGLAMNGHGRDAIESFGAMQR-----AGV-FPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
..|...|++++|..++++... .|. .|+. .+...+-.++...+.+++|+.+|.++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665542 121 1222 23445555666677777777777777653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00027 Score=54.39 Aligned_cols=78 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 288 QAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 288 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+|.+.|++. ...| +...|..+...+...|++++|...++++.+..|.+...|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355556555 4444 46678888888888999999999999999888888888889999999999999999998887653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0003 Score=51.17 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=58.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++..+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566666777777777777777766 2233 46677777788888888888888888888888887777777777766
Q ss_pred hCC
Q 010642 348 SVG 350 (505)
Q Consensus 348 ~~g 350 (505)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=8.8e-05 Score=56.53 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCc------hh
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSK------MN 169 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~ 169 (505)
...|..+...+...|++++|+..|++.... .+.+...+..+..++...|++++|.+.++++++.. +.+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 445666666677777777777777766551 22345566666666667777777777777666643 222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGM 194 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m 194 (505)
++..+..++...|+.+.|...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4455555555555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=56.00 Aligned_cols=89 Identities=12% Similarity=-0.011 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC------CchHHH
Q 010642 270 IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE------SGDYVL 341 (505)
Q Consensus 270 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 341 (505)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++.+..|.+ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345566667777777777777777766 3333 46677777788888888888888888888888776 445556
Q ss_pred HHHHHHhCCCHHHHHHH
Q 010642 342 LLNLYSSVGDWEKVKEL 358 (505)
Q Consensus 342 l~~~~~~~g~~~~a~~~ 358 (505)
+..++...|+++.|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 66666666655554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.001 Score=53.17 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=61.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----CC
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYST----FE 79 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 79 (505)
+..-.+++++|+..|++..+.|. |+. . +...+...+.++.|.+.+++..+.| +...+..|..+|.. .+
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CcCCccCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 33444556677777777766652 222 2 4444445555666666666666554 44555555555555 55
Q ss_pred CHHHHHHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchh
Q 010642 80 KSFEACKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNR 124 (505)
Q Consensus 80 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 124 (505)
+.++|.+.|++..+ .+..++..|...|.. .+++++|+..|++..+
T Consensus 76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55555555555433 344555555555555 4555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=58.75 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=68.0
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH----------VTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
.+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|++.++++|.+..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455677777777766 3444 46677767777766665 4699999999999999999999999999998
Q ss_pred CC-----------CHHHHHHHHHHHHhCC
Q 010642 349 VG-----------DWEKVKELREFMNEKG 366 (505)
Q Consensus 349 ~g-----------~~~~a~~~~~~m~~~~ 366 (505)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999987753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0052 Score=61.95 Aligned_cols=166 Identities=9% Similarity=-0.043 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 010642 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCS----------LMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFE-- 79 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 79 (505)
++|++.++.++..++. +...|+.--.++...++ ++++...++.+++.. +.+..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4556666666664322 33445544444444444 666666666666655 335566666666666666
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHHCC-ChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhc---------
Q 010642 80 KSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQ-RTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHL--------- 146 (505)
Q Consensus 80 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~--------- 146 (505)
++++++..++++.+ +|-.+|+.-...+.+.| .++++++.++++.+ . -+-|...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~-~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--R-NFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--T-TCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--H-CCCCccHHHHHHHHHHhhccccccccc
Confidence 55666666666543 35566666666666666 66666666666654 1 223445555544444332
Q ss_pred -----cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 147 -----GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 147 -----~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+.++++.+.+..+++.. |.+..+|+-+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455556665555553 4455555555555555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0023 Score=46.32 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLI 175 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~ 175 (505)
...|..+...+...|++++|+..|++... . .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--L-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--c-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34555566666666666666666666655 1 12244555566666666666666666666666553 33455555555
Q ss_pred HHHHh
Q 010642 176 AMYSK 180 (505)
Q Consensus 176 ~~y~~ 180 (505)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=64.11 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=86.3
Q ss_pred HHHHHhcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCC---ch
Q 010642 277 VDLLGRAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQES---GD 338 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~ 338 (505)
+..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++. ++..+ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778888988888766 12222 457888999999999999999999998764 34443 36
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 010642 339 YVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCSTIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLK 410 (505)
Q Consensus 339 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 410 (505)
++.|...|...|++++|..++++..+--.. .-...||...++...|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999987642110 112368999888888888776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.024 Score=59.88 Aligned_cols=130 Identities=13% Similarity=0.068 Sum_probs=86.7
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChh
Q 010642 34 SFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTR 113 (505)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 113 (505)
..++..+...|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..|...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 556666666677777665442 11 111344567888999988887764 5678899999999999999
Q ss_pred HHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 010642 114 DALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKG 193 (505)
Q Consensus 114 ~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 193 (505)
.|.+.|.++.. |..+...+...++.+...++-+.+...| -++....+|.+.|++++|.++|.+
T Consensus 699 ~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988754 3445555556777777666666555554 134445556777777777777543
Q ss_pred C
Q 010642 194 M 194 (505)
Q Consensus 194 m 194 (505)
+
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=49.77 Aligned_cols=79 Identities=11% Similarity=-0.133 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcC
Q 010642 12 EEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEI 91 (505)
Q Consensus 12 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 91 (505)
++|+..|++..+... .+...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777777776542 255667777777777777777777777777765 335566666777777777777777776654
Q ss_pred C
Q 010642 92 P 92 (505)
Q Consensus 92 ~ 92 (505)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.003 Score=46.39 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 300 PDSTIWRTLLGACRIHKH---VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
+|...+..+..++...++ .++|..++++.++.+|.++.....+...+.+.|++++|...|+++.+..-.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467777777777765554 799999999999999999999999999999999999999999999886543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0042 Score=49.53 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHh----cCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 010642 302 STIWRTLLGACRI----HKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKG 366 (505)
Q Consensus 302 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 366 (505)
...+..|...|.. .+++++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 3344444444443 445555555555554442 23445555555555 555566665555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00048 Score=55.88 Aligned_cols=86 Identities=8% Similarity=0.044 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC----------hHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc-
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL----------LDQAYQLITSM-GVKPD-STIWRTLLGACRIH- 315 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~- 315 (505)
.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344455555544432 12233444444444444443 34677777666 45553 55777777777765
Q ss_pred ----------CchhHHHHHHHHHHHhcCCCC
Q 010642 316 ----------KHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 316 ----------g~~~~a~~~~~~~~~~~~~~~ 336 (505)
|++++|++.|+++++++|.+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0025 Score=47.55 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMS 261 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (505)
..|..+...|.+.|++++|+..|++..+.... +...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432111 22334444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.002 Score=62.29 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCC---chHHHHH
Q 010642 282 RAGLLDQAYQLITSM---------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQES---GDYVLLL 343 (505)
Q Consensus 282 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~ 343 (505)
..|++++|+.++++. +-.|+ ..+++.|..+|...|++++|+.+++++++. ++..+ .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887765 22344 357899999999999999999999998764 34444 3688999
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 010642 344 NLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 344 ~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.025 Score=43.58 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=102.8
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHH
Q 010642 210 AMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 289 (505)
.-.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-+-+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3467777777877777653 25566777776666666766667777666543222 235666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 290 YQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 290 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
..-+-.++. +.......+......|+-+.-.++...+....++++.....+.++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666542 44556677788889999999999999987777888899999999999999999999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.079 Score=55.89 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=80.7
Q ss_pred HHHCCChhHHHH-HHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010642 106 YIRNQRTRDALC-LFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL 184 (505)
Q Consensus 106 ~~~~g~~~~A~~-~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 184 (505)
....+++++|.+ ++..+. +......++..+.+.|.++.|.++.+. . ..-...+...|++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHhcCC--------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 345666666655 432221 011225555556666666666654321 1 1113345567777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhc
Q 010642 185 GMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDF 264 (505)
Q Consensus 185 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (505)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 77777776663 556777777777777777777777776643 222333333355555444433333321
Q ss_pred CCcCCcchHHHHHHHHHhcCChHHHHHHHHHC
Q 010642 265 GILPNIHHYGCVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 265 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 296 (505)
| -++.-..+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 2233334444555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.017 Score=46.17 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhc-C-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCce
Q 010642 299 KPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELK-A-QESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGC 373 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 373 (505)
.++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie------- 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE------- 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 357777777777777777 7779999999988887 5 346678888899999999999999999887632
Q ss_pred eEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCccc
Q 010642 374 STIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYVA 416 (505)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 416 (505)
|...++......+.+.+.+.|++-
T Consensus 102 -------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 -------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 233345555555666777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.019 Score=55.53 Aligned_cols=99 Identities=10% Similarity=0.020 Sum_probs=74.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhc--CCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCC-HH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDF--GILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPD-ST 303 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~ 303 (505)
.+..+.+.|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667889999999998887531 12222 356788888999999999999988876 34454 34
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHh-----cCCCCch
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIEL-----KAQESGD 338 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 338 (505)
+++.|...|...|++++|+.+++++.+. +|+.+.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 7888999999999999999999997763 5665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.22 Score=40.91 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHH
Q 010642 73 DLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFG 152 (505)
Q Consensus 73 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 152 (505)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|...|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHHHH
Confidence 4456789999999888776 4677899999999999999999999998855 44555556677887777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 153 EKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.++-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 76666665555 14455555666788888888776554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.83 Score=46.09 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH 145 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~ 145 (505)
..-+.-+..+++.+++......+.. +..+...-.....+....|+..+|......+-. .| ......+..++..+.+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~--~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--TG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--CS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh--CC-CCCcHHHHHHHHHHHH
Confidence 4445566677788899998887776 444666666677788888998888777777655 33 2234455666666665
Q ss_pred ccC
Q 010642 146 LGA 148 (505)
Q Consensus 146 ~~~ 148 (505)
.|.
T Consensus 149 ~g~ 151 (618)
T 1qsa_A 149 SGK 151 (618)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.05 Score=50.63 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHCCCCCC
Q 010642 197 KDVVSWSAMISGLA--MNGH---GRDAIESFGAMQRAGVFPD 233 (505)
Q Consensus 197 ~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~ 233 (505)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~ 231 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE 231 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence 35566666665433 2222 36778888887773 454
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0064 Score=58.79 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=67.0
Q ss_pred ccCCHHHHHHHHHHHhhhc--CCcCC----cchHHHHHHHHHhcCChHHHHHHHHHC---------CCCCCH-HHHHHHH
Q 010642 246 HCGLVDEGMMFLDRMSKDF--GILPN----IHHYGCVVDLLGRAGLLDQAYQLITSM---------GVKPDS-TIWRTLL 309 (505)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll 309 (505)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899998888776531 12222 356888999999999999999988877 345554 4789999
Q ss_pred HHHHhcCchhHHHHHHHHHHHh
Q 010642 310 GACRIHKHVTLGERVIEHLIEL 331 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~ 331 (505)
..|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0085 Score=44.13 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=30.8
Q ss_pred HHHHhcCChHHHHHHHHHC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchH
Q 010642 278 DLLGRAGLLDQAYQLITSM-GVKP-DST-IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDY 339 (505)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (505)
..+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++.+..|.+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555554 2222 233 444455555555555555555555555555544433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.017 Score=42.44 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcc-hHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcC
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIH-HYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS-TIWRTLLGACRIHK 316 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g 316 (505)
....+...|++++|...+++..+. .+.+.. .+..+...|...|++++|.+.|++. ...|+. ..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 455677888889999888888763 223455 7778888888889999998888887 334432 22211 4
Q ss_pred chhHHHHHHHHHHHhcCCC
Q 010642 317 HVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~ 335 (505)
.+.++...+++.....|.+
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5666666666666655544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.052 Score=50.52 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHH
Q 010642 234 DQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTI 304 (505)
Q Consensus 234 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 304 (505)
..+|..+...+...|++++|...+++...- + |+...|..+...+.-.|++++|.+.|++. .+.|...+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 334443333333345555555555554442 1 34333444444444455555555555444 33344433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.19 Score=41.19 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=70.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 178 YSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
...+|+++.|.++-+.+ .+...|..+.....+.|+++-|.+.|.+..+ |..+.--|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45566677666666554 3556677777777777777777777766542 233333444456665544443
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHL 328 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 328 (505)
+....+ | -++.-...+.-.|+++++.++|.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 333322 1 2444455566677777777777776543322211 22355566666665544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.048 Score=39.78 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHH
Q 010642 268 PNIHHYGCVVDLLGRAGL---LDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLL 342 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 342 (505)
++...+..+..++...++ .++|..+|++. ...| +...+..+...+...|++++|+..|+++.+..|+ ......+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 455666667776654444 67888888777 4445 4556667777788888888888888888888877 3334444
Q ss_pred HH
Q 010642 343 LN 344 (505)
Q Consensus 343 ~~ 344 (505)
..
