Citrus Sinensis ID: 010683

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
cEEEEEEEccEEEEEEEEEEEcEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEEEccccccccccccccccccEEccEEEcccccccEEEEccccccEEEEEcccccccccccEEEEEEccccccccccccccEEccEEEcccccccccEEEEEccccccEEEEEEccccccccccEEEEEEccccccccccccccEEccEEccccccccEEEEEEcccccEEEEEccccEEEEccccccccccccccccccccccccEEEEEccccccccccccEEEEccccEEEEEEcccccEEEEEccccccccccccccccccEEEEccccccccEEEEEEEcccccEEEEEcccccccccccccccccccEEEHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccEEEEEEEEEEEEEcEEEEccEEEEEEEcccEEEEEccccccccccccccccccccEEcccccHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccccccccccEEEEEccccccccccccccccccccHHHHHHHccccEEEEEEEcccEEEEEEcccccccccccEEEEEccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccEEEEccccccccccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccEEEEccccccEEEEEEEEcccccEEEEEccccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccccccHccHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccc
MKLQHYYYHYYLCFTcffmpficytslnccmdgqlgfsgsnslvpcvieqfltigapdsleddsktnhkapikicSVKAGGMMSLAIDNAGAlwmwgncplpdssteggfslvssftpspvwdfhghTVVKVACGSEHVVALVSagetykgedlvcyswgannngqlglgdresrlrpKIIEtfnqdspwavYEVTCGSFHTALlthrkrpndmLESMCwtfglgengqlghgttqsalvpeqvkelpQYVYLVSVDCGLFHTSVVSsagdvwswgmekglglcpnasltrneagdaispilisgngphgpkfqdpvqvACGAAHTVlvtddgyklwswgrgrsgvlgtgktidffapaivlwpplteefkqdelntgglddeiktkdlegAEERDEKLSSAMEEMKLLQSKLSVMERYASIlhgsifgkpfaaeqdipislkdmgffdITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNEClhsstigk
MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDsleddsktnhkAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIEtfnqdspwaVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDelntgglddeiktkdlegaEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLesadrsklvrlERFYRNMLAGVKDKLMKRRIQEivneclhsstigk
MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
***QHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGA*************APIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEF******************************************LSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECL*******
*K*****YHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQF***************NHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGA***********EEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSS****
MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLE**********SAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
*KLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLH******
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKDxxxxxxxxxxxxxxxxxxxxxxxxLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGFFDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.496 0.568 0.298 1e-22
Q9UII4 1024 E3 ISG15--protein ligase yes no 0.361 0.177 0.356 1e-20
O95714 4834 E3 ubiquitin-protein liga no no 0.509 0.053 0.272 1e-19
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.509 0.053 0.272 1e-19
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.503 0.051 0.274 3e-19
Q15751 4861 Probable E3 ubiquitin-pro no no 0.734 0.076 0.267 3e-18
Q6P798 551 RCC1 and BTB domain-conta no no 0.434 0.397 0.296 3e-17
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.426 0.210 0.292 3e-17
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.458 0.218 0.300 3e-17
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.458 0.218 0.297 4e-17
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 45/295 (15%)

Query: 72  IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
           I+I  +  G    LA+   G +  WG   N  L    TE       S  P  +  F G  
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 173

Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
           +  VA G+EH  A+         ED   Y WG    G LGLGDR  RL P+ + +   + 
Sbjct: 174 IKMVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 225

Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
              +  V CG  HT  +++            +T+G  + GQLGHG  +  L+P +++ L 
Sbjct: 226 ---MSMVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 274

Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
              ++  +  G  HT  ++S G ++ WG  K   +G+  N         D  SP+ +   
Sbjct: 275 NS-FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 322

Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
               P  Q  VQV+CG  HT+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 323 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
359476350564 PREDICTED: E3 ubiquitin-protein ligase H 0.918 0.820 0.705 0.0
255550918565 Protein pim1, putative [Ricinus communis 0.904 0.807 0.719 0.0
296081841441 unnamed protein product [Vitis vinifera] 0.875 1.0 0.700 0.0
449461323571 PREDICTED: E3 ubiquitin-protein ligase H 0.928 0.819 0.670 0.0
449507254581 PREDICTED: E3 ubiquitin-protein ligase H 0.928 0.805 0.660 0.0
224141731561 predicted protein [Populus trichocarpa] 0.926 0.832 0.684 0.0
357466661563 RCC1 and BTB domain-containing protein [ 0.912 0.817 0.649 1e-178
356554552576 PREDICTED: E3 ubiquitin-protein ligase H 0.904 0.791 0.658 1e-176
356507929559 PREDICTED: E3 ubiquitin-protein ligase H 0.865 0.779 0.655 1e-174
99646741573 regulator of chromosome condensation fam 0.922 0.811 0.632 1e-171
>gi|359476350|ref|XP_002283782.2| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/476 (70%), Positives = 386/476 (81%), Gaps = 13/476 (2%)

Query: 28  NCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAI 87
           N C+      S  N LVP ++E FL +G+  SL D+S T +K P+K+ +VKAGGMMSLAI
Sbjct: 101 NSCI-----LSDDNCLVPHLLELFLGLGSLGSLTDESDTKNKTPLKVNAVKAGGMMSLAI 155

Query: 88  DNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 147
           DN G LWMWGN P   S  +G FSLVSSFTP PVWDFHGHTVVKVACG+EHVVALVS GE
Sbjct: 156 DNLGGLWMWGNVP-ESSPDKGEFSLVSSFTPIPVWDFHGHTVVKVACGNEHVVALVSHGE 214

Query: 148 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 207
           TYKG DL+CYSWG N +GQLGLGD E+RLRP++++TFN +S W VYEV CG+FHTALLTH
Sbjct: 215 TYKGGDLICYSWGNNGHGQLGLGDTENRLRPEVVKTFNLESLWEVYEVACGAFHTALLTH 274

Query: 208 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 267
           +KRP+D LESMCWTFGLG+NGQLGHGTT+   +PE VK+LP++ +LVSVDCGLFHTSVVS
Sbjct: 275 KKRPSDTLESMCWTFGLGDNGQLGHGTTKGISLPEPVKDLPEHRFLVSVDCGLFHTSVVS 334

Query: 268 SAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTV 327
           SAG+VWSWGMEKGLGLCP+AS T  + GDA SP+L      +G KF+DPVQVACGAAHTV
Sbjct: 335 SAGEVWSWGMEKGLGLCPDASFTGTDPGDAPSPLL------YGSKFRDPVQVACGAAHTV 388

Query: 328 LVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTK 387
           LV DDGYKLWSWGRGRSGVLG GKT+D FAP+ VLWPPLTE+FK+ E  T   + +I+ K
Sbjct: 389 LVADDGYKLWSWGRGRSGVLGNGKTVDCFAPSTVLWPPLTEDFKELESGTTSGEKKIENK 448

Query: 388 DLEGAEERDEKLSSAMEEMKLLQSKLSVMERYASILHGSIFGKPFAAEQDIPISLKDMGF 447
           D E   E +++LS A EEMKLL SKLS MERYASILHGSIFGKPF  EQDIPISL++ GF
Sbjct: 449 DPEEVTEMEKRLSLATEEMKLLHSKLSTMERYASILHGSIFGKPF-EEQDIPISLQNSGF 507

Query: 448 FDITKEWENMLESADRSKLVRLERFYRNMLAGVKDKLMKRRIQEIVNECLHSSTIG 503
           FDI KEWENMLESADR KLV LE+FYRNMLAGVKDKLMKRRIQEI+ ECL     G
Sbjct: 508 FDIAKEWENMLESADRGKLVMLEKFYRNMLAGVKDKLMKRRIQEIIKECLPPPATG 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550918|ref|XP_002516507.1| Protein pim1, putative [Ricinus communis] gi|223544327|gb|EEF45848.1| Protein pim1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296081841|emb|CBI20846.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461323|ref|XP_004148391.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449507254|ref|XP_004162977.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141731|ref|XP_002324218.1| predicted protein [Populus trichocarpa] gi|222865652|gb|EEF02783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466661|ref|XP_003603615.1| RCC1 and BTB domain-containing protein [Medicago truncatula] gi|355492663|gb|AES73866.1| RCC1 and BTB domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356554552|ref|XP_003545609.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|356507929|ref|XP_003522715.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|99646741|emb|CAK22423.1| regulator of chromosome condensation family protein [Beta vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
TAIR|locus:2144291553 AT5G11580 "AT5G11580" [Arabido 0.690 0.629 0.568 8.1e-140
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.365 0.418 0.331 4.1e-15
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.361 0.037 0.299 1.2e-10
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.361 0.050 0.294 8.1e-11
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.361 0.049 0.294 8.2e-11
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.361 0.038 0.299 1.1e-10
UNIPROTKB|E1B782 4847 HERC2 "Uncharacterized protein 0.361 0.037 0.299 1.1e-10
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.361 0.037 0.294 1.5e-10
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.361 0.038 0.294 1.5e-10
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.361 0.037 0.294 1.5e-10
TAIR|locus:2144291 AT5G11580 "AT5G11580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1041 (371.5 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
 Identities = 204/359 (56%), Positives = 247/359 (68%)