T Consensus 83 ~~ 84 (93)
T 3bee_A 83 IE 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.057 Score=40.31 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHC------C---CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 274 GCVVDLLGRAGLLDQAYQLITSM------G---VKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~------~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
..|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++.+..|.+..+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445555555555555555544 0 1124567778888888888888888888888888888765533
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.069 Score=47.70 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=67.8
Q ss_pred HHHHHHHHHC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHHHhcCCC-CchHHHHHHHHHhC-CCHHHH
Q 010642 287 DQAYQLITSM-GVKPD---STIWRTLLGACRI-----HKHVTLGERVIEHLIELKAQE-SGDYVLLLNLYSSV-GDWEKV 355 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a 355 (505)
..|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++.+++.|.. ..+++.....++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555556655 55666 4577778888877 499999999999999999964 88999999999885 999999
Q ss_pred HHHHHHHHhCCCCCCCc
Q 010642 356 KELREFMNEKGLQTTPG 372 (505)
Q Consensus 356 ~~~~~~m~~~~~~~~~~ 372 (505)
.+.+++........+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998877664343
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.1 Score=41.66 Aligned_cols=70 Identities=10% Similarity=-0.066 Sum_probs=44.6
Q ss_pred CCcchHHHHHHHHHhcC---ChHHHHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 268 PNIHHYGCVVDLLGRAG---LLDQAYQLITSM-GVK-P--DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
++..+...+.-++++.+ +.+++..+|+.. ... | +...+..|.-++.+.|++++|.+.++.+++.+|.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 44444444555555555 334555555544 112 3 2345556677788999999999999999999998753
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.24 Score=38.01 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCchhH---HHHHHHHHHHhc-C-CCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 300 PDSTIWRTLLGACRIHKHVTL---GERVIEHLIELK-A-QESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 300 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443333 555555555544 2 1223445566666666666666666666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.23 Score=36.85 Aligned_cols=65 Identities=14% Similarity=-0.033 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc-------CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 301 DSTIWRTLLGACRIHKHVTLGERVIEHLIELK-------AQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 301 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
+....-.|...+...|+++.|...++.+.+.. ++....+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556678888999999999999999988763 233457889999999999999999999998764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=1.4 Score=34.03 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=98.0
Q ss_pred HHHHHH--HHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010642 172 NSLIAM--YSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCG 248 (505)
Q Consensus 172 ~~l~~~--y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 248 (505)
..|+++ ..-.|.+++..++..+... .+..-||-+|.-....-+-+-..++++.+-. -.| ....|
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~ 75 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQ 75 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhh
Confidence 344443 3456888888888877654 3555667666655555555555555554422 112 23445
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIE 326 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 326 (505)
++......+-.+- .+......-++.+...|+-++-.+++..+ ..+|++...-.+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5555555554442 25566777888899999999999999994 556788888899999999999999999999
Q ss_pred HHHHhcC
Q 010642 327 HLIELKA 333 (505)
Q Consensus 327 ~~~~~~~ 333 (505)
++.+.+.
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 9988774
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.53 Score=48.43 Aligned_cols=54 Identities=15% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
.-|...|+++.|..+.++.....|.+..+|..|..+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999999884
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.47 Score=37.50 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=39.0
Q ss_pred cCChHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 283 AGLLDQAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 283 ~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
.++.++|.++|+.+ .-+- ...|-....--.++|++..|.+++.+.+.+.|.+.....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 46777777777766 1111 666766666677888888888888888888876544433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.62 Score=41.63 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCC--chhHHHHHHHHHHh-----cCCHHHHHHHHhcCC--CC--ChhHHHHHHHHHHhC-CChHH
Q 010642 150 EFGEKIHRYISEHGYGS--KMNLCNSLIAMYSK-----CGSLGMAFEVFKGMP--EK--DVVSWSAMISGLAMN-GHGRD 217 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~~~--~~~~~~~l~~~y~~-----~g~~~~A~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~~ 217 (505)
..|+..++++++.. +. +...|..|...|.+ -|+.++|.+.|++.. .| +..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444442 11 23455555555555 255555655555543 22 245555555555553 66666
Q ss_pred HHHHHHHHHHCCCC
Q 010642 218 AIESFGAMQRAGVF 231 (505)
Q Consensus 218 A~~~~~~m~~~g~~ 231 (505)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.0029 Score=60.35 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=160.4
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQAC 143 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~ 143 (505)
.+.+|..|..++...+.+.+|++.|=+ ..|+..|..+|.+..+.|.+++-+..+...++ ..-.|. .=+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk--~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK--KARESY--VETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST--TCCSTT--TTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--Hhcccc--cHHHHHHHH
Confidence 456788888888888888888776643 34666788889999999999999888887766 433343 335788888
Q ss_pred HhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------------------------CCh
Q 010642 144 AHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE------------------------KDV 199 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~------------------------~~~ 199 (505)
++.+++.+-+++. -.|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8888876654443 245665667788888888888888888877652 367
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
.+|..+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-+.+++.-.. .-......|+-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 789999899998888776644433333 22222 23466678888888888888877762 223455677777777
Q ss_pred HHhcCChHHHHHHHHHC----CCCC------CHHHHHHHHHHHHhcCchhHH
Q 010642 280 LGRAGLLDQAYQLITSM----GVKP------DSTIWRTLLGACRIHKHVTLG 321 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~----~~~p------~~~~~~~ll~~~~~~g~~~~a 321 (505)
|++- ++++.++.++.. .++. ....|.-++-.|....+++.|
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 7765 566666665544 2211 223466666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.0053 Score=58.54 Aligned_cols=204 Identities=13% Similarity=0.065 Sum_probs=101.2
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEA 84 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 84 (505)
....|+..+|++.|-+. -|+..|..++.++.+.|.+++-...+..+++. ..++.+=+.|+.+|++.+++.+-
T Consensus 64 qL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 64 QLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAEL 135 (624)
T ss_dssp TTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTT
T ss_pred HHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHH
Confidence 34455666666554211 14556777777777777777777766655443 33455556777777777765543
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhc-----------------c-CCCCCCHHHHHHHHHHHHhc
Q 010642 85 CKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNRE-----------------E-SGCKPDDVTCLLVLQACAHL 146 (505)
Q Consensus 85 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------~-~~~~pd~~t~~~ll~~~~~~ 146 (505)
++++.. ||..-...+..-+...|.++.|.-+|..+... + ..-.-+..||-.+-.+|...
T Consensus 136 Eefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 136 EEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 212 (624)
T ss_dssp TSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS
T ss_pred HHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc
Confidence 333221 22222233333333333333333333322110 0 00011233444444444444
Q ss_pred ------------------------------cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHh-c
Q 010642 147 ------------------------------GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG--SLGMAFEVFK-G 193 (505)
Q Consensus 147 ------------------------------~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g--~~~~A~~~~~-~ 193 (505)
|.+++-..+++...... .....+++-|.-.|+|-. ++-+=.++|. +
T Consensus 213 ~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR 291 (624)
T ss_dssp CTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSS
T ss_pred hHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44444444444433211 335566777777777653 2222222222 2
Q ss_pred CCCC-------ChhHHHHHHHHHHhCCChHHHHH
Q 010642 194 MPEK-------DVVSWSAMISGLAMNGHGRDAIE 220 (505)
Q Consensus 194 m~~~-------~~~~~~~li~~~~~~g~~~~A~~ 220 (505)
+.-| ....|.-++-.|.+-.+++.|..