Query:    33 GQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGA 92
             GQLGF G NSL PC+I+         S  +DS     + +K+C+VKAG MMSLAIDN G 
Sbjct:   103 GQLGFDGENSLAPCLIKNLFERETSSSSLNDSGREVGSDLKVCTVKAGSMMSLAIDNVGG 162

Query:    93 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGE 152
             LWMWGN P  DS  +   S  S   P P+ DFHG TV+KVACG EHVVALV  G+ +K  
Sbjct:   163 LWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKVACGDEHVVALVGPGDIHKDN 222

Query:   153 --DL-VCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRK 209
               D+ V YSWG N++GQLGLGD ESR RP+ +ETFNQ S   VY++ CG+ HTALLT+RK
Sbjct:   223 SYDVSVLYSWGNNHHGQLGLGDGESRARPQTVETFNQKSGLTVYDIACGAHHTALLTYRK 282

Query:   210 R-PNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSS 268
               P     S+CWTFG GENGQLGH + +S+ +PE V +LP++ YLVSVDCGLFHTSVVSS
Sbjct:   283 ETPKG--PSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPEHAYLVSVDCGLFHTSVVSS 340

Query:   269 AGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVL 328
              G VWSWGME+GLGLCP+ + T  EAGD   P  ISG      +F+DPVQV+CGAAHTVL
Sbjct:   341 EGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSS---RFRDPVQVSCGAAHTVL 397

Query:   329 VTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPPLTEEFKQDELNTG--GLDDEIK 385
             V D GYKLWSWGRGR+GVLGTG   D + P +V WP   +  K++  + G     +EIK
Sbjct:   398 VVDGGYKLWSWGRGRNGVLGTGNVSDCYVPTLVFWPNELKPEKEEVPDDGKSASTEEIK 456
GO:0003682 "chromatin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-20
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-15
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  108 bits (270), Expect = 3e-25
 Identities = 74/340 (21%), Positives = 129/340 (37%), Gaps = 56/340 (16%)

Query: 72  IKICSVKAGGMMSLAIDNAGALWMWG-------------NCPLPDSSTEGGFSLVSSFTP 118
             I  +  GG  SL +D+ G L+ WG             +    ++            TP
Sbjct: 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTP 163

Query: 119 SPVWDF----HGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRES 174
             V           VVK+ACG E  V L + G          YSWG    G+LG G  ++
Sbjct: 164 FKVPGGSSAKSHLRVVKLACGWEISVILTADGR--------VYSWGTFRCGELGQGSYKN 215

Query: 175 RLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGT 234
             +  I  T  +    A+ ++  G+ H   LT+        E   + +G  + GQLG  T
Sbjct: 216 SQKTSIQFTPLKVPKKAIVQLAAGADHLIALTN--------EGKVYGWGSNQKGQLGRPT 267

Query: 235 TQSALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEA 294
           ++   +   V +      +  V CG  H+  +   G++++WG+    G     S      
Sbjct: 268 SERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNI-FGQLGAGS------ 320

Query: 295 GDAISPILISGNGPHGPKFQDP------VQVACGAAHTVLVTDDGYKLWSWGRGRSGVLG 348
            D     L +      P ++          ++ G +H++++  DG  L+++GRG  G LG
Sbjct: 321 -DGEIGALTT-----KPNYKQLLSGVTICSISAGESHSLILRKDG-TLYAFGRGDRGQLG 373

Query: 349 TGKTIDFFAPAIVLWPPLTEEFKQDELNTGGLDDEIKTKD 388
             +        +     L+   K +++  G   +  +T D
Sbjct: 374 IQE---EITIDVSTPTKLSVAIKLEQVACGTHHNIARTDD 410

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.9
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.85
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.82
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.79
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.16
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.11
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.01
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 98.92
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.87
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.76
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.7
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.22
KOG0646476 consensus WD40 repeat protein [General function pr 90.51
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.26
KOG0315311 consensus G-protein beta subunit-like protein (con 81.51
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=6.6e-40  Score=327.29  Aligned_cols=314  Identities=24%  Similarity=0.377  Sum_probs=231.3

Q ss_pred             eeEEEecccceeeEEEcCCCceecCC---CCcccceeeehhhccCCCCCC-----CCccccCCCC------CCCEEEEEe
Q 010683           14 FTCFFMPFICYTSLNCCMDGQLGFSG---SNSLVPCVIEQFLTIGAPDSL-----EDDSKTNHKA------PIKICSVKA   79 (504)
Q Consensus        14 ~~i~~ia~G~~h~~~l~~~GqlG~~~---~~~~~p~~i~~~~~l~~~~~~-----~~~~~~~~~~------~~~I~~Va~   79 (504)
                      +.++.+++|+.|+++++.||+|+.|+   .+.++|.......+...+...     ..-+|.+.+.      +.+|++++|
T Consensus       104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c  183 (476)
T COG5184         104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC  183 (476)
T ss_pred             eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence            77999999999999999999996664   556666552111111100000     1112233322      568999999


Q ss_pred             cCceeEEEecCCcEEEecCCCCCCCCCCCCCccccc----ccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCcc
Q 010683           80 GGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSS----FTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLV  155 (504)
Q Consensus        80 G~~hs~alt~~G~v~~wG~n~~gGqlg~g~~~~~~~----~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~  155 (504)
                      |++++++|+++|+||.||.... +-++.+.......    ++|..+.   ...|+++++|.+|.++|+++|        +
T Consensus       184 g~e~svil~~~G~V~~~gt~r~-~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G--------~  251 (476)
T COG5184         184 GWEISVILTADGRVYSWGTFRC-GELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEG--------K  251 (476)
T ss_pred             CCceEEEEccCCcEEEecCccc-cccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCC--------c
Confidence            9999999999999999999877 5666664333332    4454444   357999999999999999999        6


Q ss_pred             EEEecCCCCCCCCCCCCCCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCC
Q 010683          156 CYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTT  235 (504)
Q Consensus       156 ly~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~  235 (504)
                      ||+||+|..||||....+....+..+..+-...  .|+.|+||.+|+++|+++|+        +|+||.|.+||||.+..
T Consensus       252 vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~--~i~~vacG~~h~~al~~~G~--------i~a~G~n~fgqlg~~~~  321 (476)
T COG5184         252 VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR--NIKYVACGKDHSLALDEDGE--------IYAWGVNIFGQLGAGSD  321 (476)
T ss_pred             EEEecCCcccccCCchhhhcccccccCChhhhh--hhhhcccCcceEEEEcCCCe--------EEEeccchhcccccCcc
Confidence            799999999999999888876666665433221  47889999999999999999        99999999999999822


Q ss_pred             C----ceecceEeeecCCceEEEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCC
Q 010683          236 Q----SALVPEQVKELPQYVYLVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGP  311 (504)
Q Consensus       236 ~----~~~~p~~v~~l~~~~~i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~  311 (504)
                      .    ....|.... +.....|.+|++|..|+++|..+|.||+||++...+++....    ...+...|..+..      
T Consensus       322 ~~~~a~~tk~~~~~-~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~----~~~~~~~~~~ls~------  390 (476)
T COG5184         322 GEIGALTTKPNYKQ-LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEE----ITIDVSTPTKLSV------  390 (476)
T ss_pred             cccceeeccccccc-cCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccc----ceeecCCcccccc------
Confidence            1    112333332 335567999999999999999999999999987333322110    0223334444432      


Q ss_pred             CCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCCC-eecceEee
Q 010683          312 KFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTID-FFAPAIVL  362 (504)
Q Consensus       312 ~~~~I~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~~-~~~P~~v~  362 (504)
                       ..++.+++||..|+++.+.+| .||+||+|++||||+|...+ +..|+.+.
T Consensus       391 -~~~~~~v~~gt~~~~~~t~~g-svy~wG~ge~gnlG~g~~~~~~~~pt~i~  440 (476)
T COG5184         391 -AIKLEQVACGTHHNIARTDDG-SVYSWGWGEHGNLGNGPKEADVLVPTLIR  440 (476)
T ss_pred             -ccceEEEEecCccceeeccCC-ceEEecCchhhhccCCchhhhcccccccc
Confidence             345889999999999999999 99999999999999998654 66666664