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2222 44568888888888888776643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.34 Score=38.26 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=44.0
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQT 369 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 369 (505)
..++.++|.++|+.+......-+..|......-.+.|+.+.|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34889999999999988743334566666777789999999999999988766554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.48 Score=44.97 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCCce
Q 010642 304 IWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNE-----KGLQTTPGC 373 (505)
Q Consensus 304 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 373 (505)
....++..+...|+++++...+..+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667778889999999999999999999988999999999999999999999988743 588887653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.36 E-value=4.3 Score=31.76 Aligned_cols=91 Identities=7% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcC---chhHHHHHHHHHHHhcCCC-CchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCcee
Q 010642 299 KPDSTIWRTLLGACRIHK---HVTLGERVIEHLIELKAQE-SGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQTTPGCS 374 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 374 (505)
.|+..+--.+..++.+.. +..+++.+++.+....|.. ......|.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 455555444555555443 4567888888888876643 3455678888999999999999988887643
Q ss_pred EEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 010642 375 TIGLKGVVHEFVVDDVSHPRINEIYQMLDEINKQLKIAGYV 415 (505)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 415 (505)
|...++..+-..+.++|.+.|++
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 23334555555566777777764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.34 E-value=1.3 Score=33.96 Aligned_cols=70 Identities=11% Similarity=-0.055 Sum_probs=38.9
Q ss_pred CCcchHHHHHHHHHhcCChHH---HHHHHHHC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 268 PNIHHYGCVVDLLGRAGLLDQ---AYQLITSM-GVK-P--DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 268 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
|+..+-..+.-++.+..+..+ +..+++.. ... | .......|.-++.+.|+++.|.+.++.+++..|.+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 333444444444444444333 44444444 111 2 1223344556777888888888888888888887754
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.91 E-value=2.3 Score=30.84 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 288 QAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 288 ~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
+..+-++.+ .+-|++.+..+.+.+|++.+++..|.++++-++..-.+...+|-.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444443 677899999999999999999999999999888766444455665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.78 E-value=26 Score=36.96 Aligned_cols=216 Identities=11% Similarity=-0.037 Sum_probs=117.9
Q ss_pred HHhCCCHHHHHHHHhcCCC----CC--hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---H--HHHHHHH--H
Q 010642 75 YSTFEKSFEACKLFDEIPQ----RD--TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---D--VTCLLVL--Q 141 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~--~t~~~ll--~ 141 (505)
....|+.++++.+++.... .+ +..-..+.-+....|..++++.++.........+.-+ . ..-..+. -
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4567888888888887654 12 2233344556677777777888777665421111111 1 1111222 2
Q ss_pred HHHhccChHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCC-CC--hhHHHHHHHHHHhCCChH
Q 010642 142 ACAHLGALEFGEKIHRYISEHGYGSKM--NLCNSLIAMYSKCGSLGMAFEVFKGMPE-KD--VVSWSAMISGLAMNGHGR 216 (505)
Q Consensus 142 ~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~--~~~~~~li~~~~~~g~~~ 216 (505)
++...++ +++...+..++... .+.. ..-.+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++...|+.+
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 2222333 34444444444432 1111 1223445556677887777777765432 22 222333445566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHH
Q 010642 217 DAIESFGAMQRAGVFPDDQTFT---GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLI 293 (505)
Q Consensus 217 ~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 293 (505)
.+..+.+.+... ..| ..-|. ++.-+|+..|+.....++++.+..+ ...++.....+.-++.-.|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 998888888763 122 22333 3445788899988888899988863 2233333333333444567776667776
Q ss_pred HHC
Q 010642 294 TSM 296 (505)
Q Consensus 294 ~~~ 296 (505)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 655
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.22 E-value=3.6 Score=29.88 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456677777777788899999999999999999999999999999887533 33456777664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.13 E-value=9.1 Score=41.97 Aligned_cols=163 Identities=11% Similarity=0.031 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccCh
Q 010642 70 TLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGAL 149 (505)
Q Consensus 70 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~ 149 (505)
.++..+.+.+..+.|..+..-.+. +...--.+..+|...|++++|.+.|.+... ++..+..... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~---~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL---VLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC---SCTTCCCSCS----------SH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hhcccchhhh----------hh
Confidence 344445556666666665554443 333444566677788888888888877633 3322211000 00
Q ss_pred HHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCh----hHHHHHHHHHHhCCChHHHH
Q 010642 150 EFGEKIHRYISEHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKG----MPEKDV----VSWSAMISGLAMNGHGRDAI 219 (505)
Q Consensus 150 ~~a~~i~~~~~~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~----m~~~~~----~~~~~li~~~~~~g~~~~A~ 219 (505)
.. +..+.... ...-..-|..++..+.+.|.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00111110 011234567777777777777766655432 222222 25888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010642 220 ESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDE 252 (505)
Q Consensus 220 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 252 (505)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 999888765443 3456667777776666544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.11 E-value=4.3 Score=31.27 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhc---CchhHHHHHHHHHHHhcCC-CCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 299 KPDSTIWRTLLGACRIH---KHVTLGERVIEHLIELKAQ-ESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 299 ~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.|+..+--.+..++.+. .+...++.+++.+.+.+|. ....+..|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444433334444433 3455777888777776653 2445667788888888888888888877653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.36 E-value=4.7 Score=41.50 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCC-HHHHHHHHhcCCCCCh--hH--HHHHHHHHHHCC-ChhHHHHHHHHchhc----cCCCCCCHH----
Q 010642 69 TTLMDLYSTFEK-SFEACKLFDEIPQRDT--VA--WNVLISCYIRNQ-RTRDALCLFDNLNRE----ESGCKPDDV---- 134 (505)
Q Consensus 69 ~~li~~~~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~----~~~~~pd~~---- 134 (505)
..|+..+...++ ++.|..+|+++.+.+. .+ ...+|..+.+.+ +--+|.+++.+..+. -...++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444554555666 5778888888765332 22 223333333332 223455555444320 001222111
Q ss_pred -------HHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 135 -------TCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 135 -------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
.+..-...|...|+++.|.++-++.+... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345667899999999999999884 6778999999999999999999999999886
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.26 E-value=11 Score=39.63 Aligned_cols=258 Identities=9% Similarity=-0.021 Sum_probs=130.4
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHhcCCC-CC----------hhHHHHHHHHH
Q 010642 40 CMKFCSLMGGLQIHARVLRDGYQLDS--QLMTTLMDLYSTFEKSFEACKLFDEIPQ-RD----------TVAWNVLISCY 106 (505)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~~~ 106 (505)
....|+.++++.++...+..+-..+. .....+.-+...+|..+++...+..... ++ +..-.+|.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34567777777666554321101222 2333344445566665566665544321 22 11223343444
Q ss_pred HHCCCh-hHHHHHHHHchhccCCCCCCH--HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010642 107 IRNQRT-RDALCLFDNLNREESGCKPDD--VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGS 183 (505)
Q Consensus 107 ~~~g~~-~~A~~~~~~m~~~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 183 (505)
+-.|.- +++.+.+..+.. ..- +.. ..-.++...+...|+-+....++..+.+.. ..+..-..++.-+..-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~--dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLY--NDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHH--TCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHh--cCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 444432 356666666554 111 111 111123334456677777788877776532 2222222333333446677
Q ss_pred HHHHHHHHhcCC-CCChh-HHH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010642 184 LGMAFEVFKGMP-EKDVV-SWS---AMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLD 258 (505)
Q Consensus 184 ~~~A~~~~~~m~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 258 (505)
.+.+..+.+.+. ..+.. -|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 777777766654 23333 233 33456777888777767888887642 2222222222224444566666677776
Q ss_pred HHhhhcCCcCCcchHHHHHHHHHhcCCh-HHHHHHHHHCCCCCCHHH
Q 010642 259 RMSKDFGILPNIHHYGCVVDLLGRAGLL-DQAYQLITSMGVKPDSTI 304 (505)
Q Consensus 259 ~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 304 (505)
.+.+ ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 6654 2345555545555555555554 567777777733445443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.10 E-value=18 Score=33.05 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 010642 170 LCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESF----GAMQRAGVFPDDQTFTGVLSACS 245 (505)
Q Consensus 170 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 245 (505)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566668889999999987542 233456677776665554 44456788888888888887776
Q ss_pred ccCCHH-HHHHHHHHHhh---hcCC--cCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchh
Q 010642 246 HCGLVD-EGMMFLDRMSK---DFGI--LPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVT 319 (505)
Q Consensus 246 ~~g~~~-~a~~~~~~~~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 319 (505)
....-+ .=..+.+++.+ +.|- .-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 655311 11223333332 1132 2256677788899999999999998884 354444466655554444333221
Q ss_pred HHHHHHHHHHHhcCCCCchHH-HHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 320 LGERVIEHLIELKAQESGDYV-LLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
....|. -.+--|.-.++...|..+++...+
T Consensus 185 ---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222232 344556778899999988877654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.71 E-value=19 Score=32.91 Aligned_cols=168 Identities=12% Similarity=0.044 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHH----HHchhccCCCCCCHHHHHHHHHH
Q 010642 67 LMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLF----DNLNREESGCKPDDVTCLLVLQA 142 (505)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~pd~~t~~~ll~~ 142 (505)
.+.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+ .++++|..+...++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~--~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQ--AGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Confidence 455566678889999999987643 233456667766554443 44445 6788888777777777
Q ss_pred HHhccChH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 010642 143 CAHLGALE-FGEKIHRYIS----EHG--YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHG 215 (505)
Q Consensus 143 ~~~~~~~~-~a~~i~~~~~----~~~--~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 215 (505)
+.....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 66554311 1122333333 333 2336778888999999999999999988533333345665555444443332
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 216 RDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 216 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
.++ |.+.-..++ -|...+++..|..+++...+
T Consensus 184 ~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 222223333 34556788888877766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.33 E-value=10 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 010642 167 KMNLCNSLIAMYSKCGSLGMAFEVFKGMP 195 (505)
Q Consensus 167 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 195 (505)
+..+-.-+..+|.+.|++++|+.+++.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44555557777777777777777777775
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.91 E-value=26 Score=38.38 Aligned_cols=123 Identities=7% Similarity=-0.094 Sum_probs=71.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCC-----------------
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKP----------------- 300 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p----------------- 300 (505)
++..+...+..+.+.++..-.. .+...--.+..+|...|++++|.+.|.+. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4445555555555544332221 12222223445566666666666666665 1111
Q ss_pred ------CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 301 ------DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-----DYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 301 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
-..-|..++..+.+++.++.+.++.+.+++..+++.. .|..+...+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 1123556667777888888888887777766533322 4666777788888888887777766654443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=2.8 Score=39.66 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--------CCCCCHHH
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--------GVKPDSTI 304 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~ 304 (505)
++.++...|+.+++...+..+... .+-+...|..+|.+|.+.|+..+|++.|++. |+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 444455556666666555555542 1223445566666666666666666555544 66665543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.32 E-value=26 Score=31.67 Aligned_cols=170 Identities=10% Similarity=0.037 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHchhccCCCCCCHHHHHHHHH
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCL----FDNLNREESGCKPDDVTCLLVLQ 141 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~pd~~t~~~ll~ 141 (505)
..|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+...+ .++++|......++.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~--~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDL--AEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 3556677778888999999888643 23445666777665554 444455 678888887777777
Q ss_pred HHHhccC-----hHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhC--
Q 010642 142 ACAHLGA-----LEFGEKIHRYISEHGY--GSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMN-- 212 (505)
Q Consensus 142 ~~~~~~~-----~~~a~~i~~~~~~~~~--~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-- 212 (505)
.+..... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcC
Confidence 7655331 1222233333333332 236788889999999999999999887643333455555555444433
Q ss_pred -CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhh
Q 010642 213 -GHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKD 263 (505)
Q Consensus 213 -g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (505)
|...++- .+.-..++ -|...+++..|..+|+...+.
T Consensus 181 ~~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 181 DIEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4333321 11112233 344567888888888876653
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.19 E-value=11 Score=27.25 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=63.1
Q ss_pred cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 357888888888877763 34444444566788999999999999999999999987765 46788888888777777
Q ss_pred HCCCCCCHHHH
Q 010642 227 RAGVFPDDQTF 237 (505)
Q Consensus 227 ~~g~~p~~~t~ 237 (505)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 664 3344444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.85 E-value=7.9 Score=29.83 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34466666777777889999999999999999999999999999999875 3344556777764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.74 E-value=9.1 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=41.0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHH
Q 010642 295 SMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLN 344 (505)
Q Consensus 295 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 344 (505)
.+.+-|++.+..+.+.+|++.+|+..|.++++-++..-.+....|-.++.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34778999999999999999999999999999988776554556766543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.70 E-value=35 Score=32.71 Aligned_cols=317 Identities=9% Similarity=0.029 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCCChhHHHHHHH----HHHhC
Q 010642 9 SSPEEGFYLFEKMRQK-----RIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLR-DGYQLDSQLMTTLMD----LYSTF 78 (505)
Q Consensus 9 g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~ 78 (505)
|++++|++-+-.+.+. +..-.......++..|...++++...+.+..+.+ +|.. ......++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 5677777766555431 2233455677777888888888777665554433 2321 122223332 22222
Q ss_pred C--CHHHHHHHHhcCCC---C-------ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCC---HHHHHHHHHHH
Q 010642 79 E--KSFEACKLFDEIPQ---R-------DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPD---DVTCLLVLQAC 143 (505)
Q Consensus 79 g--~~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd---~~t~~~ll~~~ 143 (505)
. +.+.-..+.+.... . .......|...|-..|++.+|..++..+..+..+.-+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 22222333332221 1 11223456667777777777777777765421121111 12344455666
Q ss_pred HhccChHHHHHHHHHHHH----cCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH
Q 010642 144 AHLGALEFGEKIHRYISE----HGYGSK--MNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRD 217 (505)
Q Consensus 144 ~~~~~~~~a~~i~~~~~~----~~~~~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 217 (505)
...+++..|..+...+.. ...+|+ ...+...+..+...+++.+|.+.|.++ ...+...++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~-----------~~~~~~~~d~~~ 256 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI-----------YQTDAIKSDEAK 256 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHSCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------HhcccccCCHHH
Confidence 666777777666665532 111121 123344444555555555555443322 122222222222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc--CChHHHHHHHH
Q 010642 218 AIESFGAMQRAGVFPDDQTFTGVLSAC-SHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA--GLLDQAYQLIT 294 (505)
Q Consensus 218 A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 294 (505)
....+..+ ++... +..+. .-..++...... ..-++...|..++.+|... .+++.+.+.|.