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-24
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-24
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-23
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-06
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-23
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-18
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-05
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 5e-14
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-04
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 6e-14
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 1e-04
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-09
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-05
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 133/295 (45%), Gaps = 45/295 (15%)
Query: 72  IKICSVKAGGMMSLAIDNAGALWMWG---NCPLPDSSTEGGFSLVSSFTPSPVWDFHGHT 128
           I+I  +  G    LA+   G +  WG   N  L    TE       S  P  +  F G  
Sbjct: 111 IRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIR 164
Query: 129 VVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDS 188
           +  VA G+EH  A+         ED   Y WG    G LGLGDR  RL P+ + +   + 
Sbjct: 165 IKXVAAGAEHTAAVT--------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK 216
Query: 189 PWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP 248
                 V CG  HT  +++            +T+G  + GQLGHG  +  L+P +++ L 
Sbjct: 217 ---XSXVACGWRHTISVSY--------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 265
Query: 249 QYVYLVSVDCGLFHTSVVSSAGDVWSWGMEK--GLGLCPNASLTRNEAGDAISPILISGN 306
              ++  +  G  HT  ++S G ++ WG  K   +G+  N         D  SP+ +   
Sbjct: 266 NS-FISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL--------DQCSPVQV--- 313
Query: 307 GPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
               P  Q  VQV+CG  HT+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 314 --RFPDDQKVVQVSCGWRHTLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 365
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-72
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-60
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-57
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-52
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-21
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-71
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-52
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-51
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-50
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-35
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 7e-18
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-09
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-69
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-60
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-55
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-49
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-48
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-27
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-67
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-51
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-42
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-39
3of7_A 473 Regulator of chromosome condensation; beta-propell 7e-18
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-61
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-51
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-49
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-18
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-26
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-24
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-18
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  233 bits (597), Expect = 5e-72
 Identities = 91/336 (27%), Positives = 142/336 (42%), Gaps = 64/336 (19%)

Query: 32  DGQLGF-SGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNA 90
            G+LG  + S+   P  I+                      I+I  +  G    LA+   
Sbjct: 98  FGRLGHGNSSDLFTPLPIKAL------------------HGIRIKQIACGDSHCLAVTME 139

Query: 91  GALWMWGNCP---LPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGE 147
           G +  WG      L    TE       S  P  +  F G  +  VA G+EH  A+   G+
Sbjct: 140 GEVQSWGRNQNGQLGLGDTE------DSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193

Query: 148 TYKGEDLVCYSWGANNNGQLGLGDRESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTH 207
                    Y WG    G LGLGDR  RL P+ + +   +    +  V CG  HT  +++
Sbjct: 194 --------LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEK---MSMVACGWRHTISVSY 242

Query: 208 RKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVYLVSVDCGLFHTSVVS 267
                       +T+G  + GQLGHG  +  L+P +++ L     +  +  G  HT  ++
Sbjct: 243 SGA--------LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSF-ISQISGGWRHTMALT 293

Query: 268 SAGDVWSWGM-EKG-LGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAH 325
           S G ++ WG  + G +G+            D  SP+ +       P  Q  VQV+CG  H
Sbjct: 294 SDGKLYGWGWNKFGQVGV--------GNNLDQCSPVQVR-----FPDDQKVVQVSCGWRH 340

Query: 326 TVLVTDDGYKLWSWGRGRSGVLGTGKTIDFFAPAIV 361
           T+ VT+    +++WGRG +G LG G+++D   P I+
Sbjct: 341 TLAVTERN-NVFAWGRGTNGQLGIGESVDRNFPKII 375
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.32
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 93.22
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 89.51
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 83.33
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=5.2e-54  Score=447.32  Aligned_cols=311  Identities=29%  Similarity=0.466  Sum_probs=264.5

Q ss_pred             eeEEEecccceeeEEEcCCCceecCCCCcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCC-c
Q 010683           14 FTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAG-A   92 (504)
Q Consensus        14 ~~i~~ia~G~~h~~~l~~~GqlG~~~~~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G-~   92 (504)
                      .+++.|++|..|+++++++|+|+.|+.+..+      .+.++.......|..++.....+|++|+||..|++||+++| +
T Consensus        16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~G------qLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~   89 (406)
T 4d9s_A           16 RKVLIISAGASHSVALLSGDIVCSWGRGEDG------QLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME   89 (406)
T ss_dssp             CCEEEEEECSSEEEEEETTTEEEEEECCTTS------TTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred             cceEEEecCCCeEEEEEeCCEEEEEeCCCCC------CCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence            5799999999999999999999877655431      11112122223344455556779999999999999999886 9