T Consensus 257 ~~~~L~~~--------------v~~~iLa~~~~--~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 257 WKPVLSHI--------------VYFLVLSPYGN--LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHH--------------HHHHHHSSCSS--TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHHH--------------HHHHHhCCCCc--hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 22221111 11111 11111 112222233222 2234566777888887654 45666666665
Q ss_pred HC-CCC-------CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 295 SM-GVK-------PDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 295 ~~-~~~-------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
.. .-. .....|..|......++ +..+. .|-+...+..|...+.- ..++++....+|...|
T Consensus 320 ~~L~~~~~~~~~~~~~~~~~~L~~~v~ehn--------l~~i~--k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 320 PVLNEDDLAFGGEANKHHWEDLQKRVIEHN--------LRVIS--EYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp SSTTTCCSSCCCSCSSHHHHHHHHHHHHHH--------HHHHH--HHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred HHhcccchhhhcchhhHHHHHHHHHHHHHH--------HHHHH--HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 44 101 11233444444332221 11111 12233445555555422 5788999999998766
Q ss_pred C
Q 010642 367 L 367 (505)
Q Consensus 367 ~ 367 (505)
.
T Consensus 388 ~ 388 (445)
T 4b4t_P 388 I 388 (445)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.66 E-value=12 Score=27.17 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=58.6
Q ss_pred cChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQ 226 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (505)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 457888888888877663 344444445567789999999999999999999999877653 5677777777776766
Q ss_pred HCC
Q 010642 227 RAG 229 (505)
Q Consensus 227 ~~g 229 (505)
.+|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.57 E-value=35 Score=32.68 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhhc-CC--cCC--cc
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRA--GVFPD---DQTFTGVLSACSHCGLVDEGMMFLDRMSKDF-GI--LPN--IH 271 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~--~p~--~~ 271 (505)
...|...|...|++.+|.+++.++... |..+. ...+...+..|...+++.+|..+++++.... .. +|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887642 22221 1355666778888899999998888865321 11 122 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHHHHHHHHH----HHHhcCchhHHHHHHHHHHHhc-CCCCchHHHH
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM----GVKPDSTIWRTLLG----ACRIHKHVTLGERVIEHLIELK-AQESGDYVLL 342 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l 342 (505)
.+..++..+...+++.+|-+.|.+. ....|...+..++. ...-.+....-..++....... -+....|..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5677777888888888887777666 12223333322221 1111211122222222222222 1223467778
Q ss_pred HHHHHhC--CCHHHHHHHHH
Q 010642 343 LNLYSSV--GDWEKVKELRE 360 (505)
Q Consensus 343 ~~~~~~~--g~~~~a~~~~~ 360 (505)
+.+|... .+|+.+.+.|+
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHhchHhhhHHHHHHHH
Confidence 8888654 45666655553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.29 E-value=6.8 Score=31.55 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHC
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~ 296 (505)
-+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3555666666666666666666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.98 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.26 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.68 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.47 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.17 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.98 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.46 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-21 Score=186.93 Aligned_cols=338 Identities=9% Similarity=0.025 Sum_probs=187.0
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
.+.+.|++++|+..|+++.+..+ -+...+..+..++...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 35678999999999999988642 256788888999999999999999999999886 4577899999999999999999
Q ss_pred HHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCC--------------------------------
Q 010642 84 ACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG-------------------------------- 128 (505)
Q Consensus 84 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------------------------- 128 (505)
|...+....+ .+...+..........+....+......... ..
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccchhhhhHHHHHHhhc
Confidence 9999987653 2333333344444444444444433333322 11
Q ss_pred -CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHH
Q 010642 129 -CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSA 204 (505)
Q Consensus 129 -~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~ 204 (505)
.+-+...+..+...+...++++.|...+..+.+.. |.+..++..+...|...|++++|...|++.. ..+...+..
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 11123333444444444455555555554444432 2334444444555555555555555444332 223334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhc
Q 010642 205 MISGLAMNGHGRDAIESFGAMQRAGVFP-DDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRA 283 (505)
Q Consensus 205 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 283 (505)
+...+.+.|++++|+..|++..+. .| +..++..+...+...|++++|...++.... ..+.+...+..+...+.+.
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHC
Confidence 444455555555555555544442 22 223444444444555555555555544443 1222333444444445555
Q ss_pred CChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 284 GLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 284 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
|++++|.+.|++. .+.|+ ..+|..+...+...|++++|...++++++..|.++.+|..|+.+|.+.|
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 5555555555443 33332 3344444444555555555555555555555544444555555544444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-19 Score=171.37 Aligned_cols=322 Identities=10% Similarity=0.001 Sum_probs=262.2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCCh
Q 010642 36 AIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRT 112 (505)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 112 (505)
+...+.+.|++++|.+.++++++.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455667899999999999999875 45788899999999999999999999998754 3678999999999999999
Q ss_pred hHHHHHHHHchhccCCCCCCHHHHHHHHH----------------------------------HHHhccChHHHHHHHHH
Q 010642 113 RDALCLFDNLNREESGCKPDDVTCLLVLQ----------------------------------ACAHLGALEFGEKIHRY 158 (505)
Q Consensus 113 ~~A~~~~~~m~~~~~~~~pd~~t~~~ll~----------------------------------~~~~~~~~~~a~~i~~~ 158 (505)
++|+..+..... .. +.+......... .....+....+...+..
T Consensus 84 ~~A~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 84 QEAIEHYRHALR--LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHH--HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccc--cc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 999999999877 22 222222222111 12222334444445555
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010642 159 ISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQ 235 (505)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 235 (505)
..... +.+..++..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..|++....+. .+..
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHH
Confidence 54443 4566788889999999999999999998764 34667899999999999999999999999987543 3567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHH
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACR 313 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~ 313 (505)
.+..+...+.+.|++++|...|++..+. .+-+...+..+...+...|++++|.+.++.. ..+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 7888889999999999999999999863 2335678889999999999999999999987 33446778889999999
Q ss_pred hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 314 IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
..|++++|+..++++++..|.++.++..++.+|.+.|++++|...+++..+.
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-13 Score=128.20 Aligned_cols=240 Identities=12% Similarity=-0.043 Sum_probs=157.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK 180 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~ 180 (505)
.....+.+.|++++|+..|+++.+ .-|-+..+|..+..++...|++++|...+.++++.. |.+...+..+...|..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 345556666667777776666655 122234566666666666666666666666666653 3445556666666666
Q ss_pred cCCHHHHHHHHhcCCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 181 CGSLGMAFEVFKGMPEKDVV---SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 181 ~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
.|++++|.+.+++....++. .+....... ...+.......+..+...+...++...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 66666666665544311110 000000000 0000001111122233445667788888
Q ss_pred HHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.+..+.....++...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|.+.++++++..|.+
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 877764333445667788888999999999999999987 4445 47788899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 336 SGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
+.++..++.+|.+.|++++|.+.|++..+
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.4e-13 Score=127.66 Aligned_cols=265 Identities=12% Similarity=0.015 Sum_probs=191.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHh
Q 010642 70 TLMDLYSTFEKSFEACKLFDEIPQ---RDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAH 145 (505)
Q Consensus 70 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~ 145 (505)
.....+.+.|++++|+..|++..+ .+..+|..+..+|...|++++|+..|.+... +.| +...+..+...+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE----LKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc----cccccccccccccccccc
Confidence 355668899999999999998754 3678999999999999999999999999877 334 56778888899999
Q ss_pred ccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 010642 146 LGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAM 225 (505)
Q Consensus 146 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (505)
.|++++|.+.+..+.... +.............. ..+.......+..+...+...+|...|.+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc-cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999988764 211111111000000 001111111222334456677888888887
Q ss_pred HHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CH
Q 010642 226 QRAG-VFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DS 302 (505)
Q Consensus 226 ~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 302 (505)
.... -.++...+..+...+...|++++|...|++.... .+-+...|..+...|.+.|++++|.+.|++. ...| +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 6533 2345667788888899999999999999998864 2234667888999999999999999999987 4455 46
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCch-----------HHHHHHHHHhCCCHHHHHH
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGD-----------YVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~ 357 (505)
.+|..+..+|...|++++|+..|+++++..|.+... |..+-.++...|+.+.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 789999999999999999999999999988766442 3445556666666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=3.2e-09 Score=98.46 Aligned_cols=258 Identities=14% Similarity=-0.008 Sum_probs=167.3
Q ss_pred HHHHHHCCChhHHHHHHHHchhccCCCCCC------HHHHHHHHHHHHhccChHHHHHHHHHHHHcC--CC---CchhHH
Q 010642 103 ISCYIRNQRTRDALCLFDNLNREESGCKPD------DVTCLLVLQACAHLGALEFGEKIHRYISEHG--YG---SKMNLC 171 (505)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~~~~~~pd------~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~--~~---~~~~~~ 171 (505)
...+...|++++|++++++... ..|+ ...+..+..++...|++++|...+.++.+.. .. .....+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~----~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALE----ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh----hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 4456667777777777776655 1122 1345555666677777777777777665431 01 112345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC-------CCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHH
Q 010642 172 NSLIAMYSKCGSLGMAFEVFKGMP-------EKD----VVSWSAMISGLAMNGHGRDAIESFGAMQRAG----VFPDDQT 236 (505)
Q Consensus 172 ~~l~~~y~~~g~~~~A~~~~~~m~-------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t 236 (505)
..+...|...|++..|...+.... .+. ...+..+...+...|+++.+...+....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 556667777777777777665432 111 1245556677788888888888888776532 1222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-----cchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-----CHHHH
Q 010642 237 FTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-----IHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-----DSTIW 305 (505)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~ 305 (505)
+......+...++...+...+............ ...+..+...+...|++++|...+++. ...| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555666677788888888777766543221111 223455666778889999999998887 2221 24456
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHhc------CCCCchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 306 RTLLGACRIHKHVTLGERVIEHLIELK------AQESGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
..+..++...|++++|...++++.... |....++..+..+|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788889999999999999877542 33345778889999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=4.3e-09 Score=96.11 Aligned_cols=185 Identities=8% Similarity=-0.014 Sum_probs=133.2
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-hhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 148 ALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE--K-D-VVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 148 ~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
..+++..++++.++...+.+...+..++..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4577888888888765566677788888888888888888888887643 2 2 3468888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CC
Q 010642 224 AMQRAGVFPDDQTFTGVLS-ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GV 298 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 298 (505)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88775433 2233333222 234457888888888888874 3345667888888888888888888888876 33
Q ss_pred CCC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 010642 299 KPD--STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE 335 (505)
Q Consensus 299 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 335 (505)
.|+ ...|...+.--..+|+.+.+..+.+++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 442 4577777777778888888888888887776544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2e-08 Score=92.96 Aligned_cols=258 Identities=11% Similarity=-0.018 Sum_probs=154.1
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-C----ChhHHHHHHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTN----PFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQ-L----DSQLMTTLMDLY 75 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~ 75 (505)
+...|++++|+.+|++.++.....+ ...+..+..++...|++++|...++.+++.... + ....+..+...|
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4567888888888888776532211 124555666777788888888888877653211 1 123445556667
Q ss_pred HhCCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHCCChhHHHHHHHHchhccC--CCCCCHHHHHHHHHH
Q 010642 76 STFEKSFEACKLFDEIPQ-------R----DTVAWNVLISCYIRNQRTRDALCLFDNLNREES--GCKPDDVTCLLVLQA 142 (505)
Q Consensus 76 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~pd~~t~~~ll~~ 142 (505)
...|++..|...+..... + ....+..+...+...|+++.+...+........ +......++......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 777887777776654321 1 123455566777778888888777776654211 111223344555556
Q ss_pred HHhccChHHHHHHHHHHHHc----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHH
Q 010642 143 CAHLGALEFGEKIHRYISEH----GYGS--KMNLCNSLIAMYSKCGSLGMAFEVFKGMPEK-------DVVSWSAMISGL 209 (505)
Q Consensus 143 ~~~~~~~~~a~~i~~~~~~~----~~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~li~~~ 209 (505)
+...++...+...+...... +..+ ....+..+...+...|++++|...++...+. ....+..+...|
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 66677777777766655542 1111 1234555666777777777777777765421 122345566677
Q ss_pred HhCCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 010642 210 AMNGHGRDAIESFGAMQR----AGVFPDD-QTFTGVLSACSHCGLVDEGMMFLDRMSK 262 (505)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (505)
...|++++|...+++... .+..|+. .++..+...+...|++++|.+.+++..+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777776642 2333332 3455566667777777777777766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.8e-09 Score=96.66 Aligned_cols=208 Identities=12% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCChhHHHHHHHHHHh
Q 010642 136 CLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCG-SLGMAFEVFKGMP---EKDVVSWSAMISGLAM 211 (505)
Q Consensus 136 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 211 (505)
++.+...+.+.+..++|.++++.+++.+ |.+..+|+....++...| ++++|...++... ..+..+|+.+...+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3344444445555555555555555553 444555555555555544 3566666555443 2345566666666666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCC------
Q 010642 212 NGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGL------ 285 (505)
Q Consensus 212 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 285 (505)
.|++++|++.++++.+.... +...|..+...+.+.|++++|...++.+.+. -+.+...|+.+...+.+.+.
T Consensus 125 l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhh
Confidence 66666666666666653221 3556666666666666666666666666652 12234455555555554444
Q ss_pred hHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc--hHHHHHHHHHh
Q 010642 286 LDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG--DYVLLLNLYSS 348 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 348 (505)
+++|.+.+.+. ...| +...|..+...+.. ...+++...++...+..|.... .+..++..|..
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 45666666665 3444 46667666555544 3457777888888777765433 34455666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=6.7e-10 Score=102.94 Aligned_cols=232 Identities=8% Similarity=-0.085 Sum_probs=167.3
Q ss_pred HHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcC
Q 010642 106 YIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLG--ALEFGEKIHRYISEHGYGSKMNLC-NSLIAMYSKCG 182 (505)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~-~~l~~~y~~~g 182 (505)
+...|++++|+.+++.... .-+-+...+..+..++...+ +++++...+..+.+.. +.+...+ ......+...|
T Consensus 83 ~~~~~~~~~al~~~~~~l~---~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 158 (334)
T d1dcea1 83 EESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcc
Confidence 3445567788888888766 12334555666666665554 4788888888888875 4445554 44557778889
Q ss_pred CHHHHHHHHhcCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010642 183 SLGMAFEVFKGMPE---KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDR 259 (505)
Q Consensus 183 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 259 (505)
.+++|...++...+ .+..+|+.+...+.+.|++++|...++..... .|+. ..+...+...+..+++...+..
T Consensus 159 ~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHH
Confidence 99999999988774 35678888888999999888876666544431 1222 2233344556667778888887
Q ss_pred HhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 260 MSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 260 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
... ..+++...+..+...+...|+.++|.+.+.+. ...|+ ..+|..+...+...|++++|.+.++++.+.+|.+..
T Consensus 234 ~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~ 311 (334)
T d1dcea1 234 WLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311 (334)
T ss_dssp HHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred HHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence 765 34455666777788888899999999999887 55564 557788888999999999999999999999998877
Q ss_pred hHHHHHHHHHh
Q 010642 338 DYVLLLNLYSS 348 (505)
Q Consensus 338 ~~~~l~~~~~~ 348 (505)
.|..|...+.-
T Consensus 312 y~~~L~~~~~~ 322 (334)
T d1dcea1 312 YLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhH
Confidence 77777666653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=8.6e-09 Score=94.24 Aligned_cols=209 Identities=10% Similarity=0.060 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCH-HHHHHHHHHHHhcc-ChHHHHHHHHHHHHcCCCCchhHHHH
Q 010642 96 TVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDD-VTCLLVLQACAHLG-ALEFGEKIHRYISEHGYGSKMNLCNS 173 (505)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~ 173 (505)
..+++.+...+.+.+.+++|+++++++.. +.|+. ..|+....++...+ ++++|...++.+++.. |-+..+|+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHH
Confidence 34667777778888888888888888877 44543 45666666666665 4788888888887775 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-
Q 010642 174 LIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGL- 249 (505)
Q Consensus 174 l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~- 249 (505)
+...+.+.|++++|+..|+++. ..+...|..+...+.+.|++++|++.|+++.+..+. +...|+.+...+.+.+.
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 8888888888888888888775 346778888888888888888888888888875322 44556655544444333
Q ss_pred -----HHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC----CCCCCHHHHHHHHHHHH
Q 010642 250 -----VDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM----GVKPDSTIWRTLLGACR 313 (505)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~ 313 (505)
+++|...+....+. .+.+...|..+...+... ..+++.+.++.. +...+...+..+...+.
T Consensus 197 ~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 57788888777753 223455666665554443 356666665554 22234555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.4e-09 Score=96.50 Aligned_cols=201 Identities=9% Similarity=-0.047 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHH
Q 010642 134 VTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLA 210 (505)
Q Consensus 134 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 210 (505)
.++..+..++.+.|++++|.+.|++.++.. |.++.+++.+..+|.+.|++++|...|+++. ..+..+|..+...|.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 355566677777788888888887777764 5567777778888888888888888887765 234567777788888
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHH
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAY 290 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 290 (505)
..|++++|.+.|++..+... .+......+..++.+.+..+....+...... ..+....++ ++..+..........
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHH
Confidence 88888888888888776432 2333333333444455554444444444433 122222222 222222211111111
Q ss_pred HHH-HHC----CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHH
Q 010642 291 QLI-TSM----GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYV 340 (505)
Q Consensus 291 ~~~-~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (505)
... ... ...|+ ..+|..+...+...|++++|...+++.+...|.+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 111 111 11222 235666777888888888898888888888887754443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=3.1e-08 Score=90.25 Aligned_cols=182 Identities=8% Similarity=0.010 Sum_probs=143.5
Q ss_pred CCHHHHHHHHhcCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010642 182 GSLGMAFEVFKGMP----EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFL 257 (505)
Q Consensus 182 g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 257 (505)
+..++|..+|++.. ..+...|...+..+.+.|+.++|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888888643 34667889899999999999999999999987544333457888999999999999999999
Q ss_pred HHHhhhcCCcCCcchHHHHHHH-HHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 010642 258 DRMSKDFGILPNIHHYGCVVDL-LGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQ 334 (505)
Q Consensus 258 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 334 (505)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ...| +...|...+......|+++.|..+|++..+..|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999863 23344455444443 34468999999999988 2233 5778999999999999999999999999988765
Q ss_pred CCc----hHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 335 ESG----DYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 335 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
++. .|...+..-...|+.+.+..+++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 433 6777777778889999999999988653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.4e-09 Score=95.04 Aligned_cols=213 Identities=12% Similarity=-0.038 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHcCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 010642 150 EFGEKIHRYISEHGY-GS--KMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFG 223 (505)
Q Consensus 150 ~~a~~i~~~~~~~~~-~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 223 (505)
+.+..-++++..... .+ ...++..+..+|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 344444555554321 11 23577788999999999999999999875 4577899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCCH
Q 010642 224 AMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPDS 302 (505)
Q Consensus 224 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 302 (505)
+..+.... +..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++.
T Consensus 96 ~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 96 SVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 99985322 3567888889999999999999999999874 1223333334444455555555544444433 112222
Q ss_pred HHHHHHHHHHH----hcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010642 303 TIWRTLLGACR----IHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKG 366 (505)
Q Consensus 303 ~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 366 (505)
..+.. +..+. ..+..+.+...+.......|....+|..|...|...|++++|.+.|++..+..
T Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222 22221 22334444444444444455556688889999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=5e-10 Score=103.82 Aligned_cols=254 Identities=7% Similarity=-0.077 Sum_probs=181.7
Q ss_pred HHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHH-HHHH---HHH-------HHhccChHHHHHHHHHHHHcCCCCch
Q 010642 100 NVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVT-CLLV---LQA-------CAHLGALEFGEKIHRYISEHGYGSKM 168 (505)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t-~~~l---l~~-------~~~~~~~~~a~~i~~~~~~~~~~~~~ 168 (505)
..++....+.+..++|++++++... ..|+..+ |+.. +.. +...+.++++...++.+.+.. |.+.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~ 107 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSY 107 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcH
Confidence 3333333344445889999988876 4566543 3222 222 233455788999999988875 6677
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCChhHHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 169 NLCNSLIAMYSKCG--SLGMAFEVFKGMP---EKDVVSWSA-MISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 169 ~~~~~l~~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
..+..+..++...+ ++++|...++++. .++...|.. ....+...+.+++|+..+++....... +...|..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~ 186 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 78888877777766 4899999998874 345566654 446777889999999999998876433 5677888888
Q ss_pred HHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhH
Q 010642 243 ACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTL 320 (505)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~ 320 (505)
.+.+.|++++|...+...... .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHH
Confidence 888999888776655544432 111 122334456667777777777665 222344456667777788899999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|...+.+..+..|.+..++..++.+|.+.|++++|.+.+++..+.
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999988899999999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1e-06 Score=73.63 Aligned_cols=140 Identities=9% Similarity=-0.028 Sum_probs=97.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010642 175 IAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGM 254 (505)
Q Consensus 175 ~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 254 (505)
...+...|+++.|.+.|+++.+++..+|..+...|...|++++|++.|++..+.... +...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 556788899999999999998888889999999999999999999999999885422 4568888888999999999999
Q ss_pred HHHHHHhhhcCCcCCcc-hHHHHHHHHHhcCChHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Q 010642 255 MFLDRMSKDFGILPNIH-HYGCVVDLLGRAGLLDQAYQLITSMGVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELK 332 (505)
Q Consensus 255 ~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 332 (505)
..|++.... .+++.. .|.. .| ...+++ ..++..+..++...|++++|.+.++...+..
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~~-------~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYKI-------LG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECGG-------GT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchHHHHH-------hh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999888752 122211 0000 00 000111 2234445556666677777777777666666
Q ss_pred CCC
Q 010642 333 AQE 335 (505)
Q Consensus 333 ~~~ 335 (505)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.2e-06 Score=71.49 Aligned_cols=140 Identities=10% Similarity=-0.105 Sum_probs=75.3
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHH
Q 010642 72 MDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEF 151 (505)
Q Consensus 72 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 151 (505)
...+...|+++.|++.|+.+.+++..+|..+..+|...|++++|++.|++..+. -+-+...|..+..++.+.|++++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhccHHH
Confidence 334555666666666666666666666666666666666666666666666551 12234555556666666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010642 152 GEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGV 230 (505)
Q Consensus 152 a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 230 (505)
|.+.|++.++.. +.+... .|...|. ..+ ....++..+..+|.+.|++++|.+.|........
T Consensus 89 A~~~~~kAl~~~-~~n~~~------~~~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQL-RGNQLI------DYKILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTT-TTCSEE------ECGGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhC-ccCchH------HHHHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 666666555431 111000 0000000 000 0112345566677788888888888877776443
Q ss_pred C
Q 010642 231 F 231 (505)
Q Consensus 231 ~ 231 (505)
.
T Consensus 152 ~ 152 (192)
T d1hh8a_ 152 E 152 (192)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=4.8e-07 Score=76.21 Aligned_cols=114 Identities=8% Similarity=-0.154 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHH
Q 010642 232 PDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLL 309 (505)
Q Consensus 232 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 309 (505)
|+...+......+.+.|++++|+..|++.... .+.+...|..+..+|.+.|++++|...|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666666777777777777777777777653 2334556777777777777777777777776 55563 55677777
Q ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010642 310 GACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYS 347 (505)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (505)
.++...|++++|...++++.++.|.+...+...+..+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 77777777777777777777766654444444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=3.7e-06 Score=75.28 Aligned_cols=26 Identities=12% Similarity=-0.152 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 98 AWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
.|......|...+++++|.+.|.+..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~ 64 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAA 64 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555555555555555555555553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=6.1e-07 Score=75.53 Aligned_cols=96 Identities=7% Similarity=-0.064 Sum_probs=73.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHH
Q 010642 197 KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGC 275 (505)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 275 (505)
|+...+......|.+.|++++|+..|++...... -+...|..+..+|.+.|++++|+..|+...+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 4555566677788888888888888888877532 2556777888888888888888888888874 445 3567788
Q ss_pred HHHHHHhcCChHHHHHHHHHC
Q 010642 276 VVDLLGRAGLLDQAYQLITSM 296 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~ 296 (505)
+..+|.+.|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888776
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.6e-07 Score=67.08 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHH
Q 010642 277 VDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEK 354 (505)
Q Consensus 277 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 354 (505)
...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 44566677777777777776 3344 456777777777788888888888888888888777788888888888888888
Q ss_pred HHHHHHHHHhC
Q 010642 355 VKELREFMNEK 365 (505)
Q Consensus 355 a~~~~~~m~~~ 365 (505)
|...+++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88888777653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=1e-05 Score=72.35 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHCCChhHHHHHHHHch
Q 010642 66 QLMTTLMDLYSTFEKSFEACKLFDEIPQ-----RD----TVAWNVLISCYIRNQRTRDALCLFDNLN 123 (505)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 123 (505)
..|......|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|+..+++..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 3577777788888888888888766532 11 2345555566666666666665555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2.4e-06 Score=64.78 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=73.1
Q ss_pred HHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCch
Q 010642 241 LSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHV 318 (505)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 318 (505)
...+...|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566677777777777777653 2334556777777777777777777777776 3333 566777888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010642 319 TLGERVIEHLIELKAQESGDYVLLLNL 345 (505)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 345 (505)
++|+..+++..+..|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888877666655544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.35 E-value=9.3e-07 Score=66.56 Aligned_cols=90 Identities=11% Similarity=-0.042 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCC
Q 010642 273 YGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVG 350 (505)
Q Consensus 273 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 350 (505)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++..|.++.++..|+..|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 345667788999999999999988 4455 57789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 010642 351 DWEKVKELREFM 362 (505)
Q Consensus 351 ~~~~a~~~~~~m 362 (505)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.5e-06 Score=67.84 Aligned_cols=117 Identities=9% Similarity=-0.035 Sum_probs=85.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCc
Q 010642 240 VLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKH 317 (505)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 317 (505)
-...|.+.|++++|...|++..+. .+.+...|..+...|...|++++|.+.|++. .+.| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 344567788888888888888763 2335667777888888888888888888877 4445 45688888888999999
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHH--HhCCCHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLY--SSVGDWEKVKEL 358 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 358 (505)
+++|...++++.+..|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999888877766655443 334445555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.7e-06 Score=67.06 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=82.3
Q ss_pred HHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHH
Q 010642 276 VVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 276 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 353 (505)
....|.+.|++++|...|++. .+.| +...|..+...+...|++++|...++++++..|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 445688999999999999998 4455 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 010642 354 KVKELREFMNEKG 366 (505)
Q Consensus 354 ~a~~~~~~m~~~~ 366 (505)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.18 E-value=0.00027 Score=61.55 Aligned_cols=231 Identities=10% Similarity=-0.011 Sum_probs=119.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHh----ccChHHHHHHHHHHHHcCCCCchhH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAH----LGALEFGEKIHRYISEHGYGSKMNL 170 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~~~~~~~~~ 170 (505)
|+..+..|...+.+.+++++|++.|++..+ .| |...+..|...+.. ..+...+...+....+.+ ++..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~--~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccch
Confidence 345556666666666666666666666655 33 33344444444433 335555555555554443 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccC
Q 010642 171 CNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSA--CSHCG 248 (505)
Q Consensus 171 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~g 248 (505)
...|...+... ....++.+.|...++.....|..+....+ ..... .....
T Consensus 73 ~~~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~ 124 (265)
T d1ouva_ 73 CHLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCC
T ss_pred hhccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccc
Confidence 22222222210 00133445566666655554432111111 11111 12234
Q ss_pred CHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHh----cCChHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchhH
Q 010642 249 LVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGR----AGLLDQAYQLITSMGVKPDSTIWRTLLGACRI----HKHVTL 320 (505)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 320 (505)
....+...+...... .+...+..|...|.. ..+...+..+++...-..+......|...+.. ..+++.
T Consensus 125 ~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 455555555554442 234455555555554 34455566666555212345555555544443 457888
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHh----CCCHHHHHHHHHHHHhCCC
Q 010642 321 GERVIEHLIELKAQESGDYVLLLNLYSS----VGDWEKVKELREFMNEKGL 367 (505)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 367 (505)
|...|++..+.+ ++..+..|..+|.+ ..+.++|.+.|++..+.|-
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888887775 34577778888875 3478888888888877764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.1e-05 Score=63.90 Aligned_cols=133 Identities=6% Similarity=-0.070 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 010642 201 SWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLL 280 (505)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 280 (505)
.+......+.+.|++++|+..|.+....- |.. .+..+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 34445566777777888887777766421 100 000000001111111 12466678889
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKV 355 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 355 (505)
.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++.+++|.++.....+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5556 6778888999999999999999999999999999988888777776665554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.4e-05 Score=60.71 Aligned_cols=101 Identities=10% Similarity=-0.109 Sum_probs=68.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh---HHHHHHHHHC-CCCCCH---HHHHHHHHH
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL---DQAYQLITSM-GVKPDS---TIWRTLLGA 311 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~~ 311 (505)
.++..+...+++++|.+.|+..... -+.++.++..+..++.+.++. ++|..+++++ ...|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4566666777777777777777752 233456666677777665443 4577777776 334433 356777788
Q ss_pred HHhcCchhHHHHHHHHHHHhcCCCCchHHH
Q 010642 312 CRIHKHVTLGERVIEHLIELKAQESGDYVL 341 (505)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (505)
|...|++++|++.++++++.+|.+......
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 888888888888888888888887654433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0035 Score=55.95 Aligned_cols=279 Identities=11% Similarity=-0.011 Sum_probs=134.5
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 010642 28 TNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFEACKLFDEIPQRDTVAWNVLISCYI 107 (505)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 107 (505)
||..-...+..-|.+.|.++.|..++..+ .-|..++..|.+.++++.|.+.+.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 45555556667777777777777777543 124456666677777777777776543 4567777777777
Q ss_pred HCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010642 108 RNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSLGMA 187 (505)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 187 (505)
+.....-|. +.. .....++.....++..|...|.+++...+++...... +.+..+++-++..|++.+. ++-
T Consensus 81 ~~~e~~la~-----i~~--~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl 151 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCG--LHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKM 151 (336)
T ss_dssp HTTCHHHHH-----HTT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHH
T ss_pred hCcHHHHHH-----HHH--HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHH
Confidence 766554431 111 2333455556677777777777777777777665432 4456667777777777643 333
Q ss_pred HHHHhcCCC-C----------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 188 FEVFKGMPE-K----------DVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 188 ~~~~~~m~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
.+.+..... - ....|.-++-.|.+.|++++|..+.-. -.|+.......+..+.+..+++...++
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~ 226 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRA 226 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHH
Confidence 333332211 0 111244445555555555555443221 122222223334444555555544444
Q ss_pred HHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 010642 257 LDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQES 336 (505)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (505)
.....+. ++...+.|+......-+..+..+.+ .+.+++......++...+.+ +.
T Consensus 227 i~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~-------------------~k~~~l~li~p~Le~v~~~n--~~ 280 (336)
T d1b89a_ 227 IQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYF-------------------SKVKQLPLVKPYLRSVQNHN--NK 280 (336)
T ss_dssp HHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHH-------------------HHTTCTTTTHHHHHHHHTTC--CH
T ss_pred HHHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHH-------------------HhcCCcHHHHHHHHHHHHcC--hH
Confidence 4444332 1223333433333333333333333 33444444444454443322 23
Q ss_pred chHHHHHHHHHhCCCHHHHHH
Q 010642 337 GDYVLLLNLYSSVGDWEKVKE 357 (505)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~a~~ 357 (505)
....+|...|...++++.-++
T Consensus 281 ~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 281 SVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCcchhHHHHH
Confidence 456666677777766554333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=2.5e-05 Score=59.21 Aligned_cols=98 Identities=10% Similarity=-0.059 Sum_probs=74.1
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH---HHHHHHHhcCCCCC--h---hHHHHHHHH
Q 010642 137 LLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSKCGSL---GMAFEVFKGMPEKD--V---VSWSAMISG 208 (505)
Q Consensus 137 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~~g~~---~~A~~~~~~m~~~~--~---~~~~~li~~ 208 (505)
..+++.+...+++++|++.|+.+++.+ |.++.++..+..++.+.++. ++|+.+|+++.+.+ . .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777888889999999999988886 66788888888888776544 46888888876432 2 256677888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTF 237 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 237 (505)
|.+.|++++|++.|+++.+ +.|+....
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A 108 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQA 108 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHH
Confidence 8888888888888888887 45665433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.98 E-value=0.004 Score=53.71 Aligned_cols=157 Identities=14% Similarity=0.077 Sum_probs=98.1
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHhcCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHchhccCCCCCCHHHHHH
Q 010642 64 DSQLMTTLMDLYSTFEKSFEACKLFDEIPQ-RDTVAWNVLISCYIR----NQRTRDALCLFDNLNREESGCKPDDVTCLL 138 (505)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ 138 (505)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..+...|...+..... .+ +......
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~---~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LN---YSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TT---CHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--cc---ccchhhc
Confidence 456777788888899999999999998764 477888888888887 6788999999988876 34 2333334
Q ss_pred HHHHHH----hccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCChhHHHHHHHHH
Q 010642 139 VLQACA----HLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYSK----CGSLGMAFEVFKGMP-EKDVVSWSAMISGL 209 (505)
Q Consensus 139 ll~~~~----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~-~~~~~~~~~li~~~ 209 (505)
+...+. ...+.+.|...++...+.|.. .....+...+.. ......|...+.... ..+...+..+...|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhh
Confidence 433333 245778899999888887632 222333333332 234555555554433 23455555555555
Q ss_pred Hh----CCChHHHHHHHHHHHHC
Q 010642 210 AM----NGHGRDAIESFGAMQRA 228 (505)
Q Consensus 210 ~~----~g~~~~A~~~~~~m~~~ 228 (505)
.. ..+...+...++...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhccccc
Confidence 53 23344444455544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=3.1e-05 Score=57.81 Aligned_cols=88 Identities=7% Similarity=-0.045 Sum_probs=50.7
Q ss_pred HHHHHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010642 101 VLISCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSLIAMYS 179 (505)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~y~ 179 (505)
.+...+.+.|++++|+..|++... ..| +..+|..+..++.+.+++++|...++++++.. |.+..++..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 344555666666666666666655 223 34555555666666666666666666666554 445555566666666
Q ss_pred hcCCHHHHHHHHhc
Q 010642 180 KCGSLGMAFEVFKG 193 (505)
Q Consensus 180 ~~g~~~~A~~~~~~ 193 (505)
..|++++|.+.|++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666655543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=8.3e-05 Score=60.05 Aligned_cols=92 Identities=8% Similarity=0.008 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSV 349 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 349 (505)
.|+.+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|.++.....+.......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4566777888999999999999887 4444 5778888889999999999999999999999999988877777776665
Q ss_pred CCHH-HHHHHHHHHH
Q 010642 350 GDWE-KVKELREFMN 363 (505)
Q Consensus 350 g~~~-~a~~~~~~m~ 363 (505)
+... ...+++..|.
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 5443 3445555553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=7.5e-05 Score=60.43 Aligned_cols=111 Identities=7% Similarity=-0.027 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 315 (505)
.+......+.+.|++++|+..|.+........+.... .-......+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL----RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh----HHHHHHHHHHHHHhh
Confidence 3444555677778888888888777754222221111 000000000 124567788889999
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++++|+..++.+++.+|.++.+|..++.+|...|++++|...|++..+.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998774
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=7.1e-05 Score=60.52 Aligned_cols=130 Identities=8% Similarity=0.018 Sum_probs=88.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcC-CcchHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILP-NIHHYGCVVDLL 280 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~ 280 (505)
+......+...|++++|++.|.+..+. .............. .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 444556677778888888877776531 00000001111000 1112 344667788889
Q ss_pred HhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHH
Q 010642 281 GRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 281 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 353 (505)
.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...|++++++.|.+...+..|..++.+.....
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 6666 46788889999999999999999999999999998887777766665444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00027 Score=55.89 Aligned_cols=112 Identities=8% Similarity=-0.084 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010642 236 TFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPDSTIWRTLLGACRIH 315 (505)
Q Consensus 236 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 315 (505)
.+..-...+.+.|++++|...|.+........+.... ......... ....+|..+..++.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 3444555666777777777777776653211111000 000000000 1234667788888899
Q ss_pred CchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 316 KHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
|++++|+..++++++.+|.+..+|..++.+|...|++++|...|++..+.
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999899999999999999999999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=6.8e-05 Score=61.13 Aligned_cols=120 Identities=8% Similarity=-0.039 Sum_probs=85.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCCh-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 010642 239 GVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLL-DQAYQLITSMGVKPDSTIWRTLLGACRIHKH 317 (505)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 317 (505)
.........|++++|.+.|.+...-+.-.+-... ..+.+ .....-++.. ....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3445677889999999999988764221111000 00010 0111111111 24567788899999999
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCC
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN-----EKGLQTTP 371 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 371 (505)
+++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++. +.|+.|.+
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999874 36887744
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.82 E-value=0.00018 Score=56.98 Aligned_cols=126 Identities=6% Similarity=-0.155 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHH
Q 010642 200 VSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDL 279 (505)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 279 (505)
..+......+.+.|++.+|+..|.+....- |.. ..............+ ...+|+.+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 456677788999999999999999987631 110 000000000111111 22367778888
Q ss_pred HHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010642 280 LGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLY 346 (505)
Q Consensus 280 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (505)
|.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...|++..+++|.+..+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999887 4455 5779999999999999999999999999999999877766554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=7.5e-05 Score=57.16 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc-------hHHHHHH
Q 010642 274 GCVVDLLGRAGLLDQAYQLITSM-GVKP-DSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG-------DYVLLLN 344 (505)
Q Consensus 274 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~ 344 (505)
..+...+.+.|++++|.+.|++. .+.| +...|..+..++...|+++.|+..++++++..|.++. +|..+..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34667788889999999988887 4444 5778888999999999999999999999998876655 4556777
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 010642 345 LYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 345 ~~~~~g~~~~a~~~~~~m~~ 364 (505)
.+...+++++|.+.|++-..
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 78888899999999987654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=3.2e-06 Score=82.00 Aligned_cols=110 Identities=9% Similarity=-0.112 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Q 010642 235 QTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM-GVKPD-STIWRTLLGAC 312 (505)
Q Consensus 235 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 312 (505)
..+..+...+.+.|+.++|...+...... .| ...+..+.+.+...|++++|...|++. .+.|+ ...|+.|...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 44555555666666666666665554431 11 234556666677777777777777666 44453 45667777777
Q ss_pred HhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHh
Q 010642 313 RIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSS 348 (505)
Q Consensus 313 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 348 (505)
...|+..+|...|.+.+...|+.+.++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 777777777777777777776666666666666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.016 Score=51.51 Aligned_cols=200 Identities=7% Similarity=-0.045 Sum_probs=120.2
Q ss_pred cchhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Q 010642 4 AYSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (505)
-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.... . .+..+|..+...+.+......
T Consensus 23 ~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~---~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---H---TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---c---CCHHHHHHHHHHHHhCcHHHH
Confidence 35578999999999986543 78888888999999988776643 3 266788888888888887766
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
|.-+ ......+......++..|-..|.+++...++..... .-.++...++.++..+++.+. + ++.+.+...+
T Consensus 88 a~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~---~~~~~~~~~~~L~~lyak~~~-~---kl~e~l~~~s 159 (336)
T d1b89a_ 88 AQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKP-Q---KMREHLELFW 159 (336)
T ss_dssp HHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---STTCCHHHHHHHHHHHHTTCH-H---HHHHHHHHHS
T ss_pred HHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---CCccchHHHHHHHHHHHHhCh-H---HHHHHHHhcc
Confidence 5332 222223555567889999999999999999997744 234566778888888887643 2 3333333321
Q ss_pred CCCch----------hHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 164 YGSKM----------NLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 164 ~~~~~----------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
...+. ..|.-++-.|.+.|.+++|..+.-.-. ++..-....+..+.+..+++...+......+
T Consensus 160 ~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 160 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 11111 113445555555555555554432211 1222233445556666666655555444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.2e-05 Score=77.72 Aligned_cols=216 Identities=8% Similarity=-0.103 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhCCCHHHHHHHHhc
Q 010642 13 EGFYLFEKMRQKRIPTNP-FACSFAIKCCMKFCSLMGGLQIHARVLRDGYQLDS-QLMTTLMDLYSTFEKSFEACKLFDE 90 (505)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 90 (505)
+|...|++..+. +||. ..+..+..++...++++++ +++++..+ |+. ...+....+. +. .+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~~-~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-NH-AFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-HH-HTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-HH-HHHHHHHHHHH
Confidence 677788877763 4443 3455555666666666554 56665543 211 1111111111 00 12233444433
Q ss_pred CCC----CChhHHHHHH--HHHHHCCChhHHHHHHHHchhccCCCCC-CHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Q 010642 91 IPQ----RDTVAWNVLI--SCYIRNQRTRDALCLFDNLNREESGCKP-DDVTCLLVLQACAHLGALEFGEKIHRYISEHG 163 (505)
Q Consensus 91 ~~~----~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~p-d~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 163 (505)
..+ ++..-..... ..+...+.++.|+..+....+ +.| +...+..+...+.+.++.+.|...+....+..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~----l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN----VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 221 2221111111 122234455556555554432 333 34455556666667777777776666555432
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010642 164 YGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMP---EKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGV 240 (505)
Q Consensus 164 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 240 (505)
...++..+.+.+...|++++|...|++.. ..+..+|+.+...|...|+..+|+..|.+..... .|-..++..|
T Consensus 151 ---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 ---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 12455667777777777777777777654 2344677777777777777777777777776642 3455566666
Q ss_pred HHHHh
Q 010642 241 LSACS 245 (505)
Q Consensus 241 l~~~~ 245 (505)
...+.
T Consensus 227 ~~~~~ 231 (497)
T d1ya0a1 227 QKALS 231 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00027 Score=53.92 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 010642 202 WSAMISGLAMNGHGRDAIESFGAMQR 227 (505)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (505)
|..+...+...+++++|++.|++...
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34445555556666666666666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=0.00045 Score=55.53 Aligned_cols=87 Identities=8% Similarity=-0.071 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCCCchhHHHHH
Q 010642 95 DTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEKIHRYISEHGYGSKMNLCNSL 174 (505)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 174 (505)
+...|+.+..+|.+.|++++|+..+++..+ . -+.+..+|..+..++...|++++|.+.|+.+++.. |.+..+...+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l 151 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--I-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhh--h-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345677777788888888888888888766 1 23356677778888888888888888888888774 4466666666
Q ss_pred HHHHHhcCCHH
Q 010642 175 IAMYSKCGSLG 185 (505)
Q Consensus 175 ~~~y~~~g~~~ 185 (505)
..++.+.....
T Consensus 152 ~~~~~~l~~~~ 162 (169)
T d1ihga1 152 LKVKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65554444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.49 E-value=0.00054 Score=55.01 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 303 TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 303 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.+|..+..++.+.|++++|+..++.+++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356667788899999999999999999999999999999999999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=0.0002 Score=55.97 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=45.3
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcC-----------chhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHH
Q 010642 287 DQAYQLITSM-GVKP-DSTIWRTLLGACRIHK-----------HVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWE 353 (505)
Q Consensus 287 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 353 (505)
++|...|++. .+.| +..+|..+..++...| +++.|.+.|+++++.+|.+...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 4455555444 3333 3445555555554433 46889999999999999886555444443 4
Q ss_pred HHHHHHHHHHhCCC
Q 010642 354 KVKELREFMNEKGL 367 (505)
Q Consensus 354 ~a~~~~~~m~~~~~ 367 (505)
.|.+++.+..++|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 56677777766664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.00086 Score=52.97 Aligned_cols=63 Identities=6% Similarity=-0.117 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCC----C-------CchHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQ----E-------SGDYVLLLNLYSSVGDWEKVKELREFMNE 364 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 364 (505)
...|+.+..++...|++++|...+++.++..|. . ...+..+..+|...|++++|...|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888889999998888888765421 1 12577889999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.0017 Score=52.50 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=27.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 010642 238 TGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITS 295 (505)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 295 (505)
..+..++...|++++|...++.+.+. .+-+...|..++.+|.+.|+.++|++.|++
T Consensus 71 ~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 71 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34444455555555555555555432 122334455555555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00032 Score=54.79 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=66.5
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------CCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKF----------CSLMGGLQIHARVLRDGYQLDSQLMTTLMDL 74 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 74 (505)
|-+.+.+++|+..|+..++.. +.+...+..+..++... +.+++|...++++++.+ +.+...|..+...
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 445556667777777766653 22445555555555432 22344555555555544 2344444444444
Q ss_pred HHhCCCHHHHHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCCCCCCHHHHHHHHHHHHhccChHHHHH
Q 010642 75 YSTFEKSFEACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESGCKPDDVTCLLVLQACAHLGALEFGEK 154 (505)
Q Consensus 75 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~ 154 (505)
|...|++. ++.. ...+.+++|.+.|++... +.|+..++...+..+ ..+.+
T Consensus 85 y~~~g~~~-----------~~~~---------~~~~~~~~A~~~~~kal~----l~P~~~~~~~~L~~~------~ka~~ 134 (145)
T d1zu2a1 85 YTSFAFLT-----------PDET---------EAKHNFDLATQFFQQAVD----EQPDNTHYLKSLEMT------AKAPQ 134 (145)
T ss_dssp HHHHHHHC-----------CCHH---------HHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHH------HTHHH
T ss_pred HHHcccch-----------hhHH---------HHHHhHHHhhhhhhcccc----cCCCHHHHHHHHHHH------HHHHH
Confidence 43332110 0000 001235778888888866 667777666555444 45566
Q ss_pred HHHHHHHcC
Q 010642 155 IHRYISEHG 163 (505)
Q Consensus 155 i~~~~~~~~ 163 (505)
++.++.+.|
T Consensus 135 ~~~e~~k~~ 143 (145)
T d1zu2a1 135 LHAEAYKQG 143 (145)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHHh
Confidence 676666655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.18 E-value=0.00052 Score=59.52 Aligned_cols=123 Identities=12% Similarity=-0.000 Sum_probs=63.9
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCC-cchHHHHHHHHHhcCChHHH
Q 010642 211 MNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPN-IHHYGCVVDLLGRAGLLDQA 289 (505)
Q Consensus 211 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 289 (505)
+.|++++|+..+++..+.... |...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 456777777777776664221 4456666667777777777777777776642 233 23333333333333333332
Q ss_pred HHHHHHC--CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 290 YQLITSM--GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 290 ~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 2221111 11121 222333334455667777777777776666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.001 Score=47.37 Aligned_cols=69 Identities=10% Similarity=-0.056 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 275 CVVDLLGRAGLLDQAYQLITSM--------GVKPD-STIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 275 ~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
.+...+.+.|++++|...|++. ...++ ..++..|..++.+.|++++|+..++++++.+|.++.++..+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4555566666666666666555 11223 457888888999999999999999999999998887776653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.0031 Score=49.54 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHC--------CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 272 HYGCVVDLLGRAGLLDQAYQLITSM--------GVKPD-----STIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 272 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
.|+.+..+|...|++++|.+.+++. ...++ ...+..+..++...|++++|...|++..++.|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555566666666655555443 12222 22466677889999999999999999888754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.98 E-value=0.00055 Score=59.36 Aligned_cols=52 Identities=6% Similarity=-0.116 Sum_probs=27.6
Q ss_pred hcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 010642 7 MSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRD 59 (505)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 59 (505)
+.|++++|+..|++.++..+ -|...+..+...++..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44555555555555555432 24445555555555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.14 Score=47.42 Aligned_cols=324 Identities=11% Similarity=-0.013 Sum_probs=161.4
Q ss_pred chhcCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHH
Q 010642 5 YSMSSSPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDGYQL-DSQLMTTLMDLYSTFEKSFE 83 (505)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 83 (505)
..+.|+..++..+...+... | ...|...-..-...++... .++...+.+..-.| .......-+..+++.+++..
T Consensus 16 a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~-~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~ 90 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPA-VTVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCH-HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCH-HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHH
Confidence 34567777777766666432 2 2333333222222222221 12333333321111 12223444566788889888
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHCCChhHHHHHHHHchhccCC-CCCCHHHHHHHHHHHHhccChHHHHHHHHHHHHc
Q 010642 84 ACKLFDEIPQRDTVAWNVLISCYIRNQRTRDALCLFDNLNREESG-CKPDDVTCLLVLQACAHLGALEFGEKIHRYISEH 162 (505)
Q Consensus 84 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~pd~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 162 (505)
....+..-+ .+...-.....+....|+.++|...+..+-. .| ..|+. + ..++..+.+.
T Consensus 91 ~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~--~~~~~p~~--c----------------~~l~~~~~~~ 149 (450)
T d1qsaa1 91 LLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWL--TGKSQPNA--C----------------DKLFSVWRAS 149 (450)
T ss_dssp HHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--CSSCCCTH--H----------------HHHHHHHHHT
T ss_pred HHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCchH--H----------------HHHHHHHHhc
Confidence 777665433 3555556777888889999999888877755 33 23322 2 2233444444
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010642 163 GYGSKMNLCNSLIAMYSKCGSLGMAFEVFKGMPEKDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLS 242 (505)
Q Consensus 163 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 242 (505)
| ..+...+-.-+......|+...|..+...+...........+....+.. .+..... . ..++......+..
T Consensus 150 ~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~---~~~~~~~---~--~~~~~~~~~~~~~ 220 (450)
T d1qsaa1 150 G-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPN---TVLTFAR---T--TGATDFTRQMAAV 220 (450)
T ss_dssp T-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGG---GHHHHHH---H--SCCCHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChH---hHHHHHh---c--CCCChhhhHHHHH
Confidence 3 2333344445555666778888888887776554444455554443222 2222111 1 1223322222223
Q ss_pred HHhc--cCCHHHHHHHHHHHhhhcCCcCCcch--HHHHHHHHHhcCChHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCc
Q 010642 243 ACSH--CGLVDEGMMFLDRMSKDFGILPNIHH--YGCVVDLLGRAGLLDQAYQLITSM-GVKPDSTIWRTLLGACRIHKH 317 (505)
Q Consensus 243 ~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~ 317 (505)
+..+ ..+.+.+..++..........++... ...+...+...+..+.+..++... ....+.....-.+......++
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~ 300 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGD 300 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCC
Confidence 3222 24566677766666554232222111 011112222345556666666555 222233333334444455667
Q ss_pred hhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 318 VTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...+...++.+.......+....-+..++...|+.+.|...|....
T Consensus 301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 7766666665533222223345567777777777777777777653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.46 E-value=0.033 Score=40.46 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=101.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHH
Q 010642 209 LAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQ 288 (505)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 288 (505)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34567777888887777653 2556677777766677777777777777755433332 344444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010642 289 AYQLITSMGVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMNEKGLQ 368 (505)
Q Consensus 289 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 368 (505)
...-+-.++ .+....+..+......|+-+.-.++.+.+.+.+.+++.....+.++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444443 234455667788888999999999999988888888889999999999999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0078 Score=42.51 Aligned_cols=64 Identities=14% Similarity=-0.049 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC-------CchHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 302 STIWRTLLGACRIHKHVTLGERVIEHLIELKAQE-------SGDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 302 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
...+-.+...+.+.|+++.|+..++++.+..|.+ ..++..|..+|.+.|++++|...+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444567788899999999999999998876433 246889999999999999999999998764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.18 E-value=0.26 Score=36.62 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 010642 10 SPEEGFYLFEKMRQKRIPTNPFACSFAIKCCMKFCSLMGGLQIHARVLRDG 60 (505)
Q Consensus 10 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 60 (505)
++++|+..|++..+.|. ......+. .....+.++|.+.+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 55677777777766652 22222222 122345555666665555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.68 E-value=0.46 Score=35.12 Aligned_cols=17 Identities=6% Similarity=-0.365 Sum_probs=9.3
Q ss_pred cChHHHHHHHHHHHHcC
Q 010642 147 GALEFGEKIHRYISEHG 163 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~ 163 (505)
.+.++|.+.+.+..+.|
T Consensus 37 ~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN 53 (133)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHhhhhccc
Confidence 35555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.48 E-value=0.9 Score=32.78 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=92.0
Q ss_pred HHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010642 178 YSKCGSLGMAFEVFKGMPE-KDVVSWSAMISGLAMNGHGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMF 256 (505)
Q Consensus 178 y~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 256 (505)
+.-.|.+++..++..+... .+..-||-+|.-....-+-+...+.++.+-. -.| ....+++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHH
Confidence 4456888888888877653 4556677777666666666666666555432 111 1233444444433
Q ss_pred HHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 010642 257 LDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSM--GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKA 333 (505)
Q Consensus 257 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 333 (505)
+-.+- .+......-++.+..+|+-+.-.++++.+ .-+|++...-.+..+|.+.|+..++-.++.++.+.+.
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33332 24556667778888899998888888874 5567788888888999999999999999888877663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.47 E-value=0.26 Score=35.85 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHhcCCCC-chHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010642 316 KHVTLGERVIEHLIELKAQES-GDYVLLLNLYSSVGDWEKVKELREFMNEK 365 (505)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 365 (505)
.+.++|+.+++.+.+.+|.+. ..+..|..+|.+.|++++|.+.++.+.+.
T Consensus 52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455667777777666655443 45566677777777777777777766553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=6.4 Score=35.59 Aligned_cols=204 Identities=8% Similarity=-0.059 Sum_probs=107.8
Q ss_pred cChHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHH
Q 010642 147 GALEFGEKIHRYISEHGYGSKMNL---CNSLIAMYSKCGSLGMAFEVFKGMP--EKDVVSWSAMISGLAMNGHGRDAIES 221 (505)
Q Consensus 147 ~~~~~a~~i~~~~~~~~~~~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~ 221 (505)
.+.+.+..++.............. ...+.......+..+.|...+.... ..+.....-.+......+++..+...
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW 307 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHH
Confidence 466677777766655432221111 1122222233455566665554432 22333222334444556778888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHHHHHhcCChHHHHHHHHHCCCCCC
Q 010642 222 FGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVDLLGRAGLLDQAYQLITSMGVKPD 301 (505)
Q Consensus 222 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 301 (505)
+..|... ..-...-.--+..+....|+.+.|..+|...... ++ .|.-|.. .+.|..-.. . .......+.
T Consensus 308 ~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~----~~--fYG~LAa--~~Lg~~~~~-~-~~~~~~~~~ 376 (450)
T d1qsaa1 308 LARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RG--FYPMVAA--QRIGEEYEL-K-IDKAPQNVD 376 (450)
T ss_dssp HHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CS--HHHHHHH--HHTTCCCCC-C-CCCCCSCCC
T ss_pred HHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC----CC--hHHHHHH--HHcCCCCCC-C-cCCCCccHH
Confidence 7776432 1112333345667777888888888888877531 22 2332221 112211000 0 000011111
Q ss_pred -HHHH---HHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010642 302 -STIW---RTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLLNLYSSVGDWEKVKELREFMN 363 (505)
Q Consensus 302 -~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 363 (505)
...- -.-+..+...|....|...+..+.... ++.....+.....+.|.++.|+....+..
T Consensus 377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1110 122355678899999999998886543 45577788888999999999998776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.98 E-value=1.7 Score=29.64 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHHHHHHC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCchHHHHH
Q 010642 288 QAYQLITSM---GVKPDSTIWRTLLGACRIHKHVTLGERVIEHLIELKAQESGDYVLLL 343 (505)
Q Consensus 288 ~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 343 (505)
++.+-++.+ .+-|++.+..+-+.+|++.+++..|.++++.++..-.++...|-.++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 444444444 67799999999999999999999999999998876644455666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.79 E-value=1.9 Score=29.31 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhhcCCcCCcchHHHHHH
Q 010642 214 HGRDAIESFGAMQRAGVFPDDQTFTGVLSACSHCGLVDEGMMFLDRMSKDFGILPNIHHYGCVVD 278 (505)
Q Consensus 214 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 278 (505)
+.-++.+-++.+....+.|+.....+.+.||-+.+++..|.++|+.+..+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 455667777777777889999999999999999999999999999988643 334556766654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.46 E-value=2.1 Score=30.79 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=32.7
Q ss_pred hHHHHHHHHHC-CCCC-CH-HHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCCc
Q 010642 286 LDQAYQLITSM-GVKP-DS-TIWRTLLGACRIHKHVTLGERVIEHLIELKAQESG 337 (505)
Q Consensus 286 ~~~A~~~~~~~-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (505)
.+++..+|++. ...| +. ..+..|..+|.+.|+++.|.+.++.+++.+|.+..
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 34555555555 1123 22 35556666777788888888888888888877643
|