Q ss_pred             EEEecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeecCCccEEEecCCCCCCCCCCCC
Q 010683           93 LWMWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGDR  172 (504)
Q Consensus        93 v~~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~~~~~ly~wG~n~~GqLG~g~~  172 (504)
                      ||+||.|.+ ||||.+..  .....|.++..+.+.+|++|+||.+|++||+++|        .||+||.|.+||||.++.
T Consensus        90 v~~wG~n~~-GqLG~g~~--~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G--------~v~~wG~n~~GqLG~g~~  158 (406)
T 4d9s_A           90 VYSWGWGDF-GRLGHGNS--SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG--------EVQSWGRNQNGQLGLGDT  158 (406)
T ss_dssp             EEEEECCGG-GTTCSSSC--CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTS--------CEEEEECCTTSTTCSSSC
T ss_pred             EEEEcCCCC-cCCCCCCC--CccccceEecccCCCCEEEEEEChhheEEEcCCC--------cEEEeCCCCCccCCCCCC
Confidence            999999999 89998864  4567788888888889999999999999999999        579999999999999999


Q ss_pred             CCcccceEEeecCCCCCCcEEEEeecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecCCceE
Q 010683          173 ESRLRPKIIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELPQYVY  252 (504)
Q Consensus       173 ~~~~~p~~v~~l~~~~~~~I~~Ia~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~~~~~  252 (504)
                      .....|+++..+...   +|++|+||.+|+++|+++|+        ||+||.|.+||||.++......|+++..+ ...+
T Consensus       159 ~~~~~p~~v~~~~~~---~i~~va~G~~hs~alt~~G~--------v~~wG~n~~GqlG~g~~~~~~~p~~v~~~-~~~~  226 (406)
T 4d9s_A          159 EDSLVPQKIQAFEGI---RIKMVAAGAEHTAAVTEDGD--------LYGWGWGRYGNLGLGDRTDRLVPERVTST-GGEK  226 (406)
T ss_dssp             CCEEEEEECGGGTTC---CEEEEEECSSEEEEEETTSC--------EEEEECCTTSTTCSSSSCCEEEEEECCCS-TTCC
T ss_pred             CCcccceEecccCCC---cEEEEecCCCeEEEEeCCCC--------EEEeeCCCCCCCCCCCCCCcCccEEeccc-CCce
Confidence            999999999877654   79999999999999999999        99999999999999999889999999766 4568


Q ss_pred             EEEEEecCCeeEEEecCCcEEEEeCCCCCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcC
Q 010683          253 LVSVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDD  332 (504)
Q Consensus       253 i~~Ia~G~~hs~~lt~~G~vy~wG~n~~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~I~~G~~ht~~lt~~  332 (504)
                      |++|+||.+|+++|+++|+||+||.|. +|+++..     .......|.++..     .....|++|+||.+|+++|+++
T Consensus       227 i~~va~G~~ht~~l~~~G~v~~wG~n~-~GqlG~g-----~~~~~~~p~~v~~-----~~~~~v~~i~~G~~hs~alt~~  295 (406)
T 4d9s_A          227 MSMVACGWRHTISVSYSGALYTYGWSK-YGQLGHG-----DLEDHLIPHKLEA-----LSNSFISQISGGWRHTMALTSD  295 (406)
T ss_dssp             EEEEEECSSEEEEEETTCCEEEEECCT-TSTTCSS-----SCCCEEEEEECGG-----GTTSCEEEEEECSSEEEEEETT
T ss_pred             EEEEEECCCcEEEEcCCCCEEEeeCCC-CCCCCCC-----CCcCccccEEecc-----cCCCCEEEEEecCCEEEEEcCC
Confidence            999999999999999999999999997 3333222     2345778988876     3334699999999999999999


Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCeecceEeeCCC
Q 010683          333 GYKLWSWGRGRSGVLGTGKTIDFFAPAIVLWPP  365 (504)
Q Consensus       333 G~~vy~WG~n~~GqLG~g~~~~~~~P~~v~~p~  365 (504)
                      | +||+||+|.+||||.+...+...|++|.+|.
T Consensus       296 G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~  327 (406)
T 4d9s_A          296 G-KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD  327 (406)
T ss_dssp             S-CEEEEECCTTSTTCSSSSSCEEEEEEECCGG
T ss_pred             C-eEEEeeCCCCCCCCCCCCCCCccCEEEeccC
Confidence            9 9999999999999999999999999997663
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-16
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-16
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-15
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.001
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.004
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 3e-16
 Identities = 54/273 (19%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 1   MKLQHYYYHYYLCFTCFFMPFICYTSLNCCMDGQLGFSGSNSLVPCVIEQFLTIGAPDSL 60
           + +                      +L C   GQLG            +    +  P  +
Sbjct: 150 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 209

Query: 61  EDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALWMWGNCPLPDSSTEGGFSLVSSFTPSP 120
              S+ +    ++      G   + AI + G ++ +G        T G  S         
Sbjct: 210 MLKSRGSRGH-VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES-CFIPQNLT 267

Query: 121 VWDFHGHTVVKVACGSEHVVALVSAGETYKGEDLVCYSWGANNNGQLGLGD-RESRLRPK 179
            +     + V  + G  H V + S G+         YS G    G+LGLG+  E +  P 
Sbjct: 268 SFKNSTKSWVGFSGGQHHTVCMDSEGK--------AYSLGRAEYGRLGLGEGAEEKSIPT 319

Query: 180 IIETFNQDSPWAVYEVTCGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSAL 239
           +I         AV  V CG+     +T   R         + +G+G N QLG G  + A 
Sbjct: 320 LISRLP-----AVSSVACGASVGYAVTKDGR--------VFAWGMGTNYQLGTGQDEDAW 366

Query: 240 VPEQVK-ELPQYVYLVSVDCGLFHTSVVSSAGD 271
            P ++  +  +   ++SV  G  HT ++    +
Sbjct: 367 SPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 399
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.96
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.24
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-44  Score=370.18  Aligned_cols=303  Identities=26%  Similarity=0.396  Sum_probs=242.2

Q ss_pred             EEecccceeeEEEcCCCceecCCC--CcccceeeehhhccCCCCCCCCccccCCCCCCCEEEEEecCceeEEEecCCcEE
Q 010683           17 FFMPFICYTSLNCCMDGQLGFSGS--NSLVPCVIEQFLTIGAPDSLEDDSKTNHKAPIKICSVKAGGMMSLAIDNAGALW   94 (504)
Q Consensus        17 ~~ia~G~~h~~~l~~~GqlG~~~~--~~~~p~~i~~~~~l~~~~~~~~~~~~~~~~~~~I~~Va~G~~hs~alt~~G~v~   94 (504)
                      +.-..|.+++|+.+..||||.+..  ....|..+.                    ...+|++|+||..|++||+++|+||
T Consensus        10 ~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~--------------------~~~~i~~ia~G~~h~~al~~~G~vy   69 (401)
T d1a12a_          10 HSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS--------------------IPEDVVQAEAGGMHTVCLSKSGQVY   69 (401)
T ss_dssp             CCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEEC--------------------CSSCEEEEEECSSEEEEEETTSCEE
T ss_pred             EECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeC--------------------CCCCeEEEEeCCCEEEEEeCCCEEE
Confidence            344567888888888888887643  344555554                    2356999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCcccccccceeecCCCCCeEEEEEecCCeEEEEEcCCCeeec-----------------------
Q 010683           95 MWGNCPLPDSSTEGGFSLVSSFTPSPVWDFHGHTVVKVACGSEHVVALVSAGETYKG-----------------------  151 (504)
Q Consensus        95 ~wG~n~~gGqlg~g~~~~~~~~~p~~v~~l~~~~I~~Va~G~~hs~alt~~G~vy~~-----------------------  151 (504)
                      +||.|.+ ||||.+.......+.|.  ......+|++|+||..|+++++++|++|.+                       
T Consensus        70 ~wG~n~~-GQLG~g~~~~~~~~~~~--~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~  146 (401)
T d1a12a_          70 SFGCNDE-GALGRDTSVEGSEMVPG--KVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPV  146 (401)
T ss_dssp             EEECCTT-STTCSCCCSTTGGGSCE--ECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEE
T ss_pred             EEeCCCC-CCCCccccccccccccc--ccccccceeeecccccceeeccccccceeccccccccccccccCCccccceee
Confidence            9999999 89999865544444444  444566899999999999999999999861                       


Q ss_pred             ----------------------CCccEEEecCCCCCCCCCCCCCC-----------cccceEEeecC--CCCCCcEEEEe
Q 010683          152 ----------------------EDLVCYSWGANNNGQLGLGDRES-----------RLRPKIIETFN--QDSPWAVYEVT  196 (504)
Q Consensus       152 ----------------------~~~~ly~wG~n~~GqLG~g~~~~-----------~~~p~~v~~l~--~~~~~~I~~Ia  196 (504)
                                            .++.+|+||.|.+||||......           ...|..+....  .....+|.+|+
T Consensus       147 ~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~  226 (401)
T d1a12a_         147 QVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF  226 (401)
T ss_dssp             EECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEE
T ss_pred             eeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEE
Confidence                                  47889999999999999864321           12344433221  11223799999


Q ss_pred             ecCceEEEEecCCCCCCCCCCeEEEEecCCCCCCCCCCCCceecceEeeecC-CceEEEEEEecCCeeEEEecCCcEEEE
Q 010683          197 CGSFHTALLTHRKRPNDMLESMCWTFGLGENGQLGHGTTQSALVPEQVKELP-QYVYLVSVDCGLFHTSVVSSAGDVWSW  275 (504)
Q Consensus       197 ~G~~ht~~Lt~~G~~~~~~~~~vy~wG~n~~GQLG~g~~~~~~~p~~v~~l~-~~~~i~~Ia~G~~hs~~lt~~G~vy~w  275 (504)
                      ||..|+++|+++|+        ||+||.|.+||+|.........+..+..+. ....++.+++|..|+++++++|+||+|
T Consensus       227 ~g~~~~~~l~~~g~--------v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~w  298 (401)
T d1a12a_         227 CGAYFTFAISHEGH--------VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL  298 (401)
T ss_dssp             EETTEEEEEETTCC--------EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred             ecCCeEEEEecCCe--------EeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEe
Confidence            99999999999999        999999999999999888877777776554 235699999999999999999999999


Q ss_pred             eCCC--CCCCCCCCCCCCCCCCCceeeEEeeCCCCCCCCCCCcEEEEecCceeEEEEcCCCeEEEEeCCCCCCCCCCCCC
Q 010683          276 GMEK--GLGLCPNASLTRNEAGDAISPILISGNGPHGPKFQDPVQVACGAAHTVLVTDDGYKLWSWGRGRSGVLGTGKTI  353 (504)
Q Consensus       276 G~n~--~lG~~~~~~~~~~~~~~~~~P~~i~~~~~~~~~~~~I~~I~~G~~ht~~lt~~G~~vy~WG~n~~GqLG~g~~~  353 (504)
                      |.|.  |+|.+.       .......|..+..       ..+|++|+||.+|++||+++| +||+||+|.+||||+|+..
T Consensus       299 G~n~~gqlG~g~-------~~~~~~~P~~i~~-------~~~i~~Is~G~~hs~alt~dG-~v~~WG~n~~GQLG~G~~~  363 (401)
T d1a12a_         299 GRAEYGRLGLGE-------GAEEKSIPTLISR-------LPAVSSVACGASVGYAVTKDG-RVFAWGMGTNYQLGTGQDE  363 (401)
T ss_dssp             ECCGGGTTCSCT-------TCCCEEEEEECCS-------SSSEEEEEECSSEEEEEETTS-CEEEEECCTTSTTCSSSCS
T ss_pred             cccccCccCCCc-------ccccccCCEEcCC-------CCCeEEEEeeCCEEEEEeCCC-eEEEEecCCCCCCCCCCCC
Confidence            9986  444422       2345677888875       457999999999999999999 9999999999999999999


Q ss_pred             CeecceEeeCCC
Q 010683          354 DFFAPAIVLWPP  365 (504)
Q Consensus       354 ~~~~P~~v~~p~  365 (504)
                      +...|++|..+.
T Consensus       364 ~~~~P~~v~~~~  375 (401)
T d1a12a_         364 DAWSPVEMMGKQ  375 (401)
T ss_dssp             CEEEEEECCSTT
T ss_pred             CEecCEEeeccC
Confidence            999999986553
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure