Citrus Sinensis ID: 010711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccHHHcccccccEEEcccccccccHHHHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccHHHHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEEEccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccHHHHHccccccccEEEccccccccccHHHHHccccccEEEccccccccccHHHccccccccEEcccccccccHHHHHHHHccccccEEEcccccccHHHHHHccccccccEEEcccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccccccHcccccccEEEccccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccHHHEcccc
Coil and Loop (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALqdlclgqypgvndkWMDVIASQGSSLlsvdlsgsdvtdsglihlkdcsnlqsldfnFCIQisdgglehlrglsnltslsfRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIkwcncitdsdmkplsgltnlkslQISCSKVTDSGIAYLKGLQKLTllnlegcpvtAACLDSLSALGSLFYLnlnrcqlsddgcekfskigslkvlnlgfneITDECLVHLkgltnleslnldscgigdeglvnltglcnlkclelsdtqvgssglrhlsgltnlesinlsftgisdgslrklaglsslkslnldarQITDTGLAALtsltglthldlfgaritDSGAAYLRNFKNLRSLEIcgggltdagvkhikdlssltllnlsqncnltdkTLELISGLTGlvslnvsnsritsaglrhlkplknlrsltlESCKVTANDIkrlqsrdlpnlvsfrpe
Flexible Loop (DISEMBL)
mlprdisqqIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGlvnlkglmkLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSritsaglrhlkplknlrslTLESCKVtandikrlqsrdlpnlvsfrpe
Low Complexity Region (SEG)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQgssllsvdlsgsdvtdsglIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYlkglqkltllnlEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQItdtglaaltsltglthlDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDlssltllnlsqncnlTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered region (IsUnstruct)
********QIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDI*****************
Disordered Region (DISOPRED)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered Region (DISEMBL)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Disordered Region (DISPRO)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	503	2.2.26 [Sep-21-2011]
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.576	0.725	0.328	5e-18
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.576	0.725	0.328	5e-18
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.602	0.724	0.322	6e-18
Q723K6	800	Internalin-A OS=Listeria	yes	no	0.662	0.416	0.315	8e-15
G2K3G6	800	Internalin-A OS=Listeria	yes	no	0.662	0.416	0.312	1e-14
P0DJM0	800	Internalin-A OS=Listeria	yes	no	0.662	0.416	0.310	7e-14
Q723X5	1775	Internalin-I OS=Listeria	no	no	0.693	0.196	0.277	1e-12
Q8NEE6	735	F-box/LRR-repeat protein	no	no	0.721	0.493	0.249	2e-11
P23799	630	Putative adenylate cyclas	N/A	no	0.779	0.622	0.287	1e-10
Q9C5D2	610	F-box/LRR-repeat protein	no	no	0.892	0.736	0.285	1e-10

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.
Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 48/338 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR 488
           +   +RIT  GL  +  L  L+ L L   ++T ++  R
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMTDSEKVR 400

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 184/353 (52%), Gaps = 50/353 (14%)

Query: 176 LSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           + G+ N++SL +S C  +TD+G+ +                        +  +GSL  LN
Sbjct: 86  IQGMANIESLNLSGCYNLTDNGLGH----------------------AFVQEIGSLRALN 123

Query: 235 LNRC-QLSDDGCEKFSK-IGSLKVLNLG-FNEITDECLVHLK-GLTNLESLNLDSC-GIG 289
           L+ C Q++D    + ++ +  L+VL LG  + IT+  L+ +  GL  L+SLNL SC  + 
Sbjct: 124 LSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLS 183

Query: 290 DEGLVNLTGLCN--------LKCLELSDTQ-VGSSGLRHLS-GLTNLESINLSFTG-ISD 338
           D G+ +L G+          L+ L L D Q +    L+H+S GLT L  +NLSF G ISD
Sbjct: 184 DVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISD 243

Query: 339 GSLRKLAGLSSLKSLNLDA-RQITDTGLA--ALTSLTGLTHLDL-FGARITDSGAAYL-R 393
             L  L+ + SL+SLNL +   I+DTG+   A+ SL  L+ LD+ F  ++ D   AY+ +
Sbjct: 244 AGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLR-LSGLDVSFCDKVGDQSLAYIAQ 302

Query: 394 NFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS-GLTGLVSLN 451
               L+SL +C   ++D G+ + ++ +  L  LN+ Q   +TDK LELI+  L+ L  ++
Sbjct: 303 GLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGID 362

Query: 452 VSN-SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
           +   +RIT  GL  +  L  L+ L L   ++T  D ++    D   L + R  
Sbjct: 363 LYGCTRITKRGLERITQLPCLKVLNLGLWQMT--DSEKEARGDFSPLFTVRTR 413

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 124/393 (31%), Positives = 183/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  LSNLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLSNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T+    Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQEWTNPPVNYKV 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LKD + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKDLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTNLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYAEPDIT 459

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 184/393 (46%), Gaps = 60/393 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 98  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLF-N 151

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   +     L NL +L+L   T     +  L GL  L+ L+    N +TD  +KPL
Sbjct: 152 NQIT--DIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF--GNQVTD--LKPL 203

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG---SLFYL 233
           + LT L+ L IS +KV+D  +     L KLT  NLE    T   +  ++ LG   +L  L
Sbjct: 204 ANLTTLERLDISSNKVSDISV-----LAKLT--NLESLIATNNQISDITPLGILTNLDEL 256

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +LN  QL D G    + + +L  L+L  N+I++  L  L GLT L  L L +  I +  +
Sbjct: 257 SLNGNQLKDIGT--LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--I 310

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD----GSLRK------ 343
             L GL  L  LEL++ Q+    +  +S L NL  + L F  ISD     SL K      
Sbjct: 311 SPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 368

Query: 344 ----------LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 393
                     LA L+++  L+    QI+D  L  L +LT +T L L     T++   Y  
Sbjct: 369 YNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKA 426

Query: 394 N------FKNLRSLEICGGGLTDAGVKHIKDLS 420
           N       KN+    I    ++D G     D++
Sbjct: 427 NVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 459

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 189/422 (44%), Gaps = 73/422 (17%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
           +E L+ L NLTSL+   NN      +     L+NLV L+L      +  LVNL G     
Sbjct: 172 IEGLQYLENLTSLNLSENN---ISDLAPIKDLVNLVSLNLSS----NRTLVNLSG----- 219

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
                            + GL NL+ L +S +K  +  I+ +  L  L  ++ +GC +  
Sbjct: 220 -----------------VEGLVNLQELNVSANKALED-ISQVAALPVLKEISAQGCNIKT 261

Query: 219 ACLDSLSA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLT 276
             LD+ +   L  L    L    L+D      +K+  LK L +  N  + + L  LKG T
Sbjct: 262 LELDNPAGAILPELETFYLQENDLTD--LTSLAKLPKLKNLYIKGNA-SLKSLATLKGAT 318

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES-INLSFTG 335
            L+ ++  +C    E L +++GL  L+ ++LS    G S L+ ++ L +L + +N++   
Sbjct: 319 KLQLIDASNC-TDLETLGDISGLSELEMIQLS----GCSKLKEITSLKDLPNLVNITADS 373

Query: 336 ISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            +   L  L  L  L++L L D + +T+  + A+T +  L  L L G  IT  G   L N
Sbjct: 374 CAIEDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGCGITSIGT--LDN 429

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN----------------CNLTDKTL 438
              L  L++    LT   +  I DL  L+ L++S N                 N++   L
Sbjct: 430 LPKLEKLDLKENQLTS--ISEINDLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRL 487

Query: 439 ELISGLTGLVSL---NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
             +S LT   SL   NVSN+ I + G   +  L +L+    ++  V+  DI  +   D+P
Sbjct: 488 SDVSTLTNFPSLNYINVSNNVIRTVG--KMTELPSLKEFYAQNNNVS--DISMIH--DMP 541

Query: 496 NL 497
           NL
Sbjct: 542 NL 543

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 197/449 (43%), Gaps = 86/449 (19%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFC 91
           LQ+L +   P   D+ M  I+     +L ++LS + +T+  +  L +   NLQ+L   +C
Sbjct: 247 LQELNVSDCPTFTDESMRHISEGCPGVLCLNLSNTTITNRTMRLLPRHFHNLQNLSLAYC 306

Query: 92  IQISDGGLEHLR---GLSNLTSLSFRRNNAITAQGMKAFA----GLINL----------- 133
            + +D GL++L    G   L  L       I+ QG +  A    G+++L           
Sbjct: 307 RRFTDKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCTGIMHLTINDMPTLTDN 366

Query: 134 -VKLDLERCTRI---------HGGLVNLKGL--MKLESLNIKWCNCITDSDMKPL-SGLT 180
            VK  +E+C+RI         H      + L   KL  +  +    +TD+  K +     
Sbjct: 367 CVKALVEKCSRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYP 426

Query: 181 NLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
           NL  + ++ C  +TDS +  L  L++LT+LNL  C                         
Sbjct: 427 NLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANC------------------------- 461

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTG 298
                         +++ ++G  +  D           +  LNL +C  + D  ++ L+ 
Sbjct: 462 --------------VRIGDMGLKQFLDG-----PASMRIRELNLSNCVRLSDASVMKLSE 502

Query: 299 LC-NLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL- 355
            C NL  L L + + + + G+ ++  + +L SI+LS T IS+  L  L+    LK L++ 
Sbjct: 503 RCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNVLSRHKKLKELSVS 562

Query: 356 DARQITDTGLAAL-TSLTGLTHLDL-FGARITDSGAAYLRNF-KNLRSLEICG-GGLTDA 411
           +  +ITD G+ A   S   L HLD+ + ++++D     L  +  NL SL I G   +TD+
Sbjct: 563 ECYRITDDGIQAFCKSSLILEHLDVSYCSQLSDMIIKALAIYCINLTSLSIAGCPKITDS 622

Query: 412 GVKHIK-DLSSLTLLNLSQNCNLTDKTLE 439
            ++ +      L +L++S    LTD+ LE
Sbjct: 623 AMEMLSAKCHYLHILDISGCVLLTDQILE 651

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 209/441 (47%), Gaps = 49/441 (11%)

Query: 66  GSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN--NAITAQG 123
           GS++ D  L  L+D   L+ LD + C  +    L  +  L NL  L  +R   N +    
Sbjct: 121 GSELQD--LTALRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSS 178

Query: 124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN-IKWCNCITDSD-MKPLSGLTN 181
           +     L++L ++D  R      G+ ++ GL +L++L  +   NCI  +     +  L  
Sbjct: 179 IGLLKFLVHL-EVDGSR------GVTDITGLFRLKTLEALSLDNCINITKGFDKICALPQ 231

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS 241
           L SL +  + VTD  +  +    KL +L++  C      L ++  + SL  L+L+ C   
Sbjct: 232 LTSLSLCQTNVTDKDLRCIHPDGKLKMLDISSCHEITD-LTAIGGVRSLEKLSLSGCWNV 290

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 301
             G E+  K  +L+ L++    +    +V LK L NL+ L++ +C    + L  L  L N
Sbjct: 291 TKGLEELCKFSNLRELDISGCLVLGSAVV-LKNLINLKVLSVSNCK-NFKDLNGLERLVN 348

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLN 354
           L+ L LS    G S L  ++ L+NL+ +++S       F G+ D        L++L+ L 
Sbjct: 349 LEKLNLSGCH-GVSSLGFVANLSNLKELDISGCESLVCFDGLQD--------LNNLEVLY 399

Query: 355 L-DARQITDTGLAALTSLTGLTHLDLFGA-RITD-SGAAYLRNFKNLRSLEICGGGLTDA 411
           L D +  T+ G  A+ +L+ +  LDL G  RIT  SG   L+  + L SLE CG  ++  
Sbjct: 400 LRDVKSFTNVG--AIKNLSKMRELDLSGCERITSLSGLETLKGLEEL-SLEGCGEIMS-- 454

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNL 471
               I  L  L +L +S+  NL D  L  +  LTGL  + +   R  +    +  P+ NL
Sbjct: 455 -FDPIWSLYHLRVLYVSECGNLED--LSGLQCLTGLEEMYLHGCRKCT----NFGPIWNL 507

Query: 472 RSL-TLE-SCKVTANDIKRLQ 490
           R++  LE SC    +D+  LQ
Sbjct: 508 RNVCVLELSCCENLDDLSGLQ 528

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 237/512 (46%), Gaps = 63/512 (12%)

Query: 13  ELVYSRCLTEVSLEAFRD--CALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT 70
           E V S  LT+  L A  +    +++L L   P V+   +  +A + +SL S+DL G  V 
Sbjct: 120 ENVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVG 179

Query: 71  DSGLIHL-KDCSNLQSLDFNFCIQISD-GGLEHLRGLS-NLTSLSFRRNNAITAQGMKAF 127
           D GL  + K C  L+ L+  FC  ++D G ++ + G S +L S+    +  IT   ++A 
Sbjct: 180 DQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAV 239

Query: 128 AG---LINLVKLDLERCTRIH-GGLVNL-KGLMKLESLNIKWCNCITDSDMKPLSGL-TN 181
                L+ ++ LD E    IH  GL+ + +G  +L++L ++ C  +TD     +  L T+
Sbjct: 240 GSHCKLLEVLYLDSE---YIHDKGLIAVAQGCHRLKNLKLQ-CVSVTDVAFAAVGELCTS 295

Query: 182 LKSLQI-SCSKVTDSGI-AYLKGLQKLTLLNLEGCP-VTAACLDSLS-ALGSLFYLNLNR 237
           L+ L + S    TD G+ A  KG +KL  L L  C  V+   L++++     L  + +N 
Sbjct: 296 LERLALYSFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEING 355

Query: 238 CQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSC-GIGD-- 290
           C  +   G E   K    LK L L +   I +  L  + KG  +LE L+L  C GIGD  
Sbjct: 356 CHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIA 415

Query: 291 -----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL 344
                +G  NL  L   +C E+ +  + S G +H   LT L   +L F   + + +L  +
Sbjct: 416 MCSIAKGCRNLKKLHIRRCYEIGNKGIISIG-KHCKSLTEL---SLRFCDKVGNKALIAI 471

Query: 345 AGLSSLKSLNLDA-RQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
               SL+ LN+    QI+D G+ A+      LTHLD+          + L+N  ++   E
Sbjct: 472 GKGCSLQQLNVSGCNQISDAGITAIARGCPQLTHLDI----------SVLQNIGDMPLAE 521

Query: 403 ICGGG--LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           +  G   L D  + H   ++   L +L Q C L + T  +           V    ITSA
Sbjct: 522 LGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLE-TCHM-----------VYCPGITSA 569

Query: 461 GLRH-LKPLKNLRSLTLESCKVTANDIKRLQS 491
           G+   +    +++ + +E  KVT    +R  S
Sbjct: 570 GVATVVSSCPHIKKVLIEKWKVTERTTRRAGS 601

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
225463572	578	PREDICTED: F-box/LRR-repeat protein 14 [	1.0	0.870	0.803	0.0
449436168	578	PREDICTED: F-box/LRR-repeat protein 14-l	1.0	0.870	0.783	0.0
359484681	578	PREDICTED: insulin-like growth factor-bi	1.0	0.870	0.759	0.0
356519276	577	PREDICTED: F-box/LRR-repeat protein 14-l	0.998	0.870	0.796	0.0
357458869	585	F-box/LRR-repeat protein [Medicago trunc	1.0	0.859	0.749	0.0
224120462	576	predicted protein [Populus trichocarpa]	0.998	0.871	0.741	0.0
182407840	580	F-box-containing protein 1 [Malus x dome	1.0	0.867	0.747	0.0
388500850	577	unknown [Medicago truncatula]	1.0	0.871	0.751	0.0
297844484	578	leucine-rich repeat family protein [Arab	0.998	0.868	0.777	0.0
357468127	573	F-box/LRR-repeat protein [Medicago trunc	0.988	0.867	0.748	0.0

>gi|225463572|ref|XP_002270172.1| PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera] gi|297743556|emb|CBI36423.3| unnamed protein product [Vitis vinifera]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/503 (80%), Positives = 459/503 (91%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIFNELV+S+CLT+VSL+AF+DCALQD+ LG+YPGV+D WMDVI+SQG SLL
Sbjct: 76  MLPRDISQQIFNELVFSQCLTDVSLKAFQDCALQDIYLGEYPGVSDSWMDVISSQGVSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS++T+SGLIHLKDC+NLQ+L+ N+C QISD GL+H+ GLSNLT+LSFRRNNAIT
Sbjct: 136 SVDLSGSEITNSGLIHLKDCTNLQALNLNYCDQISDHGLKHISGLSNLTTLSFRRNNAIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGGL++LKGL KLESLNI  C+CITD+D+KPLSGLT
Sbjct: 196 AQGMSAFSSLVNLVKLDLERCPGIHGGLIHLKGLTKLESLNINMCHCITDADLKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK L+IS SKVTD G+AYLKGL KL LLN+EGCPVTAACL+SLS L SL  LNLNR  L
Sbjct: 256 NLKGLEISRSKVTDDGVAYLKGLHKLALLNMEGCPVTAACLESLSDLPSLLSLNLNRSML 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SDDGCE F++  +L+VLNLGFN++TD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDDGCENFARQENLRVLNLGFNDLTDACLVHLKGLTNLESLNLDSCRICDEGLANLTGLR 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LKCLELSDT+VGS+GLRHLSGL NLESINLSFT ++D  LRKL+ LSSLKSLNLDARQI
Sbjct: 376 HLKCLELSDTEVGSNGLRHLSGLANLESINLSFTAVTDSGLRKLSALSSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAALTSLTGLTHLDLFGARITDSG +YLRNFKNL+SLEICGGGLTDAGVK+IKDL+
Sbjct: 436 TDAGLAALTSLTGLTHLDLFGARITDSGTSYLRNFKNLQSLEICGGGLTDAGVKNIKDLT 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
            LT+LNLSQNCNLTDK+LELISGLT LVSL+VSNSRIT+AGL+HLK LKNL+SLTL+SCK
Sbjct: 496 CLTVLNLSQNCNLTDKSLELISGLTALVSLSVSNSRITNAGLQHLKQLKNLKSLTLDSCK 555

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           VT NDIK+LQS+DLPNLVSFRPE
Sbjct: 556 VTVNDIKKLQSKDLPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436168|ref|XP_004135866.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus] gi|449509305|ref|XP_004163550.1| PREDICTED: F-box/LRR-repeat protein 14-like [Cucumis sativus]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/503 (78%), Positives = 451/503 (89%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQ I NELVYS+ LT++S++AFRDCALQDL  G+ PGVND W+DVI+SQGSS+L
Sbjct: 76  MLPRDLSQLILNELVYSQLLTDISIQAFRDCALQDLHFGECPGVNDAWIDVISSQGSSVL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL++L++CSNLQSL+ NFC  ISD GL H+ G S LTSLSFR+N+ IT
Sbjct: 136 SVDLSGSEVTDSGLMNLRNCSNLQSLNLNFCEHISDRGLAHIGGFSRLTSLSFRKNSEIT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM  FA L+NL++LDLE+C  IHGGLV+L+GL KLESLNIKWCNCITDSD+KPLSGLT
Sbjct: 196 AQGMSVFAHLVNLIRLDLEKCPGIHGGLVHLQGLRKLESLNIKWCNCITDSDIKPLSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQISCSKVTD+GIAYLKGL KL+LLNLEGCPVTAACL +LSALG+L YLNL+RC +
Sbjct: 256 NLKGLQISCSKVTDAGIAYLKGLHKLSLLNLEGCPVTAACLYTLSALGALQYLNLSRCHI 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           +DDG E+FS +G+LK+LNLGFN+ITDECLVHLKGLTNLESLNLDSC I D+GLVNL  L 
Sbjct: 316 TDDGSEQFSGLGALKILNLGFNDITDECLVHLKGLTNLESLNLDSCRIEDDGLVNLKALH 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT VGS+GLRHLSGL NLE +NLSFT ++D  L+KL+GLSSLKSLNLD RQI
Sbjct: 376 RLKCLELSDTDVGSNGLRHLSGLFNLEKLNLSFTVVTDIGLKKLSGLSSLKSLNLDTRQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA+LT L GLTHLDLFGARITDSG  YLRNFKNL+SLEICGGGLTDAGVK+IKDLS
Sbjct: 436 TDIGLASLTGLVGLTHLDLFGARITDSGTNYLRNFKNLQSLEICGGGLTDAGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SL +LNLSQN NLTDK+LELISGLTGLVSLN+SNSRITSAGLRHLK LKNL+ LTLE+C+
Sbjct: 496 SLMVLNLSQNGNLTDKSLELISGLTGLVSLNISNSRITSAGLRHLKTLKNLKQLTLEACR 555

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           V+A+DIK+LQS DLPNLVSFRPE
Sbjct: 556 VSASDIKKLQSTDLPNLVSFRPE 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484681|ref|XP_002262830.2| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera] gi|296084545|emb|CBI25566.3| unnamed protein product [Vitis vinifera]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/503 (75%), Positives = 442/503 (87%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQIF+  V S CLT  SLEAFRDCA+QD+ LG+YP VND WMD+I+SQG SLL
Sbjct: 76  MLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLL 135

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS VTD GL  LKDCSN+Q L FN+C QIS+ GL+++ GLSNLTSLSF+++N +T
Sbjct: 136 SVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVT 195

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL KLDLERC+RIHGGL++LKGL KLESLNI++C CITDSD+K LSGLT
Sbjct: 196 AEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLT 255

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LK LQ+SCS +TD GI+YLKGL KL LL++EGC VT +CLDSLSAL +L YLNLNRC L
Sbjct: 256 SLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGL 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LKVLN+GFN ITD CLVHLKGLTNLESLNLDSC I DEGL NLTGL 
Sbjct: 316 SDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLS 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LKCLELSDT+VGS+GL HLSGLT LES+NLSFT ++D  L+KL GL+SLKSLNLDARQI
Sbjct: 376 LLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQI 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+D+G   LR+FKNL++LEICGGGLTDAGVK+IK L+
Sbjct: 436 TDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLA 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SLTLLNLSQNCNLTDKTLE+ISGLT LVSLNVSNSRIT+ GL+HLKPLKNL SL+LESCK
Sbjct: 496 SLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCK 555

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           VTA++I++LQS  LPNLVSFRPE
Sbjct: 556 VTASEIRKLQSTALPNLVSFRPE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519276|ref|XP_003528299.1| PREDICTED: F-box/LRR-repeat protein 14-like isoform 1 [Glycine max]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/502 (79%), Positives = 439/502 (87%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQ IFN LVYSR LT  SLEAFRDCALQDL LG+Y GVND WM VI+SQGSSLL
Sbjct: 75  MLPRDISQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMGVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGSDVTD GL +LKDC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSGSDVTDFGLTYLKDCESLISLNLNYCDQISDRGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+GL+NLVKLDLERC  IHGGLV+L+GL KLESLN+KWCNCITD DMKPLS L 
Sbjct: 195 AQGMSAFSGLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDYDMKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +LKSL+IS SKVTD GI++LKGLQKL LLNLEGC VTAACLDSL+ L +L  LNLNRC L
Sbjct: 255 SLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+K S++ +LKVLNLGFN ITD CLVHLKGLT LESLNLDSC IGDEGLVNL GL 
Sbjct: 315 SDNGCKKISRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGLE 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VGS+GL HLSGL++L+ INLSFT ISD SLRKL+GLSSLKSLNLDA QI
Sbjct: 375 QLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMISDSSLRKLSGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEICGG LTDAGVK+IK+LS
Sbjct: 435 TDAGLANLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGVLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SL  LNLSQN NLTDKTLELISGLTGLVSLNVSNSRIT+AGL+HLK LKNLRSLTLESCK
Sbjct: 495 SLVCLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRITNAGLQHLKTLKNLRSLTLESCK 554

Query: 481 VTANDIKRLQSRDLPNLVSFRP 502
           VTANDIK+L+S  LPNLVSFRP
Sbjct: 555 VTANDIKKLKSIYLPNLVSFRP 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458869|ref|XP_003599715.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355488763|gb|AES69966.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/511 (74%), Positives = 429/511 (83%), Gaps = 8/511 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA--------LGSLFY 232
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS         L +L  
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSGCHEHTIPKLPALSN 314

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           LNLNRC +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEG
Sbjct: 315 LNLNRCNISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEG 374

Query: 293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
           L NL G   L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKS
Sbjct: 375 LENLAGHKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKS 434

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           LNLDA QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAG
Sbjct: 435 LNLDAYQITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAG 494

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 472
           VK+IK+LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLR
Sbjct: 495 VKNIKELSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLR 554

Query: 473 SLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
           SLTLESCKVTANDIK+ +   LPNLVSFRPE
Sbjct: 555 SLTLESCKVTANDIKKFKLIHLPNLVSFRPE 585

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120462|ref|XP_002331054.1| predicted protein [Populus trichocarpa] gi|222872984|gb|EEF10115.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/503 (74%), Positives = 433/503 (86%), Gaps = 1/503 (0%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT  SLEAFRDCALQD+ LG+YPGV D WMDVI+SQGSSLL
Sbjct: 75  MLPRDLSQQIFNELVISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD+GL  LKDCSNLQ++  N+C  ISD GL+HL GL+N+TSLS +++ ++T
Sbjct: 135 SVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLKKSCSVT 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+ L+NL  LD+ERC+ IHGGLV+LKGL KLESLNI+ C CITD DMK +SGLT
Sbjct: 195 AEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLT 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLK LQIS + VTD G++YL+GLQKL +LNLEGC +T ACLDS+SAL +L YLNLNRC L
Sbjct: 255 NLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGCNITTACLDSISALATLAYLNLNRCHL 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
            DDGC+KFS + +LKVL+L FN++TD CLVHLKGL NLESLNLDSC IGDEG+ NL GL 
Sbjct: 315 PDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGL- 373

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT VGSSGLRHLSG+ +LE++NLSFT ++DG LRKL+GL+SL+SLNLDARQI
Sbjct: 374 PLKSLELSDTIVGSSGLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQI 433

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL ALTSLTGLT LDLFGARITDSG   L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 434 TDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKNIKDLV 493

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
            LT+LNLSQN NLTDKTLELISGLT LVSLNVSNS IT+ GLR+LKPLKNLR+LTLESCK
Sbjct: 494 HLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCK 553

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           VTA++IK+LQS +LPNL S RPE
Sbjct: 554 VTASEIKKLQSTELPNLASVRPE 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407840|gb|ACB87911.1| F-box-containing protein 1 [Malus x domestica]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/503 (74%), Positives = 446/503 (88%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRD+SQQIFNELV S  LT+VSLEAFRDCAL+D+ LG+YP V D WM VI+SQGSSLL
Sbjct: 78  MLPRDVSQQIFNELVCSNSLTDVSLEAFRDCALEDIGLGEYPDVKDSWMGVISSQGSSLL 137

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLSGS+VTDSGL  LK CSNLQ+L +N+C  +S+ GL+H+ GLSNLTSLSF+R++AI+
Sbjct: 138 SVDLSGSEVTDSGLALLKGCSNLQALAYNYCDHVSEQGLKHISGLSNLTSLSFKRSDAIS 197

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           A+GM+AF+GL+NL KLDLERC+ IHGG V+LKGL KL+SLN++ C CITDSD+K +SGL 
Sbjct: 198 AEGMRAFSGLLNLEKLDLERCSAIHGGFVHLKGLKKLKSLNVRCCRCITDSDLKTISGLI 257

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L  LQ+S   +TDSGI+YLKGL KL +LNLEGC VTA+CL S+SAL +L YLNLNRC L
Sbjct: 258 DLNELQLSNCNITDSGISYLKGLHKLRMLNLEGCNVTASCLQSISALVALAYLNLNRCSL 317

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD+GC+KFS + +LKVL+LGFNEITD CL++LKGLT+LESLNLDSC IGDEGL NL GL 
Sbjct: 318 SDEGCDKFSGLTNLKVLSLGFNEITDACLMYLKGLTSLESLNLDSCKIGDEGLANLAGLT 377

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           +LK LELSDT+VGS+GLRHLSGL NLES+NLSFT ++D SL++L+GL+SLKSLNLDARQI
Sbjct: 378 HLKNLELSDTEVGSNGLRHLSGLKNLESLNLSFTLVTDSSLKRLSGLTSLKSLNLDARQI 437

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLAA+TSLTGLTHLDLFGARI+DSGA +L+ FKNL+SLEICGGGLTDAGVK+IKDL 
Sbjct: 438 TDAGLAAITSLTGLTHLDLFGARISDSGANHLKYFKNLQSLEICGGGLTDAGVKNIKDLV 497

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
            LT LN+SQNCNLT+K+LELISGLT LVSLNVSNSRIT+ GL+HLKPLKNLRSLTLESCK
Sbjct: 498 CLTWLNISQNCNLTNKSLELISGLTALVSLNVSNSRITNEGLQHLKPLKNLRSLTLESCK 557

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           VTA++I++LQS  LPNLVSFRPE
Sbjct: 558 VTASEIRKLQSDALPNLVSFRPE 580

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500850|gb|AFK38491.1| unknown [Medicago truncatula]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/503 (75%), Positives = 424/503 (84%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAIT 120
           SVDLS SDVTD GL +L+DC +L SL+ N+C QISD GLE + GLSNLTSLSFRRN++I+
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDQISDHGLECISGLSNLTSLSFRRNDSIS 194

Query: 121 AQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT 180
           AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS L 
Sbjct: 195 AQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSELA 254

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC +
Sbjct: 255 SLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRCNI 314

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           S  GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G  
Sbjct: 315 SGRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAGHK 374

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA QI
Sbjct: 375 QLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAYQI 434

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLR LEIC GGLTDAGVK+IK+LS
Sbjct: 435 TDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRPLEICSGGLTDAGVKNIKELS 494

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RIT AGL+HLK LKNLR LTLESCK
Sbjct: 495 SLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITFAGLQHLKTLKNLRFLTLESCK 554

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           VT NDIK+ +   LPNLVSFRPE
Sbjct: 555 VTVNDIKKFKLIHLPNLVSFRPE 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844484|ref|XP_002890123.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297335965|gb|EFH66382.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/503 (77%), Positives = 450/503 (89%), Gaps = 1/503 (0%)

Query: 2   LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDLCLG+YPGVND WMDVI+SQ +SLLS
Sbjct: 76  LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLCLGEYPGVNDDWMDVISSQSTSLLS 135

Query: 62  VDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
           VD SGSD+TDSGL+ LK C+NL+SL+FNFC QIS+ GLEHL GLSNLTSLSFRRN AITA
Sbjct: 136 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLEHLSGLSNLTSLSFRRNAAITA 195

Query: 122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
           QGM+A + L+N+ KLDLE+C  IHGGLV+L+GL KLESLNIKWCNCITD+DM+PLS LTN
Sbjct: 196 QGMRALSNLVNMKKLDLEKCPGIHGGLVHLRGLTKLESLNIKWCNCITDADMEPLSELTN 255

Query: 182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC-PVTAACLDSLSALGSLFYLNLNRCQL 240
           L+SLQI CS++TD GI+YLKGL KL LLNLEGC  VTAACLD+L+AL  L +LNLNRC  
Sbjct: 256 LRSLQICCSRITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALTGLMFLNLNRCNF 315

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
           SD GCEKFS + +LK+LNLG N IT+ CLVHL+GLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct: 316 SDSGCEKFSDLINLKILNLGMNSITNSCLVHLRGLTKLESLNLDSCRIGDEGLVHLSGML 375

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct: 376 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 435

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
           TD GL+ALTSLTGLTHLDLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKDLS
Sbjct: 436 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 495

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SLTLLNLSQN NLTDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct: 496 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 555

Query: 481 VTANDIKRLQSRDLPNLVSFRPE 503
           ++ANDI++LQ+ DLPNLV+FRPE
Sbjct: 556 LSANDIRKLQATDLPNLVNFRPE 578

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468127|ref|XP_003604348.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355505403|gb|AES86545.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/505 (74%), Positives = 423/505 (83%), Gaps = 8/505 (1%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           MLPRDISQQI N LVYSR LT  SLEAFRDCALQDL LG+Y GV+D WMDVI+SQGSSLL
Sbjct: 75  MLPRDISQQILNNLVYSRRLTGDSLEAFRDCALQDLYLGEYAGVDDSWMDVISSQGSSLL 134

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFC--IQISDGGLEHLRGLSNLTSLSFRRNNA 118
           SVDLS SDVTD GL +L+DC +L SL+ N+C   QI D  L      SNLTSLSFRRN++
Sbjct: 135 SVDLSASDVTDFGLTYLQDCRSLISLNLNYCDKFQIMDWSL------SNLTSLSFRRNDS 188

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           I+AQGM AF+ L+NLVKLDLERC  IHGG V+L+GL KLESLN+KWCNCITDSD+KPLS 
Sbjct: 189 ISAQGMSAFSRLVNLVKLDLERCPGIHGGTVHLQGLTKLESLNMKWCNCITDSDIKPLSE 248

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           L +L SL+ISCSKVTD GI++L+GLQKL LLNLEGC VT+ACLDSLS L +L  LNLNRC
Sbjct: 249 LASLTSLEISCSKVTDFGISFLRGLQKLALLNLEGCLVTSACLDSLSELPALSNLNLNRC 308

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            +SD GCE+FS++  LKVLNLGFN+I D CL H+KGLT LESLNLDSC IGDEGL NL G
Sbjct: 309 NISDRGCERFSRLEKLKVLNLGFNDIGDRCLAHMKGLTKLESLNLDSCKIGDEGLENLAG 368

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L CLELSDT+VG+ GL HLSGL++LE INLSFT +SD  LRKL GLSSLKSLNLDA 
Sbjct: 369 HKQLICLELSDTEVGNHGLEHLSGLSSLEKINLSFTVVSDSGLRKLCGLSSLKSLNLDAY 428

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QITD GLA LTSLTGLT LDLFGARITD G  YL+ FKNLRSLEIC GGLTDAGVK+IK+
Sbjct: 429 QITDAGLATLTSLTGLTDLDLFGARITDVGTNYLKKFKNLRSLEICSGGLTDAGVKNIKE 488

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           LSSL  LNLSQN NLTDKT+ELI+GLT LVSLN+SN+RITSAGL+HLK LKNLRSLTLES
Sbjct: 489 LSSLMCLNLSQNSNLTDKTVELIAGLTALVSLNLSNTRITSAGLQHLKTLKNLRSLTLES 548

Query: 479 CKVTANDIKRLQSRDLPNLVSFRPE 503
           CKVTANDIK+ +   LPNLVSFRPE
Sbjct: 549 CKVTANDIKKFKLIHLPNLVSFRPE 573

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.998	0.858	0.669	8.6e-175
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.775	0.653	0.268	2.2e-19
DICTYBASE|DDB_G0291424	902	DDB_G0291424 "Transcription fa	0.596	0.332	0.280	5.2e-18
UNIPROTKB|F1NMM1	345	FBXL14 "Uncharacterized protei	0.572	0.834	0.308	5.3e-17
FB|FBgn0020257	538	ppa "partner of paired" [Droso	0.502	0.470	0.308	2.1e-16
TAIR|locus:2143320	642	AT5G27920 "AT5G27920" [Arabido	0.773	0.605	0.294	2.4e-16
ZFIN|ZDB-GENE-030131-3556	400	fbxl14b "F-box and leucine-ric	0.469	0.59	0.314	5.3e-16
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.514	0.630	0.297	1.3e-15
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.429	0.54	0.294	3.8e-14
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.429	0.54	0.294	3.8e-14

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
 Identities = 337/503 (66%), Positives = 389/503 (77%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQXXXXXX 61
             LPRDISQQIF+ELVYS+ LT  SLEAFRDCA+QDL LG+YPGVND WMDVI+SQ      
Sbjct:    83 LPRDISQQIFDELVYSQRLTLKSLEAFRDCAIQDLYLGEYPGVNDDWMDVISSQSTSLLS 142

Query:    62 XXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 121
                          + LK C+NL+SL+FNFC QIS+ GL HL GLSNLTSLSFRRN AITA
Sbjct:   143 VDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITA 202

Query:   122 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 181
             QGM+A + L+NL KLDLE+C  I GGLV+L+ L KLESLNIKWCNCITD+DM+PLS LTN
Sbjct:   203 QGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTN 262

Query:   182 LKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCP-VTAACLDSLSALGSLFYLNLNRCQL 240
             L+SLQI CSK+TD GI+Y            EGC  VTAACLD+L+AL  L YLNLNRC  
Sbjct:   263 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 322

Query:   241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
             SD GCEKFS + +LK+LNLG N IT+ CLVHLKGLT LESLNLDSC IGDEGLV+L+G+ 
Sbjct:   323 SDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGML 382

Query:   301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
              LK LELSDT+VGS+GLRHLSGL+NLESINLSFT ++D  LRKL+GL+SL++LNLDAR +
Sbjct:   383 ELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHV 442

Query:   361 XXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDXX 420
                              DLFGARITDSG  +LRN K L+SLEICGGGLTD GVK+IKD  
Sbjct:   443 TDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLS 502

Query:   421 XXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
                          TDKTLELISGLTGLVSLNVSNSR++S+GLRHLKPLKNLRSLTLESCK
Sbjct:   503 SLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCK 562

Query:   481 VTANDIKRLQSRDLPNLVSFRPE 503
             ++ANDI++LQ+ DLPNLV+FRPE
Sbjct:   563 LSANDIRKLQATDLPNLVNFRPE 585

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 118/439 (26%), Positives = 188/439 (42%)

Query:    82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC 141
             NL +L+ + C +I+   L  + GL++LT L   R   +T  GMK    ++NL KL + + 
Sbjct:    87 NLITLNLSDCQRINSSTLWPITGLTSLTELDLSRCFKVTDAGMKHLQSVVNLKKLWISQT 146

Query:   142 TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXX 201
                  G+  L  L KL  L++     +TD ++  L  LT L+ L I  S VT+ G     
Sbjct:   147 GVTEVGISLLASLKKLSLLDLGGLP-VTDQNLISLQALTKLEYLDIWGSNVTNQGAVSIL 205

Query:   202 XXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG- 260
                           +T         +  L  L++N C +  +  +  S + SLK L L  
Sbjct:   206 KFSNLSFLNLSWTSITQT-----PNIPHLECLHMNTCTIVSEP-KTHSSLASLKKLVLSG 259

Query:   261 --FNEITDE-------CLVHL-------KGLT------NLESLNLDSCGIGDE--GLVNL 296
               F+  T+        C+ +L       K  +      NLE L+L S   GD+  G V  
Sbjct:   260 ANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEHLDLSSTAFGDDSVGFVAC 319

Query:   297 TGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFTGISDGSLRKLAG-LSSLKSLN 354
              G  NLK L +SDTQ+  SG+ +L+G +  LE++++S T + D S+  ++  +  +K+L+
Sbjct:   320 VGE-NLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDDLSILLISTTMPCIKALD 378

Query:   355 LDARQIXXXXXXXXXXXXXXXXXDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 414
             L                              +   A L++  +L +L +    L D  + 
Sbjct:   379 LGMNSTLGFYYLISPQEEK------------EKSLAALQSLTSLETLSLEHPYLGDKALS 426

Query:   415 HIKDXXXXXXXXXXXXXXXTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
              +                 TD TL  +S L  LVSL V +  +TS GL   +P   LR+L
Sbjct:   427 GLSSLTGLTHLSLTSTSL-TDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNRLRTL 485

Query:   475 TLESC-KVTANDIKRLQSR 492
              L+ C  +T +DI  L  R
Sbjct:   486 DLQGCWLLTKDDIAGLCKR 504

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 5.2e-18, P = 5.2e-18
 Identities = 89/317 (28%), Positives = 136/317 (42%)

Query:     2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCL-GQYPGVNDKWMDVIAS--QXXX 58
             LP ++ Q+I       + L+  +L  FR+C L  L L G+   +ND+W+++     +   
Sbjct:   381 LPDELCQKIIPLFQRRKILSLKTLSLFRNCKLSRLELYGKEIAINDEWLNITKGLMKSTL 440

Query:    59 XXXXXXXXXXXXXXXXIHLKDCSNLQSLDFNFCIQISDGGLEHL--RGLSNLTSLSFRRN 116
                               L   + L SLD ++C +I   GLE L   G+  L  L    N
Sbjct:   441 SSINISKNNSLTDQGIASLSSLAKLSSLDISYCEKIDGTGLEPLVDAGVP-LQKLHMEGN 499

Query:   117 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVN-LKGLMKLESLNIKWCNCITDSD 172
             +++    +K F  L  L  L+   C   T I   +   L  L  L  L++     + +  
Sbjct:   500 SSLNL--VKVFNSLSKLKTLN-SLCVGNTNITDDMCKPLSLLTTLTHLDVARNTQLGNQG 556

Query:   173 MKPLSGLTNLKSLQISC-SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLF 231
             ++ +S   NL  L ISC +K+   GI +            E C +    +  +  L SL 
Sbjct:   557 LESISKCVNLIDLDISCCTKINALGIRHLGSLSNLQSLSAENCAIDDESMKYIGTLKSLS 616

Query:   232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNLDSCG-IG 289
              L+L     SD G +    +  L  L+L     ITD  LVH K LT +  LNL+ CG + 
Sbjct:   617 SLSLINNPFSDTGAKNIGNLTLLTTLDLSMCANITDAALVHFKNLTQISKLNLNFCGNLT 676

Query:   290 DEGLVNLTG-LCNLKCL 305
             D G+ +LTG L  LK L
Sbjct:   677 DSGVTSLTGGLGQLKTL 693

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 229 (85.7 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 100/324 (30%), Positives = 155/324 (47%)

Query:   102 LRGLSNLTSLSFRRNNAITAQGM-KAF-AGLINLVKLDLERCTRI-HGGLVNLKGLMK-L 157
             ++G++++ SL+      +T  G+  AF A + +L  L+L  C +I    L  +   +K L
Sbjct:    19 IQGMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLCKQITDSSLGRIAQYLKGL 78

Query:   158 ESLNIKWCNCITDSDMKPLS-GLTNLKSLQI-SCSKVTDSGIAYXXXXXXXXXXXXEGCP 215
             E L +  C+ IT++ +  ++ GL  LKSL + SC  ++D GI +            EGC 
Sbjct:    79 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA---EGC- 134

Query:   216 VTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEITDECLVHL 272
                        LG L  L L  CQ LSD   +  ++ +G L+ LNL F   I+D  L+HL
Sbjct:   135 -----------LG-LEQLTLQDCQKLSDLSIKHLARGLGRLRQLNLSFCGGISDAGLLHL 182

Query:   273 KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS-GLTNLES 328
               +++L SLNL SC  I D G+++L  G   L  L++S   +VG   L +++ GL  L S
Sbjct:   183 SHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLRS 242

Query:   329 INLSFTGISD-GSLRKLAGLSSLKSLNLD--ARQIXXXXXXXXXXXXXXXXXDLFGA-RI 384
             ++L    ISD G  R +  +  L++LN+    R                   DL+G  RI
Sbjct:   243 LSLCSCHISDEGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRI 302

Query:   385 TDSGAAYLRNFKNLRSLEICGGGL 408
             T  G   L     L  L++   GL
Sbjct:   303 TKRG---LERITQLPCLKVLNLGL 323

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

FB|FBgn0020257 ppa "partner of paired" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 92/298 (30%), Positives = 150/298 (50%)

Query:    79 DCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKL 136
             D  NL++LD + C QI+D  L  + + L NL +L       IT  G+   A GL  L  L
Sbjct:   259 DLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLLLIAWGLKKLKHL 318

Query:   137 DLERCTRIHG-GLVNLKGL--------MKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQ 186
             +L  C  I   G+ +L G         ++LE L ++ C  ++D  +  ++ GLT+LKS+ 
Sbjct:   319 NLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGLTSLKSIN 378

Query:   187 IS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDG 244
             +S C  VTDSG+ +                        L+ +  L  LNL  C  +SD G
Sbjct:   379 LSFCVSVTDSGLKH------------------------LARMPKLEQLNLRSCDNISDIG 414

Query:   245 CEKFSKIGS-LKVLNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT-GLC 300
                 ++ GS +  L++ F ++I+D+ L H+ +GL  L SL+L+ C I D G++ +   L 
Sbjct:   415 MAYLTEGGSGINSLDVSFCDKISDQALTHIAQGLYRLRSLSLNQCQITDHGMLKIAKALH 474

Query:   301 NLKCLELSD-TQVGSSGLRHLS-GLTNLESINL-SFTGISDGSLRKLAGLSSLKSLNL 355
              L+ L +   +++   GL+ L+  LTNL++I+L   T +S   +  +  L  L+ LNL
Sbjct:   475 ELENLNIGQCSRITDKGLQTLAEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNL 532

GO:0000152 "nuclear ubiquitin ligase complex" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 133/451 (29%), Positives = 210/451 (46%)

Query:    80 CSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
             CSNL  +   +C++ISD G++ L    +GL +L  +S+ +   IT   +++ A L+ L  
Sbjct:   171 CSNLNKISLKWCMEISDLGIDLLCKICKGLKSL-DVSYLK---ITNDSIRSIALLVKLEV 226

Query:   136 LDLERCTRIH-GGLVNLK-GLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-C-S 190
             LD+  C  I  GGL  L+ G   L+ +++  C+ ++ S +  +  G  +++ L+ S C S
Sbjct:   227 LDMVSCPLIDDGGLQFLENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVS 286

Query:   191 KVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSA-LGSLFYLNLNRC-QLSDDGCEKF 248
             +V+ S + Y            +G  V+ + L SLS+   SL  + L+RC  ++D G    
Sbjct:   287 EVSGSFLKYIKGLKHLKTIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISL 346

Query:   249 SK-IGSLKVLNL---GFNEITDECLVHL-KGLTNLESLNLDSCG-IGDEGLVNLTGLCNL 302
             ++   +LK LNL   GF  +TD  +  + +   NL +L L+SC  I ++GL +L     L
Sbjct:   347 ARNCLNLKTLNLACCGF--VTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSML 404

Query:   303 -KCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQ 359
              + L+L+D   V   GL ++S  +NL+ + L   T ISD  +  +    S K L LD  +
Sbjct:   405 VQELDLTDCYGVNDRGLEYISKCSNLQRLKLGLCTNISDKGIFHIGSKCS-KLLELDLYR 463

Query:   360 IXXXXXXXXXXXXXXXXXDLFGARITDSGAAYL-RNFKNLRSLEI--CGGGLTDAGVKHI 416
                                 FG    D G A L R  K+L  L +  C   LTD GV+ I
Sbjct:   464 CAG-----------------FG----DDGLAALSRGCKSLNRLILSYCCE-LTDTGVEQI 501

Query:   417 KDXXXXXXXXXXXXXXXTDKTLELI-SGLTGLVSLNVSN-SRITSAGLRHLKPL-KNLRS 473
             +                T   L  I SG   L  L+V     I  +G   L    KNLR 
Sbjct:   502 RQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDDSGFWALAYFSKNLRQ 561

Query:   474 LTLESCKV--TA-----NDIKRLQSRDLPNL 497
             + L +C V  TA     +++ R+Q  DL +L
Sbjct:   562 INLCNCSVSDTALCMLMSNLSRVQDVDLVHL 592

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 83/264 (31%), Positives = 133/264 (50%)

Query:   103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI--HG-GLVNLKGLMKLES 159
             RG+  +  LS RR+ +   QGM       N+  L+L  C  +  +G G   ++ +  L  
Sbjct:    68 RGIRRVQILSLRRSLSYVIQGMP------NIESLNLSGCYNLTDNGLGHAFVQEIPSLRV 121

Query:   160 LNIKWCNCITDSDMKPLSG-LTNLKSLQIS-CSKVTDSGIAYXX-XXXXXXXXXXEGCP- 215
             LN+  C  ITDS +  ++  L NL+ L++  CS +T++G+                 C  
Sbjct:   122 LNLSLCKQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRH 181

Query:   216 VTAACLDSLSAL------G--SLFYLNLNRCQ-LSDDGCEKFSK-IGSLKVLNLGF-NEI 264
             V+   +  L+ +      G  SL YL L  CQ L+D   +  SK +  LKVLNL F   I
Sbjct:   182 VSDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGI 241

Query:   265 TDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDT-QVGSSGLRHLS 321
             +D  ++HL  +T+L SLNL SC  I D G+++L  G   L  L++S   ++G   L +++
Sbjct:   242 SDAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYIA 301

Query:   322 -GLTNLESINLSFTGISDGSLRKL 344
              GL  L+S++L    ISD  + ++
Sbjct:   302 QGLYQLKSLSLCSCHISDDGINRM 325

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IC

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 91/306 (29%), Positives = 151/306 (49%)

Query:    77 LKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLV 134
             ++D  +L+ L+ + C QI+D  L  + + L NL  L     + IT  G+   A GL NL 
Sbjct:   113 VQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLK 172

Query:   135 KLDLERCTRIHG-GLVNLKGLMK--------LESLNIKWCNCITDSDMKPLS-GLTNLKS 184
              L+L  C  +   G+ +L G+ +        LE L ++ C  +TD  +K +S GL  LK 
Sbjct:   173 SLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKV 232

Query:   185 LQIS-CSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSD 242
             L +S C  ++D+G+ +                        LS +  L+ LNL  C  +SD
Sbjct:   233 LNLSFCGGISDAGMIH------------------------LSHMTQLWTLNLRSCDNISD 268

Query:   243 DGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTG 298
              G    S +G+L++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+  +  
Sbjct:   269 TGIMHLS-MGALRLYGLDVSFCDKVGDQSLAYIAQGLYQLKSLSLCSCHISDDGINRMVR 327

Query:   299 -LCNLKCLELSD-TQVGSSGLRHLSG-LTNLESINL-SFTGISDGSLRKLAGLSSLKSLN 354
              +  LK L +    ++   GL  ++  LT L  I+L   T I+   L ++  L  LK LN
Sbjct:   328 QMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLN 387

Query:   355 LDARQI 360
             L   Q+
Sbjct:   388 LGLWQM 393

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 70/238 (29%), Positives = 127/238 (53%)

Query:    77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
             ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
               L+L  C+ I + GL+ +  GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query:   184 SLQIS-CSKVTDSGIAYXXXXXXXXXXXXEG-CP-VTAACLDSLSALGSLFYLNLNRCQ- 239
              L +  C K+TD  + +               C  ++ A L  LS +GSL  LNL  C  
Sbjct:   206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query:   240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
             +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+
Sbjct:   266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 70/238 (29%), Positives = 127/238 (53%)

Query:    77 LKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFRRNNAITAQGMKAFAGLIN-L 133
             ++  +N++SL+ + C  ++D GL H  ++ + +L +L+      IT   +   A  +  L
Sbjct:    86 IQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGL 145

Query:   134 VKLDLERCTRI-HGGLVNLK-GLMKLESLNIKWCNCITDSDMKPLSGLTN--------LK 183
               L+L  C+ I + GL+ +  GL +L+SLN++ C  ++D  +  L+G+T         L+
Sbjct:   146 EVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLE 205

Query:   184 SLQIS-CSKVTDSGIAYXXXXXXXXXXXXEG-CP-VTAACLDSLSALGSLFYLNLNRCQ- 239
              L +  C K+TD  + +               C  ++ A L  LS +GSL  LNL  C  
Sbjct:   206 QLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDN 265

Query:   240 LSDDGCEKFSKIGSLKV--LNLGF-NEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
             +SD G    + +GSL++  L++ F +++ D+ L ++ +GL  L+SL+L SC I D+G+
Sbjct:   266 ISDTGIMHLA-MGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISDDGI 322

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	503
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-05
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 68/252 (26%), Positives = 100/252 (39%), Gaps = 46/252 (18%)

Query: 206 LTLLNLEGCP-VTAACLDSLSALGSLFYLNLNRCQLSDDGC---EKFSKIGSLKVLNLGF 261
           L+L      P    + L  L+    L  L+L+   L  DGC   E   +  SL+ L L  
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 262 NEITDECLVHL-KGLT----NLESLNLDSCGIGDEGLVNLTGL----CNLKCLELSDTQV 312
           N + D  L  L KGL      LE L L    +       L        +LK L L++  +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT--- 369
           G +G+R L                       L    +L+ L+L+   +TD G +AL    
Sbjct: 178 GDAGIRAL--------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 370 -SLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICGGGLTDAGVKH----IKDL 419
            SL  L  L+L    +TD+GAA L +       +L +L +    +TD G K     + + 
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

Query: 420 SSLTLLNLSQNC 431
            SL  L+L  N 
Sbjct: 278 ESLLELDLRGNK 289

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 62/235 (26%), Positives = 105/235 (44%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P   + NL++L +S + ++      +     L +L+L G  +     +SL+ L SL +L 
Sbjct: 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   QL      +  ++ SLK + LG+N ++ E    + GLT+L  L+L    +      
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLN 354
           +L  L NL+ L L   ++       +  L  L S++LS   +S      +  L +L+ L+
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 355 LDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L +   T     ALTSL  L  L L+  + +      L    NL  L++    LT
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           SL YLNL+    +  G      I +L+ L+L  N ++ E    +   ++L+ L+L    +
Sbjct: 119 SLRYLNLSNNNFT--GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 348
             +   +LT L +L+ L L+  Q+     R L  + +L+ I L +  +S     ++ GL+
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 408
           SL  L+L    +T    ++L +L  L +L L+  +++      + + + L SL++    L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 468
           +    + +  L +L +L+L  N N T K    ++ L  L  L + +++ +    ++L   
Sbjct: 297 SGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 469 KNLRSLTLESCKVT 482
            NL  L L +  +T
Sbjct: 356 NNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINL-SFTGISDGSLRKLA-GLSSLKSLNLDA- 357
            L+ LEL    +    L  LS    L+ + L     I D  L  LA    +L+ L+L A 
Sbjct: 29  GLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88

Query: 358 RQITDTGLAAL-TSLTGLTHLDL----FGARITDSGAAYL-RNFKNLRSLEICGGGLTDA 411
             ITD+G+ AL T+   L  ++L     G  ITD   + L +N   L+++   G  +TD 
Sbjct: 89  ENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDK 148

Query: 412 GVKHIKDLSSLTLLNLSQN-C-NLTDKTLELISGLTGLVSLNV 452
           GV  +    S +L  LS N C NLTD+++  I       +L+V
Sbjct: 149 GVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 80/355 (22%), Positives = 146/355 (41%), Gaps = 33/355 (9%)

Query: 105 LSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           L NL +L   F   N ++     +   L  L+ LDL     + G +  L  +++L++L I
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPEL--VIQLQNLEI 312

Query: 163 K--WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
              + N  T      L+ L  L+ LQ+  +K +      L     LT+L+L    +T   
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 221 LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
            + L + G+LF L L    L  +  +      SL+ + L  N  + E       L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           L++ +         NL G  N +  ++                 +L+ ++L+      G 
Sbjct: 433 LDISNN--------NLQGRINSRKWDM----------------PSLQMLSLARNKFF-GG 467

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 400
           L    G   L++L+L   Q +      L SL+ L  L L   +++      L + K L S
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 455
           L++    L+        ++  L+ L+LSQN  L+ +  + +  +  LV +N+S++
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQN-QLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 190 SKVTDSGIAYLKGL--QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
            ++T S I+ L  +    L  L L  CP++   LD LS    L  L L   +L       
Sbjct: 12  GQITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKL------- 64

Query: 248 FSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC-NLKC 304
                           I DE L+ L +   NL+ L+L +C  I D G+V L   C  L+ 
Sbjct: 65  ----------------IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQT 108

Query: 305 LELSDTQVGSS----GLRHLSGL-TNLESINLSFTGISDGSLRKLAGLSS--LKSLNLD- 356
           + L   + G       L  L    T L+++  +   ++D  + +LA   S  L+ L+L+ 
Sbjct: 109 INLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNN 168

Query: 357 ARQITDTGLAALTSLTGLTHLDLF----GARITD 386
            R +TD  + A+ +     +L +        ITD
Sbjct: 169 CRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 36/254 (14%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKCLELSDTQVGS---------SGL 317
            L  L  L+ L L+   +G+E        L    +LK L LS  + G           GL
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA----ALTSLT- 372
               GL  L+  + +      G L  L   SSL+ L L+   + D GL      L  L  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 373 GLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTL 424
            L  L L   R+  +     A  LR  ++L+ L +   G+ DAG++ +    K   +L +
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 425 LNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRSLT 475
           L+L  N  LTD+      E ++ L  L  LN+ ++ +T AG   L      P  +L +L+
Sbjct: 198 LDL-NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 476 LESCKVTANDIKRL 489
           L    +T +  K L
Sbjct: 257 LSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 43/219 (19%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL---INLVKLDLERCTRIHGGLVNL-KGL 154
           L+ L     L  L    +NA+   G      L    +L +L L        GL  L KGL
Sbjct: 74  LQGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 155 ----MKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKL 206
                 LE L +   N +  +  + L+       +LK L ++ + + D+GI  L      
Sbjct: 133 KDLPPALEKL-VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA----- 186

Query: 207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFN 262
                          + L A  +L  L+LN   L+D+G     E  + + SL+VLNLG N
Sbjct: 187 ---------------EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 263 EITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNL 296
            +TD     L         +L +L+L    I D+G  +L
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 168 ITDSDMKPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSL 224
           IT S++  L  +  + L+ L++    ++D  +  L    KL  L L G   +    L +L
Sbjct: 14  ITQSNISQLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIAL 73

Query: 225 -SALGSLFYLNLNRC-QLSDDG-------CEKFSKIGSLKVLNLGFNE----ITDECLVH 271
             +  +L  L+L  C  ++D G       C K      L+ +NLG +     ITD  L  
Sbjct: 74  AQSCPNLQVLDLRACENITDSGIVALATNCPK------LQTINLGRHRNGHLITDVSLSA 127

Query: 272 L-KGLTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELS 308
           L K  T L+++    C + D+G+  L   C  +L+ L L+
Sbjct: 128 LGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLN 167

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 31/207 (14%)

Query: 302 LKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR----KLAGLSSLKSLNLDA 357
           LK   L   +        L  L  L+ + L    + + + +     L    SLK L L  
Sbjct: 5   LKGELLKTERAT----ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60

Query: 358 RQ------ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC---GGGL 408
            +         + L  LT   GL  LDL    +   G   L +     SL+       GL
Sbjct: 61  NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 409 TDAGVKHI----KDLS-SLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSRITS 459
            D G++ +    KDL  +L  L L +N  L   + E ++        L  LN++N+ I  
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGD 179

Query: 460 AGLRHLKP----LKNLRSLTLESCKVT 482
           AG+R L        NL  L L +  +T
Sbjct: 180 AGIRALAEGLKANCNLEVLDLNNNGLT 206

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 43  GVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLE 100
            + D  +  +    + L +V  +G DVTD G+  L      +L+ L  N C  ++D  + 
Sbjct: 119 LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIP 178

Query: 101 HLRGLS---NLTSLSFRRNNAIT 120
            +   +   NL+ L FR    IT
Sbjct: 179 AILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
           NL+SL++    LT       K L +L +L+LS N NLT  + E  SGL  L SL++S + 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 457 I 457
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.58
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
KOG4341	483	consensus F-box protein containing LRR [General fu	99.46
KOG4341	483	consensus F-box protein containing LRR [General fu	99.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.45
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.29
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.15
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
PLN03150	623	hypothetical protein; Provisional	98.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.49
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.46
PLN03150	623	hypothetical protein; Provisional	98.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
PRK15386	426	type III secretion protein GogB; Provisional	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
PRK15386	426	type III secretion protein GogB; Provisional	96.6
KOG4308	478	consensus LRR-containing protein [Function unknown	96.36
KOG4308	478	consensus LRR-containing protein [Function unknown	96.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.62
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.01
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.1
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.57
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.68
smart00370	26	LRR Leucine-rich repeats, outliers.	88.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-43  Score=374.92  Aligned_cols=443  Identities=21%  Similarity=0.221  Sum_probs=242.9

Q ss_pred             cCCCeeEEEccCCCCChhhhhhc-cCCCCCCEEecCCCe---------------------ecChhhHHHhhCCCCCCEEE
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCI---------------------QISDGGLEHLRGLSNLTSLS  112 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~---------------------~~~~~~~~~~~~~~~L~~L~  112 (503)
                      ..++|+.|+++++.+.+..+..+ ..+++|++|++++|.                     .+....+..++.+++|++|+
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            46777777777776665555443 366666666666542                     12222334444555555555


Q ss_pred             cCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccC
Q 010711          113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV  192 (503)
Q Consensus       113 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  192 (503)
                      +++|. +....|..+.++++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|++|+++++.+
T Consensus       171 L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        171 LGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCcee
Confidence            55553 233344455555555555555544333344445555555555555433 2223344455555555555555555


Q ss_pred             CchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHh
Q 010711          193 TDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL  272 (503)
Q Consensus       193 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  272 (503)
                      .+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            54445555555556666665555544444455555566666666555555455555555666666666655555445555


Q ss_pred             hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711          273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  352 (503)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  352 (503)
                      ..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.+++.+|.+....+..+..+++|+.
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~  408 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR  408 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence            55666666666666555444555555556666666555544333333334444444444444444333444445555555


Q ss_pred             eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC-----------------------CCCCeEEecCCCCC
Q 010711          353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-----------------------KNLRSLEICGGGLT  409 (503)
Q Consensus       353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~~~~~  409 (503)
                      |++++|.+++..+..+..+++|+.|++++|.+....+..+..+                       ++|+.|++++|.+.
T Consensus       409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~  488 (968)
T PLN00113        409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFS  488 (968)
T ss_pred             EECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccC
Confidence            5555555544444444445555555555544443333333333                       44555555555555


Q ss_pred             hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHH
Q 010711          410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL  489 (503)
Q Consensus       410 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  489 (503)
                      +..+..+..+++|+.|++++| .+....|..+.++++|+.|+|++|.++...+..+..+++|+.|++++|.++......+
T Consensus       489 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        489 GAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            555555666667777777776 5666566666677777777777777776666666777777777777777665444444


Q ss_pred             HhcCCCCcccccC
Q 010711          490 QSRDLPNLVSFRP  502 (503)
Q Consensus       490 ~~~~~~~L~~l~~  502 (503)
                      .  .+++|+.+.+
T Consensus       568 ~--~l~~L~~l~l  578 (968)
T PLN00113        568 G--NVESLVQVNI  578 (968)
T ss_pred             h--cCcccCEEec
Confidence            4  5566665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.4e-43  Score=371.33  Aligned_cols=423  Identities=19%  Similarity=0.194  Sum_probs=303.5

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .++|++|+++++.+.+..+..++.+++|++|++++| .+....+..+.++++|++|++++|. +....|..+.++++|++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccE
Confidence            445555556655555556666788888999999886 4555556778888888888888886 45566788888888888


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  215 (503)
                      |++++|......+..+.++++|++|++++|. +....+..+..+++|++|+++++.+.+..+..+..+++|+.|++++|.
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            8888876555666777888888888888754 344455667777788888887777766666666777777777777777


Q ss_pred             CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (503)
Q Consensus       216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  295 (503)
                      +....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            66555566666777777777777666656666666677777777766666555555666666666666666554443444


Q ss_pred             Hhc------------------------CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCC
Q 010711          296 LTG------------------------LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK  351 (503)
Q Consensus       296 l~~------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  351 (503)
                      +..                        +++|+.|++++|.+....+..+..++.|+.+++++|.+....+..+..+++|+
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            444                        44455555555444433334444555555555555555444444444556666


Q ss_pred             EeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       352 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      .|++++|.+.+..+..+ ..++|+.|++++|++....+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++| 
T Consensus       456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-  533 (968)
T PLN00113        456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN-  533 (968)
T ss_pred             EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC-
Confidence            66666665554333322 3467888888888887777788889999999999999999888889999999999999999 


Q ss_pred             CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711          432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      .++...+..+..+++|+.|++++|+++...|..+..+++|+.|++++|+++.
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            8888888999999999999999999998888889999999999999998764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-35  Score=266.84  Aligned_cols=389  Identities=23%  Similarity=0.295  Sum_probs=229.5

Q ss_pred             eeEEEccCCCCChhhhhhccC-C-CCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711           59 LLSVDLSGSDVTDSGLIHLKD-C-SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (503)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (503)
                      .+.|+.++..+....+..+.. + +.-+.|++++| .+..+.+..|.++++|+.+++..|..  ..+|.......+|+.|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKL  130 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEE
Confidence            456677766665433334422 2 34566777775 66666677777777777777777642  3345443344456666


Q ss_pred             eccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCC
Q 010711          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (503)
Q Consensus       137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  216 (503)
                      ++.++-+.+.....+.-++.||.||++.+ .+.......+..-.++++|++++|.++....+.                 
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-----------------  192 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGH-----------------  192 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccc-----------------
Confidence            66664333333344444555555555542 233233333333344445555444444444444                 


Q ss_pred             cHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHH
Q 010711          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL  296 (503)
Q Consensus       217 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l  296 (503)
                             |..+.+|..|.++.|.++...+..|.++++|+.|++..|.+.......|..+++|+.|.+..|.+......+|
T Consensus       193 -------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  193 -------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             -------ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence                   4444455555555555554444455555555555555554443333345555666666666555554444455


Q ss_pred             hcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCE
Q 010711          297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH  376 (503)
Q Consensus       297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  376 (503)
                      -.+.++++|++..|++......++-++++|+.|++++|.+....+..+..+++|+.|+++.|.++...+..|..+..|++
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~  345 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE  345 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence            55666666666666655554445556666666677666666666666666677777777777776666666666677777


Q ss_pred             EEccCCccChHHHHHHhcCCCCCeEEecCCCCCh---hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711          377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (503)
Q Consensus       377 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  453 (503)
                      |+++.|++.......|..+++|++|++++|.+..   +....|..+++|++|.+.+| ++..+.-.+|.++++|+.|+|.
T Consensus       346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCC
Confidence            7777777766666666667777777777765432   23445566777777777777 6777666777777777777777


Q ss_pred             cCccchhhHhhccCCcccceEEec
Q 010711          454 NSRITSAGLRHLKPLKNLRSLTLE  477 (503)
Q Consensus       454 ~~~~~~~~~~~l~~~~~L~~L~l~  477 (503)
                      +|.+-.+-+++|..+ .|++|.++
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhc
Confidence            777776666667666 66666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=265.36  Aligned_cols=361  Identities=23%  Similarity=0.249  Sum_probs=301.2

Q ss_pred             cEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711          134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  213 (503)
Q Consensus       134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  213 (503)
                      ++|+++++......+..+.++++|+.+++.++. ++. .|.......+|+.|++..|.++......+..++.|+.|+++.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccch-hhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            345555543333344555666666666666532 331 233333456788999998888877778888889999999999


Q ss_pred             CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHH
Q 010711          214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL  293 (503)
Q Consensus       214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  293 (503)
                      |.+.......+..-.++++|++.+|.++......|..+.+|.+|.++.|.++......|..+++|+.|+|..|++.....
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            98876655566666799999999999998888889999999999999999998778889999999999999998876666


Q ss_pred             HHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCC
Q 010711          294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG  373 (503)
Q Consensus       294 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  373 (503)
                      ..|.++++|+.+.+..|.+.....-.|-.+.++++|++..|++.......+.++..|+.|+++.|.+....++.+..+++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence            78899999999999999998877777888899999999999988776677778999999999999999888888889999


Q ss_pred             CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh---HHHHhcCCCCcEE
Q 010711          374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT---LELISGLTGLVSL  450 (503)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~l~~L~~L  450 (503)
                      |+.|++++|+++...+..|..+..|++|++++|.+.......|..+.+|++|++++| .++...   ...|.++++|+.|
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhhe
Confidence            999999999999999999999999999999999999888889999999999999999 666543   3467889999999


Q ss_pred             ecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccc
Q 010711          451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF  500 (503)
Q Consensus       451 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l  500 (503)
                      ++.+|++..+...+|..++.|++|++.+|.|..+....|.  .+ +|+.|
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe--~m-~Lk~L  444 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE--PM-ELKEL  444 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccc--cc-hhhhh
Confidence            9999999999999999999999999999998877766665  44 55544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-28  Score=233.92  Aligned_cols=414  Identities=22%  Similarity=0.228  Sum_probs=261.1

Q ss_pred             HHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhC
Q 010711           50 DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG  129 (503)
Q Consensus        50 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  129 (503)
                      +.+....+ |++|+++++.+. ..+..+...++|++|+++.| .+. ..+....++.+|+++.|.++..  ...|..+..
T Consensus        39 ~~~~~~v~-L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~-~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~  112 (1081)
T KOG0618|consen   39 EFVEKRVK-LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIR-SVPSSCSNMRNLQYLNLKNNRL--QSLPASISE  112 (1081)
T ss_pred             HHhhheee-eEEeeccccccc-cCCchhhhHHHHhhcccchh-hHh-hCchhhhhhhcchhheeccchh--hcCchhHHh
Confidence            33444344 888999988776 56666778888888888875 333 2346667888899999988753  567888888


Q ss_pred             CCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEE
Q 010711          130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  209 (503)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  209 (503)
                      +.+|++|+++.+ .....|..+..+..++.+..+++..+     ..++... ++.+++..+.+....+..+..+..  .+
T Consensus       113 lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~l  183 (1081)
T KOG0618|consen  113 LKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKI-----QRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QL  183 (1081)
T ss_pred             hhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhh-----hhhcccc-chhhhhhhhhcccchhcchhhhhe--ee
Confidence            889999998884 44455555555555555555554111     1111111 334444444333333333333333  34


Q ss_pred             EcCCCCCcHHHHHHhhC--------------------CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH
Q 010711          210 NLEGCPVTAACLDSLSA--------------------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL  269 (503)
Q Consensus       210 ~l~~~~~~~~~~~~l~~--------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  269 (503)
                      ++.+|.+...   .+..                    .++++.|...+|.+....  .-....+++.++++.+.++. .+
T Consensus       184 dLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~-lp  257 (1081)
T KOG0618|consen  184 DLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLSN-LP  257 (1081)
T ss_pred             ecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceeeecchhhhhc-ch
Confidence            4444433211   1111                    134444444444443111  11123456666666666553 33


Q ss_pred             HHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH-----
Q 010711          270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-----  344 (503)
Q Consensus       270 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----  344 (503)
                      .++..+.+|+.+....+.+.. .+..+....+|+.+.+..|.+... +...+....|++|++..|++.......+     
T Consensus       258 ~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             HHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            666666666666666665532 233333444455555444443322 2223344555555555554433221111     


Q ss_pred             --------------------hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          345 --------------------AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       345 --------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                                          ..++.|+.|++.+|.+++.....+.++.+|+.|++++|++...+...+.+++.|++|+++
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence                                124578889999999999888888899999999999999999999999999999999999


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  484 (503)
                      ||.++.. +..+..++.|++|...+| .+...+  .+.+++.|+.+|+++|.++.........-|+|++|+++||.-..-
T Consensus       416 GNkL~~L-p~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~  491 (1081)
T KOG0618|consen  416 GNKLTTL-PDTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF  491 (1081)
T ss_pred             cchhhhh-hHHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc
Confidence            9999886 477888999999999888 666644  788999999999999999987665444458999999999964333


Q ss_pred             HHHHHH
Q 010711          485 DIKRLQ  490 (503)
Q Consensus       485 ~~~~~~  490 (503)
                      ..+.+.
T Consensus       492 d~~~l~  497 (1081)
T KOG0618|consen  492 DHKTLK  497 (1081)
T ss_pred             chhhhH
Confidence            333333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=1.5e-29  Score=218.87  Aligned_cols=417  Identities=21%  Similarity=0.226  Sum_probs=258.1

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccc----------------
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAI----------------  119 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------  119 (503)
                      ...+++++++++.+. ..+.++++..+++.|+.+++ .+. ..++.+....+|+.++++.+...                
T Consensus        67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence            445566666665554 34455555555555555553 222 22444444445555554444321                


Q ss_pred             -----cHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCc
Q 010711          120 -----TAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD  194 (503)
Q Consensus       120 -----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  194 (503)
                           -...|..+.++..|..+++.++ .....++..-+++.|++++...+  .-...++.++.+.+|+.|++..+.+..
T Consensus       144 ~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  144 ATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             ccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhccccc
Confidence                 0233444445555555555552 33344444444777777776642  334567788888888888888887764


Q ss_pred             hhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhC
Q 010711          195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG  274 (503)
Q Consensus       195 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  274 (503)
                      .  ..|.+|..|+++.+..|.+.....+....++++..|++.+|++.+ .|+.+..+.+|+.||+++|.++. .+..+++
T Consensus       221 l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgn  296 (565)
T KOG0472|consen  221 L--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGN  296 (565)
T ss_pred             C--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCccccc
Confidence            3  278888888888888887766555555588889999999988875 56777788889999999888874 4555677


Q ss_pred             CCCCCEEEccCCCCChhHHHHHhc-----------------------------------------CCCCCEEecCCCccC
Q 010711          275 LTNLESLNLDSCGIGDEGLVNLTG-----------------------------------------LCNLKCLELSDTQVG  313 (503)
Q Consensus       275 ~~~L~~L~l~~~~~~~~~~~~l~~-----------------------------------------~~~L~~L~l~~~~~~  313 (503)
                      + +|+.|.+.|+.+...--..+.+                                         ..+.+.|++++-+++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            7 8888888888654322111110                                         012222333333333


Q ss_pred             hhhHHHhhCC--CCCCeeeccCCCCChHHHHHHhCCCCCC-EeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHH
Q 010711          314 SSGLRHLSGL--TNLESINLSFTGISDGSLRKLAGLSSLK-SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA  390 (503)
Q Consensus       314 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  390 (503)
                      ..+...|...  .-...++++.|++... |..+..++.+. .+.++++.+. ..+..+..+++|..|++++|.+.+.+ .
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP-~  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLP-E  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcc-h
Confidence            2222222211  1134444544444321 22122222222 2333333333 23455567788888999888776654 4


Q ss_pred             HHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711          391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  470 (503)
Q Consensus       391 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  470 (503)
                      .+..+..|+.|+++.|.+.. .|..+..+..++.+-.++| ++..+.+..+.++.+|..||+.+|.+..+ |..+++|++
T Consensus       453 e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~Lgnmtn  529 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTN  529 (565)
T ss_pred             hhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhC-Chhhccccc
Confidence            45567779999999887765 3555555566777777777 88888888899999999999999999887 558899999


Q ss_pred             cceEEeccCCCCHHHHHHH
Q 010711          471 LRSLTLESCKVTANDIKRL  489 (503)
Q Consensus       471 L~~L~l~~~~~~~~~~~~~  489 (503)
                      |++|+++||+|......-+
T Consensus       530 L~hLeL~gNpfr~Pr~~iL  548 (565)
T KOG0472|consen  530 LRHLELDGNPFRQPRHQIL  548 (565)
T ss_pred             eeEEEecCCccCCCHHHHh
Confidence            9999999999986554433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=4.8e-28  Score=221.28  Aligned_cols=367  Identities=21%  Similarity=0.201  Sum_probs=186.2

Q ss_pred             CCCeeEEEccCCCCCh-hhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           56 GSSLLSVDLSGSDVTD-SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      .+-+|-+++++|.+++ ..|.....|.+++.|.|.. ..+. ..++.++.|.+|++|.+.+|..  ...-..++.++.||
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence            4556777777777763 3344456677777777665 2332 2355666666666666666653  22233455566666


Q ss_pred             EEeccCcc-cccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711          135 KLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  213 (503)
Q Consensus       135 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  213 (503)
                      .+.+..+. +..+.|..+-.+.-|.+|+++++....  .+..+...+++-.|+++.|++...+..-+-++..|-.|++++
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            66665533 223344555555555556655532221  334444455555555555555544444445555555555555


Q ss_pred             CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC-hHHHHHhhCCCCCCEEEccCCCCChhH
Q 010711          214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT-DECLVHLKGLTNLESLNLDSCGIGDEG  292 (503)
Q Consensus       214 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~  292 (503)
                      |.+... |..+..+..|++|.+++|.+.......+..+++|++|.++++.-+ ...|..+..+.+|..++++.|++. ..
T Consensus       160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            554433 334455555555555555544433344444455555555554322 123333444555555555555443 22


Q ss_pred             HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH-HHhhcCC
Q 010711          293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSL  371 (503)
Q Consensus       293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~  371 (503)
                      |..+-.+++|+.|++++|.+..... ..+...+|++|+++.|+++. .|.++.++++|+.|+..+|+++..+ |..++.+
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            3344455555555555555443211 12223455555555555543 3444555555555555555554322 3444455


Q ss_pred             CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCC
Q 010711          372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT  434 (503)
Q Consensus       372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  434 (503)
                      ..|+.+...+|.+.- .|..+..|+.|+.|.+++|.+.. .|+.+.-++.|++|++..|+++.
T Consensus       316 ~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCcc
Confidence            555555555554432 24445555555555555555433 24444445555555555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=4.8e-28  Score=221.29  Aligned_cols=372  Identities=21%  Similarity=0.195  Sum_probs=259.7

Q ss_pred             CCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711           80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (503)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (503)
                      ++-.|-.++++|.-....-+.....+++++-|.+..+..  ...|+.++.+.+|++|.+.++ .+...-..+..++.||.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHH
Confidence            455677888887433355677888899999999988764  677999999999999999884 34445566778889999


Q ss_pred             eeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCC
Q 010711          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ  239 (503)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (503)
                      +.+..++....-.+..+..+..|+.|+++.|++. ..+..+...+++-.|++++|.+.......+.++..|-.|++++|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9998877666666777888899999999988887 556778888888899999998877655566678888888888888


Q ss_pred             CChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC-hhHHHHHhcCCCCCEEecCCCccChhhHH
Q 010711          240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSGLR  318 (503)
Q Consensus       240 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  318 (503)
                      +.. .|+.+..+..|++|++++|++.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|.+... +.
T Consensus       162 Le~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pe  239 (1255)
T KOG0444|consen  162 LEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PE  239 (1255)
T ss_pred             hhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hH
Confidence            764 5566777888888888888776555555556666777777766322 23345566677777777777766544 44


Q ss_pred             HhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCC
Q 010711          319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKN  397 (503)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~  397 (503)
                      .+-++++|+.|++++|.++.... ......+|++|.++.|+++.. |.++..++.|+.|.+.+|+++..+ |..++.+..
T Consensus       240 cly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             HHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence            45566777777777776664321 122345677777777777654 455566777777777777655433 555666667


Q ss_pred             CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711          398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  462 (503)
Q Consensus       398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  462 (503)
                      |+++..++|.+.- .|+.++.|+.|++|.++.| .+.. .|+.+.-++-|+.||+..|+-...+|
T Consensus       318 Levf~aanN~LEl-VPEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  318 LEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hHHHHhhcccccc-CchhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence            7777777665543 4566667777777777776 3333 45566667777777777775444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=5.2e-28  Score=209.35  Aligned_cols=433  Identities=22%  Similarity=0.235  Sum_probs=284.1

Q ss_pred             CChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHH
Q 010711           44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG  123 (503)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  123 (503)
                      -.+.|+.+.     .+..+.++.+.+. .....+.++..|.+|+++++ ... ..+.+++.+..++.++.+++..  ...
T Consensus        37 e~e~wW~qv-----~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~l--s~l  106 (565)
T KOG0472|consen   37 EGENWWEQV-----DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKL--SEL  106 (565)
T ss_pred             chhhhhhhc-----chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchH--hhc
Confidence            355676533     4688899988876 34456789999999999996 333 3477888888999999999974  778


Q ss_pred             HHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC
Q 010711          124 MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL  203 (503)
Q Consensus       124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  203 (503)
                      |+.+....+|+.++++. ......++.++.+..++.++..++...+  .++.+..+.++..+++.++.+....+..+. +
T Consensus       107 p~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m  182 (565)
T KOG0472|consen  107 PEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIA-M  182 (565)
T ss_pred             cHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHH-H
Confidence            99999999999999998 4567778888888889999888755444  566777778888888888887766555554 6


Q ss_pred             CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  283 (503)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  283 (503)
                      +.|+.++...|.+... |..++.+.+|..|++..|++...  +.|.++..|.++.++.|.+.-........++++..|++
T Consensus       183 ~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL  259 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL  259 (565)
T ss_pred             HHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence            7777777777665443 55677777777777777766532  25666666666666666555333334445666666666


Q ss_pred             cCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHH---------------------
Q 010711          284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLR---------------------  342 (503)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------  342 (503)
                      .++++.+. |..+..+.+|++|++++|.++.. +..++++ +|+.|.+.+|.+...--+                     
T Consensus       260 RdNklke~-Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  260 RDNKLKEV-PDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             cccccccC-chHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence            66655533 33444555666666666655443 2334444 555555555433211100                     


Q ss_pred             --------------------HHhCCCCCCEeecCCCCCCHhHHHhhc--CCCCCCEEEccCCccChH-------------
Q 010711          343 --------------------KLAGLSSLKSLNLDARQITDTGLAALT--SLTGLTHLDLFGARITDS-------------  387 (503)
Q Consensus       343 --------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-------------  387 (503)
                                          ......+.+.|++++-+++..+.+.|.  .-.-.+..++++|++...             
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~  416 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD  416 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence                                011123555666666666655544443  222355666666655433             


Q ss_pred             ----------HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          388 ----------GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       388 ----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                                .+..+..+++|..|++++|.+-+ .|..++.+..|+.|++++| .+.. .|+.+..+..++.+-.++|.+
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~N-rFr~-lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFN-RFRM-LPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccc-cccc-chHHHhhHHHHHHHHhccccc
Confidence                      23445667777777777766554 3555566667777777777 4544 445555566667777777777


Q ss_pred             chhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          458 TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       458 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      ....+..+.+|.+|.+|++..|++...- +.+  +.|.+|+++.+
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IP-p~L--gnmtnL~hLeL  535 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQQIP-PIL--GNMTNLRHLEL  535 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchhhCC-hhh--ccccceeEEEe
Confidence            7777788889999999999999865432 223  37788888865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-26  Score=219.18  Aligned_cols=419  Identities=22%  Similarity=0.234  Sum_probs=264.8

Q ss_pred             eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEec
Q 010711           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (503)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (503)
                      +..|+++.|.+-+.......++-+|++|+++++ .+.. .+..+..+++|+.|+++.|..  ...|.+..++.+|+++.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL   98 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNL   98 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhee
Confidence            555666655443322233345555777777765 3322 245556667777777777643  445666677777777777


Q ss_pred             cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH
Q 010711          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA  218 (503)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  218 (503)
                      .+ ......|..+..+++|+.|+++++....  .+..+..+..++.+..++| ..   ...++... ++.+++..+.+..
T Consensus        99 ~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N-~~---~~~lg~~~-ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   99 KN-NRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNN-EK---IQRLGQTS-IKKLDLRLNVLGG  170 (1081)
T ss_pred             cc-chhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcc-hh---hhhhcccc-chhhhhhhhhccc
Confidence            66 4566666677777777777777644322  3344455555555555555 11   22222222 6667777776655


Q ss_pred             HHHHHhhCCCCCCEEEccCCCCChhhhHhhhcC-----------------CCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711          219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI-----------------GSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (503)
Q Consensus       219 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~-----------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  281 (503)
                      .+..++..+..  .+++..|.+.......+..+                 ++++.|..+.|.+....  .-....+|+++
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~  246 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPVPLNLQYL  246 (1081)
T ss_pred             chhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccccccceee
Confidence            54555555444  58888887763222111111                 22333333333332110  01123466677


Q ss_pred             EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC
Q 010711          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  361 (503)
Q Consensus       282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  361 (503)
                      +++.+.+...+ .++..+.+|+.+....|.+... +..+....+|+.+....|.+... +....+++.|++|++..|.+.
T Consensus       247 dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  247 DISHNNLSNLP-EWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             ecchhhhhcch-HHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhcccc
Confidence            77766665444 6666777777777777666433 23333446666666666655442 233456788999999888776


Q ss_pred             HhHHHhhc-------------------------CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711          362 DTGLAALT-------------------------SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  416 (503)
Q Consensus       362 ~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  416 (503)
                      ..+.-.+.                         .++.|+.|.+.+|.+++.-...+...++|+.|++++|.+.......+
T Consensus       324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~  403 (1081)
T KOG0618|consen  324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL  403 (1081)
T ss_pred             ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence            54332211                         12345666777788887777777888899999999998887767777


Q ss_pred             hcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCC
Q 010711          417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPN  496 (503)
Q Consensus       417 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  496 (503)
                      .+++.|+.|++++| +++..+ ..+..++.|++|...+|.+...+  .+..++.|+.+|++.|.++...+....  .+|+
T Consensus       404 ~kle~LeeL~LSGN-kL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~  477 (1081)
T KOG0618|consen  404 RKLEELEELNLSGN-KLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPN  477 (1081)
T ss_pred             hchHHhHHHhcccc-hhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--CCcc
Confidence            88889999999998 777744 67788889999999988888874  667899999999999999998888776  7799


Q ss_pred             cccccC
Q 010711          497 LVSFRP  502 (503)
Q Consensus       497 L~~l~~  502 (503)
                      |++|++
T Consensus       478 LkyLdl  483 (1081)
T KOG0618|consen  478 LKYLDL  483 (1081)
T ss_pred             cceeec
Confidence            999875

>PLN03210 Resistant to P

Probab=99.86  E-value=1e-20  Score=200.73  Aligned_cols=199  Identities=23%  Similarity=0.214  Sum_probs=102.7

Q ss_pred             hhccCCCCCCEEecCCCe-----ecChhhHHHhhCCC-CCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCcc
Q 010711           75 IHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL  148 (503)
Q Consensus        75 ~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  148 (503)
                      ..|.+|++|+.|.+..+.     ......+..+..++ +|+.|.+.+++.  ...|..+ ...+|++|++.++ .+...+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s-~l~~L~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGS-KLEKLW  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCc-cccccc
Confidence            345667777777664321     01111223344333 567777766542  3334444 3466777777663 344455


Q ss_pred             ccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCC
Q 010711          149 VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG  228 (503)
Q Consensus       149 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~  228 (503)
                      ..+..+++|+.|+++++..+...  +.+..+++|+.|++.++......+..+..+++|+.|++++|......+..+ +++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            55566667777777665544322  235556667777766654444445556666666666666654332222222 456


Q ss_pred             CCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccC
Q 010711          229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  285 (503)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  285 (503)
                      +|+.|++++|......+.   ...+|+.|+++++.+.. .+..+ .+++|+.|.+.+
T Consensus       705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCE  756 (1153)
T ss_pred             CCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccc
Confidence            666666666543322221   12456666666655432 22111 345555555544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=1.2e-20  Score=200.08  Aligned_cols=342  Identities=21%  Similarity=0.182  Sum_probs=235.7

Q ss_pred             hHHHhhCCCCCCEEEcCCCc-----cccHHHHHHHhCCC-CCcEEeccCcccccCccccccCCccccEeeccCCcCCCcc
Q 010711           98 GLEHLRGLSNLTSLSFRRNN-----AITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS  171 (503)
Q Consensus        98 ~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  171 (503)
                      ...+|..+++|++|.+..+.     ......|..+..++ +|+.|.+.++ .....|..+ ...+|++|++.++. +. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-cc-c
Confidence            45678899999999986542     11233456666654 6999999884 355556555 46889999998854 33 2


Q ss_pred             ccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcC
Q 010711          172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI  251 (503)
Q Consensus       172 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  251 (503)
                      ....+..+++|+.++++++...... ..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            3455677899999999876433222 247788999999999987666667788889999999999876544444433 67


Q ss_pred             CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh-------hhHHHhhCCC
Q 010711          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT  324 (503)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~  324 (503)
                      ++|+.|++++|......+.   ...+|+.|.++++.+... +..+ .+++|++|.+.++....       ........++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            8899999988754333332   246788999988876543 2222 46778888776533111       1111223357


Q ss_pred             CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                      +|+.|++++|......+..++++++|+.|++++|......+... .+++|+.|++++|......+.   ..++|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence            88899998886555566778888999999998864333233332 678899999998854433222   24678889999


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~  456 (503)
                      +|.++.. +..+..+++|+.|++++|.++...+ ..+..+++|+.+++++|.
T Consensus       855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCccC-hHHHhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCc
Confidence            8888763 5677888899999999887777643 355678888888888884

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.83  E-value=2e-18  Score=159.92  Aligned_cols=207  Identities=29%  Similarity=0.408  Sum_probs=100.2

Q ss_pred             hCCCCCCEEEccCCCCChhHHHHHhcCCC---CCEEecCCCccChhhH----HHhhCC-CCCCeeeccCCCCChH----H
Q 010711          273 KGLTNLESLNLDSCGIGDEGLVNLTGLCN---LKCLELSDTQVGSSGL----RHLSGL-TNLESINLSFTGISDG----S  340 (503)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~---L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~  340 (503)
                      ..+++|+.|++++|.+....+..+..+.+   |++|+++++.+.....    ..+..+ ++|+.+++++|.++..    .
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            33445555555555444332333322222   5555555554442211    122333 5566666666655522    1


Q ss_pred             HHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHH----HHHhcCCCCCeEEecCCCCChhH
Q 010711          341 LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                      ...+..+++|++|++++|.+.+...    ..+..+++|+.|++++|.+.+...    ..+..+++|++|++++|.+++..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            2234445566666666666654322    223344566666666666554332    22344556666666666665543


Q ss_pred             HHhhhc-----CCCCceeeccCCCCCChh----hHHHHhcCCCCcEEecccCccchhhH----hhccCC-cccceEEecc
Q 010711          413 VKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLKPL-KNLRSLTLES  478 (503)
Q Consensus       413 ~~~~~~-----~~~L~~L~l~~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~  478 (503)
                      ...+..     .+.|+.|++++| .++..    ....+..+++|+.+++++|.+++.+.    ..+... +.|+++++.+
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            333321     246666666666 44421    12233445566666666666664432    222223 4566666665


Q ss_pred             CC
Q 010711          479 CK  480 (503)
Q Consensus       479 ~~  480 (503)
                      ++
T Consensus       317 ~~  318 (319)
T cd00116         317 DS  318 (319)
T ss_pred             CC
Confidence            54

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.81  E-value=1.5e-17  Score=154.08  Aligned_cols=256  Identities=28%  Similarity=0.343  Sum_probs=150.1

Q ss_pred             hcCCCCCEEEcCCCCCcHH----HHHHhhCCCCCCEEEccCCCCC------hhhhHhhhcCCCCCEEEccCCCCChHHHH
Q 010711          201 KGLQKLTLLNLEGCPVTAA----CLDSLSALGSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDECLV  270 (503)
Q Consensus       201 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  270 (503)
                      ..+.+|+.++++++.+...    .+..+...+++++++++++.+.      ...+..+..+++|+.|+++++.+....+.
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            3344455555555544322    1222334445555555555443      11223444555666666666655433333


Q ss_pred             HhhCC---CCCCEEEccCCCCChhH----HHHHhcC-CCCCEEecCCCccChh----hHHHhhCCCCCCeeeccCCCCCh
Q 010711          271 HLKGL---TNLESLNLDSCGIGDEG----LVNLTGL-CNLKCLELSDTQVGSS----GLRHLSGLTNLESINLSFTGISD  338 (503)
Q Consensus       271 ~l~~~---~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  338 (503)
                      .+..+   ++|+.|++++|.+.+..    ...+..+ ++|+.+++++|.+...    ....+..+++|+.|++++|.+.+
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            33222   33677777666655322    2233444 6677777777766532    22344556677888887777764


Q ss_pred             HHH----HHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHHHHHhc-----CCCCCeEEecC
Q 010711          339 GSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEICG  405 (503)
Q Consensus       339 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~  405 (503)
                      ...    ..+..+++|+.|++++|.+.+...    ..+..+++|+.|++++|.+.+.....+..     .+.|++|++++
T Consensus       180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence            322    234456688888888887775443    33456788888888888887654444322     37888999988


Q ss_pred             CCCChhHH----HhhhcCCCCceeeccCCCCCChhhH----HHHhcC-CCCcEEecccCcc
Q 010711          406 GGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTL----ELISGL-TGLVSLNVSNSRI  457 (503)
Q Consensus       406 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~l-~~L~~L~l~~~~~  457 (503)
                      |.+++.+.    ..+..+++|+.+++++| .++....    ..+... +.|+.+++.++++
T Consensus       260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         260 NDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            88874332    34455678999999998 7776533    334445 6888888887753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=5.1e-20  Score=159.83  Aligned_cols=250  Identities=23%  Similarity=0.228  Sum_probs=132.7

Q ss_pred             CCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC-CCCChhhhHhhhcCCCCCEEEcc
Q 010711          182 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLG  260 (503)
Q Consensus       182 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~  260 (503)
                      -..+++..|.++..+...|+.+++|+.|++++|.+....+.+|.++.++..|-+.+ |+++......|.++..++.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34455555666555555566666666666666665555555566665555555554 55555555555555555555555


Q ss_pred             CCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh--------------------------
Q 010711          261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS--------------------------  314 (503)
Q Consensus       261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--------------------------  314 (503)
                      -+++.......+..++++..|.+.++.+.......+..+..++.+++..+.+..                          
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            555554444555555566555555554433333344444455555544443111                          


Q ss_pred             ----------hhHHHhh-CCCCCCeeeccCCCC-ChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCC
Q 010711          315 ----------SGLRHLS-GLTNLESINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA  382 (503)
Q Consensus       315 ----------~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  382 (503)
                                .....+. ....+.+-.-..+.. .......|.++++|+++++++|.+++....+|.....+++|.+..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                      0000000 000110001111111 1112234556666666666666666666666666666666666666


Q ss_pred             ccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       383 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      ++.......|..+..|+.|++.+|+|+...+.+|..+.+|..|++-.|+
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            6666666666666666666666666666666666666666666665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.72  E-value=3e-19  Score=155.15  Aligned_cols=130  Identities=24%  Similarity=0.238  Sum_probs=107.6

Q ss_pred             CCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccC-CCCChHHHHHhhCCCCCCEEEc
Q 010711          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL  283 (503)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l  283 (503)
                      .-..+++..|.+....+.+|+.+++|+.|++++|.++.+.+.+|.+++.+..|-+.+ |++++.....|..+..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            556789999999988888999999999999999999999999999999888777766 8888777778888999999988


Q ss_pred             cCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC
Q 010711          284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT  334 (503)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  334 (503)
                      .-+.+.-....+|..++++..|.+.+|.+.......+..+..++.+.+..+
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            888887777889999999999999998776654445555666666665544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=1.5e-15  Score=150.17  Aligned_cols=262  Identities=20%  Similarity=0.116  Sum_probs=127.0

Q ss_pred             cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (503)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (503)
                      .-..|+++++. ++. .+..+.  ++|+.|++..|+++..+    ...++|++|++++|.+... +.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~-Lts-LP~~l~--~~L~~L~L~~N~Lt~LP----~lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESG-LTT-LPDCLP--AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCC-CCc-CCcchh--cCCCEEEccCCcCCCCC----CCCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            34556666543 332 223332  35667777666665422    1245666677766665542 11   1245666666


Q ss_pred             cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChh
Q 010711          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  315 (503)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  315 (503)
                      ++|.+... +.   .+.+|+.|++++|.+... +.   .+++|+.|++++|.+...+.    ...+|+.|++.+|.+...
T Consensus       270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             cCCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCccccc
Confidence            66655431 11   124566666666655532 11   23556666666665543211    123455555655554332


Q ss_pred             hHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC
Q 010711          316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  395 (503)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  395 (503)
                      . .   ..++|+.|++++|.++....    ..++|+.|++++|.+...+ .   ..++|+.|++++|.+...+.    ..
T Consensus       338 P-~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP~----l~  401 (788)
T PRK15387        338 P-T---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLPV----LP  401 (788)
T ss_pred             c-c---cccccceEecCCCccCCCCC----CCcccceehhhccccccCc-c---cccccceEEecCCcccCCCC----cc
Confidence            1 0   11356666666665553211    1235555556555555321 1   12355666666665553221    12


Q ss_pred             CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711          396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  463 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  463 (503)
                      ++|+.|++++|.+... +..   ..+|+.|++++| +++. .|..+.++++|+.|++++|+++...+.
T Consensus       402 s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        402 SELKELMVSGNRLTSL-PML---PSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHH
Confidence            4555666666655542 111   234555556555 4543 334455555666666666655554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.59  E-value=6.3e-15  Score=145.75  Aligned_cols=263  Identities=21%  Similarity=0.104  Sum_probs=124.4

Q ss_pred             CcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcC
Q 010711          133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE  212 (503)
Q Consensus       133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  212 (503)
                      -..|+++.+ .+...|..+.  ++|+.|++.++. ++.. +.   ..++|++|++++|+++..+ .   ..++|+.|++.
T Consensus       203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCccc-C---cccccceeecc
Confidence            445555553 3334444333  255666665532 2211 11   2355666666666555321 1   12455666666


Q ss_pred             CCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhH
Q 010711          213 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG  292 (503)
Q Consensus       213 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  292 (503)
                      +|.+... +.   ...+|+.|++++|.+... +.   .+++|+.|++++|.+... +.   ...+|+.|.+.+|.++..+
T Consensus       271 ~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccccc
Confidence            6654432 11   113455666666655432 11   234566666666655431 11   1234555556555554321


Q ss_pred             HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCC
Q 010711          293 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT  372 (503)
Q Consensus       293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  372 (503)
                      .    ...+|+.|++++|.+.....    ..++|+.|.+.+|.+... +.   ..++|+.|++++|.++..+.    ..+
T Consensus       339 ~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~----l~s  402 (788)
T PRK15387        339 T----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPV----LPS  402 (788)
T ss_pred             c----cccccceEecCCCccCCCCC----CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCC----ccc
Confidence            1    11356666666665543211    123455555655555431 11   12356666666665554211    124


Q ss_pred             CCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH
Q 010711          373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  441 (503)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  441 (503)
                      +|+.|++++|++...+. .   ..+|+.|++++|.++. .+..+..+++|+.|++++| .++...+..+
T Consensus       403 ~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N-~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGN-PLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCC-CCCchHHHHH
Confidence            56666666665554321 1   2345556666666554 2444555566666666666 4555444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.58  E-value=3.2e-14  Score=122.45  Aligned_cols=191  Identities=24%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             cCCCCCEEecCCCccChhhHH----HhhCCCCCCeeeccCCCCChHHHHHH-------------hCCCCCCEeecCCCCC
Q 010711          298 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRKL-------------AGLSSLKSLNLDARQI  360 (503)
Q Consensus       298 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~  360 (503)
                      .+|+|+++++++|.++...+.    .++++..|++|.+.+|++....-..+             +.-+.|+++...+|.+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            445566666666655544332    23455666666666665554332221             1335777777777766


Q ss_pred             CHhHH----HhhcCCCCCCEEEccCCccChHH----HHHHhcCCCCCeEEecCCCCChhHHH----hhhcCCCCceeecc
Q 010711          361 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLS  428 (503)
Q Consensus       361 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~  428 (503)
                      ...+.    ..|...+.|+.+.++.|.+...+    ...+.++++|+.|++.+|.++..+..    .++.+++|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            54332    34556677777777777665443    34567788888888888877654433    34556778888888


Q ss_pred             CCCCCChhhHHHH----h-cCCCCcEEecccCccchhhHh----hccCCcccceEEeccCCC--CHHHHHHH
Q 010711          429 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGLR----HLKPLKNLRSLTLESCKV--TANDIKRL  489 (503)
Q Consensus       429 ~~~~l~~~~~~~~----~-~l~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~--~~~~~~~~  489 (503)
                      +| .+.......+    . ..|+|+.|.+.+|.++.....    .+...|.|..|++++|.+  ...++..+
T Consensus       250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei  320 (382)
T KOG1909|consen  250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI  320 (382)
T ss_pred             cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence            88 6665443332    2 467888888888887765432    334567888888888887  34444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.53  E-value=8.5e-14  Score=119.88  Aligned_cols=234  Identities=25%  Similarity=0.305  Sum_probs=136.9

Q ss_pred             HHhhhcCCCCCEEEcCCCCCcHHHHH----HhhCCCCCCEEEccCCCC---Chhhh-------HhhhcCCCCCEEEccCC
Q 010711          197 IAYLKGLQKLTLLNLEGCPVTAACLD----SLSALGSLFYLNLNRCQL---SDDGC-------EKFSKIGSLKVLNLGFN  262 (503)
Q Consensus       197 ~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~---~~~~~-------~~l~~~~~L~~L~l~~~  262 (503)
                      ...+.....++.+++++|.+......    .+.+.++|+..++++.-.   ....+       ..+..+++|++++++.|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            34445556677777777766554333    234455666666654311   11122       23335567788888777


Q ss_pred             CCChHHH----HHhhCCCCCCEEEccCCCCChhHHHHH-------------hcCCCCCEEecCCCccChhh----HHHhh
Q 010711          263 EITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNL-------------TGLCNLKCLELSDTQVGSSG----LRHLS  321 (503)
Q Consensus       263 ~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~~----~~~~~  321 (503)
                      .+....+    ..+.++..|++|.|.+|.++...-..+             ..-++|+.+....|++...+    ...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            6554433    234567788888888887765433332             23456777777777665432    23455


Q ss_pred             CCCCCCeeeccCCCCChHH----HHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHHHHH-
Q 010711          322 GLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYL-  392 (503)
Q Consensus       322 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~-  392 (503)
                      ..+.|+.+.+..|.+....    ...+..+++|+.|++.+|.++..+.    ..++.+++|+.|++++|.+...+..++ 
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            5677777777776554332    2345567777777777777765443    334456677777777776666554443 


Q ss_pred             ----hcCCCCCeEEecCCCCChhHHHhh----hcCCCCceeeccCC
Q 010711          393 ----RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQN  430 (503)
Q Consensus       393 ----~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~  430 (503)
                          ...|+|+.|.+.+|.|+......+    ...|.|.+|+|++|
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence                335677777777777665443322    22366666666666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=5.8e-14  Score=139.88  Aligned_cols=149  Identities=17%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                      +|+.|++++|.++... ..+  .++|+.|++++|.++..+. .  -.++|+.|++++|.++..+. .+  +++|+.|+++
T Consensus       284 sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~LP~-~--l~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls  354 (754)
T PRK15370        284 ELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTALPE-T--LPPGLKTLEAGENALTSLPA-SL--PPELQVLDVS  354 (754)
T ss_pred             CCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccCCc-c--ccccceeccccCCccccCCh-hh--cCcccEEECC
Confidence            4555555555444311 111  1245555555555543211 1  12455666666665554321 22  2456666666


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhh---HhhccCCcccceEEeccCCC
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~  481 (503)
                      +|.+... +..+  .++|+.|+|++| .++..++. +.  ..|+.|++++|++...+   +.....++++..|++.+|++
T Consensus       355 ~N~L~~L-P~~l--p~~L~~LdLs~N-~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        355 KNQITVL-PETL--PPTITTLDVSRN-ALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCCCcC-Chhh--cCCcCEEECCCC-cCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            6655532 2222  245666666666 45543322 21  24666666666655432   12223345666666666666


Q ss_pred             CHHHHHHH
Q 010711          482 TANDIKRL  489 (503)
Q Consensus       482 ~~~~~~~~  489 (503)
                      +...++.+
T Consensus       428 s~~tl~~L  435 (754)
T PRK15370        428 SERTIQNM  435 (754)
T ss_pred             cHHHHHHH
Confidence            65554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.46  E-value=1.5e-13  Score=121.17  Aligned_cols=296  Identities=30%  Similarity=0.399  Sum_probs=182.3

Q ss_pred             CCCEEEcCCCCCcHH-HHH-HhhCCCCCCEEEccCCCC-ChhhhHhh-hcCCCCCEEEccCC-CCChHHHH-HhhCCCCC
Q 010711          205 KLTLLNLEGCPVTAA-CLD-SLSALGSLFYLNLNRCQL-SDDGCEKF-SKIGSLKVLNLGFN-EITDECLV-HLKGLTNL  278 (503)
Q Consensus       205 ~L~~L~l~~~~~~~~-~~~-~l~~l~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~~L  278 (503)
                      .|+.|.+.|+.-... ... .-..++++++|.+.++.. ++.....+ ..+++++.+++..+ .+++.... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            455566666532211 111 123556666666666542 22222333 24567777777663 34443333 33567778


Q ss_pred             CEEEccCC-CCChhHHHHH-hcCCCCCEEecCCCcc-ChhhHHHh-hCCCCCCeeeccCC-CCChHHHHHHh-CCCCCCE
Q 010711          279 ESLNLDSC-GIGDEGLVNL-TGLCNLKCLELSDTQV-GSSGLRHL-SGLTNLESINLSFT-GISDGSLRKLA-GLSSLKS  352 (503)
Q Consensus       279 ~~L~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~  352 (503)
                      +++++++| .+.+.....+ .++..++.+...++.- ........ ..++.+..+++..| .+++.....+. .+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            88887777 4443322222 3444455555554421 11111111 23455666666555 45554433333 4678888


Q ss_pred             eecCCC-CCCHhHHHhhc-CCCCCCEEEccCCc-cChHHHHHH-hcCCCCCeEEecCCCCChhH-HHhh-hcCCCCceee
Q 010711          353 LNLDAR-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHI-KDLSSLTLLN  426 (503)
Q Consensus       353 L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~  426 (503)
                      +..+++ .+++.....++ ++++|+.+.+.+|+ +++.....+ .+++.|+.+++.++...... ..++ .+++.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            888774 45555555554 78899999998884 444444444 46788999999887643332 2333 4679999999


Q ss_pred             ccCCCCCChhhHHHH----hcCCCCcEEecccCc-cchhhHhhccCCcccceEEeccC-CCCHHHHHHHHhcCCCCcccc
Q 010711          427 LSQNCNLTDKTLELI----SGLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNLVSF  500 (503)
Q Consensus       427 l~~~~~l~~~~~~~~----~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~l  500 (503)
                      ++.|..+++.....+    .++..|+.+.+++|+ +++...+++..+++|+++++-+| .++..+++.+. ..+|+++..
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~-~~lp~i~v~  457 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA-THLPNIKVH  457 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH-hhCccceeh
Confidence            999977777643333    346789999999995 55666788899999999999999 78999999988 899998764


Q ss_pred             c
Q 010711          501 R  501 (503)
Q Consensus       501 ~  501 (503)
                      .
T Consensus       458 a  458 (483)
T KOG4341|consen  458 A  458 (483)
T ss_pred             h
Confidence            3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.46  E-value=1.1e-13  Score=122.02  Aligned_cols=230  Identities=25%  Similarity=0.360  Sum_probs=133.3

Q ss_pred             CCeeEEEccCCCC-Chhhhhhc-cCCCCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHHHHHHHh-CCCC
Q 010711           57 SSLLSVDLSGSDV-TDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFA-GLIN  132 (503)
Q Consensus        57 ~~l~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~  132 (503)
                      ..++.|++.+..- .+.....+ .+||++++|.+.+|..+++.....++ .|++|++|++..|..+++...+.+. .|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4678888887433 23333334 67888888888888877777666665 7888888888887777776666443 7888


Q ss_pred             CcEEeccCcccccCcc--ccccCCccccEeeccCCcCCCcccccccc-CCCCCCEEEeec-ccCCchhHHhh-hcCCCCC
Q 010711          133 LVKLDLERCTRIHGGL--VNLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQISC-SKVTDSGIAYL-KGLQKLT  207 (503)
Q Consensus       133 L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~-~~~~~~~~~~l-~~~~~L~  207 (503)
                      |++|+++.|+.+...-  .....+..++.+...+|............ .+..+.++++.. +.+++.....+ ..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            8888888887666521  23455666777766666655443333222 344455555433 34554443333 4566777


Q ss_pred             EEEcCCCCC-cHHHHHHhh-CCCCCCEEEccCCC-CChhhhHhhh-cCCCCCEEEccCCCCChH--HHHHhhCCCCCCEE
Q 010711          208 LLNLEGCPV-TAACLDSLS-ALGSLFYLNLNRCQ-LSDDGCEKFS-KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESL  281 (503)
Q Consensus       208 ~L~l~~~~~-~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L  281 (503)
                      .+..+++.. +......++ ..++|+.+.+..|+ ++......++ +++.|+.+++..+.....  ....-.+++.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            777777643 233333333 45677777776654 2222222332 345566666555432211  11122345566666


Q ss_pred             EccCC
Q 010711          282 NLDSC  286 (503)
Q Consensus       282 ~l~~~  286 (503)
                      .++.|
T Consensus       378 slshc  382 (483)
T KOG4341|consen  378 SLSHC  382 (483)
T ss_pred             Chhhh
Confidence            66555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-14  Score=147.11  Aligned_cols=256  Identities=19%  Similarity=0.182  Sum_probs=165.1

Q ss_pred             CcHHHHHHHHHHHHhccccCcccc-cccccCceeEEecCCCCCCChhHH-----H-----------HHHhcCCCeeEEEc
Q 010711            2 LPRDISQQIFNELVYSRCLTEVSL-EAFRDCALQDLCLGQYPGVNDKWM-----D-----------VIASQGSSLLSVDL   64 (503)
Q Consensus         2 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~-----~-----------~~~~~~~~l~~L~l   64 (503)
                      ..++.++.|+.+|+++++++.... ..+..|++||+..+-+..+++.+.     .           .-.......|+..+
T Consensus       451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~  530 (889)
T KOG4658|consen  451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL  530 (889)
T ss_pred             chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence            357899999999999999877665 355578899886542221111000     0           00112345677777


Q ss_pred             cCCCCChhhhhhccCCCCCCEEecCCCee-cChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCccc
Q 010711           65 SGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTR  143 (503)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  143 (503)
                      .++.+..  ...-..+++|+.|-+.++.. +.....+.|..+|.|++|++++|.. ...+|..++.+.+||+|++++ +.
T Consensus       531 ~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~-t~  606 (889)
T KOG4658|consen  531 MNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSD-TG  606 (889)
T ss_pred             eccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccC-CC
Confidence            7665532  12235677899999998642 5556667788999999999999864 367899999999999999999 67


Q ss_pred             ccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc--CCchhHHhhhcCCCCCEEEcCCCCCcHHHH
Q 010711          144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEGCPVTAACL  221 (503)
Q Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  221 (503)
                      +...|..+++++.|.+|++..+...... +.....+.+|++|.+....  ........+.++.+|+.+.......  ...
T Consensus       607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~  683 (889)
T KOG4658|consen  607 ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL  683 (889)
T ss_pred             ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH
Confidence            8899999999999999999986654433 4555669999999997654  2333445556666666666644332  111


Q ss_pred             HHhhCCCCCCE----EEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711          222 DSLSALGSLFY----LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (503)
Q Consensus       222 ~~l~~l~~L~~----L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  265 (503)
                      ..+..+..|..    +.+..+.. ...+..+..+.+|+.|.+..+.+.
T Consensus       684 e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  684 EDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence            22233333332    22211111 122334455667777777666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=9.3e-13  Score=131.38  Aligned_cols=228  Identities=18%  Similarity=0.209  Sum_probs=111.4

Q ss_pred             CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (503)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  259 (503)
                      ++|+.|++++|.++..+. .+  .++|+.|++++|.+... +..+.  ++|+.|++++|.+.. .+..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRITE-LPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccC-Chhhh--ccccEEECcCCccCc-CChhHh--CCCCEEEC
Confidence            356666666665553322 11  13566666666655432 22221  245555555555542 222221  34555555


Q ss_pred             cCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH
Q 010711          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  339 (503)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  339 (503)
                      ++|.+.. .+..+  +++|+.|++++|+++                        .... .+  .++|+.|++++|.++..
T Consensus       270 s~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt------------------------~LP~-~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        270 FHNKISC-LPENL--PEELRYLSVYDNSIR------------------------TLPA-HL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccCc-ccccc--CCCCcEEECCCCccc------------------------cCcc-cc--hhhHHHHHhcCCccccC
Confidence            5554442 22111  134455555544443                        2110 00  12455555555554432


Q ss_pred             HHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcC
Q 010711          340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL  419 (503)
Q Consensus       340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  419 (503)
                      . ..+  .++|+.|.+++|.++..+ ..+  .++|+.|++++|.+...+. .+  .++|+.|++++|.++.... .+.  
T Consensus       320 P-~~l--~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~-~l~--  387 (754)
T PRK15370        320 P-ETL--PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPE-NLP--  387 (754)
T ss_pred             C-ccc--cccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCH-hHH--
Confidence            1 111  245666666666665432 222  2567777777776654322 22  3567777777777665322 222  


Q ss_pred             CCCceeeccCCCCCChhh---HHHHhcCCCCcEEecccCccch
Q 010711          420 SSLTLLNLSQNCNLTDKT---LELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       420 ~~L~~L~l~~~~~l~~~~---~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      +.|+.|++++| ++...+   +.....++++..|++.+|+++.
T Consensus       388 ~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            35677777777 555432   2233345677777777777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=8.9e-13  Score=116.98  Aligned_cols=210  Identities=25%  Similarity=0.279  Sum_probs=124.9

Q ss_pred             hCCCCCCEEEccCCCCChhHH-HHHhcCCCCCEEecCCCccChh--hHHHhhCCCCCCeeeccCCCCChHHHHH-HhCCC
Q 010711          273 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRK-LAGLS  348 (503)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  348 (503)
                      ..+.+|+.+.+.++.....+. .....+++++.|+++.|-+...  .....+.+|+|+.|+++.|.+....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456778888888875543322 3455678888888887755432  2344567788888888877554221111 11457


Q ss_pred             CCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceee
Q 010711          349 SLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLN  426 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  426 (503)
                      .|+.|.++.|.++..... ....+|+|+.|.+.+|...........-+..|++|+|++|++.+. .....+.+|.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            777788877777754332 334677777777777742222222223456677777777765442 233456677777777


Q ss_pred             ccCCCCCChhhH-HH-----HhcCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCCH
Q 010711          427 LSQNCNLTDKTL-EL-----ISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       427 l~~~~~l~~~~~-~~-----~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      ++.| .++.+.. +.     ...+++|+.|++..|++.+... ..+...++|+.|.+.+|+++.
T Consensus       278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            7777 4444321 11     2456777777777777654322 344456677777777776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1e-11  Score=104.77  Aligned_cols=195  Identities=22%  Similarity=0.237  Sum_probs=98.0

Q ss_pred             CCEEecCCCccChhh-HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCC-CCCCHhHHH-hhcCCCCCCEEE
Q 010711          302 LKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA-ALTSLTGLTHLD  378 (503)
Q Consensus       302 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~-~~~~~~~L~~L~  378 (503)
                      |+++++++..+.... ...++.|.+|+.+.+.+..+.+.....++.-.+|+.++++. +.+++.+.. .+.+|..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            444444444333221 22234445555555555555555555555555555555554 244443332 233555555555


Q ss_pred             ccCCccChHHHHHH-hc-CCCCCeEEecCCC--C-ChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711          379 LFGARITDSGAAYL-RN-FKNLRSLEICGGG--L-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (503)
Q Consensus       379 l~~~~~~~~~~~~~-~~-~~~L~~L~l~~~~--~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  453 (503)
                      ++.|.......... .+ -+.|+.|+++|+.  + ..........+|.|..||++.|..++......|.+++.|+.|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            55554433322111 11 2455566665531  1 111223335567777777777766666555666677777777777


Q ss_pred             cCcc-chhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711          454 NSRI-TSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  498 (503)
Q Consensus       454 ~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  498 (503)
                      .|.. .....-.+...|+|.+|++.||-- +...+.+. ..+|+|+
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~vs-dt~mel~~-e~~~~lk  390 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGCVS-DTTMELLK-EMLSHLK  390 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEeccccC-chHHHHHH-HhCcccc
Confidence            7742 222223445677777777777721 22233333 4566654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.21  E-value=1.1e-13  Score=106.74  Aligned_cols=156  Identities=18%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             CCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711           80 CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (503)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (503)
                      +.+..+|.+++| .++.. +..++.+.+|+.|+++++..  ...|..++.++.|+.|+++- ......|..++.+|.|++
T Consensus        32 ~s~ITrLtLSHN-Kl~~v-ppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVV-PPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccC-ceeec-CCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence            344444444443 22211 23344445555555555432  34455555555555555554 234445555666666666


Q ss_pred             eeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCC
Q 010711          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ  239 (503)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  239 (503)
                      |++.+++.-....+..+..+..|+.|+++.+.+. ..+..++++++|+.|.+..|.+... +..++.+..|+.|.+.++.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccce
Confidence            6666655545555566666666777777766665 3345566777777777777665443 4556666777777777766


Q ss_pred             CCh
Q 010711          240 LSD  242 (503)
Q Consensus       240 ~~~  242 (503)
                      +..
T Consensus       185 l~v  187 (264)
T KOG0617|consen  185 LTV  187 (264)
T ss_pred             eee
Confidence            653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3e-12  Score=113.66  Aligned_cols=212  Identities=22%  Similarity=0.252  Sum_probs=152.9

Q ss_pred             hcCCCCCEEEccCCCCChHHH-HHhhCCCCCCEEEccCCCCChh--HHHHHhcCCCCCEEecCCCccChhhHH-HhhCCC
Q 010711          249 SKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLT  324 (503)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~  324 (503)
                      +++.+|+.+.+.++.+..... .....|++++.|+++.+-+...  .......+|+|+.|+++.|.+...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            467889999998887664332 3567799999999999854432  233445799999999999876432111 112568


Q ss_pred             CCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEE
Q 010711          325 NLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLE  402 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  402 (503)
                      +|+.|.++.|+++.... .....+|+|+.|++..|............+..|++|++++|.+.+.. ......+|.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            99999999999885443 44557999999999998421111122335678999999999887754 23457899999999


Q ss_pred             ecCCCCChhHHHhh------hcCCCCceeeccCCCCCChh-hHHHHhcCCCCcEEecccCccchhh
Q 010711          403 ICGGGLTDAGVKHI------KDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG  461 (503)
Q Consensus       403 l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~  461 (503)
                      ++.+++........      ..+++|++|+++.| ++.+. ....+..+++|+.|.+.+|++....
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccccc
Confidence            99998876543332      44699999999999 66543 3456677899999999999887643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.2e-11  Score=100.06  Aligned_cols=127  Identities=27%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711          346 GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  424 (503)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  424 (503)
                      +..++++|++.++.++..  +.++ .+.+|+.|++++|.++...  .+..++.|++|++++|.|+.........+|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            344677777777777652  3343 4567777777777776542  4556777777777777776643322234677777


Q ss_pred             eeccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEec
Q 010711          425 LNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE  477 (503)
Q Consensus       425 L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~  477 (503)
                      |++++| ++.... ...+..+++|+.|++.+|++.+..-   ..+..+|+|+.||-.
T Consensus        93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            777777 554432 2345566777777777776665321   223456666666443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1e-10  Score=98.86  Aligned_cols=179  Identities=24%  Similarity=0.286  Sum_probs=100.5

Q ss_pred             CCCEEEccCCCCChhH-HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHH-HHhCCCCCCEe
Q 010711          277 NLESLNLDSCGIGDEG-LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLR-KLAGLSSLKSL  353 (503)
Q Consensus       277 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L  353 (503)
                      .|+++++++..++... ...+..|.+|+.|.+.++++.+.....+..-.+|+.++++.+ +++..... .+.+|+.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3555566555554322 223445556666666666665555555555566666666655 44443332 34456666666


Q ss_pred             ecCCCCCCHhHHHhh-c-CCCCCCEEEccCCc--cCh-HHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeec
Q 010711          354 NLDARQITDTGLAAL-T-SLTGLTHLDLFGAR--ITD-SGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       354 ~l~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  427 (503)
                      .++.|.+........ . --++|+.|+++|+.  +.. ........+|+|.+|+++++. +++.....|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            666655443322211 1 22566677776652  111 112223567777777777653 45545556666777777777


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNS  455 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~  455 (503)
                      +.|..+.....-.+...|+|.+|++.+|
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccc
Confidence            7775555544445556777777777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.13  E-value=5.3e-13  Score=103.02  Aligned_cols=156  Identities=21%  Similarity=0.152  Sum_probs=128.6

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .+++++|.++++.++ ..+..++.+.+|++|++++| ++. ..+..++.+++||.|++..+..  ...|..|+.+|.|++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchhhh
Confidence            567889999999987 67788899999999999986 554 4577889999999999998874  567999999999999


Q ss_pred             EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711          136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (503)
Q Consensus       136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  214 (503)
                      |++..+.... ..|..+--++.|+.|+++++..  ...+..++++++|+.|.+..+.+- ..+..++.+.+|++|.+.+|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            9999854333 3456677788999999997543  347788999999999999988776 45677889999999999999


Q ss_pred             CCcHH
Q 010711          215 PVTAA  219 (503)
Q Consensus       215 ~~~~~  219 (503)
                      .++..
T Consensus       184 rl~vl  188 (264)
T KOG0617|consen  184 RLTVL  188 (264)
T ss_pred             eeeec
Confidence            87654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=4.4e-11  Score=96.82  Aligned_cols=125  Identities=30%  Similarity=0.401  Sum_probs=33.1

Q ss_pred             CCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          324 TNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      .++++|++.++.++..  +.++ .+.+|+.|++++|.++.  .+.+..++.|+.|++++|+++.........+|+|++|.
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3455555555555432  2232 34555566666655554  23344555556666666555554322223455566666


Q ss_pred             ecCCCCChhH-HHhhhcCCCCceeeccCCCCCChh---hHHHHhcCCCCcEEecc
Q 010711          403 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVS  453 (503)
Q Consensus       403 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~l~~L~~L~l~  453 (503)
                      +++|.|.+.. ...+..+++|+.|++.+|+ ++..   -...+..+|+|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence            6555554321 2334445555566665552 2211   12334455555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=4e-11  Score=121.85  Aligned_cols=183  Identities=22%  Similarity=0.269  Sum_probs=124.7

Q ss_pred             cCCCeeEEEccCCC--CChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711           55 QGSSLLSVDLSGSD--VTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN  132 (503)
Q Consensus        55 ~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  132 (503)
                      .++.+++|-+.++.  +.......|..++.|++||+++|... ...|..++.+-+||||+++++..  ..+|..+.++..
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKK  619 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCc--cccchHHHHHHh
Confidence            46679999999875  44444455789999999999997544 34688999999999999999974  578999999999


Q ss_pred             CcEEeccCcccccCccccccCCccccEeeccCCc-CCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCC----
Q 010711          133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN-CITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT----  207 (503)
Q Consensus       133 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~----  207 (503)
                      |.+|++..+......+.....+++||+|.+.... ..+......+..+.+|+.+.+.....  .....+.....|.    
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence            9999999866555555556679999999998643 22223334555666666666643322  1122222333322    


Q ss_pred             EEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChh
Q 010711          208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD  243 (503)
Q Consensus       208 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  243 (503)
                      .+.+.++.... ....+..+.+|+.|.+.++.+.+.
T Consensus       698 ~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  698 SLSIEGCSKRT-LISSLGSLGNLEELSILDCGISEI  732 (889)
T ss_pred             hhhhcccccce-eecccccccCcceEEEEcCCCchh
Confidence            23322332222 234567788999999999887643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.91  E-value=2.1e-10  Score=97.11  Aligned_cols=126  Identities=25%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  428 (503)
                      .|+++++++|.++... ....-.|.++.|+++.|.+.....  ++.+++|++|++++|.++.. ..+-..+.+.++|.++
T Consensus       285 ~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence            3444444444444321 222333444455554444443321  34444555555554444332 1122233444445444


Q ss_pred             CCCCCChhhHHHHhcCCCCcEEecccCccchhh-HhhccCCcccceEEeccCCC
Q 010711          429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       429 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~  481 (503)
                      .| .+...  ..++.+-+|..||+++|++.... ..+++++|.|+.+.+.+|++
T Consensus       361 ~N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  361 QN-KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hh-hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            44 22221  12333444455555555444432 13444455555555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.90  E-value=1.6e-08  Score=84.73  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=13.0

Q ss_pred             hhcCCCCCEEEcCCCCCcHHHHHH
Q 010711          200 LKGLQKLTLLNLEGCPVTAACLDS  223 (503)
Q Consensus       200 l~~~~~L~~L~l~~~~~~~~~~~~  223 (503)
                      +..+..+..++++||.+......+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~   49 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEE   49 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHH
Confidence            344556666666666665543333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=1.4e-09  Score=72.28  Aligned_cols=61  Identities=34%  Similarity=0.438  Sum_probs=45.6

Q ss_pred             CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711          420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       420 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      |+|++|++++| +++...+..|.++++|+.|++++|.+..+.+..+..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46677777777 77776667777777777777777777777777777778888888877764

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.81  E-value=7.9e-08  Score=80.67  Aligned_cols=227  Identities=21%  Similarity=0.289  Sum_probs=124.4

Q ss_pred             HhhCCCCCCEEEccCCCCChhHHHHHhc----CCCCCEEecCCCccCh---hh-------HHHhhCCCCCCeeeccCCCC
Q 010711          271 HLKGLTNLESLNLDSCGIGDEGLVNLTG----LCNLKCLELSDTQVGS---SG-------LRHLSGLTNLESINLSFTGI  336 (503)
Q Consensus       271 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~---~~-------~~~~~~~~~L~~L~l~~~~~  336 (503)
                      .+.....+..+++++|.++.....++++    -.+|+..++++-..+.   ..       ...+-+||+|+.++++.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            3445778888999999888776666553    3566766665532211   11       23345678888888877755


Q ss_pred             ChHHH----HHHhCCCCCCEeecCCCCCCHhHHHh-------h------cCCCCCCEEEccCCccChHH----HHHHhcC
Q 010711          337 SDGSL----RKLAGLSSLKSLNLDARQITDTGLAA-------L------TSLTGLTHLDLFGARITDSG----AAYLRNF  395 (503)
Q Consensus       337 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------~------~~~~~L~~L~l~~~~~~~~~----~~~~~~~  395 (503)
                      ....+    ..++.-..|+.|.+.+|.+....-..       +      +.-|.|+.+....|++...+    ...+..-
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            54333    33456677777888777664321111       1      13466777777776655432    2223333


Q ss_pred             CCCCeEEecCCCCChhHHHhh-----hcCCCCceeeccCCCCCChhhH----HHHhcCCCCcEEecccCccchhhHhh--
Q 010711          396 KNLRSLEICGGGLTDAGVKHI-----KDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRH--  464 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~--  464 (503)
                      ..|+++.+..|+|...+...+     ..+.+|+.|+|+.| -++....    ..++..+.|++|.+.+|-++..+...  
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence            567777777777655443322     23466667777666 3443322    23334555666666666555443321  


Q ss_pred             --c--cCCcccceEEeccCCCC-----HHHHHHHHhcCCCCcc
Q 010711          465 --L--KPLKNLRSLTLESCKVT-----ANDIKRLQSRDLPNLV  498 (503)
Q Consensus       465 --l--~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~L~  498 (503)
                        +  ...|+|..|-...|.+.     ...+..+....+|-|.
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~  306 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV  306 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence              1  23466666666655322     2233444444454443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.8e-09  Score=91.57  Aligned_cols=130  Identities=23%  Similarity=0.269  Sum_probs=81.6

Q ss_pred             CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEe
Q 010711          227 LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE  306 (503)
Q Consensus       227 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  306 (503)
                      +..|+.+++++|.++.. .+...-.|+++.|+++.|.+....  .+..+++|+.|++++|.++.. ..+-.++.+++.|.
T Consensus       283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence            44566777777666542 234445567777777777665322  256667777777777755432 22223567777777


Q ss_pred             cCCCccChhhHHHhhCCCCCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCH
Q 010711          307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD  362 (503)
Q Consensus       307 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~  362 (503)
                      ++.|.+.+  ...+.++.+|..|++++|++... ....++++|.|+.+.+.+|.+..
T Consensus       359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            77776543  34456667777778877777653 23556778888888888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.73  E-value=5.6e-08  Score=96.66  Aligned_cols=212  Identities=20%  Similarity=0.257  Sum_probs=119.9

Q ss_pred             CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHh--CCCCCC
Q 010711          274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLK  351 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~  351 (503)
                      ..-++..+++.+..........+.+.. |+.+.+++-..........      ..++     +....-..+.  .-.+|+
T Consensus        58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~------~~id-----i~~lL~~~Ln~~sr~nL~  125 (699)
T KOG3665|consen   58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDD------ATID-----IISLLKDLLNEESRQNLQ  125 (699)
T ss_pred             hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhh------hhcc-----HHHHHHHHHhHHHHHhhh
Confidence            334666777776655555555555544 7777776543222110000      0001     1011111111  135677


Q ss_pred             EeecCCCC-CCHhHHHhhc-CCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711          352 SLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (503)
Q Consensus       352 ~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  428 (503)
                      .|++++.. +....+..++ .+|+|+.|.+.+-.+.... .....++|+|..|++++.+++..  ..++.+++|+.|.+.
T Consensus       126 ~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  126 HLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMR  203 (699)
T ss_pred             hcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhcc
Confidence            77776632 2222223333 5677777777775554332 33446677777777777777664  456677777777777


Q ss_pred             CCCCCCh-hhHHHHhcCCCCcEEecccCccchhh--H----hhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711          429 QNCNLTD-KTLELISGLTGLVSLNVSNSRITSAG--L----RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  501 (503)
Q Consensus       429 ~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~  501 (503)
                      +- .+.. .....+-++++|+.||+|..+.....  .    +.-..+|.|+.|+.+|..+...-++.+. ...|+|+.+.
T Consensus       204 nL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll-~sH~~L~~i~  281 (699)
T KOG3665|consen  204 NL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL-NSHPNLQQIA  281 (699)
T ss_pred             CC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH-HhCccHhhhh
Confidence            65 3333 33445667788888888765433221  1    2223578888888888888888887777 5777777664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=4.7e-09  Score=69.70  Aligned_cols=61  Identities=34%  Similarity=0.475  Sum_probs=42.3

Q ss_pred             CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                      |+|++|++++|.+.......|..+++|++|++++| .++...+..|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45667777777666666666667777777777766 66666666777777777777777653

...

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.1e-07  Score=95.02  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711          374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (503)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  453 (503)
                      ++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| +++...|..+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence            344455555444444444455555555555555554444444555555555555555 4444444455555555555555


Q ss_pred             cCccchhhHhhccC-CcccceEEeccC
Q 010711          454 NSRITSAGLRHLKP-LKNLRSLTLESC  479 (503)
Q Consensus       454 ~~~~~~~~~~~l~~-~~~L~~L~l~~~  479 (503)
                      +|.++...|..+.. ..++..+++.+|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCC
Confidence            55554444433322 123444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=8.4e-08  Score=81.62  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             CCCCCCEeecCCCCCCHhH-HHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCChh
Q 010711          346 GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTDA  411 (503)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~  411 (503)
                      .+|++..+.+..+.+.... ...+..+|.+..|+++.+++.+.. ..++..++.|..|.++++.+.+.
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            4688888888888766532 244456677777888877776532 45667888888888888877653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.49  E-value=2.8e-07  Score=91.80  Aligned_cols=141  Identities=25%  Similarity=0.253  Sum_probs=92.7

Q ss_pred             CCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccE
Q 010711           81 SNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES  159 (503)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  159 (503)
                      .+|++|+++|...+....+..++ .+|+|+.|.+.+-....+.......++|+|..||++++ .+... ..+.++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            47888888886555555556665 67888888888765545555666678888888888884 33333 56777888888


Q ss_pred             eeccCCcCCCccccccccCCCCCCEEEeecccCCchh--H----HhhhcCCCCCEEEcCCCCCcHHHHHH
Q 010711          160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG--I----AYLKGLQKLTLLNLEGCPVTAACLDS  223 (503)
Q Consensus       160 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~l~~~~~L~~L~l~~~~~~~~~~~~  223 (503)
                      |.+.+-..........+..+++|+.||++........  .    ..-..+|+|+.||.+++.+.....+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            8877655444445566677888888888755333221  1    11134677888888877776554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.46  E-value=2e-07  Score=88.95  Aligned_cols=177  Identities=36%  Similarity=0.481  Sum_probs=78.7

Q ss_pred             CCCCCCEEEccCCCCChhHHHHHhcC-CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711          274 GLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  352 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  352 (503)
                      ..+.++.+.+.++.+.+..+ ..... ++|+.|+++++.+.... ..+..++.|+.|++.+|.+.+.... .+..+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhh
Confidence            34556666666665543322 22223 25666666666554331 2344555555555555555443221 124455555


Q ss_pred             eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCC
Q 010711          353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  432 (503)
Q Consensus       353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  432 (503)
                      |++++|.+...... ......|+++.+++|..... +..+..+.++..+.+.+|.+... +..+..+++++.|++++| .
T Consensus       191 L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n-~  266 (394)
T COG4886         191 LDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNN-Q  266 (394)
T ss_pred             eeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cchhccccccceeccccc-c
Confidence            55555555543221 11223355555555532111 12233444444444444444331 223334444555555554 3


Q ss_pred             CChhhHHHHhcCCCCcEEecccCccch
Q 010711          433 LTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       433 l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      ++....  +..+.+++.|+++++.+..
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccc
Confidence            443332  3444455555555544443

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=2.5e-07  Score=92.46  Aligned_cols=106  Identities=22%  Similarity=0.333  Sum_probs=75.5

Q ss_pred             CCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711          350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  429 (503)
Q Consensus       350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  429 (503)
                      ++.|+++++.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66677777777766666677777777777777777766666677777777777777777776677777777777777777


Q ss_pred             CCCCChhhHHHHhc-CCCCcEEecccCc
Q 010711          430 NCNLTDKTLELISG-LTGLVSLNVSNSR  456 (503)
Q Consensus       430 ~~~l~~~~~~~~~~-l~~L~~L~l~~~~  456 (503)
                      | .++...|..+.. ..++..+++.+|.
T Consensus       500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 N-SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             C-cccccCChHHhhccccCceEEecCCc
Confidence            7 666666666554 2456667777664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.34  E-value=2.1e-06  Score=84.70  Aligned_cols=62  Identities=34%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             CCCCCCeeeccCCC-CChHHHHHHhC-CCCCCEeecCCCC-CCHhHHHhhc-CCCCCCEEEccCCc
Q 010711          322 GLTNLESINLSFTG-ISDGSLRKLAG-LSSLKSLNLDARQ-ITDTGLAALT-SLTGLTHLDLFGAR  383 (503)
Q Consensus       322 ~~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~L~l~~~~  383 (503)
                      .+++|+.+++.++. +++.....++. |++|+.|.+.++. +++.+...+. .+++|++|++++|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555554 44444444442 5555555554444 4444443332 45555555555553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=2.7e-08  Score=94.94  Aligned_cols=216  Identities=35%  Similarity=0.374  Sum_probs=93.4

Q ss_pred             CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  331 (503)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  331 (503)
                      ..++.+.+..+.+.. ....+..+.+|..+++.++.+..... .+..+++|++|++++|.+...  ..+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            344444444443332 11223445556666666655433211 134455555555555554432  22333444555555


Q ss_pred             cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCCh
Q 010711          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  410 (503)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  410 (503)
                      .+|.+...  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+....  .+..+..+..+++..|.++.
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhccccccee
Confidence            55544432  122234455555555555544322 1 234445555555555443321  11112222222444443332


Q ss_pred             hHHHhhhcCCC--CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          411 AGVKHIKDLSS--LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       411 ~~~~~~~~~~~--L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ..  .+..++.  |+.+++++| .+.... ..+..+..+..+++.++++...  ..+...+.+..+...++++.
T Consensus       223 ~~--~l~~~~~~~L~~l~l~~n-~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  223 LE--GLNELVMLHLRELYLSGN-RISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cc--CcccchhHHHHHHhcccC-cccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            11  1111122  555566655 333221 2344455666666666655443  23334455555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2e-08  Score=95.62  Aligned_cols=105  Identities=29%  Similarity=0.331  Sum_probs=44.4

Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  450 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L  450 (503)
                      +|.++.|+++.|++++..  .+..+++|++|+|+.|.+.....-....+. |..|.++|| .++...  .+.++.+|+-|
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~--gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR--GIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh--hHHhhhhhhcc
Confidence            344444444444444322  344444555555554444332211112222 555555555 333322  33344555555


Q ss_pred             ecccCccchhh-HhhccCCcccceEEeccCCC
Q 010711          451 NVSNSRITSAG-LRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       451 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~  481 (503)
                      |+++|-+.+.. ...+..+..|+.|++.||++
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            55555433321 12223334455555555553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.24  E-value=1.5e-06  Score=83.01  Aligned_cols=179  Identities=23%  Similarity=0.257  Sum_probs=104.7

Q ss_pred             cCCCCCCEEecCCCeecChhhHHHhhCCC-CCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCcc
Q 010711           78 KDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK  156 (503)
Q Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  156 (503)
                      ...+.++.|++.++ .+... +....... +|++|+++++..  ...|..+..+++|+.|++++| .+...+......+.
T Consensus       113 ~~~~~l~~L~l~~n-~i~~i-~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~  187 (394)
T COG4886         113 LELTNLTSLDLDNN-NITDI-PPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSN  187 (394)
T ss_pred             hcccceeEEecCCc-ccccC-ccccccchhhcccccccccch--hhhhhhhhccccccccccCCc-hhhhhhhhhhhhhh
Confidence            34466777777664 33332 22233342 677777777653  334455667777777777774 34444444446677


Q ss_pred             ccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEcc
Q 010711          157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN  236 (503)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  236 (503)
                      |+.|+++++....  .+........|+++.++++... ..+..+..+..+..+.+.++.+... +..+..+++++.|+++
T Consensus       188 L~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s  263 (394)
T COG4886         188 LNNLDLSGNKISD--LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLS  263 (394)
T ss_pred             hhheeccCCcccc--CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccc
Confidence            7777777643222  2222234445777777766322 2234456666666666666665432 3445667778888888


Q ss_pred             CCCCChhhhHhhhcCCCCCEEEccCCCCChH
Q 010711          237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDE  267 (503)
Q Consensus       237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  267 (503)
                      ++.+.....  +....+++.++++++.+...
T Consensus       264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         264 NNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccccccc--ccccCccCEEeccCcccccc
Confidence            877765433  66777888888877766543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.21  E-value=4.7e-06  Score=82.18  Aligned_cols=82  Identities=32%  Similarity=0.432  Sum_probs=40.4

Q ss_pred             CCCCCCEEEccCCC-CChhHHHHHhc-CCCCCEEecCCCc-cChhhHHH-hhCCCCCCeeeccCCCC-ChHHHH-HHhCC
Q 010711          274 GLTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLELSDTQ-VGSSGLRH-LSGLTNLESINLSFTGI-SDGSLR-KLAGL  347 (503)
Q Consensus       274 ~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~-~~~~~  347 (503)
                      .+++|+.++++++. +++.....+.. +++|+.|.+..+. +.+.+... ...++.|++|++++|.. ++.... ....+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            44566666666664 45444444443 5566666655554 34433332 23456666666666532 222222 22245


Q ss_pred             CCCCEeec
Q 010711          348 SSLKSLNL  355 (503)
Q Consensus       348 ~~L~~L~l  355 (503)
                      ++++.+.+
T Consensus       321 ~~l~~l~~  328 (482)
T KOG1947|consen  321 PNLRELKL  328 (482)
T ss_pred             cchhhhhh
Confidence            55555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=4.6e-06  Score=71.32  Aligned_cols=155  Identities=24%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             CCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCHhHH---HhhcCCCCCCEEEccCCccChHH--HHHHhcCCCC
Q 010711          325 NLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGL---AALTSLTGLTHLDLFGARITDSG--AAYLRNFKNL  398 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L  398 (503)
                      +|+.+.+.+..+.-. ....+..+|.++.|.++.|.......   ..-...+.+.+++...|....-.  ...-..+|++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            455555555444321 12233455666666666653221111   11113346666776666432211  1122447888


Q ss_pred             CeEEecCCCCChhH-HHhhhcCCCCceeeccCCCCCChh-hHHHHhcCCCCcEEecccCccchhhHhh------ccCCcc
Q 010711          399 RSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGLRH------LKPLKN  470 (503)
Q Consensus       399 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~------l~~~~~  470 (503)
                      ..+-++.|.+.+.. -.....+|.+..|+++.+ ++... ..+.+.+++.|..|.++++++.+..-.+      ...+++
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            88888888775533 234455677778888888 56654 4567888999999999999887743211      134566


Q ss_pred             cceEEeccCCCC
Q 010711          471 LRSLTLESCKVT  482 (503)
Q Consensus       471 L~~L~l~~~~~~  482 (503)
                      ++.|+  |-+|+
T Consensus       281 v~vLN--GskIs  290 (418)
T KOG2982|consen  281 VQVLN--GSKIS  290 (418)
T ss_pred             eEEec--Ccccc
Confidence            66653  33554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.14  E-value=1.6e-07  Score=89.63  Aligned_cols=243  Identities=28%  Similarity=0.333  Sum_probs=162.9

Q ss_pred             CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (503)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  305 (503)
                      .+..++.+.+..+.+.. ....+..+.+++.+++..|.+.... ..+..+++|+.|+++++.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            44556666666666553 2234667889999999998876432 2267789999999999988754  345567779999


Q ss_pred             ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCcc
Q 010711          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  384 (503)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (503)
                      ++.+|.+...  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.....  +..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccc
Confidence            9999987653  344557889999999998876554 2 4678999999999998876322  22233344446666666


Q ss_pred             ChHHHHHHhcCC--CCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhh-
Q 010711          385 TDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG-  461 (503)
Q Consensus       385 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-  461 (503)
                      .....  +...+  +|+.+++++|++.... ..+..++.+..|++.++ .+....  .+...+.+..+....+.+.... 
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  294 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISNLE--GLERLPKLSELWLNDNKLALSEA  294 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccccc--cccccchHHHhccCcchhcchhh
Confidence            54321  12223  3889999999887642 44556788888888887 444422  2344556666666666655221 


Q ss_pred             --H-hhccCCcccceEEeccCCCCH
Q 010711          462 --L-RHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       462 --~-~~l~~~~~L~~L~l~~~~~~~  483 (503)
                        . ......++++.+.+.++++..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  295 ISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             hhccccccccccccccccccCcccc
Confidence              1 124567889999999887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=8.7e-08  Score=91.42  Aligned_cols=127  Identities=28%  Similarity=0.341  Sum_probs=71.5

Q ss_pred             CCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecC
Q 010711          326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  405 (503)
Q Consensus       326 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  405 (503)
                      |...++++|.+.. ....+.-++.++.|++++|++++.  +.+..++.|++|++++|.+...+.-....|. |+.|.+++
T Consensus       166 L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            4444455554432 223344456677777777777663  3555667777777777766554432233344 77777777


Q ss_pred             CCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccch
Q 010711          406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       406 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      |.++..  ..+.++.+|..||+++| -+.+.. ...+..+..|+.|.|.||++.-
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            766542  34455667777777776 333321 2233445667777777776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.04  E-value=1.6e-07  Score=87.14  Aligned_cols=171  Identities=20%  Similarity=0.215  Sum_probs=90.1

Q ss_pred             EEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCC
Q 010711          280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ  359 (503)
Q Consensus       280 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  359 (503)
                      ..+++.+++... +..+..+..|+.+.+..|.+... +..+.++..|+.++++.|+++.. +..+..+ -|+.|.+++|+
T Consensus        79 ~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~l-pLkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFSEL-PEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHL-PDGLCDL-PLKVLIVSNNK  154 (722)
T ss_pred             hhhccccccccC-chHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcC-ChhhhcC-cceeEEEecCc
Confidence            345555544432 22233333444455544443322 33445556666666666655432 2223333 36666666666


Q ss_pred             CCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHH
Q 010711          360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  439 (503)
Q Consensus       360 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  439 (503)
                      ++.. +..++..+.|..|+.+.|.+...+ ..+..+.+|+.|.+..|.+.... ..+.. -.|..||++.| ++.. .|.
T Consensus       155 l~~l-p~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp-~El~~-LpLi~lDfScN-kis~-iPv  228 (722)
T KOG0532|consen  155 LTSL-PEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLP-EELCS-LPLIRLDFSCN-KISY-LPV  228 (722)
T ss_pred             cccC-CcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCC-HHHhC-CceeeeecccC-ceee-cch
Confidence            6653 233445566666666666665543 34455666666666666655542 33332 34556666666 5554 344


Q ss_pred             HHhcCCCCcEEecccCccchh
Q 010711          440 LISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       440 ~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      .|..+..|++|-|.+|++..-
T Consensus       229 ~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhhheeeeeccCCCCCC
Confidence            566666666666666666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.03  E-value=1.6e-07  Score=87.20  Aligned_cols=16  Identities=44%  Similarity=0.590  Sum_probs=6.1

Q ss_pred             hhcCCCCCEEEccCCC
Q 010711          248 FSKIGSLKVLNLGFNE  263 (503)
Q Consensus       248 l~~~~~L~~L~l~~~~  263 (503)
                      |.++..|++|.+.+|+
T Consensus       230 fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhhheeeeeccCC
Confidence            3333333333333333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.00  E-value=2.9e-06  Score=68.30  Aligned_cols=106  Identities=19%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcE
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS  449 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~  449 (503)
                      ......+++++|.+...  ..|.+++.|..|.+.+|.|+.+.+..-.-+|.|+.|.+.+| ++.... .+.+..||+|+.
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence            34667788888877654  34677888889999999888876665556688899999888 555532 456677889999


Q ss_pred             EecccCccchhhH---hhccCCcccceEEeccC
Q 010711          450 LNVSNSRITSAGL---RHLKPLKNLRSLTLESC  479 (503)
Q Consensus       450 L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~  479 (503)
                      |.+-+|++.+..-   ..+..+|+|+.|+.++=
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            9999888776543   23467888898888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=3e-05  Score=46.79  Aligned_cols=36  Identities=33%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             CCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       446 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +|++|++++|+++++++ .+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence            55666666666665432 3556666666666666655

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=3.6e-06  Score=63.29  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=82.0

Q ss_pred             CCCCEeecCCCCCCHh--HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCcee
Q 010711          348 SSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  425 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  425 (503)
                      ..+..++++.|++...  .+..+..-..|+..++++|.+.+.++..-..+|.++.+++++|.+.+.. ..+..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhc
Confidence            4566778888876632  2234445567788899999888877666677788899999999888864 448888999999


Q ss_pred             eccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711          426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  463 (503)
Q Consensus       426 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  463 (503)
                      ++++| .+.. .+..+..+.++-.|+..+|....+..+
T Consensus       106 Nl~~N-~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  106 NLRFN-PLNA-EPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccccC-cccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence            99988 4444 334455578888888888877666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=8.3e-06  Score=65.83  Aligned_cols=83  Identities=33%  Similarity=0.490  Sum_probs=52.8

Q ss_pred             CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc-CCCCcEEecccC-ccchhhHhhccCCcccceEE
Q 010711          398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLT  475 (503)
Q Consensus       398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~  475 (503)
                      ++.++.+++.|...+.+.+..+++++.|.+.+|.++.+...+.+++ .++|+.|+|++| +|++.+...+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4455555666666666666666666666666666666655555554 466777777766 56666666666677777776


Q ss_pred             eccCC
Q 010711          476 LESCK  480 (503)
Q Consensus       476 l~~~~  480 (503)
                      |.+=+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            66643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=2.9e-05  Score=62.70  Aligned_cols=108  Identities=21%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH-HHhhhcCCCCcee
Q 010711          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLL  425 (503)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  425 (503)
                      ..+...+++.+|.+..  .+.|..+++|.+|.+.+|+++...+..-..+|+|..|.+.+|.|...+ ..-+..||.|+.|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3567778888887766  456778888999999999888877666566888999999988876543 2345667888888


Q ss_pred             eccCCCCCChhhH---HHHhcCCCCcEEecccCcc
Q 010711          426 NLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       426 ~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~  457 (503)
                      .+-+| .++....   .++..+|+|+.||...-..
T Consensus       119 tll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence            88888 3443322   2456788999998886543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=4.9e-05  Score=45.87  Aligned_cols=37  Identities=41%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       421 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      +|++|++++| +++...+ .+.++++|+.|++++|++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            4555555555 5554332 35556666666666665554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.69  E-value=1.9e-05  Score=61.93  Aligned_cols=105  Identities=21%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             hcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711          368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  447 (503)
Q Consensus       368 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L  447 (503)
                      |..+++|+.+.+.. .+.......|..+++|+.+.+.++ +...+...|..+++++.+.+.+  .+.......|..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccc
Confidence            44445555555543 233334444555555666665543 4444444555555566666643  2333333455556666


Q ss_pred             cEEecccCccchhhHhhccCCcccceEEecc
Q 010711          448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLES  478 (503)
Q Consensus       448 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  478 (503)
                      +.+++..+ +..+....+..+ +|+.+.+.+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            66666543 444444555555 666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=7.3e-06  Score=69.45  Aligned_cols=100  Identities=21%  Similarity=0.223  Sum_probs=59.9

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH-HHhhhcCCCCceee
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN  426 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  426 (503)
                      .+.+.|+++++.+++.  .....||.|+.|.++-|.++...  .+..|.+|++|.|..|.|.+.. ...+.++|+|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4556666677666663  33456777777777777666543  3556777777777777665532 34556667777777


Q ss_pred             ccCCCCCChhhH----HHHhcCCCCcEEe
Q 010711          427 LSQNCNLTDKTL----ELISGLTGLVSLN  451 (503)
Q Consensus       427 l~~~~~l~~~~~----~~~~~l~~L~~L~  451 (503)
                      |..|+--.....    ..+.-+|+|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            776643332222    2344566666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.67  E-value=1e-05  Score=60.84  Aligned_cols=111  Identities=20%  Similarity=0.205  Sum_probs=65.5

Q ss_pred             CCeeeccCCCCCh--HHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711          326 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  403 (503)
Q Consensus       326 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  403 (503)
                      +..++++.|.+..  ..+..+.....|+..++++|.+.+.+...-..+|..+.+++.+|.+.+.+.. +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            4445555554432  1233444556666677777777666555445666777777777777666544 667777777777


Q ss_pred             cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHH
Q 010711          404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE  439 (503)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  439 (503)
                      +.|.+... +..+..+.++..|+..+| ....++.+
T Consensus       108 ~~N~l~~~-p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  108 RFNPLNAE-PRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             ccCccccc-hHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            77766553 333444666666666666 44444433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.64  E-value=2.1e-05  Score=61.67  Aligned_cols=100  Identities=21%  Similarity=0.306  Sum_probs=32.3

Q ss_pred             HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711          366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  445 (503)
Q Consensus       366 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~  445 (503)
                      ..|..+++|+.+.+.++ +...+...|.++++++.+.+.+ .+...+...|..++.|+.+.+..+  +.......|.++ 
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-  103 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-  103 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-
Confidence            33444444444444432 3333333444444455555433 222222334444455555554332  333333344444 


Q ss_pred             CCcEEecccCccchhhHhhccCCccc
Q 010711          446 GLVSLNVSNSRITSAGLRHLKPLKNL  471 (503)
Q Consensus       446 ~L~~L~l~~~~~~~~~~~~l~~~~~L  471 (503)
                      +|+.+.+.. .+..+....+.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            555555443 3333333444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=6.3e-05  Score=60.88  Aligned_cols=83  Identities=33%  Similarity=0.435  Sum_probs=63.2

Q ss_pred             eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhC-CCCCCEEEcCCCccccHHHHHHHhCCCCCcEEe
Q 010711           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD  137 (503)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  137 (503)
                      +..++-++..++.+....+.+++.++.|.+.+|..+.+...+-++. .++|+.|++++|+.+++.+...+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            5667777777777777777788888888888887777777766664 468888888888878887788888888888887


Q ss_pred             ccCc
Q 010711          138 LERC  141 (503)
Q Consensus       138 l~~~  141 (503)
                      +.+-
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            7763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=3.1e-05  Score=65.76  Aligned_cols=109  Identities=20%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcE
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS  449 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~  449 (503)
                      +.+.+.|++.+|.+.+..  ....++.|+.|.|+-|.|+..  ..+..|+.|+.|.|..| .+.+.. ...+.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence            446677888888887753  346788888888888888764  44667888888888887 566543 356778888888


Q ss_pred             EecccCccchhhH-----hhccCCcccceEEeccC-CCCHHHHH
Q 010711          450 LNVSNSRITSAGL-----RHLKPLKNLRSLTLESC-KVTANDIK  487 (503)
Q Consensus       450 L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~-~~~~~~~~  487 (503)
                      |=|..|+.....+     ..+..+|+|+.|   +| +.++..++
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL---Dnv~VteeEle  133 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKL---DNVPVTEEELE  133 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhc---cCccccHHHHH
Confidence            8888776554333     234557777777   34 56655543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=0.0001  Score=62.39  Aligned_cols=87  Identities=23%  Similarity=0.321  Sum_probs=42.2

Q ss_pred             hcCCCCCCEEEccCC--ccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceeeccCCCC--CChhhHHHHh
Q 010711          368 LTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCN--LTDKTLELIS  442 (503)
Q Consensus       368 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~  442 (503)
                      +..+|+|+.|.++.|  ++..........+|+|+++++++|+|... ....+..+++|..|++.+|.-  +...-...|.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            334555555555555  33322222223456666666666665531 122334455666666666631  2222223455


Q ss_pred             cCCCCcEEeccc
Q 010711          443 GLTGLVSLNVSN  454 (503)
Q Consensus       443 ~l~~L~~L~l~~  454 (503)
                      -+++|+.|+-..
T Consensus       141 ll~~L~~LD~~d  152 (260)
T KOG2739|consen  141 LLPSLKYLDGCD  152 (260)
T ss_pred             Hhhhhccccccc
Confidence            566666665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.14  E-value=0.0016  Score=60.26  Aligned_cols=12  Identities=17%  Similarity=0.188  Sum_probs=6.3

Q ss_pred             CCCCCEEecCCC
Q 010711           80 CSNLQSLDFNFC   91 (503)
Q Consensus        80 ~~~L~~L~l~~~   91 (503)
                      ++++++|++++|
T Consensus        51 ~~~l~~L~Is~c   62 (426)
T PRK15386         51 ARASGRLYIKDC   62 (426)
T ss_pred             hcCCCEEEeCCC
Confidence            455555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00023  Score=60.32  Aligned_cols=106  Identities=23%  Similarity=0.281  Sum_probs=70.1

Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCC--CCChhHHHhhhcCCCCceeeccCCCCCChh-hHHHHhcCCCC
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG--GLTDAGVKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGL  447 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L  447 (503)
                      ...|+.+++.++.++..  ..+..+|+|+.|.++.|  .+..........+|+|+++++++| ++... ....+..+++|
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence            34556666666655543  34556889999999998  444333334455699999999999 66642 23456678889


Q ss_pred             cEEecccCccchhh---HhhccCCcccceEEeccC
Q 010711          448 VSLNVSNSRITSAG---LRHLKPLKNLRSLTLESC  479 (503)
Q Consensus       448 ~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~  479 (503)
                      +.|++.+|..+...   ...+.-+|+|.+|+-.+.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            99999988655422   244566788888765443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.60  E-value=0.0059  Score=56.62  Aligned_cols=139  Identities=18%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             HHhhCCCCCCeeeccCCCCChHHHHHHhCC-CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCC-ccChHHHHHHhcC
Q 010711          318 RHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA-RITDSGAAYLRNF  395 (503)
Q Consensus       318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~  395 (503)
                      .-+..+.+++.|++++|.+....     .+ ++|++|.+.++.--...+..+  .++|+.|.+++| .+...       .
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P  111 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------P  111 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------c
Confidence            34556789999999999776532     23 469999998853322223333  358999999998 44321       3


Q ss_pred             CCCCeEEecCCCCChhHHHhhhcC-CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceE
Q 010711          396 KNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL  474 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  474 (503)
                      ++|+.|++.++.....     ..+ ++|+.|.+.++.......... .-.++|+.|++++|..... |..++  .+|+.|
T Consensus       112 ~sLe~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk~L  182 (426)
T PRK15386        112 ESVRSLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIIL-PEKLP--ESLQSI  182 (426)
T ss_pred             cccceEEeCCCCCccc-----ccCcchHhheecccccccccccccc-ccCCcccEEEecCCCcccC-ccccc--ccCcEE
Confidence            5688888876554321     111 345555554321111100000 0114566666666654332 22222  355555


Q ss_pred             EeccC
Q 010711          475 TLESC  479 (503)
Q Consensus       475 ~l~~~  479 (503)
                      +++.+
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            55443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.36  E-value=0.00066  Score=65.16  Aligned_cols=201  Identities=30%  Similarity=0.413  Sum_probs=107.6

Q ss_pred             CCEEEccCCCCChhH----HHHHhcCCCCCEEecCCCccChhhHHHhh----CC-CCCCeeeccCCCCChHHH----HHH
Q 010711          278 LESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGSL----RKL  344 (503)
Q Consensus       278 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~----~~~  344 (503)
                      +..+.+.+|.+.+..    ...+...+.|+.|++++|.+.+.....+.    .. ..++.|.+..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777665433    33445567888888888887765444332    22 345667776676654332    334


Q ss_pred             hCCCCCCEeecCCCCCCHhHH----Hhhc----CCCCCCEEEccCCccChHHHH----HHhcCCC-CCeEEecCCCCChh
Q 010711          345 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA  411 (503)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~~~  411 (503)
                      .....++.+++..|.+...+.    ..+.    ...++++|.+++|.++.....    .+...++ +.+++++.|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            456677777777776643322    2222    245666777777766643322    2233444 55566666666655


Q ss_pred             HHHhh----hcC-CCCceeeccCCCCCChhhH----HHHhcCCCCcEEecccCccchhhH----hhccCCcccceEEecc
Q 010711          412 GVKHI----KDL-SSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLES  478 (503)
Q Consensus       412 ~~~~~----~~~-~~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~  478 (503)
                      +...+    ..+ +.++.++++.| .++....    +.+..++.++++.++.|++.+...    ..+.....+..+.+.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~  327 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG  327 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence            33322    222 44566666666 4444322    233345566666666666555433    2223334444444443


Q ss_pred             C
Q 010711          479 C  479 (503)
Q Consensus       479 ~  479 (503)
                      +
T Consensus       328 ~  328 (478)
T KOG4308|consen  328 T  328 (478)
T ss_pred             c
Confidence            3

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.18  E-value=0.00066  Score=65.16  Aligned_cols=187  Identities=28%  Similarity=0.369  Sum_probs=128.0

Q ss_pred             CCEEecCCCccChhhH----HHhhCCCCCCeeeccCCCCChHHHHHHhC----C-CCCCEeecCCCCCCHhHH----Hhh
Q 010711          302 LKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSLRKLAG----L-SSLKSLNLDARQITDTGL----AAL  368 (503)
Q Consensus       302 L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~-~~L~~L~l~~~~~~~~~~----~~~  368 (503)
                      +..+.+.+|.+.+...    ..+...+.|..|++++|.+.+.....+..    . ..+++|.+..|.++..+.    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777777665433    34567789999999999888766555442    1 456778888887776543    445


Q ss_pred             cCCCCCCEEEccCCccChHH----HHHHh----cCCCCCeEEecCCCCChhHHH----hhhcCCC-CceeeccCCCCCCh
Q 010711          369 TSLTGLTHLDLFGARITDSG----AAYLR----NFKNLRSLEICGGGLTDAGVK----HIKDLSS-LTLLNLSQNCNLTD  435 (503)
Q Consensus       369 ~~~~~L~~L~l~~~~~~~~~----~~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~l~~  435 (503)
                      ...+.++.++++.|.+...+    +..+.    ...++++|++.++.++...-.    .+...+. +..+++.+| .+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN-KLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc-Ccch
Confidence            56788888999888775433    22333    356788899998887754432    2333455 667888888 5665


Q ss_pred             hhH----HHHhcC-CCCcEEecccCccchhhH----hhccCCcccceEEeccCCCCHHHHHHH
Q 010711          436 KTL----ELISGL-TGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRL  489 (503)
Q Consensus       436 ~~~----~~~~~l-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~  489 (503)
                      ...    ..+..+ +.++.++++.|.+.+...    +.+..+++++.+.++.|+++..+.+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~  310 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL  310 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence            422    334445 678999999999887655    445677899999999998887765543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.62  E-value=0.024  Score=28.84  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=12.8

Q ss_pred             CcccceEEeccCCCCHHHHHHH
Q 010711          468 LKNLRSLTLESCKVTANDIKRL  489 (503)
Q Consensus       468 ~~~L~~L~l~~~~~~~~~~~~~  489 (503)
                      +++|+.|+|++|+|+..+.+.+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3566777777777776666654

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.01  E-value=0.064  Score=27.91  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=18.3

Q ss_pred             CcccceEEeccC-CCCHHHHHHHH
Q 010711          468 LKNLRSLTLESC-KVTANDIKRLQ  490 (503)
Q Consensus       468 ~~~L~~L~l~~~-~~~~~~~~~~~  490 (503)
                      +++|++|++++| .+++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            578888888888 68888887764

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.84  E-value=0.065  Score=27.90  Aligned_cols=23  Identities=48%  Similarity=0.931  Sum_probs=11.9

Q ss_pred             CCCCCEEecCCCeecChhhHHHh
Q 010711           80 CSNLQSLDFNFCIQISDGGLEHL  102 (503)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~  102 (503)
                      |++|++|++++|..+++.+...+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            34555555555555555444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.36  E-value=0.033  Score=27.62  Aligned_cols=15  Identities=33%  Similarity=0.425  Sum_probs=9.1

Q ss_pred             CCcEEecccCccchh
Q 010711          446 GLVSLNVSNSRITSA  460 (503)
Q Consensus       446 ~L~~L~l~~~~~~~~  460 (503)
                      +|+.|+|++|+++.+
T Consensus         1 ~L~~Ldls~n~l~~i   15 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSI   15 (22)
T ss_dssp             TESEEEETSSEESEE
T ss_pred             CccEEECCCCcCEeC
Confidence            356666666666643

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.10  E-value=0.053  Score=24.89  Aligned_cols=12  Identities=42%  Similarity=0.731  Sum_probs=4.0

Q ss_pred             CCcEEecccCcc
Q 010711          446 GLVSLNVSNSRI  457 (503)
Q Consensus       446 ~L~~L~l~~~~~  457 (503)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.57  E-value=0.081  Score=26.86  Aligned_cols=17  Identities=35%  Similarity=0.702  Sum_probs=6.6

Q ss_pred             CCCeEEecCCCCChhHH
Q 010711          397 NLRSLEICGGGLTDAGV  413 (503)
Q Consensus       397 ~L~~L~l~~~~~~~~~~  413 (503)
                      +|++|++++|.+++.+.
T Consensus         3 ~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    3 NLETLDLSNNQITDEGA   19 (24)
T ss_dssp             T-SEEE-TSSBEHHHHH
T ss_pred             CCCEEEccCCcCCHHHH
Confidence            44444444444444333

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.68  E-value=0.36  Score=25.63  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=16.9

Q ss_pred             cccceEEeccCCCCHHHHHHHH
Q 010711          469 KNLRSLTLESCKVTANDIKRLQ  490 (503)
Q Consensus       469 ~~L~~L~l~~~~~~~~~~~~~~  490 (503)
                      ++|++|+|++|.++..|...+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            5678888888888888777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.62  E-value=0.36  Score=25.00  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=11.3

Q ss_pred             CCCcEEecccCccchhhHhh
Q 010711          445 TGLVSLNVSNSRITSAGLRH  464 (503)
Q Consensus       445 ~~L~~L~l~~~~~~~~~~~~  464 (503)
                      ++|+.|++++|.+..+++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.62  E-value=0.36  Score=25.00  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=11.3

Q ss_pred             CCCcEEecccCccchhhHhh
Q 010711          445 TGLVSLNVSNSRITSAGLRH  464 (503)
Q Consensus       445 ~~L~~L~l~~~~~~~~~~~~  464 (503)
                      ++|+.|++++|.+..+++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	503
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		4e-11
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-11
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-10
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-10
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-10
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		5e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-04
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		6e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-04

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 129/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 96  QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 148
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ LN  + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 149 GLTSLQQLN--FGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 197
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 253
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 254 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 309
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 310 TLYFNNISD--ISPVSSLTKLQRL 331

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 101 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 153
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 154 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 202
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 258
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 259 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 314
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 315 TLYFNNISD--ISPVSSLTKLQRL 336

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 31/264 (11%)
Query: 93  QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK 152
           QI+D  +  L  L+NLT L+   NN IT   +     L NL +L+L   T     +  L 
Sbjct: 100 QIAD--ITPLANLTNLTGLTLF-NNQIT--DIDPLKNLTNLNRLELSSNTI--SDISALS 152
Query: 153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXE 212
           GL  L+ L   + N +TD  +KPL+ LT L+ L IS +KV+D  +              E
Sbjct: 153 GLTSLQQL--SFGNQVTD--LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLE 201
Query: 213 GCPVTAACLDSLSALG---SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
               T   +  ++ LG   +L  L+LN  QL D G    + + +L  L+L  N+I++  L
Sbjct: 202 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN--L 257
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L GLT L  L L +  I +  +  L GL  L  LEL++ Q+    +  +S L NL  +
Sbjct: 258 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPISNLKNLTYL 313
Query: 330 NLSFTGISDGSLRKLAGLSSLKSL 353
            L F  ISD  +  ++ L+ L+ L
Sbjct: 314 TLYFNNISD--ISPVSSLTKLQRL 335

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L     T  +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGL-----TLFNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 45/271 (16%)
Query: 92  IQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLV 149
           I  S+  L  +  L NLT L      NN I    +   A L NL  L L      +  + 
Sbjct: 68  INFSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTNLTGLTL-----FNNQIT 120
Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXX 209
           ++  L  L +LN    +  T SD+  LSGLT+L+ L  S ++VTD               
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD--------------- 165
Query: 210 XXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
                      L  L+ L +L  L+++  ++SD      +K+ +L+ L    N+I+D  +
Sbjct: 166 -----------LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--I 210
Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  LTNL+ L+L+   + D G   L  L NL  L+L++ Q+  S L  LSGLT L  +
Sbjct: 211 TPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI--SNLAPLSGLTKLTEL 266
Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            L    IS+  +  LAGL++L +L L+  Q+
Sbjct: 267 KLGANQISN--ISPLAGLTALTNLELNENQL 295

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 47/303 (15%)
Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS--FRRNNAITAQGMKAFAGLINLVKLDL 138
           +NL+ L+ N   QI+D     +  LSNL  L+  +   N IT   + A   L NL +L L
Sbjct: 66  TNLEYLNLNGN-QITD-----ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117
Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGI 197
                    +  L  L K  SLN+   + +  SD+ PLS  T L  L ++ SKV D + I
Sbjct: 118 NEDNI--SDISPLANLTKXYSLNLGANHNL--SDLSPLSNXTGLNYLTVTESKVKDVTPI 173
Query: 198 AYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKV 256
           A             +   ++      L++L SL Y      Q++D       +++ SLK+
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQITDITPVANXTRLNSLKI 228
Query: 257 -------------------LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
                              L +G N+I+D   V  K LT L+ LN+ S  I D  ++N  
Sbjct: 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAV--KDLTKLKXLNVGSNQISDISVLN-- 284
Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 357
            L  L  L L++ Q+G+     + GLTNL ++ LS   I+D  +R LA LS   S +  A
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IRPLASLSKXDSADF-A 341
Query: 358 RQI 360
            Q+
Sbjct: 342 NQV 344

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 335
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 376
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 377 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 340
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 341 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 381
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 382 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 111/290 (38%), Gaps = 67/290 (23%)
Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
           F   N I      +  GL N+  L+L+R        ++L  L K++  + +W  C+   +
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS--ISLASLPKIDDFSFQWLKCLEHLN 345
Query: 173 MK----P------LSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLD 222
           M+    P       +GL NLK L +S S  +   +                   T     
Sbjct: 346 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-------------------TNETFV 386
Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTN---- 277
           SL A   L  LNL + ++S    + FS +G L+VL+LG NEI  E      +GL N    
Sbjct: 387 SL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 278 --------------------LESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSS 315
                               L+ L L    +   D        L NL  L+LS+  + + 
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 316 GLRHLSGLTNLESINLSFTGISD--------GSLRKLAGLSSLKSLNLDA 357
               L GL  LE ++L    ++         G +  L GLS L  LNL++
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 170 DSDMKPLSG---LTNLKSLQISCSKVTD-SGIAYXXXXXXXXXXXXEGCPVTAACLDSLS 225
           +SD+K + G   L NL SL +S +++TD S I Y            +   +    L +L 
Sbjct: 53  NSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKP--LANLK 110
Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            LG LF L+ N+ +      +           N G ++I    LVHL     LESL L +
Sbjct: 111 NLGWLF-LDENKVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLP---QLESLYLGN 163
Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
             I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++ LS   ISD  LR LA
Sbjct: 164 NKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALA 217
Query: 346 GLSSLKSLNLDARQ 359
           GL +L  L L +++
Sbjct: 218 GLKNLDVLELFSQE 231

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 164
           L NL +L  R +N +    +  F GL NL KLD+         +V L   M  +  N+K 
Sbjct: 79  LFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISE-----NKIVILLDYMFQDLYNLKS 132
Query: 165 CNCITDSDM-----KPLSGLTNLKSLQISCSKVTDSGIAYXXXXXXXXXXXXEGCPVTAA 219
              + D+D+     +  SGL +L+ L +                        E C +T+ 
Sbjct: 133 LE-VGDNDLVYISHRAFSGLNSLEQLTL------------------------EKCNLTSI 167
Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG----FNEITDECLVHLKGL 275
             ++LS L  L  L L    ++      F ++  LKVL +      + +T  CL  L   
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--- 224
Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            NL SL++  C +     + +  L  L+ L LS   + +     L  L  L+ I L    
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 336 ISDGSLRKLAGLSSLKSLNLDARQI 360
           ++        GL+ L+ LN+   Q+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQL 308

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 69/323 (21%)
Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
            +NL  LD ++   + D G      L +L  LS   NN I     ++F GL NL  L L+
Sbjct: 247 WTNLTQLDLSYN-NLHDVGNGSFSYLPSLRYLSLEYNN-IQRLSPRSFYGLSNLRYLSLK 304
Query: 140 RCTRIHGGLVNLKGLMKLESLNIKWC----------NCITDSDMKPLSGLTNLKSLQISC 189
           R        V+L     ++  + +W           N I  +     +GL +LK L +S 
Sbjct: 305 RAFTKQS--VSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
Query: 190 SKVTDSGIAYXXXXXXXXXXXXEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
           +  +   +                   T     SL A   L  LNL +  +S      FS
Sbjct: 363 TFTSLQTL-------------------TNETFVSL-AHSPLLTLNLTKNHISKIANGTFS 402
Query: 250 KIGSLKVLNLGFNEITDECL-VHLKGLTNL--------ESLNLDSCGIG----------- 289
            +G L++L+LG NEI  +      +GL N+        + L L +               
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 290 -------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD---- 338
                  D        L NL  L+LS+  + +     L GL NLE ++     ++     
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 339 ----GSLRKLAGLSSLKSLNLDA 357
               G +  L GLS L  LNL++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLES 545

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-30
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-30
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-16
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-22
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-10
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  190 bits (483), Expect = 8e-54
 Identities = 95/514 (18%), Positives = 169/514 (32%), Gaps = 73/514 (14%)

Query: 10  IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
              + +  R   L  + L+     A+ +L    + G    W+  I++    L SV     
Sbjct: 63  ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122

Query: 68  DVTDSGLIHL--KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMK 125
            V+D  L  L      +L++L  + C   +  GL  +                       
Sbjct: 123 IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----------------------- 159

Query: 126 AFAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC--ITDSDMKPL-SG 178
                  +  L +E  +        L    +    LE LN        I+  D++ +   
Sbjct: 160 -VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 179 LTNLKSLQIS-CSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +L S+++     +   G       L++    +L           +L     L  L L+
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 237 RCQLSDDGCEKFSKIG-SLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
                 +           ++ L+L +    T++    ++   NLE L   +  IGD GL 
Sbjct: 279 YM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE 335

Query: 295 NLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKS 352
            L   C  LK L              +    + + +      +S   L  LA G   L+ 
Sbjct: 336 VLAQYCKQLKRL-------------RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 353 LNLDARQITDTGLAAL-TSLTGLTHLDLFG----ARITDSG-----AAYLRNFKNLRSLE 402
           + +    IT+  L ++ T L  L    L       RITD        + L   K LR   
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

Query: 403 I--CGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 458
                GGLTD G+ +I +   ++  + L      +D+ L E   G   L  L +     +
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLG-YVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 459 SAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQS 491
              +      L +LR L ++  + +      +Q 
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  141 bits (357), Expect = 2e-36
 Identities = 74/425 (17%), Positives = 147/425 (34%), Gaps = 44/425 (10%)

Query: 33  LQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL----KDCSNLQSLDF 88
           L+ L L +  G     +  I +    + ++ +  S  ++     L    +  ++L+ L+F
Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNF 199

Query: 89  NF--CIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH 145
                 +IS   LE + R   +L S+       +   G   F    NL +          
Sbjct: 200 YMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF--FKAAANLEEFCGGSLNEDI 257

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQIS-CSKVTDSGIAYLKGL 203
           G       L+    L     + +  ++M  L      ++ L +      T+     ++  
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317

Query: 204 QKLTLLNLEGCPVTAACLDSLSALGS-LFYLNLNRCQLSDDGCEKFSKIG---------- 252
             L +L      +    L+ L+     L  L + R        ++   +           
Sbjct: 318 PNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 253 --SLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSC-GIGDEGLVN-----LTGLC 300
              L+ + +  ++IT+E L  +    K L +   + LD    I D  L N     L G  
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 301 NLKCLELSD--TQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLD 356
            L+          +   GL ++     N+  + L + G SD  L + + G  +L+ L + 
Sbjct: 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 357 ARQITDTGLAAL-TSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICG-GGLTDA 411
               ++  +AA  T L  L +L + G R + +G   +   R + N+  +       +   
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556

Query: 412 GVKHI 416
           G    
Sbjct: 557 GEIRE 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  122 bits (307), Expect = 7e-30
 Identities = 81/455 (17%), Positives = 152/455 (33%), Gaps = 61/455 (13%)

Query: 101 HLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------H 145
               + + T          TA   +      NL  L L+   R                 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQIS-CSKVTDSGIAYL-K 201
                   L +L+S++ +    ++D D+  L  +   +L++L++  CS  T  G+  +  
Sbjct: 103 WVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC---QLSDDGCEKFSKIG-S 253
             +K+  L +E    +      L  L     SL  LN       ++S    E  ++   S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 254 LKVLNL-GFNEITDECLVH-LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           L  + +  F  +           L      +L+      E  +NL     L  L LS   
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-- 279

Query: 312 VGSSGLRHL-SGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
           +G + +  L      +  ++L +    ++     +    +L+ L      I D GL  L 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 370 SL-TGLTHLDLFG-----------ARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI 416
                L  L +               ++  G   L +  + L  + +    +T+  ++ I
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 417 ----KDLSSLTLLNLSQNCNLTDKTLE-----LISGLTGLVSLNVSN--SRITSAGLRHL 465
               K+L    L+ L +   +TD  L+     L+ G   L           +T  GL ++
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 466 -KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            +   N+R + L     +   +    SR  PNL  
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQK 492

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  107 bits (269), Expect = 5e-25
 Identities = 65/378 (17%), Positives = 130/378 (34%), Gaps = 53/378 (14%)

Query: 152 KGLMKLESLNIKW---CNCITDSDMKPLSGLTNLKSLQIS--------------CSKVTD 194
           +   K++S   +      C T +  +      NL+SL++                     
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT 101

Query: 195 SGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALG--SLFYLNLNRC-QLSDDGCEKFSK 250
             +  +   L++L  ++     V+   LD L+      L  L L++C   + DG      
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 251 I-GSLKVLNLGFNEITDECLVHL----KGLTNLESLNLDSCG---IGDEGLVNLTGLC-N 301
               +K L +  +  +++    L    +  T+LE LN        I  + L  +   C +
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 302 LKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
           L  +++ D ++       +  + L      +L+           L     L  L L    
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL--SY 279

Query: 360 ITDTGLAALTSL-TGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI- 416
           +    +  L      +  LDL  A   T+     ++   NL  LE     + D G++ + 
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA 338

Query: 417 KDLSSLTLLNLSQNCN----------LTDKTLELIS-GLTGLVSLNVSNSRITSAGLRHL 465
           +    L  L + +  +          ++ + L  ++ G   L  + V  S IT+  L  +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 466 ----KPLKNLRSLTLESC 479
               K L + R + L+  
Sbjct: 399 GTYLKNLCDFRLVLLDRE 416

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)

Query: 24  SLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSG--SDVTDSGLIHL-KDC 80
           +L  FR   L D          D  +  +      L           +TD GL ++ +  
Sbjct: 404 NLCDFRLVLL-DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 81  SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDL 138
            N++ +   +    SD GL    RG  NL  L  R     + + + A    L +L  L +
Sbjct: 463 PNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520

Query: 139 ERCTRIHGG---LVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
           +       G   +   +    +E +  +    +         
Sbjct: 521 QGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREM 562

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  189 bits (482), Expect = 1e-53
 Identities = 108/526 (20%), Positives = 191/526 (36%), Gaps = 84/526 (15%)

Query: 10  IFNELVYSRC--LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGS 67
           +    V  R   +  V L+     A  +L    + G    W++ ++S  + L  + L   
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115

Query: 68  DVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 126
            VTD  L  + K   N + L  + C   S  GL  +                        
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI------------------------ 151

Query: 127 FAGLINLVKLDLERCTRIHGGLVNL----KGLMKLESLNIKWCNC-ITDSDMKPL-SGLT 180
            A   NL +LDL            L         L SLNI      ++ S ++ L +   
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           NLKSL+++ +   +     L+   +L  L   G        +    + S   + L+ C+ 
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY-----TAEVRPDVYSGLSVALSGCK- 265

Query: 241 SDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLTGL 299
                        L+ L+ GF +     L  +    + L +LNL    +    LV L   
Sbjct: 266 ------------ELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 300 C-NLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---------FTGISDGSLRKLA-GL 347
           C  L+ L + D  +  +GL  L S   +L  + +             +++  L  ++ G 
Sbjct: 313 CPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 348 SSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG----------ARITDSGAAYL-RNF 395
             L+S+    RQ+T+  L  +  +   +T   L                D G   +  + 
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 396 KNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVS 453
           K+LR L +  G LTD   ++I      + +L+++     +D  +  ++SG   L  L + 
Sbjct: 432 KDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVA-FAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 454 NSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
           +       L  +   L+ +RSL + SC V+    K L  + +P L 
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK-MPKLN 534

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  127 bits (321), Expect = 9e-32
 Identities = 74/450 (16%), Positives = 139/450 (30%), Gaps = 59/450 (13%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI---------------HGGLV 149
           +           N               +  ++L+                         
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA 99

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLS-GLTNLKSLQIS-CSKVTDSGIAYL-KGLQKL 206
                  LE + +K    +TD  ++ ++    N K L +S C   +  G+A +    + L
Sbjct: 100 MSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 207 TLLNLEGCPVTAACLDSLSALG----SLFYLNLNRC--QLSDDGCEKFSK-IGSLKVLNL 259
             L+L    V       LS       SL  LN++    ++S    E+      +LK L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD----TQVGS 314
                 ++    L+    LE L            + +   +    C EL           
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 315 SGLRHL-SGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTS-L 371
           + L  + S  + L ++NLS+  +    L KL      L+ L +    I D GL  L S  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAGLEVLASTC 337

Query: 372 TGLTHLDLFG---------ARITDSG-AAYLRNFKNLRSLEICGGGLTDAGVKHI-KDLS 420
             L  L +F            +T+ G  +       L S+      +T+A +  I ++  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 421 SLTLLNLS---------QNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLK 469
           ++T   L                D     ++     L  L++S   +T     ++    K
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAK 456

Query: 470 NLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            +  L++     +   +  +      +L  
Sbjct: 457 KMEMLSVAFAGDSDLGMHHV-LSGCDSLRK 485

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 34/241 (14%), Positives = 78/241 (32%), Gaps = 28/241 (11%)

Query: 13  ELVYSRCLTEVSLEAFRDC--ALQDLCLGQY--------PGVNDKWMDVIASQGSSLLSV 62
            L     + +  LE        L++L +             + ++ +  ++     L SV
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 63  DLSGSDVTDSGLIHL-KDCSNLQSLD---------FNFCIQISDGGLEHL-RGLSNLTSL 111
                 +T++ LI + ++  N+                 ++  D G   +     +L  L
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

Query: 112 SFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVNL-KGLMKLESLNIKWCNCIT 169
           S      +T +  +        +  L +        G+ ++  G   L  L I+ C    
Sbjct: 438 SLS--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK---GLQKLTLLNLEGCPVTAACLDSLSA 226
            + +   S L  ++SL +S   V+      L        + +++  G P +      +  
Sbjct: 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVER 555

Query: 227 L 227
           +
Sbjct: 556 V 556

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (429), Expect = 5e-47
 Identities = 109/426 (25%), Positives = 188/426 (44%), Gaps = 37/426 (8%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +            ++D        L  +T+L   R   I    +     L NL
Sbjct: 17  IFTDTALAEKMKTVLGKT-NVTD--TVSQTDLDQVTTLQADRLG-IK--SIDGVEYLNNL 70

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +++     ++   +  LK L KL  + +   N I   D+ PL+ LTNL  L +  +++T
Sbjct: 71  TQINF-SNNQLT-DITPLKNLTKLVDILMNN-NQIA--DITPLANLTNLTGLTLFNNQIT 125

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D  I  LK L  L  L L    ++   + +LS L SL  L+              + + +
Sbjct: 126 D--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTT 178

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L+ L++  N+++D  +  L  LTNLESL   +  I    +  L  L NL  L L+  Q+ 
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQL- 233

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L A QI++  ++ L  LT 
Sbjct: 234 -KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTA 288

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           LT+L+L   ++ D   + + N KNL  L +    ++D  +  +  L+ L  L    N  +
Sbjct: 289 LTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNN-KV 343

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 493
           +D  +  ++ LT +  L+  +++I+   L  L  L  +  L L     T   +    +  
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 494 LPNLVS 499
           +PN V 
Sbjct: 400 IPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 7e-42
 Identities = 109/403 (27%), Positives = 185/403 (45%), Gaps = 35/403 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++L  ++ S + +TD  +  LK+ + L  +  N   QI+D  +  L  L+NLT L+   N
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD--ITPLANLTNLTGLTLFNN 122

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT   +     L NL +L+L     I   +  L GL  L+ L+    N +TD   KPL
Sbjct: 123 Q-IT--DIDPLKNLTNLNRLELSSN-TISD-ISALSGLTSLQQLSFG--NQVTDL--KPL 173

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           + LT L+ L IS +KV+D  I+ L  L  L  L      ++   +  L  L +L  L+LN
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             QL D      + + +L  L+L  N+I++  L  L GLT L  L L +  I    +  L
Sbjct: 230 GNQLKDI--GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI--SNISPL 283

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
            GL  L  LEL++ Q+    +  +S L NL  + L F  ISD  +  ++ L+ L+ L   
Sbjct: 284 AGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             +++D  +++L +LT +  L     +I+D     L N   +  L +     T+     +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN---APV 392

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              +++++ N  +N          IS        +++ +  + 
Sbjct: 393 NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (383), Expect = 1e-41
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 30/372 (8%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             ++    + +    +    D +            ++D  +     L ++T L       
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKA-SVTD--VVTQEELESITKLVVAGEK- 55

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
           +    ++    L NL  L+L    +I   +  L  L+KL +L I   N ITD  +  L  
Sbjct: 56  VA--SIQGIEYLTNLEYLNLNGN-QITD-ISPLSNLVKLTNLYIGT-NKITD--ISALQN 108

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LTNL+ L ++   ++D  I+ L  L K+  LNL      +  L  LS +  L YL +   
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           ++ D      + +  L  L+L +N+I D  +  L  LT+L         I    +  +  
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
           +  L  L++ + ++  + L  L+ L+ L  + +    ISD  +  +  L+ LK LN+ + 
Sbjct: 220 MTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           QI+D  ++ L +L+ L  L L   ++ +     +    NL +L +    +TD  ++ +  
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLAS 331

Query: 419 LSSLTLLNLSQN 430
           LS +   + +  
Sbjct: 332 LSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (381), Expect = 2e-41
 Identities = 97/376 (25%), Positives = 171/376 (45%), Gaps = 31/376 (8%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT 142
             +L       I+   +     L+       ++ + +T   +     L ++ KL +    
Sbjct: 2   AATLATLPA-PINQ--IFPDADLAEGIRAVLQKAS-VT--DVVTQEELESITKLVV-AGE 54

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG 202
           ++   +  ++ L  LE LN+   N ITD  + PLS L  L +L I  +K+TD  I+ L+ 
Sbjct: 55  KVAS-IQGIEYLTNLEYLNLNG-NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQN 108

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L  L  L L    ++   +  L+ L  ++ LNL       D     S +  L  L +  +
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES 165

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
           ++ D  +  +  LT+L SL+L+   I  E +  L  L +L        Q+  + +  ++ 
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQI--TDITPVAN 219

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 382
           +T L S+ +    I+D  L  LA LS L  L +   QI+D  + A+  LT L  L++   
Sbjct: 220 MTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN 275

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           +I+D     L N   L SL +    L +  ++ I  L++LT L LSQN ++TD  +  ++
Sbjct: 276 QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITD--IRPLA 330

Query: 443 GLTGLVSLNVSNSRIT 458
            L+ + S + +N  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (377), Expect = 1e-40
 Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)

Query: 148 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT 207
           +     L +     ++  +    +D+     L ++  L ++  KV    I  ++ L  L 
Sbjct: 15  IFPDADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 208 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
            LNL G  +T   +  LS L  L  L +   +++D        + +L+ L L  + I+D 
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD- 124

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
            +  L  LT + SLNL +       L  L+ +  L  L +++++V    +  ++ LT+L 
Sbjct: 125 -ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLY 180

Query: 328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 387
           S++L++  I D  +  LA L+SL        QITD  +  + ++T L  L +   +ITD 
Sbjct: 181 SLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL 236

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
               L N   L  LEI    ++D  +  +KDL+ L +LN+  N  ++D  + +++ L+ L
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSN-QISD--ISVLNNLSQL 289

Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
            SL ++N+++ +  +  +  L NL +L L    +T
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 5e-38
 Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 26/329 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            S+  + ++G  V    +  ++  +NL+ L+ N   QI+D  +  L  L  LT+L     
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTNLYIG-T 97

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N IT   + A   L NL +L L     I   +  L  L K+ SLN+   + +  SD+ PL
Sbjct: 98  NKIT--DISALQNLTNLRELYLNED-NISD-ISPLANLTKMYSLNLGANHNL--SDLSPL 151

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           S +T L  L ++ SKV D  +  +  L  L  L+L    +    +  L++L SL Y    
Sbjct: 152 SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q++D      + +  L  L +G N+ITD  L  L  L+ L  L + +  I    +  +
Sbjct: 208 VNQITDI--TPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--SDINAV 261

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L  LK L +   Q+  S +  L+ L+ L S+ L+   + +  +  + GL++L +L L 
Sbjct: 262 KDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT 385
              ITD  +  L SL+ +   D     I 
Sbjct: 320 QNHITD--IRPLASLSKMDSADFANQVIK 346

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  145 bits (369), Expect = 1e-38
 Identities = 87/463 (18%), Positives = 167/463 (36%), Gaps = 72/463 (15%)

Query: 57  SSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLTSL 111
             + S+D+   +++D+    L       Q +  + C  +++   +     LR    L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 61

Query: 112 SFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----LESLNI 162
           +  R+N +   G+      +      + KL L+ C     G   L   ++    L+ L++
Sbjct: 62  NL-RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 163 KWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNLEG 213
              N + D+ ++ L          L+ LQ+    ++ +        L+       L +  
Sbjct: 121 SD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 214 CPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEI 264
             +  A +  L          L  L L  C ++ D C     I     SL+ L LG N++
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 265 TDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLELSDTQVGSS 315
            D  +  L        + L +L +  CGI  +G  +L        +LK L L+  ++G  
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 316 GLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA 366
           G R L          LES+ +     +       + +      L  L +   ++ D G+ 
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 367 AL-----TSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKHIK 417
            L        + L  L L    ++DS  +     L    +LR L++    L DAG+  + 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 418 DL-----SSLTLLNLSQNCNLTDKTLELISGL----TGLVSLN 451
           +        L  L L  +   +++  + +  L      L  ++
Sbjct: 420 ESVRQPGCLLEQLVLY-DIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  138 bits (350), Expect = 4e-36
 Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 51/360 (14%)

Query: 180 TNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSAL----GSLFYLN 234
            +++SL I C +++D+  A L   LQ+  ++ L+ C +T A    +S+      +L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 235 LNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDS 285
           L   +L D G     +        ++ L+L    +T          L+ L  L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 286 CGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRH----LSGLTNLESINLSFTGI 336
             +GD GL  L        C L+ L+L    + ++        L    + + + +S   I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 337 SDGSLRKLAGL-----SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDS 387
           ++  +R L          L++L L++  +T          + S   L  L L   ++ D 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 388 GA-----AYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 438
           G        L     LR+L I   G+T  G   +    +   SL  L+L+ N  L D+  
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301

Query: 439 ELISGL-----TGLVSLNVSNSRITSAGLRH----LKPLKNLRSLTLESCKVTANDIKRL 489
            L+          L SL V +   T+A   H    L   + L  L + + ++    ++ L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  135 bits (343), Expect = 3e-35
 Identities = 94/450 (20%), Positives = 168/450 (37%), Gaps = 67/450 (14%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGLVN----LKGLMKLESL 160
            ++ SL  +    ++          L     + L+ C        +    L+    L  L
Sbjct: 3   LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 161 NIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 211
           N++  N + D  +  +          ++ L +    +T +G       L+ L  L  L+L
Sbjct: 62  NLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 212 EGCPVTAACLDSLSALG-----SLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFN 262
               +  A L  L          L  L L  C LS   CE  + +       K L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 263 EITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVG 313
           +I +  +  L +GL      LE+L L+SCG+  +   +    +    +L+ L L   ++G
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 314 SSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTG 364
             G+  L        + L ++ +   GI+      L        SLK L+L   ++ D G
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 365 LAALTSL-----TGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVKH 415
              L          L  L +     T +  ++    L   + L  L+I    L DAGV+ 
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 416 I-----KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSRITSAGLRHL- 465
           +     +  S L +L L+ +C+++D +   ++        L  L++SN+ +  AG+  L 
Sbjct: 361 LCQGLGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 466 ----KPLKNLRSLTLESCKVTANDIKRLQS 491
               +P   L  L L     +     RLQ+
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 6e-36
 Identities = 95/463 (20%), Positives = 164/463 (35%), Gaps = 27/463 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +++  ++L+ + +      +    S L SLD  F   IS    E  + L  L  L+ + N
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             ++    K FA   NL +L L      +I            L +L++   N ++ + + 
Sbjct: 84  E-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKNLITLDLSH-NGLSSTKLG 139

Query: 175 PLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
               L NL+ L +S +K+    S    +     L  L L    +         A+G LF 
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 233 LNLNRCQLSDDGCEKFSKIG---SLKVLNLGFNEITDECLVHLKGL--TNLESLNLDSCG 287
           L LN  QL     EK        S++ L+L  ++++        GL  TNL  L+L    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL---------SFTGISD 338
           +   G  +   L  L+   L    +       L GL N+  +NL         S   +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT----DSGAAYLRN 394
                   L  L+ LN++   I        T L  L +L L  +  +     +       
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
              L  L +    ++         L  L +L+L  N    + T +   GL  +  + +S 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
           ++           + +L+ L L    +   D      + L NL
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 4e-32
 Identities = 84/414 (20%), Positives = 159/414 (38%), Gaps = 26/414 (6%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
            +N+T L+   N  +       F     L  LD+     +++   L   + L  L+ LN+
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNL 80

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
           +    ++    K  +  TNL  L +  + +           + L  L+L    +++  L 
Sbjct: 81  QHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIG--SLKVLNLGFNEITDECLVHLKGLTNLES 280
           +   L +L  L L+  ++     E+       SLK L L  N+I +        +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 281 LNLDSCGIGD---EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTG 335
           L L++  +G    E L       +++ L LS++Q+ ++      GL  TNL  ++LS+  
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL---------FGARITD 386
           ++       A L  L+   L+   I      +L  L  + +L+L           A +  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGL- 444
                 +  K L  L +    +          L +L  L+LS +  +L   T E    L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 445 -TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
            + L  LN++ ++I+         L +L  L L   ++   ++   + R L N+
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 69/361 (19%), Positives = 121/361 (33%), Gaps = 39/361 (10%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P    TN+  L ++ +++     A      +LT L++    ++    +    L  L  LN
Sbjct: 20  PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   +LS    + F+   +L  L+L  N I            NL +L+L   G+    L 
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 295 NLTGLCNLKCLELSD-----------TQVGSSGLRHL---------------SGLTNLES 328
               L NL+ L LS+               +S L+ L                 +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 329 INLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL--TGLTHLDLFGAR 383
           + L+           L      +S+++L+L   Q++ T       L  T LT LDL    
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN--------CNLTD 435
           +   G         L    +    +       +  L ++  LNL ++         +L  
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
                   L  L  LN+ ++ I          L NL+ L+L +   +   +       L 
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 496 N 496
           +
Sbjct: 380 H 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 1e-24
 Identities = 71/375 (18%), Positives = 138/375 (36%), Gaps = 30/375 (8%)

Query: 55  QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           + ++L  +DLS +++   G         L+     +   I       L GL N+  L+ +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLK 304

Query: 115 RN--------NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW 164
           R+         ++      +F  L  L  L++E      I   +    GL+ L+ L++  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSN 362

Query: 165 CNCITDSDMKPLS----GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA- 219
            +  +   +   +      + L  L ++ +K++         L  L +L+L    +    
Sbjct: 363 -SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTN 277
                  L ++F + L+  +        F+ + SL+ L L    +   D      + L N
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 278 LESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ--------VGSSGLRHLSGLTNLESI 329
           L  L+L +  I +     L GL  L+ L+L                 +  L GL++L  +
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SG 388
           NL   G  +  +     L  LK ++L    +     +   +   L  L+L    IT    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 389 AAYLRNFKNLRSLEI 403
             +   F+NL  L++
Sbjct: 602 KVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 6e-17
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 9/254 (3%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S +V +    ++T    V     TN+  LNL    +      N T    L  L++    +
Sbjct: 5   SHEVADCSHLKLTQ---VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                     L  L+ +NL    +S  S +  A  ++L  L+L +  I            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 430
            L  LDL    ++ +        +NL+ L +    +    +    I   SSL  L LS N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 431 CNLTDKTLELISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSLTLESCKVTANDIK 487
             + + +      +  L  L ++N ++       L       ++R+L+L + +++     
Sbjct: 182 -QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 488 RLQSRDLPNLVSFR 501
                   NL    
Sbjct: 241 TFLGLKWTNLTMLD 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  132 bits (333), Expect = 3e-33
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 18/260 (6%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             + P           +    VTD        L  +  +      + +  +  +  L ++
Sbjct: 12  KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNV 67

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L LN  +L+D   +  + + +L  L L  N+I D  L  LK L  L+SL+L+  GI D
Sbjct: 68  TKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD 123

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L  L  L+ L L + ++  + +  LS LT L++++L    ISD  +  LAGL+ L
Sbjct: 124 --INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKL 177

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
           ++L L    I+D  L AL  L  L  L+LF     +    +  N     +++   G  + 
Sbjct: 178 QNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SL 233

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
              + I D       N+  +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (284), Expect = 6e-27
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 45/277 (16%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +  +L    VTD   +   + +++  +  N    I    ++ ++ L N+T L    N
Sbjct: 21  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS-DIKS--VQGIQYLPNVTKLFLNGN 75

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +T   +K    L NL  L L+                          N I D  +  L
Sbjct: 76  K-LT--DIKPLTNLKNLGWLFLDE-------------------------NKIKD--LSSL 105

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L  LKSL +  + ++D  I  L  L +L  L L    +T   +  LS L  L  L+L 
Sbjct: 106 KDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             Q+SD      + +  L+ L L  N I+D  L  L GL NL+ L L S    ++ + + 
Sbjct: 162 DNQISD--IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           + L     ++ +D  + +     +S   + E  N+ +
Sbjct: 218 SNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  108 bits (270), Expect = 3e-25
 Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 45/244 (18%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           +         I    +            NL    + D   V    L ++  +  +++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
           S  ++ +  L N+  + L+   ++D  ++ L  L +L  L LD  +I D  L++L  L  
Sbjct: 57  S--VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD--LSSLKDLKK 110

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L  L L    I+D                          +  +  L  L  L L  N  +
Sbjct: 111 LKSLSLEHNGISD--------------------------INGLVHLPQLESLYLGNN-KI 143

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRD 493
           TD  + ++S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    
Sbjct: 144 TD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAG-- 195

Query: 494 LPNL 497
           L NL
Sbjct: 196 LKNL 199

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 2e-32
 Identities = 92/434 (21%), Positives = 152/434 (35%), Gaps = 18/434 (4%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR-R 115
            +L S+ L  + ++   L        L+ LDF     I     E +  L   T+LS    
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKG--LMKLESLNIKWCNCITDSDM 173
            N I      AF        L+      +      LK   +  L     +  +   D   
Sbjct: 188 GNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISP 245

Query: 174 KPLSGL--TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
               GL   +++S+ +      +           L  L+L    ++      L  L +L 
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLK 304

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI-TDECLVHLKGLTNLESLNLDSCGIGD 290
            L L+  +  +      S   SL  L++  N    +     L+ L NL  L+L    I  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 291 EGLVN--LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGL 347
               N  L  L +L+ L LS  +  S           LE ++L+FT +    +      L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE---IC 404
             LK LNL    +  +       L  L HL+L G            + + L  LE   + 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH 464
              L+         L  +  ++LS N  LT  ++E +S L G+  LN++++ I+      
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 465 LKPLKNLRSLTLES 478
           L  L   R++ L  
Sbjct: 543 LPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  126 bits (318), Expect = 3e-31
 Identities = 89/456 (19%), Positives = 153/456 (33%), Gaps = 48/456 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L ++ L+ + +       L     L+ L F     IS      L     L SL    N
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGLMKLESLNIKWCNCITDSDM 173
           + I++  +        L  LD +      +    + +L+      SLN+   N I   + 
Sbjct: 140 H-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNG-NDIAGIEP 196

Query: 174 KPLSGLT----NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS 229
                      N    Q           + ++ L   T  +++   ++ A  + L  + S
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG 289
           +  +NL +    +     F     L+ L+L    ++ E    L GL+ L+ L L +    
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 290 DEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAG 346
           +   ++ +   +L  L +   T+    G   L  L NL  ++LS   I         L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           LS L+SLNL   +       A      L  LDL   R+    A                 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-------------- 420

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-- 464
                     ++L  L +LNLS +  L   + +L  GL  L  LN+  +      ++   
Sbjct: 421 ---------FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 465 -LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            L+ L  L  L L        D+  +      +L  
Sbjct: 471 SLQTLGRLEILVLSF-----CDLSSIDQHAFTSLKM 501

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (317), Expect = 5e-31
 Identities = 90/429 (20%), Positives = 161/429 (37%), Gaps = 22/429 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           ++ + L+F+F   +          L NLT L   R   I       F     L  L L  
Sbjct: 33  NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA 90

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                +      L G   L+ L       I+  D  PL     L+SL +  + ++   + 
Sbjct: 91  NPLIFMAETA--LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSL--FYLNLNRCQLSDDGCEKFSKIGSLKV 256
                +KL +L+ +   +     + +S+L       LNLN   ++      F      + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQS 206

Query: 257 LNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGDEGLVNLTGLC--NLKCLELSDTQV 312
           LN G  +        LK   + +L     +     D       GLC  +++ + L     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
            +         + L+ ++L+ T +S+     L GLS+LK L L A +  +    + ++  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 373 GLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQ 429
            LTHL + G  +  + G   L N +NLR L++    +  +   +  +++LS L  LNLS 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKR 488
           N        E       L  L+++ +R+     +   + L  L+ L L    +  +  + 
Sbjct: 386 N-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 489 LQSRDLPNL 497
                LP L
Sbjct: 445 FDG--LPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 4e-29
 Identities = 89/403 (22%), Positives = 142/403 (35%), Gaps = 17/403 (4%)

Query: 105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNI 162
            ++   L F  N  +       F+ LINL  LDL RC    IH      +   +L++L +
Sbjct: 32  PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--FQSQHRLDTLVL 88

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
              N +       LSG   LK L    + ++      L   + L  L L    +++  L 
Sbjct: 89  TA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV--LNLGFNEITDECLVHLKGLTNLES 280
                  L  L+     +     E  S +       LNL  N+I              +S
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQS 206

Query: 281 LNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLSFTGI 336
           LN             L    + +L      D            GL   ++ESINL     
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
            + S       S L+ L+L A  +++   + L  L+ L  L L   +  +       NF 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 397 NLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNC-NLTDKTLELISGLTGLVSLNVSN 454
           +L  L I G     + G   +++L +L  L+LS +    +D     +  L+ L SLN+S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
           +   S      K    L  L L   ++   D +     +L  L
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (271), Expect = 3e-25
 Identities = 80/424 (18%), Positives = 144/424 (33%), Gaps = 19/424 (4%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           +  +   AF     Q L  G    +   +  +  S   SL        D  D      + 
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 80  CS--NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 137
               +++S++        +         S L  L     + ++ +      GL  L KL 
Sbjct: 251 LCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATH-LS-ELPSGLVGLSTLKKLV 307

Query: 138 LERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS 195
           L       +     +      L  L+IK      +     L  L NL+ L +S   +  S
Sbjct: 308 LSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 196 GIAY--LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIG 252
                 L+ L  L  LNL      +   ++      L  L+L   +L   D    F  + 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV---NLTGLCNLKCLELSD 309
            LKVLNL  + +         GL  L+ LNL         +    +L  L  L+ L LS 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 310 TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 369
             + S      + L  +  ++LS   ++  S+  L+ L  +  LNL +  I+    + L 
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP 544

Query: 370 SLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
            L+    ++L    +       Y   +      ++      D   ++   L  + L +++
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL--EDTEDTLCENPPLLRGVRLSDVT 602

Query: 429 QNCN 432
            +C+
Sbjct: 603 LSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 49/249 (19%), Positives = 76/249 (30%), Gaps = 5/249 (2%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S + L   FN +          L NL  L+L  C I             L  L L+   +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                  LSG   L+ +    TGIS      L    +L+SL L +  I+   L       
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNC 431
            L  LD     I       + + +   +L +   G   AG+     D +    LN     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 432 NLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 490
           NL      L  S +  L      +           + L     +++ES  +  +    + 
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE---MSVESINLQKHYFFNIS 270

Query: 491 SRDLPNLVS 499
           S        
Sbjct: 271 SNTFHCFSG 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  124 bits (313), Expect = 3e-32
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + + P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNL 65

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L L   Q++D        +  +  L L  N + +  +  + GL ++++L+L S  I D
Sbjct: 66  IGLELKDNQITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +  L GL NL+ L L   Q+  + +  L+GLTNL+ +++    +SD  L  LA LS L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
            +L  D  +I+D  ++ L SL  L  + L   +I+D     L N  NL  + +    +T+
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

Query: 411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 461
              + +   ++L + N+ +  +        IS      S N++ +  +   
Sbjct: 232 ---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  117 bits (296), Expect = 8e-30
 Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           +   +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
             + L  L  LT +  + LS   + +  +  +AGL S+K+L+L + QITD  +  L  L+
Sbjct: 76  --TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGLS 129

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  L L   +IT+     L    NL+ L I    ++D  +  + +LS LT L    N  
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDN-K 184

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
           ++D  +  ++ L  L+ +++ N++I+   +  L    NL  +TL +  +T   +    + 
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 493 DLPNLVS 499
            +PN+V 
Sbjct: 241 VVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 1e-23
 Identities = 57/259 (22%), Positives = 115/259 (44%), Gaps = 25/259 (9%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +N   +       ++D        L  +T+LS      +T   ++    L NL
Sbjct: 12  IFPDPALANAIKIAAGKS-NVTD--TVTQADLDGITTLSAFGTG-VTT--IEGVQYLNNL 65

Query: 134 VKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           + L+L+  + T +      LK L K+  L +   N + +  +  ++GL ++K+L ++ ++
Sbjct: 66  IGLELKDNQITDL----APLKNLTKITELEL-SGNPLKN--VSAIAGLQSIKTLDLTSTQ 118

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +TD  +  L GL  L +L L+   +T   +  L+ L +L YL++   Q+SD      + +
Sbjct: 119 ITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             L  L    N+I+D  +  L  L NL  ++L +  I D  +  L    NL  + L++  
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQT 228

Query: 312 VGSSGLRHLSGLTNLESIN 330
           + +  + + + L     + 
Sbjct: 229 ITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           S+ ++DL+ + +TD  +  L   SNLQ L  +   QI++  +  L GL+NL  LS   N 
Sbjct: 108 SIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLN-QITN--ISPLAGLTNLQYLSIG-NA 161

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++   +   A L  L  L  +        + ++  L  L +L          SD+ PL+
Sbjct: 162 QVS--DLTPLANLSKLTTLKAD-----DNKISDISPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             +NL  + ++   +T+  + Y   L     +    G P+      ++S  G+    NL 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLT 271

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  126 bits (319), Expect = 4e-31
 Identities = 84/466 (18%), Positives = 169/466 (36%), Gaps = 41/466 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEH--LRGLSNLTSLSFR 114
            +L  +DL  S +        +   +L  L   FC  +SD  L+    R L  LT L   
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLS 131

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGLMKLESLNIKWCNCITDS 171
           +N   +     +F  L +L  +D        +    L  L+G   L   ++   +  +  
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRV 190

Query: 172 DMKPLSGLTNLKSLQIS-----------------CSKVTDSGIAYLKGLQKLTLLNLEGC 214
            +     +   +++ +                   + ++ S    L     +        
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 215 PVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL 272
            +     ++ + L   S+ +L+L+   +       F  +  LKVLNL +N+I        
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
            GL NL+ LNL    +G+    N  GL  +  ++L    +     +    L  L++++L 
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAY 391
              ++      +  + S+  + L   ++       LT       + L   R+ +     +
Sbjct: 371 DNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYF 421

Query: 392 LRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQN----CNLTDKTLELISGLTG 446
           L    +L+ L +     +  +G +   +  SL  L L +N       T+   ++  GL+ 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 447 LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
           L  L ++++ + S        L  LR L+L S ++T      L + 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 1e-29
 Identities = 86/470 (18%), Positives = 156/470 (33%), Gaps = 39/470 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++   + LS + +             LQ L+            E  R L NL  L    +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN---LKGLMKLESLNIKWCNCITDSDM 173
             I      AF GL +L +L L  C  +   ++     + L  L  L++      +    
Sbjct: 84  K-IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLF 231
                L +LKS+  S +++       L+ LQ  TL   +L    + +          + F
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 232 ------YLNLNRCQLSDDGCEKFSKIGS------------LKVLNLGFNEITDECLVHLK 273
                  L+++    + D    FS   S            +     GF+ I D       
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 274 GL--TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           GL  +++  L+L    +          L +LK L L+  ++         GL NL+ +NL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
           S+  + +       GL  +  ++L    I          L  L  LDL    +T      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
           +    ++  + + G  L       +  ++ +  L++LS+N       L  +  +  L  L
Sbjct: 377 IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 451 NVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            ++ +R +S           +L  L L    +       L       L  
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (289), Expect = 3e-27
 Identities = 80/426 (18%), Positives = 139/426 (32%), Gaps = 50/426 (11%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           CS    + F          L  + + L+    L    N  I      +F  L  L  L+L
Sbjct: 2   CSFDGRIAFY-----RFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLEL 55

Query: 139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS-DMKPLSGLTNLKSLQISCSKVTDSGI 197
                                           + D +    L NL+ L +  SK+     
Sbjct: 56  GS-------------------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 198 AYLKGLQKLTLLNLEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSL 254
              +GL  L  L L  C ++ A L       L +L  L+L++ Q+        F K+ SL
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 255 KVLNLGFNEITDECLVHLKGLT--NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQ 311
           K ++   N+I   C   L+ L    L   +L +  +     +     +   + + L    
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           V  +G         ++        IS      L     +         I D        L
Sbjct: 211 VSGNGW-------TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 372 --TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
             + + HLDL    +    +      K+L+ L +    +     +    L +L +LNLS 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKR 488
           N  L +       GL  +  +++  + I     +  K L+ L++L L    +T  + I  
Sbjct: 324 N-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 489 LQSRDL 494
           +    L
Sbjct: 383 IPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (270), Expect = 5e-25
 Identities = 80/420 (19%), Positives = 146/420 (34%), Gaps = 29/420 (6%)

Query: 75  IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL--IN 132
           + +        +  NF   IS      L    ++    F  +N I       FAGL   +
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN-IKDPDQNTFAGLARSS 267

Query: 133 LVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
           +  LDL       ++  +   + L  L+ LN+ + N I     +   GL NL+ L +S +
Sbjct: 268 VRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYN 324

Query: 191 KVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK 250
            + +   +   GL K+  ++L+   +      +   L  L  L+L    L+         
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHF 379

Query: 251 IGSLKVLNLGFNEITDECLVHLKGLT-NLESLNLDSCGI-GDEGLVNLTGLCNLKCLELS 308
           I S+  + L  N++       L  +      ++L    +   + L  L  + +L+ L L+
Sbjct: 380 IPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 309 DTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKL-----AGLSSLKSLNLDARQITD 362
             +  S       S   +LE + L    +      +L      GLS L+ L L+   +  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
                 + LT L  L L   R+T      L    NL  L+I    L          LS L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552

Query: 423 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
            + +    C     T    ++     ++   ++             L +L +   +  +V
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 56/301 (18%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLNL 283
             L +   L L+   +       F  +  L++L LG             + L NL  L+L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINLSFTGISDGSL 341
            S  I         GL +L  L L    +  + L+      L  L  ++LS   I    L
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 342 RK-LAGLSSLKSLNLDARQITDTGLAALTSLTG--LTHLDLFGARITDSGAAYL------ 392
                 L+SLKS++  + QI       L  L G  L+   L    +    +         
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 393 ------------RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
                        N   +         ++ +    +     +       + N+ D     
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH-NIKDPDQNT 259

Query: 441 ISGL--TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
            +GL  + +  L++S+  + S   R  + LK+L+ L L       N I ++       L 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-----NKINKIADEAFYGLD 314

Query: 499 S 499
           +
Sbjct: 315 N 315

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 51/273 (18%), Positives = 84/273 (30%), Gaps = 26/273 (9%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLE 306
              + + + L L FN I          L  L+ L L S              L NL+ L+
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK--LAGLSSLKSLNLDARQITDTG 364
           L  +++         GL +L  + L F G+SD  L+      L +L  L+L   QI    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 365 L-AALTSLTGLTHLDLFGARITDSGAAYLRNF--KNLRSLEICGGGLTD------AGVKH 415
           L  +   L  L  +D    +I       L     K L    +    L            +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTG-----------LVSLNVSNSRITSAGLRH 464
                 L +L++S N    D T    + ++            ++        I       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP---D 256

Query: 465 LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
                 L   ++    ++   +  L SR    L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 27/251 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L  ++L+ + +            NLQ L+ ++   + +    +  GL  +  +  ++N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGL--------------MKLESL 160
           + I     + F  L  L  LDL     T IH  + ++  +              +    +
Sbjct: 349 H-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGC----- 214
           ++          +  L  + +L+ L ++ ++ +  SG         L  L L        
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
             T  C D    L  L  L LN   L+      FS + +L+ L+L  N +T   L H   
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDL 524

Query: 275 LTNLESLNLDS 285
             NLE L++  
Sbjct: 525 PANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 14/170 (8%)

Query: 336 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAA 390
           I+      L      L++ + L L    I     ++   L  L  L+L       +    
Sbjct: 8   IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLV 448
             RN  NLR L++    +        + L  L  L L     L+D  L+      L  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALT 126

Query: 449 SLNVSNSRITSAGLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
            L++S ++I S  L      L +L+S+   S     N I  +   +L  L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-----NQIFLVCEHELEPL 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (310), Expect = 3e-30
 Identities = 81/439 (18%), Positives = 150/439 (34%), Gaps = 29/439 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR- 114
            +L  ++++ + +    L  +  + +NL  +D ++   I    +  L+ L     ++   
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSL 186

Query: 115 --RNNAITAQGMKAFAGLINLVKLDLERCTRI-------HGGLVNLKGLMKLESLNIKWC 165
               N I     +AF G+  L +L L                L  L    +L     K  
Sbjct: 187 DMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH-RLILGEFKDE 244

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLDS 223
             +   +   + GL ++   +   +   D          L  ++ ++L G  +    L+ 
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LED 302

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           +        L++ RCQL          +  LK L L  N+ +         L +L  L+L
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDL 357

Query: 284 DSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GS 340
               +        +  G  +L+ L+LS          +  GL  L+ ++   + +     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTE 416

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLR 399
                 L  L  L++               LT L  L + G    D+  +    N  NL 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L++    L          L  L LLN+S N NL        + L  L +L+ S +RI +
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 460 AGLRHLKPLKNLRSLTLES 478
           +        K+L    L +
Sbjct: 536 SKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (308), Expect = 7e-30
 Identities = 86/460 (18%), Positives = 154/460 (33%), Gaps = 34/460 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             L ++ L+G+ +           ++L++L      +++      +  L  L  L+   N
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN 138

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGG-LVNLKGL-MKLESLNIKWCNCITDSD 172
              + +    F+ L NLV +DL       I    L  L+       SL++     I    
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQ 197

Query: 173 MKPLSGLTNLKSLQISC----SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
            +   G+  L  L +      S +  + +  L GL    L+  E        +   S + 
Sbjct: 198 DQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 229 SLF-----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
            L         L       D   KF  + ++  ++L    I    L  +      +SL++
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSI 314

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGS 340
             C +          L  LK L L+  +   S       L +L  ++LS    +     S
Sbjct: 315 IRCQLKQ---FPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKNLR 399
              L G +SL+ L+L          A    L  L HLD   + +          + + L 
Sbjct: 370 YSDL-GTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L+I               L+SL  L ++ N    +    + +  T L  L++S  ++  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
                   L  L+ L +       N++  L S     L S
Sbjct: 488 ISWGVFDTLHRLQLLNMSH-----NNLLFLDSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 8e-23
 Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 20/360 (5%)

Query: 82  NLQSLDFNFCIQISDGGLEHLRGLSNLTSLS-----FRRNNAITAQGMKAFAGLINLVK- 135
            L  L        S+     L+ L+ L         F+    +         GL ++   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 136 -LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
              L         +V    L  + ++++     I    ++ +      +SL I   ++  
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAG-VSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

Query: 195 SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG-- 252
                L  L+ LTL   +G     +      AL SL YL+L+R  LS  GC  +S +G  
Sbjct: 322 FPTLDLPFLKSLTLTMNKG-----SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQ 311
           SL+ L+L FN        +  GL  L+ L+     +           L  L  L++S T 
Sbjct: 377 SLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS 370
                     GLT+L ++ ++     D +L    A  ++L  L+L   Q+         +
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
           L  L  L++    +    +++     +L +L+     +  +         SL   NL+ N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 82/435 (18%), Positives = 141/435 (32%), Gaps = 58/435 (13%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIH----GGLVNLK------- 152
           S+  ++    N  +      +F+    L  LDL RC    I      GL +L        
Sbjct: 32  SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 153 -----------GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYL 200
                      GL  LE+L       +   +  P+  L  LK L ++ + +    + AY 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
             L  L  ++L    +    ++ L  L         L+++   +     + F  I  L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE 208

Query: 257 LNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLELSD 309
           L L  N  +   +   L+ L  L    L      DE  +       + GLC++   E   
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 310 T--QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 367
           T     S  +     L N+ +++L+   I    L  +      +SL++   Q+       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQF---P 323

Query: 368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSSLTLL 425
              L  L  L L   + + S         +L  L++    L+            +SL  L
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 426 NLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTAN 484
           +LS N      +     GL  L  L+  +S +           L+ L  L +        
Sbjct: 382 DLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY-----T 434

Query: 485 DIKRLQSRDLPNLVS 499
           + K         L S
Sbjct: 435 NTKIDFDGIFLGLTS 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 44/360 (12%)

Query: 55  QGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLD-----FNFCIQISDGGLEHLRGLSNL 108
           QG  L  + L G+  + + +   L++ + L         F     +       + GL ++
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 109 TSLSFRRN-NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           T   FR       +  +  F  L N+  + L     I   L ++    K +SL+I     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY-LEDVPKHFKWQSLSIIR-CQ 318

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           +      P   L  LKSL ++ +K + S       L  L+ L+L    ++ +   S S L
Sbjct: 319 LKQF---PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 228 G--SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLD 284
           G  SL +L+L+           F  +  L+ L+   + +           L  L  L++ 
Sbjct: 374 GTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 285 SCGIGD------EGLVNLT-------------------GLCNLKCLELSDTQVGSSGLRH 319
                        GL +L                       NL  L+LS  Q+       
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
              L  L+ +N+S   +          L SL +L+    +I  +          L   +L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (295), Expect = 1e-28
 Identities = 75/303 (24%), Positives = 115/303 (37%), Gaps = 7/303 (2%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  + LD     +I     +      +L  L    N  ++A    AF  L NL  L L  
Sbjct: 32  TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRS 89

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                I  G+    GL  L  L+I   N I          L NLKSL++  + +      
Sbjct: 90  NRLKLIPLGV--FTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 199 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 258
              GL  L  L LE C +T+   ++LS L  L  L L    ++      F ++  LKVL 
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
           +      D    +     NL SL++  C +     + +  L  L+ L LS   + +    
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
            L  L  L+ I L    ++        GL+ L+ LN+   Q+T    +   S+  L  L 
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 379 LFG 381
           L  
Sbjct: 327 LDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 3e-27
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 1/289 (0%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I   +    +   +L+ L+++ + V+         L  L  L L    +    L   +
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L +L  L+++  ++       F  + +LK L +G N++         GL +LE L L+ 
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA 345
           C +       L+ L  L  L L    + +        L  L+ + +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
              +L SL++    +T     A+  L  L  L+L    I+    + L     L+ +++ G
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
           G L        + L+ L +LN+S N  LT     +   +  L +L + +
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 3e-26
 Identities = 69/299 (23%), Positives = 109/299 (36%), Gaps = 9/299 (3%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             LL+L    +     D  ++   L  L LN   +S      F+ + +L+ L L  N + 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
              L    GL+NL  L++    I          L NLK LE+ D  +     R  SGL +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
           LE + L    ++      L+ L  L  L L    I      +   L  L  L++      
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
           D+         NL SL I    LT      ++ L  L  LNLS N  ++     ++  L 
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL 272

Query: 446 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR---DLPNLVSFR 501
            L  + +   ++        + L  LR L +       N +  L+      + NL +  
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-----NQLTTLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 1/182 (0%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
             + L+L   ++ +      +   +LE + L+   +S         L +L++L L + ++
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 420
               L   T L+ LT LD+   +I        ++  NL+SLE+    L     +    L+
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
           SL  L L +  NLT    E +S L GL+ L + +  I +      K L  L+ L +    
Sbjct: 153 SLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 481 VT 482
             
Sbjct: 212 YL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           T    ++L    I   +  + A    L+ L L+   ++     A  +L  L  L L   R
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +            NL  L+I    +        +DL +L  L +  N +L   +    SG
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG 150

Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS---RDLPNL 497
           L  L  L +    +TS     L  L  L  L L        +I  ++    + L  L
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-----LNINAIRDYSFKRLYRL 202

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 3/188 (1%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           ++L+ L    C  ++    E L  L  L  L  R  N I A    +F  L  L  L++  
Sbjct: 152 NSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISH 209

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              +     N    + L SL+I  CN +T      +  L  L+ L +S + ++    + L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
             L +L  + L G  +      +   L  L  LN++  QL+      F  +G+L+ L L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 261 FNEITDEC 268
            N +  +C
Sbjct: 329 SNPLACDC 336

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           +  + L+L   +I         S   L  L+L    ++        N  NLR+L +    
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
           L    +     LS+LT L++S+N  +      +   L  L SL V ++ +     R    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 468 LKNLRSLTLESCKVTANDIKRLQS---RDLPNLVSFR 501
           L +L  LTLE       ++  + +     L  L+  R
Sbjct: 151 LNSLEQLTLEK-----CNLTSIPTEALSHLHGLIVLR 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 7e-28
 Identities = 93/460 (20%), Positives = 163/460 (35%), Gaps = 33/460 (7%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 117 NAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGL-MKLESLNIKWCNCITDSD 172
              + +  + F+ L NL  LDL      +     L  L  + +   SL++   N +    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQ 193

Query: 173 MKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALG 228
                 +  L  L +  +     V  + I  L GL+   L+  E            SAL 
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 229 SLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
            L  L +   +L+      DD  + F+ + ++   +L    I    +         + L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLE 310

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL- 341
           L +C  G         L       L+ T            L +LE ++LS  G+S     
Sbjct: 311 LVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 342 -RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLR 399
            +   G +SLK L+L    +     +    L  L HLD   + +   S  +   + +NL 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 400 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
            L+I       A       LSSL +L ++ N    +   ++ + L  L  L++S  ++  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 460 AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
                   L +L+ L +       N+   L +     L S
Sbjct: 485 LSPTAFNSLSSLQVLNMSH-----NNFFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (256), Expect = 2e-23
 Identities = 80/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
            +  +L    N  +   G  +F     L  LDL RC    I  G    + L  L +L + 
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILT 84

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL-D 222
             N I    +   SGL++L+ L    + +       +  L+ L  LN+    + +  L +
Sbjct: 85  G-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV----LNLGFNEITDECLVHLKGLTNL 278
             S L +L +L+L+  ++    C     +  + +    L+L  N +        K +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 279 ESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSG------LRHLSGLTNLESINL 331
             L L +       +   + GL  L+   L   +  + G         L GL NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 332 SFTGIS---DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
               +    D  +     L+++ S +L +  I    +   +   G  HL+L   +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN-CNLTDKTLELISGLTGL 447
              L++ K L      GG           DL SL  L+LS+N  +      +   G T L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
             L++S + + +    +   L+ L  L  +   + 
Sbjct: 376 KYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 5e-20
 Identities = 66/363 (18%), Positives = 107/363 (29%), Gaps = 24/363 (6%)

Query: 55  QGSSLLSVDLSG-------SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN 107
           +   L  + L               GL  L+    L   +F     +       L GL N
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE-VHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 108 LT--SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           LT         +      +  F  L N+    L   T     + +       + L +  C
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNC 314

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA--ACLDS 223
                     L  L  L                    L  L  L+L    ++    C  S
Sbjct: 315 K-FGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLN 282
                SL YL+L+   +       F  +  L+ L+   + +           L NL  L+
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           +              GL +L+ L+++      +      + L NL  ++LS   +   S 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRS 400
                LSSL+ LN+               L  L  LD     I  S    L++   +L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 401 LEI 403
           L +
Sbjct: 548 LNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 56/235 (23%), Positives = 88/235 (37%), Gaps = 11/235 (4%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           S       ++L          + LK    L           S+  L  L  L     LS 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL----DLS- 355

Query: 114 RRNNAITAQGM--KAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
              N ++ +G   ++  G  +L  LDL     +     N  GL +LE L+ +  N    S
Sbjct: 356 --RNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSL 230
           +      L NL  L IS +    +      GL  L +L + G         D  + L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +L+L++CQL       F+ + SL+VLN+  N          K L +L+ L+   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 9/231 (3%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            + ++L+L    +   G  +      L+ L+LS  ++ +        L++L ++ L+   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRN 394
           I   +L   +GLSSL+ L      +       +  L  L  L++    I       Y  N
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTL----LNLSQNCNLTDKTLELISGLTGLVSL 450
             NL  L++    +       ++ L  + L    L+LS N  +          +  L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR-LHKL 205

Query: 451 NVSNSRITSAGLRH-LKPLKNLRSLTLESCKVT-ANDIKRLQSRDLPNLVS 499
            + N+  +   ++  ++ L  L    L   +     ++++     L  L +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  110 bits (277), Expect = 4e-27
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 19/305 (6%)

Query: 138 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI----SCSKVT 193
           L     +    V  K   +L S    W                 L S  +          
Sbjct: 24  LCLPELLKVSGVC-KRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIG 252
           D  +A      ++  ++L    +  + L  + S    L  L+L   +LSD      +K  
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 253 SLKVLNL-GFNEITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLTGLC--NLKCLEL 307
           +L  LNL G +  ++  L  L    + L+ LNL  C    ++ +          +  L L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 308 SD--TQVGSSGLRHLS-GLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDA-RQITD 362
           S     +  S L  L     NL  ++LS    + +   ++   L+ L+ L+L     I  
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
             L  L  +  L  L +FG  + D     L+  + L  L+I     T      I +  + 
Sbjct: 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQ 319

Query: 423 TLLNL 427
            +  +
Sbjct: 320 EIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  110 bits (276), Expect = 5e-27
 Identities = 49/266 (18%), Positives = 95/266 (35%), Gaps = 11/266 (4%)

Query: 1   MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLL 60
           +  R +SQ +         + +   E F    +Q + L     +    +  I SQ S L 
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQ 121

Query: 61  SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAI 119
           ++ L G  ++D  +  L   SNL  L+ + C   S+  L+ L    S L  L+       
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181

Query: 120 TAQGMKAFA--GLINLVKLDLERCTRI--HGGLVNL-KGLMKLESLNIKWCNCITDSDMK 174
           T + ++         + +L+L    +      L  L +    L  L++     + +   +
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 175 PLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYL 233
               L  L+ L +S C  +    +  L  +  L  L + G  V    L  L    +L +L
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHL 298

Query: 234 NLNRCQLSDDGCEKFSKIGSLKVLNL 259
            +N    +           + ++  +
Sbjct: 299 QINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  108 bits (272), Expect = 2e-26
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 15/260 (5%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L    L  D   +    G +           D+ L        ++ ++L +  I    
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 293 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLA-GLSS 349
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS  +G S+ +L+ L    S 
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 350 LKSLNL-DARQITDTGLAALTS--LTGLTHLDLFG--ARITDSGAAYL-RNFKNLRSLEI 403
           L  LNL      T+  +    +     +T L+L G    +  S  + L R   NL  L++
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 404 CG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288

Query: 463 RHLKPLKNLRSLTLESCKVT 482
           + L   + L  L +     T
Sbjct: 289 QLL--KEALPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 96.5 bits (240), Expect = 3e-22
 Identities = 52/333 (15%), Positives = 100/333 (30%), Gaps = 58/333 (17%)

Query: 4   RDISQQIFNELVYSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVD 63
             ++               +  +       Q +   + P                +  +D
Sbjct: 40  YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMD 99

Query: 64  LSGSDVTDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 122
           LS S +  S L   L  CS LQ+L      ++SD  +  L   SNL  L+    +  +  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLT 180
            ++                              +L+ LN+ WC   T+  ++        
Sbjct: 159 ALQTLL-----------------------SSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 181 NLKSLQIS--CSKVTDSGIAYL-KGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
            +  L +S     +  S ++ L +    L  L+L     +   C      L  L +L+L+
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
           RC                        +I  E L+ L  +  L++L +    + D  L  L
Sbjct: 256 RC-----------------------YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291

Query: 297 TGLC---NLKCLELSDTQVGSSGLRHLSGLTNL 326
                   + C   +     + G +    +  +
Sbjct: 292 KEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 324

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGL 462
           C     D  +        +  ++LS N  +   TL  ++S  + L +L++   R++   +
Sbjct: 77  CPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 463 RHLKPLKNLRSLTLESC-KVTANDIKRLQSRDLPNL 497
             L    NL  L L  C   +   ++ L S     L
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRL 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  106 bits (267), Expect = 6e-27
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
           +  K      L       +T A ++SL+      Y+ L    ++D          ++K L
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLT------YITLANINVTD--LTGIEYAHNIKDL 71

Query: 258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +     T+     + GL+NLE L +    +  + + NL+GL +L  L++S +    S L
Sbjct: 72  TINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 318 RHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
             ++ L  + SI+LS+   I+D  +  L  L  LKSLN+    + D     +     L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 377 LDLFGARITD 386
           L  F   I  
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  103 bits (258), Expect = 1e-25
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 10/167 (5%)

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
           + + +L  I L+   ++D  L  +    ++K L ++    T+     ++ L+ L  L + 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 440
           G  +T      L    +L  L+I      D+ +  I  L  +  ++LS N  +TD  +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMP 154

Query: 441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIK 487
           +  L  L SLN+    +     R ++    L  L   S  +     K
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG--GKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 95.8 bits (239), Expect = 4e-23
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 50  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
           ++  +Q +SL  + L+  +VTD  L  ++   N++ L  N     ++     + GLSNL 
Sbjct: 37  NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLE 91

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
            L     + +T+  +   +GL +L  LD+         L  +  L K+ S+++ +   IT
Sbjct: 92  RLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 170 DSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
             D+ PL  L  LKSL I    V D     ++   KL  L      + 
Sbjct: 151 --DIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 6e-19
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 37/210 (17%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
           + L+  L  S   +   I     ++L  +       ++D  L  +    N+  L+   N 
Sbjct: 24  AYLNGLLGQSSTAN---ITEAQMNSLTYITLANI-NVTD--LTGIEYAHNIKDLTI-NNI 76

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
             T       +GL NL +L +                             +T   +  LS
Sbjct: 77  HAT--NYNPISGLSNLERLRIMG-------------------------KDVTSDKIPNLS 109

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
           GLT+L  L IS S   DS +  +  L K+  ++L         +  L  L  L  LN+  
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQF 168

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDE 267
             + D           L  L      I  +
Sbjct: 169 DGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 1e-14
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            ++  + ++    T+     +   SNL+ L       ++   + +L GL++LT L    +
Sbjct: 66  HNIKDLTINNIHATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS 122

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +     L  +  +DL     I   ++ LK L +L+SLNI++   +   D + +
Sbjct: 123 A-HDDSILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDG-VH--DYRGI 177

Query: 177 SGLTNLKSLQISCSKVTD 194
                L  L      +  
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
              +L  + +    +TD  +  I+   ++  L ++   + T+     ISGL+ L  L + 
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIM 96

Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
              +TS  + +L  L +L  L +       + + ++    LP + S
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNS 140

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  110 bits (277), Expect = 7e-27
 Identities = 49/323 (15%), Positives = 99/323 (30%), Gaps = 50/323 (15%)

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-----K 273
            S    +  L+L+   L      +  +       S+  LNL  N +  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLSGL----- 323
              N+ SLNL    +  +    L          +  L+L      S              
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 324 TNLESINLSFTGISDGSLRKLAGL-----SSLKSLNLDARQITDTGLAALTSL-----TG 373
            ++ S+NL    +   S  +L  +     +++ SLNL    +     A L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 374 LTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL----SSLTL 424
           +T LDL    +     A L         ++ SL +C   L    ++++K L      L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 425 LNLSQN--CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL-----KPLKNLRS 473
           + L  +   N++ +           +  ++ ++ +   I  +    +     +       
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 474 LTLESCKVTANDIKRLQSRDLPN 496
            +L +  +      +    DL  
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNI 340

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  101 bits (254), Expect = 7e-24
 Identities = 58/336 (17%), Positives = 110/336 (32%), Gaps = 57/336 (16%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGLQ 204
                 + SL++   N +       L         ++ SL +S + +       L + L 
Sbjct: 18  TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 205 K----LTLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKI---- 251
                +T LNL G  ++    D L         ++  L+L     S     +F +     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 252 -GSLKVLNLGFNEITDECLVHL-KGL----TNLESLNLDSCGIGDEGLVNLTGL-----C 300
             S+  LNL  N++  +    L + L     N+ SLNL    +  +    L         
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 301 NLKCLELSDTQVGSSGLRHLSGL-----TNLESINLSFTGISDGSLRKLAGL----SSLK 351
           ++  L+LS   +G      L+ +      ++ S+NL    +   SL  L  L      L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 352 SLNLDARQITDTG-------LAALTSLTGLTHLDLFGARITDSGAAYLRNF-----KNLR 399
           ++ LD   + +          AA  ++  +  +D  G  I  S +  + N          
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 400 SLEICGGGLTDAG-----VKHIKDLSSLTLLNLSQN 430
              +    L  A      ++ +     L     +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 54/304 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHL-----KDCSNLQSLDFNFCIQISDGGLEHL-----RGLS 106
             + S+DLS +++     + L        +++ SL+ +    +     + L        +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80

Query: 107 NLTSLSFRRNNAITAQGMKAFAGLI-----NLVKLDLERCTRIHGGLVNLKGLMK----- 156
           N+TSL+   N  ++ +        +      +  LDL             K         
Sbjct: 81  NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 157 LESLNIKWCNCITDSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGL----QKL 206
           + SLN+   N +       L  +      N+ SL +  + +     A L K L      +
Sbjct: 140 ITSLNL-RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 207 TLLNLEGCPVTAACLDSLSAL-----GSLFYLNLNRCQLSDDGCEKFSKIG----SLKVL 257
           T L+L    +       L+ +       +  LNL    L     E    +      L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 258 NLGFN---EITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCL 305
            L ++    ++ E           +  +  ++ +   I     + ++ L           
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 306 ELSD 309
            L +
Sbjct: 319 SLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 67/269 (24%)

Query: 50  DVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT 109
             +A+   ++  +DL  +D +              +L                   +++T
Sbjct: 102 KTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLP------------------ASIT 141

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
           SL+ R N+ +  +       ++  +                      + SLN+   N + 
Sbjct: 142 SLNLRGND-LGIKSSDELIQILAAIPA-------------------NVNSLNL-RGNNLA 180

Query: 170 DSDMKPLSGL-----TNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAA 219
             +   L+        ++ SL +S + +     A L          +  LNL    +   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 220 CLDSLSALG----SLFYLNLNRCQLSDDGCEKFSKIGS-------LKVLNLGFNEITDEC 268
            L++L  L      L  + L+   + +   E+   +G+       + +++    EI    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 269 LVHL-----KGLTNLESLNLDSCGIGDEG 292
            + +     +     +  +L +  +    
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQ 329

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 21/144 (14%)

Query: 366 AALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGGGLTDAGVKHIKDL- 419
              +   G+T LDL    +       L         ++ SL + G  L       +  + 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 420 ----SSLTLLNLSQNCNLTDKTLELISGL-----TGLVSLNVSNSRITSAGLRHL----- 465
               +++T LNLS    L+ K+ + +          +  L++  +  +S           
Sbjct: 76  AAIPANVTSLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 466 KPLKNLRSLTLESCKVTANDIKRL 489
               ++ SL L    +       L
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDEL 158

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  108 bits (272), Expect = 9e-27
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 17/237 (7%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL 209
           +     +    N+K    +TD      + L ++  +  + S +    +  ++ L  +T L
Sbjct: 19  SDDAFAETIKDNLKK-KSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 73

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
            L G  +T   +  L+ L +L +L L+  ++ D        +  LK L+L  N I+D  +
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--I 127

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
             L  L  LESL L +  I D  +  L+ L  L  L L D Q+  S +  L+GLT L+++
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
            LS   ISD  LR LAGL +L  L L +++  +  +   ++L     +      +  
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  102 bits (257), Expect = 9e-25
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 20/270 (7%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           L S +      I    + +       +K +L++ +      V    L  ++ +     + 
Sbjct: 3   LGSETITVPTPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN-SD 57

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
           I    ++ +  L N+  L ++ +K+TD  I  L  L+ L  L L+   V    L SL  L
Sbjct: 58  IKS--VQGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK--DLSSLKDL 111

Query: 228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 287
             L  L+L    +SD        +  L+ L LG N+ITD  +  L  LT L++L+L+   
Sbjct: 112 KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 288 IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGL 347
           I D  +V L GL  L+ L LS   +  S LR L+GL NL+ + L      +  +   + L
Sbjct: 168 ISD--IVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 348 SSLKSL-NLDARQITDTGLAALTSLTGLTH 376
               ++ N D   +T   ++          
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (253), Expect = 4e-24
 Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 23/232 (9%)

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
               NL    +TD   V    L +++ +  ++  I    +  +  L N+  L L+  ++ 
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT 81

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 373
              ++ L+ L NL  + L    + D  L  L  L  LKSL+L+   I+D  +  L  L  
Sbjct: 82  D--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQ 135

Query: 374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 433
           L  L L   +ITD     L     L +L +    ++D  +  +  L+ L  L LS+N ++
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN-HI 190

Query: 434 TDKTLELISGLTG---LVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
           +D     +  L G   L  L + +    +  + H   L    ++      + 
Sbjct: 191 SD-----LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 21/261 (8%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
               +     +      ++D        L+++  +    ++ I +  ++    L N+ KL
Sbjct: 20  DDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSD-IKS--VQGIQYLPNVTKL 73

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 196
            L    ++   +  L  L  L  L +   N + D  +  L  L  LKSL +  + ++D  
Sbjct: 74  FLNG-NKLTD-IKPLANLKNLGWLFLD-ENKVKD--LSSLKDLKKLKSLSLEHNGISD-- 126

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
           I  L  L +L  L L    +T   +  LS L  L  L+L   Q+SD      + +  L+ 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQN 182

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L  N I+D  L  L GL NL+ L L S    ++ + + + L     ++ +D  + +  
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-- 238

Query: 317 LRHLSGLTNLESINLSFTGIS 337
              +S   + E  N+ +    
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 45/236 (19%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
             I    +            NL    + D   V    L ++  +  +++ + S  ++ + 
Sbjct: 12  TPIKQ--IFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQ 65

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            L N+  + L+   ++D  ++ LA L +L  L LD  ++ D  L++L  L  L  L L  
Sbjct: 66  YLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEH 121

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             I+D                          +  +  L  L  L L  N  +TD  + ++
Sbjct: 122 NGISD--------------------------INGLVHLPQLESLYLGNN-KITD--ITVL 152

Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
           S LT L +L++ +++I+   +  L  L  L++L L    ++  D++ L    L NL
Sbjct: 153 SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALA--GLKNL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 17/181 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            +L  + L  + V D  L  LKD   L+SL       ISD  +  L  L  L SL    N
Sbjct: 90  KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESLYLGNN 144

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             IT   +   + L  L  L LE   +I   +V L GL KL++L +   N I+D  ++ L
Sbjct: 145 K-IT--DITVLSRLTKLDTLSLED-NQISD-IVPLAGLTKLQNLYLS-KNHISD--LRAL 196

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           +GL NL  L++   +  +  I +   L    T+ N +G  VT    + +S  G     N+
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT---PEIISDDGDYEKPNV 253

Query: 236 N 236
            
Sbjct: 254 K 254

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (269), Expect = 4e-25
 Identities = 80/451 (17%), Positives = 159/451 (35%), Gaps = 32/451 (7%)

Query: 57  SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
            +    D      T   SGL      + ++SLD +F  +I+  G   LR  +NL  L  +
Sbjct: 5   DASGVCDGRSRSFTSIPSGL-----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILK 58

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSD 172
            +  I      AF  L +L  LDL     + +         L  L+ LN+      T   
Sbjct: 59  SSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNLMGNPYQTLGV 115

Query: 173 MKPLSGLTNLKSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                 LTNL++L+I      ++       GL  L  L ++   +      SL ++  + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           +L L+  + +         + S++ L L    +       L        +   +      
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 351
              +   L  L    L  ++V               S +   + +            +++
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG------KVETVTIR 289

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
            L++    +        + L  +  + +  +++     ++ ++ K+L  L++    + + 
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 412 GVKH---IKDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
            +K+        SL  L LSQN +L    KT E++  L  L SL++S +          +
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQ 407

Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
             + +R L L S       I+ +++     L
Sbjct: 408 WPEKMRFLNLSS-----TGIRVVKTCIPQTL 433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (250), Expect = 1e-22
 Identities = 71/447 (15%), Positives = 157/447 (35%), Gaps = 39/447 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            SL  +DLS + ++          S+L+ L+       + G       L+NL +L     
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
              +      FAGL +L +L+++             LK +  +  L +            
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSE-SAFLLEI 190

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
               L++++ L++  + +     + L   +  + +       +    +S + L  L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 235 LNRCQLSDDGC-------------EKFSKIGSLKVLNLGFNEITDECLVHL-----KGLT 276
           L   ++  D C             +  S++G ++ + +    I    L +        L 
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH---LSGLTNLESINLSF 333
            ++ + +++  +          L +L+ L+LS+  +    L++        +L+++ LS 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 334 TGISD--GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY 391
             +     +   L  L +L SL++           +      +  L+L    I       
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
               + L  L++    L    +     L  L  L +S+N  L   TL   S    L+ + 
Sbjct: 430 ---PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRN-KLK--TLPDASLFPVLLVMK 479

Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLES 478
           +S +++ S        L +L+ + L +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 63/426 (14%), Positives = 132/426 (30%), Gaps = 68/426 (15%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           SSL  ++L G     +  + L    + +NLQ+L        S+       GL++L  L  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +  + +     ++   + ++  L L          +    L  +  L ++    +     
Sbjct: 156 KALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR-DTNLARFQF 213

Query: 174 KPLSGLTNLKSLQISC----------------------------------------SKVT 193
            PL        ++                                           +   
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 194 DSGIAYLKGLQKLTL--LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
              ++ L  ++ +T+  L++    +        S L  +  + +   ++    C     +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 252 GSLKVLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVN--LTGLCNLKCLE 306
            SL+ L+L  N + +E L +        +L++L L    +         L  L NL  L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
           +S                 +  +NLS TGI    ++      +L+ L++    +      
Sbjct: 394 ISRNTFHPMP-DSCQWPEKMRFLNLSSTGIR--VVKT-CIPQTLEVLDVSNNNLDSFS-- 447

Query: 367 ALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
               L  L  L +   ++      +     F  L  ++I    L          L+SL  
Sbjct: 448 --LFLPRLQELYISRNKLKTLPDAS----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 425 LNLSQN 430
           + L  N
Sbjct: 502 IWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 4e-16
 Identities = 49/290 (16%), Positives = 100/290 (34%), Gaps = 20/290 (6%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           ++  L+L+  +++  G        +L+VL L  + I          L +LE L+L    +
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS----FTGISDGSLRK 343
                     L +LK L L      + G+  L   LTNL+++ +     F+ I       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA- 145

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
             GL+SL  L + A  + +    +L S+  + HL L  +        +     ++R LE+
Sbjct: 146 --GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT---------DKTLELISGLTGLVSLNVSN 454
               L       +      + +                   K L  I  L+ +   + + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 455 SRITS---AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
           + +     +    +  L  + ++T+    +    +    S     L   +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 6e-25
 Identities = 97/463 (20%), Positives = 172/463 (37%), Gaps = 39/463 (8%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S L ++ L+G+ +    L      S+LQ L       ++      +  L  L  L+   N
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 134

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW---CNCITDS 171
              + +  + F+ L NL  LDL       I+    +L+ L ++  LN+      N +   
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 172 DMKPLSGLTNLKSLQISCSK----VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 227
                  +  L  L +  +     V  + I  L GL+   L+  E            SAL
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 228 GSLFYLNLNRCQLS------DDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLES 280
             L  L +   +L+      DD  + F+ + ++   +L    I   +   +  G  +LE 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 281 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           +N          L       +LK L  +  + G+        L +LE ++LS  G+S   
Sbjct: 312 VNCKFGQFPTLKLK------SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 341 LRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAY-LRNFKN 397
               +  G +SLK L+L    +     +    L  L HLD   + +          + +N
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSR 456
           L  L+I       A       LSSL +L ++ N +  +  L ++ + L  L  L++S  +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 457 ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           +          L +L+ L + S     N +K +       L S
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMAS-----NQLKSVPDGIFDRLTS 519

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 9e-24
 Identities = 91/481 (18%), Positives = 154/481 (32%), Gaps = 75/481 (15%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            + ++LD +F   +   G         L  L   R   I      A+  L +L  L L  
Sbjct: 28  FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 197
                +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    + 
Sbjct: 86  NPIQSLALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 198 AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL----FYLNLNRCQLSDDGCEKFSKIGS 253
            Y   L  L  L+L    + +     L  L  +      L+L+   ++      F +I  
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 254 LKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVN------LTGLCNLKCLE 306
           L  L L  N  +   +   ++GL  LE   L      +EG +       L GLCNL   E
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 307 LSDTQVGSSGLR----------------------------HLSGLTNLESINLSFTGISD 338
                +                                  +  G  +LE +N  F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 339 GSLRKL----------------AGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLF 380
             L+ L                  L SL+ L+L    ++  G    +    T L +LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +    +      + L  L+     L   +       L +L  L++S   +       
Sbjct: 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG 439

Query: 440 LISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
           + +GL+ L  L ++ +      L      L+NL  L L         +++L      +L 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-----CQLEQLSPTAFNSLS 494

Query: 499 S 499
           S
Sbjct: 495 S 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 4e-19
 Identities = 74/372 (19%), Positives = 123/372 (33%), Gaps = 26/372 (6%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L  +   +    L  N    I  G  + +     L  L+ R N            GL 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 132 NLVKLDLE--------RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 183
            L    L            +     +     + +E   + + +   D  +   + LTN+ 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 184 SLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 242
           S  +    +      +Y  G Q L L+N +        L SL        L     +  +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK------RLTFTSNKGGN 339

Query: 243 DGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC 300
                   + SL+ L+L  N ++    C     G T+L+ L+L   G+      N  GL 
Sbjct: 340 AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLE 396

Query: 301 NLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            L+ L+   + +   S       L NL  +++S T           GLSSL+ L +    
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 360 ITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
             +  L    T L  LT LDL   ++         +  +L+ L +    L          
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 419 LSSLTLLNLSQN 430
           L+SL  + L  N
Sbjct: 517 LTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 66/343 (19%), Positives = 121/343 (35%), Gaps = 35/343 (10%)

Query: 20  LTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKD 79
           +  +   AF++  L  L L       +     I    + L    L   +  + G +   D
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFD 247

Query: 80  CS--------NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
            S         ++     +     D  ++    L+N++S S         +      G  
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 132 NLVKLDLERCTRIHGGLVNLK----------------GLMKLESLNIKWCNCITDSDMKP 175
           +L  ++ +        L +LK                 L  LE L++   N ++      
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCS 366

Query: 176 LS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA---LGSL 230
            S  G T+LK L +S + V     +   GL++L  L+ +   +    +   S    L +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNL 423

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESLNLDSCGIG 289
            YL+++           F+ + SL+VL +  N   +  L      L NL  L+L  C + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
                    L +L+ L ++  Q+ S        LT+L+ I L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  101 bits (254), Expect = 1e-23
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 48/372 (12%)

Query: 108 LTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNC 167
           L  L    N A+ AQ       + NL  L+  +  +   G +  + L   E L+  + + 
Sbjct: 3   LVGLLSAHNRAVLAQ---LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHY 59

Query: 168 ITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQ----KLTLLNLEGCPVTAACLD 222
              +       L++L+ L ++  ++T      +   L      L  +NL  C +  A L 
Sbjct: 60  EFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 223 SL-SALGSLFYLNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVH----L 272
           +L         L L    L  + C+    +       +  L L  N +T   +      L
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 273 KGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSGL----T 324
            G T++  L+L   G+GDEGL      L     L+ L ++    G +    L+       
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 325 NLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTS-LTGLTH 376
           +LE ++L F  +S    + L        G + +     +   +++     L+     L  
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN 432
            D             ++    L   ++                 +    +  L      +
Sbjct: 300 WDRAR----------VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 433 LTDKTLELISGL 444
            +          
Sbjct: 350 GSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 65/357 (18%), Positives = 118/357 (33%), Gaps = 54/357 (15%)

Query: 173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 232
             P+  L  L++ Q    K+   G   L   + L  L             S   L SL  
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE--FQNQRFSAEVLSSLRQ 76

Query: 233 LNLNRCQLSDDGCEKFSKI-----GSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSC 286
           LNL   +++   C   + +      +L  +NL   ++    L  L         L L   
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 287 GIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHLS-GL---TNLESINLSFTGIS 337
            +G E   +L  L     C +  L LS+  + ++G+  L  GL   T++  ++L  TG+ 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 338 DGSLRKLAGL----SSLKSLNLDARQITDTGLAALTSL----TGLTHLDLFGARITDSGA 389
           D  L  LA        L+ LN+      DT   AL         L  L L+   ++  G 
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256

Query: 390 AYL-------RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL 438
             L            +      G  +++     +    ++L+S     + ++  L     
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELL---- 312

Query: 439 ELISGLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKVTANDIKRLQS 491
                       ++ +SR  +       + L+    +R+L  +     +        
Sbjct: 313 ----------LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 55/351 (15%), Positives = 105/351 (29%), Gaps = 82/351 (23%)

Query: 57  SSLLSVDLSGSDVTDSGLIH----LKDCS-NLQSLDFNFCIQISDGGLEHL-RGLSNLTS 110
           SSL  ++L+G  +T          L      L  ++   C Q+   GL  L         
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARK 130

Query: 111 LSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           L  + N+ +  +  K    L     L  ++C               + +L +   N +T 
Sbjct: 131 LGLQLNS-LGPEACKDLRDL-----LLHDQCQ--------------ITTLRL-SNNPLTA 169

Query: 171 SDMKPLS-GL---TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA 226
           + +  L  GL   T++  L +  + + D G+  L                       L  
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL--------------------AAQLDR 209

Query: 227 LGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITD-------ECLVHLKGL 275
              L  LN+      D      ++      SL++L+L FNE++        +     +G 
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 276 TNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
             +     +   + +   V L+    NL   + +  Q              L   +L  +
Sbjct: 270 ARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH----------LELLLRDLEDS 319

Query: 335 GISDGSLRKLAGL----SSLKSLNLDARQITDTG----LAALTSLTGLTHL 377
             +  +  + A L      +++L                       G  H 
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 57/287 (19%)

Query: 30  DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHL-----KDCSNLQ 84
             AL ++ L     ++   +  +         + L  + +       L      D   + 
Sbjct: 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 85  SLDFNFCIQISDGGLEHL-RGLS---NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +L  +    ++  G+  L  GL+   ++T LS   +  +  +G++  A            
Sbjct: 159 TLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSL-LHTGLGDEGLELLAAQ---------- 206

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL----TNLKSLQISCSKVTDSG 196
                     L    +L+ LN+   N   D+    L+       +L+ L +  ++++  G
Sbjct: 207 ----------LDRNRQLQELNV-AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255

Query: 197 IAYL-------KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS 249
              L       +G  ++ +   EG  V+      LS +              D    +  
Sbjct: 256 RQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV-------QRNLNSWDRA--RVQ 306

Query: 250 KIGSLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEG 292
           +   L + +L  +             L+    + +L       G   
Sbjct: 307 RHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPS 353

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (249), Expect = 2e-22
 Identities = 70/410 (17%), Positives = 139/410 (33%), Gaps = 39/410 (9%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAG-----LINLVKLDLERC--TRIHGGLVNLKGLMKLE 158
           SNL       +  I  Q    + G     L N   +  +     ++   L  L    ++E
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVE 78

Query: 159 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA 218
            LN+     I + D    +    ++ L +  + +        + +  LT+L LE   +++
Sbjct: 79  LLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                      L  L+++   L     + F    SL+ L L  N +T    V L  + +L
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSL 194

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG--LTNLESINLSFTGI 336
              N+    +       L     ++ L+ S        +  + G     L  + L    +
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNS-----INVVRGPVNVELTILKLQHNNL 244

Query: 337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 396
           +D     L     L  ++L   ++          +  L  L +   R+  +   Y +   
Sbjct: 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 456
            L+ L++    L     ++      L  L L  N ++   TL+ +S    L +L +S++ 
Sbjct: 302 TLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHN-SIV--TLK-LSTHHTLKNLTLSHND 356

Query: 457 ITSAGLRHLKPLKNLRSLTLE----SCKVTANDIKRLQSRDLPNLVSFRP 502
                LR L   +N+    ++     CK+       L  ++       R 
Sbjct: 357 WDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 4e-18
 Identities = 59/438 (13%), Positives = 133/438 (30%), Gaps = 61/438 (13%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
             +  ++L+   + +           +Q L   F   I        + +  LT L     
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL-ER 132

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N +++     F     L  L +                           N +   +    
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSN-------------------------NNLERIEDDTF 167

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
              T+L++LQ+S +++T   ++ +  L    +            L +L+   ++  L+ +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL--------LSTLAIPIAVEELDAS 219

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
              ++            L +L L  N +TD     L     L  ++L    +        
Sbjct: 220 HNSINVVRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             +  L+ L +S+ ++  +   +   +  L+ ++LS   +     R       L++L LD
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLD 332

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEI------------ 403
              I       L++   L +L L       +S  A  RN       +             
Sbjct: 333 HNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 404 ---CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
              C         + ++ ++  +++   Q         + I+ +  L         +   
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449

Query: 461 GLRHLKPLKNLRSLTLES 478
           G   L+   N     ++ 
Sbjct: 450 GNEQLEAEVNELRAEVQQ 467

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 44/218 (20%), Positives = 87/218 (39%), Gaps = 16/218 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + + P  GL N     +    VTD  +   K L  +   N +   + +  L  +    +L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNL 65

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L+L+  Q+SD        +  L+ L++  N + +  L  +     L  L LD+  + D
Sbjct: 66  KELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSA-CLSRLFLDNNELRD 120

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
               +L  L NL+ L + + ++    +  L  L+ LE ++L    I++     L  L  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKV 174

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHL-DLFGARITDS 387
             ++L  ++  +  +     L     + D  G  I+  
Sbjct: 175 NWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 42/237 (17%)

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
             I    +    GL N    NL    + D  LV+   L  ++     ++ + S  L  + 
Sbjct: 7   TPINQ--VFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQ 60

Query: 322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
             TNL+ ++LS   ISD  L  L  L+ L+ L+++  ++ +  L  + S   L+ L L  
Sbjct: 61  FFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFLDN 115

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
             + D                             +  L +L +L++  N  L    + ++
Sbjct: 116 NELRD--------------------------TDSLIHLKNLEILSIRNN-KLKS--IVML 146

Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
             L+ L  L++  + IT+     L  LK +  + L   K     +K      + N V
Sbjct: 147 GFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 8e-16
 Identities = 38/231 (16%), Positives = 90/231 (38%), Gaps = 19/231 (8%)

Query: 74  LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 133
           +      +N    +      ++D  L   + LS + + +   +N  +   +       NL
Sbjct: 12  VFPDPGLANAVKQNLGKQ-SVTD--LVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNL 65

Query: 134 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
            +L L    +I   L  LK L KLE L++   N + +  +  +     L  L +  +++ 
Sbjct: 66  KELHLSHN-QISD-LSPLKDLTKLEELSVNR-NRLKN--LNGIPSA-CLSRLFLDNNELR 119

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           D     L  L+ L +L++    + +  +  L  L  L  L+L+  ++++      +++  
Sbjct: 120 D--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESL-NLDSCGIGDEGLVNLTGLCNLK 303
           +  ++L   +  +E + +   L    ++ + D   I    + N     +  
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 47/230 (20%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           S + + +   S++    L  ++  +NL+ L  +   QISD  L  L+ L+ L  LS  RN
Sbjct: 41  SGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN-QISD--LSPLKDLTKLEELSVNRN 95

Query: 117 --------------------NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK 156
                               N +      +   L NL  L +    ++   +V L  L K
Sbjct: 96  RLKNLNGIPSACLSRLFLDNNELR--DTDSLIHLKNLEILSIRNN-KLKS-IVMLGFLSK 151

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL-TLLNLEGCP 215
           LE L++   N IT+     L+ L  +  + ++  K  +  + Y   L    T+ + +G  
Sbjct: 152 LEVLDL-HGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           ++      +S  GS     +            +        ++  F+E  
Sbjct: 209 IS---PYYISNGGSYVDGCV-----------LWELPVYTDEVSYKFSEYI 244

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 57/350 (16%), Positives = 108/350 (30%), Gaps = 25/350 (7%)

Query: 83  LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC- 141
              +  +   Q    G E +  L+N   ++F+ +  +             +  L+L    
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80

Query: 142 -TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              I            ++ L +   N I          +  L  L +  + ++       
Sbjct: 81  IEEIDTYA--FAYAHTIQKLYM-GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
               KLT L++    +     D+  A  SL  L L+  +L+       S I SL   N+ 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 194

Query: 261 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL 320
           +N ++      L     +E L+     I     V       L  L+L    +  +    L
Sbjct: 195 YNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTDTAW--L 244

Query: 321 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 380
                L  ++LS+  +          +  L+ L +   ++          +  L  LDL 
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLS 303

Query: 381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
              +          F  L +L +    +       +    +L  L LS N
Sbjct: 304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 18/226 (7%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 334
           L N + +   +  +       L     ++ L L+D Q+        +    ++ + + F 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I          +  L  L L+   ++        +   LT L +    +        + 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             +L++L++    LT      +  + SL   N+S N       L  ++    +  L+ S+
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 214

Query: 455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS-RDLPNLVS 499
           + I             L  L L+      N++       + P LV 
Sbjct: 215 NSINVV---RGPVNVELTILKLQH-----NNLTDTAWLLNYPGLVE 252

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 6/180 (3%)

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           L        +++           +   L++ K +      +     A L S   +  L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 439
              +I +           ++ L +    +        +++  LT+L L +N +L+     
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRG 135

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           +      L +L++SN+ +        +   +L++L L S     N +  +    +P+L  
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-----NRLTHVDLSLIPSLFH 190

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 47/330 (14%), Positives = 95/330 (28%), Gaps = 66/330 (20%)

Query: 58  SLLSVDLSGSDVTDSGLIH----LKDCSNLQSLDFNFCIQISDGGLEH----LRGLSNLT 109
           S+    L    +T          L +  +++ +  +    I           +    +L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLE 63

Query: 110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCIT 169
              F  +        +    L  L++               L    KL ++ +   N   
Sbjct: 64  IAEFS-DIFTGRVKDEIPEALRLLLQA--------------LLKCPKLHTVRL-SDNAFG 107

Query: 170 DSDMKPLSGL----TNLKSLQISCSKVTDSGIAYL-------------KGLQKLTLLNLE 212
            +  +PL       T L+ L +  + +     A +             K    L  +   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 213 GCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEK-----FSKIGSLKVLNLGFNE 263
              +    +     +  +   L  + + +  +  +G E       +    LKVL+L  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 264 ITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNL------TGLCNLKCLELSDTQVG 313
            T          LK   NL  L L+ C +   G   +           L+ L L   ++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 314 SSGLRHL-----SGLTNLESINLSFTGISD 338
              +R L       + +L  + L+    S+
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 93.6 bits (233), Expect = 6e-21
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 53/269 (19%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKC 304
           S++  +L  + IT E        L    +++ + L    IG E        +    +L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
            E SD   G         L  L              L+ L     L ++ L       T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTA 110

Query: 365 LAALTSL----TGLTHLDLFGARITDSGAAYL-------------RNFKNLRSLEICGGG 407
              L       T L HL L    +     A +             +N   LRS+      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 408 LTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTL-----ELISGLTGLVSLNVSNSRIT 458
           L +  +K      +    L  + + QN  +  + +     E ++    L  L++ ++  T
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 459 SAGLRH----LKPLKNLRSLTLESCKVTA 483
             G       LK   NLR L L  C ++A
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 46/296 (15%), Positives = 87/296 (29%), Gaps = 79/296 (26%)

Query: 33  LQDLCLGQYPGVNDKWMDVIAS---QGSSLLSVDLSGSDVTDSGLIH----LKDCSNLQS 85
             D+  G+      + + ++     +   L +V LS +    +        L   + L+ 
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 86  LDFNFCIQISDGGLEHL-------------RGLSNLTSLSFRRNNAITAQGMKAFAGLIN 132
           L  +    +       +             +    L S+   RN  +    MK +A    
Sbjct: 127 LYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKT-- 182

Query: 133 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP-----LSGLTNLKSLQI 187
                              +    L ++ +   N I    ++      L+    LK L +
Sbjct: 183 ------------------FQSHRLLHTVKM-VQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +  T  G + L                      +L +  +L  L LN C LS  G   
Sbjct: 224 QDNTFTHLGSSALA--------------------IALKSWPNLRELGLNDCLLSARGAAA 263

Query: 248 FSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEG 292
                       L+ L L +NEI  + +  L     + + +L  L L+     +E 
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 4e-21
 Identities = 63/459 (13%), Positives = 138/459 (30%), Gaps = 60/459 (13%)

Query: 75  IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           + L +   +  L    F    ++ D     +  L+ L  LSF  ++   +  +     L 
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPD----AIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT--NLKSLQISC 189
             +  + +   R+H   + L    +L   ++       + +MKP+   +  +LK  QI  
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 190 SKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACL-------------------DSLSALGS 229
                + I   ++ L KL ++     P T   +                    S S L  
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 230 LFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH---------LKGLTNLES 280
           L  + L  C       +    +  L+ LN+  N       +                ++ 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 281 LNLDSC---GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 337
             +              +L  +  L  L+    +V    L        L  + L +  I 
Sbjct: 553 FYMGYNNLEEFPASA--SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 338 DGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITD-----SGAAY 391
           +      A    ++ L     ++     +    S+  +  +D    +I       S +  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC------NLTDKTLELISGLT 445
                N  ++ +    +     +     S ++ + LS N       N             
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 446 GLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVT 482
            L ++++  +++TS     R    L  L ++ +     +
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATT-LPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 3e-20
 Identities = 60/430 (13%), Positives = 143/430 (33%), Gaps = 45/430 (10%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           ++  + LQ +        ++    +     +    +         +   +++ L +L  +
Sbjct: 444 IQRLTKLQIIY------FANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDV 496

Query: 137 DLERCTRIH------GGLVNLKGLM----KLESLNIKWCNCITDSDMKPLSGLTNLKSLQ 186
           +L  C  +         L  L+ L     +  S      +    +D         ++   
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD--EDTGPKIQIFY 554

Query: 187 ISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
           +  + + +    A L+ + KL LL+     V    L++      L  L L+  Q+ +   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 246 EKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDE-----GLVNLTGL 299
           +  +    ++ L    N++     + + K +  + S++     IG E       ++    
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSSLKS 352
            N   + LS  ++        +  + + +I LS    T I + SL+           L +
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 353 LNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD--SGAAYLRNFKNL---RSLEICGG 406
           ++L   ++T        T+L  L+++D+     +   +        K        +  G 
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 466
            +       I    SL  L +  N ++     +L      L  L+++++   S  +  + 
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL---TPQLYILDIADNPNISIDVTSVC 848

Query: 467 PLKNLRSLTL 476
           P        L
Sbjct: 849 PYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 47/406 (11%), Positives = 118/406 (29%), Gaps = 34/406 (8%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLN 161
           L     +T LS     A       A   L  L  L     +    G +     +  +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
            +            L     L    +    +       +K ++K + ++L+   +     
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 222 ------DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
                  ++  L  L  +       +       +     +  N  + +  +   +    L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            +L  + L +C    +    L  L  L+ L ++  +             +   +   +T 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR-----------GISAAQLKADWTR 539

Query: 336 ISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN 394
           ++D           ++   +    + +    A+L  +  L  LD    ++    A     
Sbjct: 540 LADD----EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGT 593

Query: 395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD-KTLELISGLTGLVSLNVS 453
              L  L++    + +           +  L  S N  L     +     +  + S++ S
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFS 652

Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            ++I S G      + + + +   +  ++ N+I++  +        
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 38/332 (11%), Positives = 98/332 (29%), Gaps = 34/332 (10%)

Query: 54  SQGSSLLSVDLSGSDVTDSGL-IHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLS 112
             G  +    +  +++ +      L+    L  LD     ++    LE       LT L 
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRH--LEAFGTNVKLTDLK 601

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITD 170
              N  I        A    +  L      ++     + N K +  + S++  + N I  
Sbjct: 602 LDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSY-NKIGS 658

Query: 171 -----SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA------- 218
                S         N  ++ +S +++             ++ + L    +T+       
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 219 ACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGL 275
               +      L  ++L   +L+      + + +  L  +++ +N  +      ++   L
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778

Query: 276 TNL---ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESIN 330
                    + +   I  +    +T   +L  L++         +R +       L  ++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-----IRKVDEKLTPQLYILD 833

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
           ++        +  +          L   +  D
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.4 bits (235), Expect = 6e-21
 Identities = 70/360 (19%), Positives = 123/360 (34%), Gaps = 38/360 (10%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
           N                ++ + L  L SL+    + ITD  M  +  LT L  L  + + 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCH-NSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 251
           +T      L     LT L  +   +T      ++ L  L YLN +  +L+       S+ 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLD---VSQN 126

Query: 252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
             L  LN   N +T+   + +   T L  L+           +++T    L  L+ S  +
Sbjct: 127 PLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNK 181

Query: 312 VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
           +       +S    L  +N     I+   L        L  L+  + ++T+     +T L
Sbjct: 182 ITEL---DVSQNKLLNRLNCDTNNITKLDL---NQNIQLTFLDCSSNKLTE---IDVTPL 232

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           T LT+ D     +T+   +       L +L      L +  + H   L         +  
Sbjct: 233 TQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
            L       ++  T L  L+   + IT      L     L  L L + ++T  D+     
Sbjct: 290 ELD------VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSHNTK 340

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 85/441 (19%), Positives = 153/441 (34%), Gaps = 69/441 (15%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
             S   +  ++  +  I  +  + L SLD +    I+D  +  +  L+ LT L    N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSN-- 74

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG 178
                        N+  LDL + T              L  L     N +T+     ++ 
Sbjct: 75  -------------NITTLDLSQNT-------------NLTYLACD-SNKLTNL---DVTP 104

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
           LT L  L    +K+T   ++       LT LN     +T      +S    L  L+ +  
Sbjct: 105 LTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTE---IDVSHNTQLTELDCHLN 158

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
           +         +    L  L+  FN+IT+   + +     L  LN D+  I     ++L  
Sbjct: 159 KKITKL--DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQ 210

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 358
              L  L+ S  ++       ++ LT L   + S   +++     ++ LS L +L+    
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT 264

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
            + +  L   T L           +  D     + +   L  L+    G+T+     +  
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITE---LDLSQ 316

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
              L  L L+    LT   L+ +S  T L SL+  N+ I       +  +  L +     
Sbjct: 317 NPKLVYLYLNNT-ELT--ELD-VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAE 370

Query: 479 CKVTANDIKRLQSRDLPNLVS 499
            +      + L +  L   VS
Sbjct: 371 GQTITMPKETLTNNSLTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 66/406 (16%), Positives = 151/406 (37%), Gaps = 45/406 (11%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           + L  +  + +++T    + L   +NL  L  +   ++++     +  L+ LT L+    
Sbjct: 64  TGLTKLICTSNNITT---LDLSQNTNLTYLACDSN-KLTN---LDVTPLTKLTYLNCD-T 115

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
           N +T       +    L  L+  R        +++    +L  L+   C+         +
Sbjct: 116 NKLTKLD---VSQNPLLTYLNCARN---TLTEIDVSHNTQLTELD---CHLNKKITKLDV 166

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +  T L +L  S +K+T+  ++     + L  LN +   +T      L+    L +L+ +
Sbjct: 167 TPQTQLTTLDCSFNKITELDVS---QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             +L++      + +  L   +   N +T+   + +  L+ L +L+     + +  L + 
Sbjct: 221 SNKLTE---IDVTPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
           T L   +       +        ++  T L  ++    GI++  L +      L  L L+
Sbjct: 275 TQLIYFQAEGCRKIKELD-----VTHNTQLYLLDCQAAGITELDLSQ---NPKLVYLYLN 326

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
             ++T+  ++  T    L  L    A I D  +  +     L +     G       + +
Sbjct: 327 NTELTELDVSHNTK---LKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETL 381

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
              +SLT+       +     + +  G  G+   + + + IT   L
Sbjct: 382 T-NNSLTIAVSPDLLDQFGNPMNIEPGDGGV--YDQATNTITWENL 424

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 7e-21
 Identities = 69/380 (18%), Positives = 128/380 (33%), Gaps = 34/380 (8%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +++  +D +    I++        L +L  L   +           F GL +L+ L L+ 
Sbjct: 30  AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP--LSGLTNLKSLQISCSKVTD-S 195
               ++  G     GL  LE L +     +  + +       LT+L+ L +  + +    
Sbjct: 89  NQFLQLETGA--FNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF----------YLNLNRCQLSDDGC 245
             ++   +++  +L+L    V + C + L                   ++N   L  + C
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 246 EKFSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-- 300
               K  S+  L+L  N       +        T ++SL L +         +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 301 ----------NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
                      +K  +LS +++ +      S  T+LE + L+   I+        GL+ L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 410
             LNL    +         +L  L  LDL    I   G        NL+ L +    L  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 411 AGVKHIKDLSSLTLLNLSQN 430
                   L+SL  + L  N
Sbjct: 386 VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.6 bits (194), Expect = 8e-16
 Identities = 65/356 (18%), Positives = 118/356 (33%), Gaps = 41/356 (11%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 210
              L  L+ L ++              GL++L  L++  ++          GL  L +L 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109

Query: 211 LEGCPVTAACL--DSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 267
           L  C +  A L  +    L SL  L L    +        F  +    VL+L FN++   
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 268 CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 327
           C   L          L               L ++   ++++  +G     +    T++ 
Sbjct: 170 CEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 328 SINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           +++LS   F              + ++SL L       +     T+     +    G   
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDPDNFTFKGLEA 274

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 444
           +            +++ ++    +           + L  L L+QN  +         GL
Sbjct: 275 S-----------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGL 322

Query: 445 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR---DLPNL 497
           T L+ LN+S + + S   R  + L  L  L L       N I+ L  +    LPNL
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY-----NHIRALGDQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 56/291 (19%), Positives = 95/291 (32%), Gaps = 29/291 (9%)

Query: 223 SLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           S S L  L +L + +           F  + SL +L L +N+          GL NLE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 282 NLDSCGIGDEGLVN--LTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLS---FTG 335
            L  C +    L       L +L+ L L D  +           +     ++L+      
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 336 ISDGSLRKLAG-------LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           I +  L    G       LSS+   +++   +           T +T LDL G    +S 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           A    +      ++      +                +     N T K LE     +G+ 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSY---NMGSSFGHTNFKDPD---NFTFKGLEA----SGVK 278

Query: 449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           + ++S S+I +          +L  LTL       N+I ++       L  
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-----NEINKIDDNAFWGLTH 324

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 30/182 (16%), Positives = 60/182 (32%), Gaps = 5/182 (2%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT-GLAALTSLTGLTHLDLFGA 382
            ++  ++LS   I++ +    + L  L+ L ++ +             L+ L  L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 383 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH--IKDLSSLTLLNLSQNCNLTDKTLEL 440
           +             NL  L +    L  A +     K L+SL +L L  N N+       
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPAS 148

Query: 441 I-SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
               +     L+++ +++ S     L   +      L    +T  D+             
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 500 FR 501
           F+
Sbjct: 209 FK 210

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 400
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++   
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
             + L+  +NL    L       N       RD 
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 53/301 (17%), Positives = 110/301 (36%), Gaps = 21/301 (6%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
             +  +  +    +  A      +  ++  L+L+   LS       +    L++LNL  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 263 EITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG 322
            + +   + L+ L+ L +L+L++  + +     L    +++ L  ++  +         G
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL-TSLTGLTHLDLFG 381
             N+    L+   I+          S ++ L+L   +I     A L  S   L HL+L  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 382 ARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-E 439
             I D  G         L++L++    L   G    +  + +T ++L  N  L    + +
Sbjct: 179 NFIYDVKGQVVF---AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNN-KLV--LIEK 231

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            +     L   ++  +      LR     KN R  T+    V     +  +   +P L  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 500 F 500
           +
Sbjct: 291 Y 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 52/291 (17%), Positives = 107/291 (36%), Gaps = 17/291 (5%)

Query: 154 LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 213
             + +   +   + +  +         N+K L +S + ++    A L    KL LLNL  
Sbjct: 9   GNRYKIEKV-TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 214 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK 273
             +       L +L +L  L+LN   + +          S++ L+   N I+    V   
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCS 117

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLS 332
                +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL 392
           +  I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A L
Sbjct: 178 YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-L 233

Query: 393 RNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           R  +NL   ++ G G               +  +       LT +  E  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 47/326 (14%), Positives = 107/326 (32%), Gaps = 23/326 (7%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 259
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEI 403
                   D  A +      L     
Sbjct: 290 HYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
           N  L +     +  L+ L +L+++N+ +       L    ++ +L   +     N+I R+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN-----NNISRV 114

Query: 490 QSRDLPNL 497
                   
Sbjct: 115 SCSRGQGK 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 4/227 (1%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           + ++LNL  N+I    +   K L +LE L L    I    +    GL NL  LEL D ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSL 371
            +        L+ L+ + L    I          + SL+ L+L + ++++     A   L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 431
           + L +L+L    + +     L     L  L++ G  L+       + L  L  L + Q+ 
Sbjct: 185 SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS- 241

Query: 432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
            +          L  LV +N++++ +T        PL +L  + L  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 3/226 (1%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             LLNL    +    ++S   L  L  L L+R  +       F+ + +L  L L  N +T
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLT 324
                    L+ L+ L L +  I          + +L+ L+L +  ++         GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 384
           NL  +NL+   +    +  L  L  L  L+L    ++     +   L  L  L +  ++I
Sbjct: 186 NLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 430
                    N ++L  + +    LT         L  L  ++L  N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I    +     L +L+ LQ+S + +    I    GL  L  L L    +T     +  
Sbjct: 74  NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 284
            L  L  L L    +       F++I SL+ L+LG    ++       +GL+NL  LNL 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C + +  + NLT L  L  L+LS   + +       GL +L+ + +  + I        
Sbjct: 194 MCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
             L SL  +NL    +T       T L  L  + L  
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 28/229 (12%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +N + L+ +   QI    +   + L +L  L   RN+ I    + AF GL NL  L+L  
Sbjct: 64  TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121

Query: 141 C--TRIH----GGLVNLK------------------GLMKLESLNIKWCNCITDSDMKPL 176
              T I       L  LK                   +  L  L++     ++       
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            GL+NL+ L ++   + +  I  L  L KL  L+L G  ++A    S   L  L  L + 
Sbjct: 182 EGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
           + Q+       F  + SL  +NL  N +T         L +LE ++L  
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 12/201 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           N + L L + Q+    +     L +LE + LS   I    +    GL++L +L L   ++
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDL 419
           T     A   L+ L  L L    I    +       +LR L++     L+       + L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
           S+L  LNL+   NL    +  ++ L  L  L++S + +++      + L +L+ L +   
Sbjct: 185 SNLRYLNLAMC-NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ- 240

Query: 480 KVTANDIKRLQS---RDLPNL 497
               + I+ ++     +L +L
Sbjct: 241 ----SQIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           TN   +NL    I    +     L  L+ L L    I    + A   L  L  L+LF  R
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T            L+ L +    +          + SL  L+L +   L+  +     G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           L+ L  LN++   +    + +L PL  L  L L       N +  ++      L+ 
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSG-----NHLSAIRPGSFQGLMH 232

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 57  SSLLSVDLSG---SDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF 113
           ++L +++L     + + +   ++L   S L+ L       I          + +L  L  
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYL---SKLKELWLRNN-PIESIPSYAFNRIPSLRRLDL 167

Query: 114 RRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDS 171
                ++     AF GL NL  L+L  C    I     NL  L+KL+ L++   N ++  
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSG-NHLSAI 222

Query: 172 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                 GL +L+ L +  S++          LQ L  +NL    +T    D  + L  L 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 232 YLNLN 236
            ++L+
Sbjct: 283 RIHLH 287

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 50/404 (12%), Positives = 127/404 (31%), Gaps = 28/404 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           +  +         +        +   N+  L    N  ++       A    L  L+L  
Sbjct: 10  NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSS 67

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
              ++   ++L+ L  L +L++   N + +     L    ++++L  + + ++    +  
Sbjct: 68  N-VLY-ETLDLESLSTLRTLDLNN-NYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNL 259
           +G +    + L    +T            + YL+L   ++   +  E  +   +L+ LNL
Sbjct: 120 QGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGL 317
            +N I D  +        L++L+L S  +        +      +  + L + ++     
Sbjct: 177 QYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNNKL-VLIE 230

Query: 318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHL 377
           + L    NLE  +L   G   G+LR      + +   +  + +           T  T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 378 DLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNL 433
                   D  A +      L+  E        +  + ++    + +    ++  +    
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QY 348

Query: 434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
                ++       ++L      +        +    L     +
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 57/338 (16%), Positives = 117/338 (34%), Gaps = 20/338 (5%)

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
           + +   +   + +  +         N+K L +S + ++    A L    KL LLNL    
Sbjct: 11  RYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGL 275
           +       L +L +L  L+LN   + +          S++ L+   N I+    V     
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSRG 119

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSG-LTNLESINLSFT 334
              +++ L +  I     ++      ++ L+L   ++ +     L+     LE +NL + 
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 335 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
            I    ++     + LK+L+L + ++   G     S  G+T + L   ++     A LR 
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRF 235

Query: 395 FKNLRSLEICGGGL-TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 453
            +NL   ++ G G               +  +       LT +  E     T     +  
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE---CTVPTLGHYG 292

Query: 454 NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQS 491
                         L  L+           ++ +RL+ 
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 16/321 (4%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 238
               K  +++ S +  +  +  +    +  L+L G P++      L+    L  LNL+  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 239 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG 298
            L +        + +L+ L+L  N + +     L    ++E+L+  +  I     V+ + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISR---VSCSR 118

Query: 299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDA 357
               K + L++ ++           + ++ ++L    I   +  +LA    +L+ LNL  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
             I D  +        L  LDL   ++   G    ++   +  + +    L     K ++
Sbjct: 179 NFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALR 234

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV-SNSRITSAGLRHLKPLKNLRSLTL 476
              +L   +L  N        +  S    + ++   +  ++T                  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 477 ESCKVTANDIKRLQSRDLPNL 497
               + A    RL +      
Sbjct: 295 CCEDLPAPFADRLIALKRKEH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 21/274 (7%)

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 281
           +            +    L            ++K L+L  N ++      L   T LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL 341
           NL S  +     ++L  L  L+ L+L++       ++ L    ++E+++ +   IS  S 
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSC 116

Query: 342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRS 400
            +       K++ L   +IT          + + +LDL    I   + A    +   L  
Sbjct: 117 SR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 401 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 460
           L +    + D  VK     + L  L+LS N  L     E      G+  +++ N+++   
Sbjct: 174 LNLQYNFIYD--VKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLI 229

Query: 461 GLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL 494
             + L+  +NL    L       N       RD 
Sbjct: 230 E-KALRFSQNLEHFDLRG-----NGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 59/466 (12%), Positives = 129/466 (27%), Gaps = 48/466 (10%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
            ++  +DLSG+ ++      L   + L+ L+ +    + +     L  LS L +L    N
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYE--TLDLESLSTLRTLDLNNN 90

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  ++      ++  L       I    V+       +++ +   N IT       
Sbjct: 91  Y------VQELLVGPSIETLHAAN-NNISR--VSCSRGQGKKNIYLAN-NKITMLRDLDE 140

Query: 177 SGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
              + ++ L +  +++   +          L  LNL+   +    +        L  L+L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDL 198

Query: 236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD----SCGIGDE 291
           +  +L+  G  +F     +  ++L  N++       L+   NLE  +L      CG   +
Sbjct: 199 SSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 292 GLVNLTGLCNLKC-------------------LELSDTQVGSSGLRHLSGLTNLESINLS 332
                  +  +                                       L  L+    +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 333 FTGISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
                     +L       +  + ++    Q                 L+     + +  
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 448
           +   R    L        G  +      ++ S L LL             +       + 
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435

Query: 449 SLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSR 492
             ++   + T        LK L     L L S   T  ++   +  
Sbjct: 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
           +        +  + +  + A+  ++  N++ L++ G  L+      +   + L LLNLS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 489
           N  L +     +  L+ L +L+++N+ +       L    ++ +L   +     N+I R+
Sbjct: 68  N-VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN-----NNISRV 114

Query: 490 QSRDLPNL 497
                   
Sbjct: 115 SCSRGQGK 122

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 5e-20
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 8/229 (3%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 310
           + + LNL  N I        + L +LE L L    I   + G     GL +L  LEL D 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFDN 133

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALT 369
            +          L+ L  + L    I          + SL  L+L + +++      A  
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 429
            L  L +L+L    I D     L     L  LE+ G    +        LSSL  L +  
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           +  ++        GL  LV LN++++ ++S       PL+ L  L L  
Sbjct: 252 S-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 3/217 (1%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N I          L +L+ LQ+  + +    +    GL  L  L L    +T     +  
Sbjct: 85  NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG-FNEITDECLVHLKGLTNLESLNLD 284
            L  L  L L    +       F+++ SL  L+LG   ++        +GL NL+ LNL 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
            C I D  + NLT L  L+ LE+S             GL++L+ + +  + +S       
Sbjct: 205 MCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
            GL+SL  LNL    ++       T L  L  L L  
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 50/211 (23%), Positives = 77/211 (36%), Gaps = 15/211 (7%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            + L  L +L L    +    + + + L SL  L L    L+      F  +  L+ L L
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSC----GIGDEGLVNLTGLCNLKCLELSDTQVGSS 315
             N I          + +L  L+L        I +     L    NLK L L    +   
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKYLNLGMCNI--K 209

Query: 316 GLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
            + +L+ L  LE + +S   F  I  GS     GLSSLK L +   Q++     A   L 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
            L  L+L    ++          + L  L +
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 59/239 (24%), Positives = 91/239 (38%), Gaps = 24/239 (10%)

Query: 81  SNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
           SN + L+   N    I        R L +L  L   RN+ I    + AF GL +L  L+L
Sbjct: 75  SNTRYLNLMENNIQMIQAD---TFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL 130

Query: 139 ERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS-CSKVTDS 195
                T I  G    + L KL  L ++  N I        + + +L  L +    K+   
Sbjct: 131 FDNWLTVIPSGA--FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 196 GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
                +GL  L  LNL  C +    + +L+ L  L  L ++     +     F  + SLK
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 256 VLNLGFNEITDECLVH---LKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD 309
            L +  ++++    +      GL +L  LNL    +      L   T L  L  L L  
Sbjct: 246 KLWVMNSQVSL---IERNAFDGLASLVELNLAHNNLSSLPHDL--FTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 12/201 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           N + L L +  +          L +LE + L    I    +    GL+SL +L L    +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDL 419
           T     A   L+ L  L L    I    +       +L  L++     L        + L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 420 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
            +L  LNL    N+ D  +  ++ L GL  L +S +            L +L+ L + + 
Sbjct: 196 FNLKYLNLGMC-NIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN- 251

Query: 480 KVTANDIKRLQS---RDLPNL 497
               + +  ++      L +L
Sbjct: 252 ----SQVSLIERNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 7/176 (3%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
           +N   +NL    I          L  L+ L L    I    + A   L  L  L+LF   
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           +T   +        LR L +    +          + SL  L+L +   L   +     G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           L  L  LN+    I    + +L PL  L  L +       N    ++      L S
Sbjct: 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSG-----NHFPEIRPGSFHGLSS 243

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 52/290 (17%), Positives = 111/290 (38%), Gaps = 28/290 (9%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
            +   LD     +I++      + L NL +L    NN I+     AFA L+ L +L L  
Sbjct: 52  PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 109

Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI- 197
            +   +   +        L+ L +   N IT       +GL  +  +++  + +  SGI 
Sbjct: 110 NQLKELPEKM-----PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 198 -AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
               +G++KL+ + +    +T           SL  L+L+  +++         + +L  
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSD---TQ 311
           L L FN I+      L    +L  L+L++  +     GL +      ++ + L +   + 
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK---YIQVVYLHNNNISA 277

Query: 312 VGSSGLRH---LSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 356
           +GS+        +   +   ++L    +    ++      +    ++ L 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 30/295 (10%)

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N IT+        L NL +L +  +K++         L KL  L L    +         
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL---PEK 118

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH--LKGLTNLESLNL 283
              +L  L ++  +++      F+ +  + V+ LG N +    + +   +G+  L  + +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
               I     +      +L  L L   ++       L GL NL  + LSF  IS      
Sbjct: 179 ADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
           LA    L+ L+L+  ++       L     +  + L    I+            + S + 
Sbjct: 236 LANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNIS-----------AIGSNDF 283

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE--LISGLTGLVSLNVSNSR 456
           C  G            +S + ++L  N  +    ++      +    ++ + N +
Sbjct: 284 CPPGYNT-------KKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 59/302 (19%), Positives = 109/302 (36%), Gaps = 40/302 (13%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
             LL+L+   +T         L +L  L L   ++S      F+ +  L+ L L  N++ 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGL 323
           +   +  K    L+ L +    I         GL  +  +EL    + SSG+ +    G+
Sbjct: 114 E---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             L  I ++ T I+  ++ +     SL  L+LD  +IT    A+L  L  L  L L    
Sbjct: 171 KKLSYIRIADTNIT--TIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           I+                 +  G L         +   L  L+L+ N  L      L + 
Sbjct: 228 ISA----------------VDNGSL--------ANTPHLRELHLNNN-KLVKVPGGL-AD 261

Query: 444 LTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
              +  + + N+ I++          +     +   ++L S  V   +I+    R +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 498 VS 499
            +
Sbjct: 322 AA 323

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 54/256 (21%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 313 GSSGLRHLSG--LTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-- 365
               L+ L       L+ + +     T +         GL+ +  + L    +  +G+  
Sbjct: 112 ----LKELPEKMPKTLQELRVHENEITKVRKSVF---NGLNQMIVVELGTNPLKSSGIEN 164

Query: 366 AALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
            A   +  L+++ +    IT    G                                SLT
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGL-----------------------------PPSLT 195

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 483
            L+L  N  +T      + GL  L  L +S + I++     L    +LR L L +     
Sbjct: 196 ELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN----- 249

Query: 484 NDIKRLQS--RDLPNL 497
           N + ++     D   +
Sbjct: 250 NKLVKVPGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 384 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 439
           + +           K L+ L +    +T         L+ + ++ L  N  L    +E  
Sbjct: 112 LKELPEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENG 165

Query: 440 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
              G+  L  + ++++ IT+   GL       +L  L L+      N I ++ +  L  L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDG-----NKITKVDAASLKGL 215

Query: 498 VS 499
            +
Sbjct: 216 NN 217

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 22/132 (16%)

Query: 59  LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA 118
           + ++D + S +   G  H++    ++ +    C  I DG LE L  L NL          
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-------- 114

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRI-HGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
                        +++++++  C  +   G++ L     L+ L +     + + +    +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 178 GLTNLKSLQISC 189
             T+L SL++  
Sbjct: 162 FKTSLPSLELKL 173

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 74.5 bits (183), Expect = 9e-16
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSSGLRHLSGLTN----LESINL 331
            +++++     I   G  ++ GL  ++ + L     +    L  LS L N    +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 332 SF-TGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDL 379
                ++D  +  L    +LK L L D   + +         T L  L+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 127 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN----L 182
                 +  +D      +  G  +++GL  +E + +  C+ I D  ++ LS L N    +
Sbjct: 57  PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 183 KSLQIS-CSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDSLSALGSLFYLNLN 236
             ++I  C  VTD GI  L   + L  L L   P V        +   SL  L L 
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLS----SLKS 352
               ++ ++ +D+ + S G  H+ GL  +E I L     I DG L +L+ L     S+  
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE 118

Query: 353 LNLDA-RQITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEI 403
           + + +   +TD G+ AL     L +L L     + +          +L SLE+
Sbjct: 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 23/146 (15%)

Query: 167 CITDSDMKPLSGLTNLK--SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTAACLDS 223
              D +  P   L   K  ++  + S +   G  +++GLQ +  + L  C  +   CL+ 
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
           LS L +L    L   ++    C                  +TD+ ++ L    NL+ L L
Sbjct: 106 LSQLENLQKSML---EMEIISCGN----------------VTDKGIIALHHFRNLKYLFL 146

Query: 284 DSC-GIGDEGLVNLTGLCNLKCLELS 308
               G+ ++  +      +L  LEL 
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 22/131 (16%)

Query: 325 NLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLTGLTHLDLFGAR 383
            +++I+ + + I       + GL  ++ + L     I D  L  L+ L  L         
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK------- 114

Query: 384 ITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
                        ++  +EI   G +TD G+  +    +L  L LS    + +K   + +
Sbjct: 115 -------------SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 443 GLTGLVSLNVS 453
             T L SL + 
Sbjct: 162 FKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 397 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG----LVSLNV 452
            +++++     +   G  H++ L  +  + L +   + D  LE +S L      ++ + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 453 SN-SRITSAGLRHLKPLKNLRSLTLESCK-VTANDIKRLQSRD-LPNL 497
            +   +T  G+  L   +NL+ L L     V   +      +  LP+L
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.5 bits (212), Expect = 8e-18
 Identities = 63/433 (14%), Positives = 142/433 (32%), Gaps = 49/433 (11%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 136
           +   + L+              +       N       +   +       +  L +L  +
Sbjct: 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLK------WDNLKDLTDV 254

Query: 137 DLERC---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG--------LTNLKSL 185
           ++  C   T++   L  L    +++ +N+  CN     +                 ++ +
Sbjct: 255 EVYNCPNLTKLPTFLKALP---EMQLINV-ACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 186 QISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDG 244
            I  + +    +   L+ ++KL +L      +    L +  +   L  LNL   Q+++  
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIP 369

Query: 245 CEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSC---GIGDEGLVNLT--- 297
                    ++ L+   N++     +   K ++ + +++        +  +    L    
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 298 -GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRK----LAGLSS 349
               N+  + LS+ Q+        S  + L SINL     T I   SL+           
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 350 LKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITD-----SGAAYLRNFKNLRSLEI 403
           L S++L   ++T        T+L  L  +DL     +        ++ L+ F      + 
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
            G        + I    SLT L +  N ++     ++      +  L++ ++   S  L 
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI---TPNISVLDIKDNPNISIDLS 605

Query: 464 HLKPLKNLRSLTL 476
           ++ P        L
Sbjct: 606 YVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 60/438 (13%), Positives = 137/438 (31%), Gaps = 41/438 (9%)

Query: 75  IHLKDCSNLQSLD---FNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
           + L     +  L    F    ++ D     +  L+ L  L+   +     + +    G+ 
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPD----AIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC--NCITDSDMKPLSGLTNLKSLQISC 189
             +  + ++  R+H     +    + +  ++     N          S    LK  QI  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 190 SKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
                + +   +  L KL    +   P  A  +       +  Y    + +        +
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK-----W 245

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI--------GDEGLVNLTGLC 300
             +  L  + +       +    LK L  ++ +N+               + L +     
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 301 NLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
            ++ + +    + +  +   L  +  L  +   +  +  G L        L SLNL   Q
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQ 364

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKH--- 415
           IT+           + +L     ++         ++   + +++     +     K+   
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 416 ----IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP---- 467
                    +++ +NLS N  ++    EL S  + L S+N+  + +T      LK     
Sbjct: 425 LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 468 ---LKNLRSLTLESCKVT 482
                 L S+ L   K+T
Sbjct: 484 FKNTYLLTSIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 59/381 (15%), Positives = 116/381 (30%), Gaps = 55/381 (14%)

Query: 77  LKDCSNLQSLDFNFC-------IQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           LK    +Q ++           ++     L        +  +    NN  T     +   
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           +  L  L+     ++ G L      +KL SLN+   N IT+           +++L  + 
Sbjct: 329 MKKLGMLECLYN-QLEGKLPAFGSEIKLASLNL-AYNQITEIPANFCGFTEQVENLSFAH 386

Query: 190 SKVTD-SGIAYLKGLQKLTLLNLEGCPVT-------AACLDSLSALGSLFYLNLNRCQLS 241
           +K+     I   K +  ++ ++     +             +     ++  +NL+  Q+S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 242 DDGCEKFSKIGSLKVLNLGFNEITD-------ECLVHLKGLTNLESLNLDSCGIGDEGLV 294
               E FS    L  +NL  N +T+       +   + K    L S++L           
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-------- 498

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISD--GSLRKLAGLSS 349
            LT L +    +              + L  L  I+LS   F+       +   L G   
Sbjct: 499 KLTKLSD----DFR-----------ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
               +    +        +T    LT L +    I            N+  L+I      
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISVLDIKDNPNI 600

Query: 410 DAGVKHIKDLSSLTLLNLSQN 430
              + ++       +  L  +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYD 621

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 70/422 (16%), Positives = 140/422 (33%), Gaps = 26/422 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
                L+ +    IS+     +  LS L  L    +N I    +  F     L  LDL  
Sbjct: 21  QKTTILNISQN-YISELWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
             ++    ++    + L+ L++ +         K    ++ LK L +S + +  S +  +
Sbjct: 79  -NKLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 201 KGLQKLTL-LNLEGCPVTAACLDSLSALG--SLFYLNLNRCQLSDDGCEKFSKIGSLKVL 257
             L    + L L          + L      SL  +     +           + +L++ 
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 258 NLGFNEITDECLVHLKGLTNLE------SLNLDSCGIGDEGLV---NLTGLCNLKCLELS 308
           N+      ++C   L  L  L+      +L L++        +    L     +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 363
           + ++           +      LS   +                S++   N         
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 421
            +   + ++   HLD     +TD+      +   L +L +    L       +    + S
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
           L  L++SQN    D+     S    L+SLN+S++ +T    R L     ++ L L S K+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 482 TA 483
            +
Sbjct: 434 KS 435

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 54/366 (14%), Positives = 121/366 (33%), Gaps = 24/366 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT-SLSFRR 115
           S L  + LS + +  S ++ +   +  + L             E L+  +  +  + F  
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N         +   + NL   +++     +     L  L KL++        + + +   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 176 LSGLT-------------NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD 222
            S +              ++ ++++               L+ L++  +           
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
                 ++   N              SKI     L+   N +TD    +   LT LE+L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 283 LDSCGIG--DEGLVNLTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLSFTGISDG 339
           L    +    +     T + +L+ L++S   V     +   S   +L S+N+S   ++D 
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 340 SLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN 397
             R L     +K L+L + +I      +  L +L     L++   ++            +
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQ---ELNVASNQLKSVPDGIFDRLTS 469

Query: 398 LRSLEI 403
           L+ + +
Sbjct: 470 LQKIWL 475

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 47/312 (15%), Positives = 104/312 (33%), Gaps = 16/312 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
               + +F+F + +S   + +L  LSN+  +      +     +        L  L L  
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 141 CT---RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSG----LTNLKSLQISCSKVT 193
                     ++ L     +   +I         D +        L  L   Q+      
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 194 DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
                  +    + + N          +   S +    +L+ +   L+D   E    +  
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 254 LKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDT 310
           L+ L L  N++    +       + +L+ L++    +  DE   + +   +L  L +S  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 311 QVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALT 369
            +  +  R L     ++ ++L    I   S+ +++  L +L+ LN+ + Q+         
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 370 SLTGLTHLDLFG 381
            LT L  + L  
Sbjct: 466 RLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 43/271 (15%), Positives = 87/271 (32%), Gaps = 6/271 (2%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
               LN+++  +S+        +  L++L +  N I    +   K    LE L+L    +
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGL 347
                ++     NLK L+LS     +  +      ++ L+ + LS T +   S+  +A L
Sbjct: 82  VK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           +  K L +      +        L       L     T+    ++ +        +    
Sbjct: 139 NISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 467
           +      +        L  L  N  L++ TL  I          +     T+     +  
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 468 LKNLRSLTLESCKVTANDIKRLQSRDLPNLV 498
           +K    L       +   +K L    + + V
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLN 161
            +S    L F  NN +T    +    L  L  L L+      +         +  L+ L+
Sbjct: 322 KISPFLHLDFS-NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 162 IKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
           I   +   D      S   +L SL +S + +TD    +     ++ +L+L         +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--TIFRCLPPRIKVLDLHSNK-----I 433

Query: 222 DSLSA----LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
            S+      L +L  LN+   QL       F ++ SL+ + L  N
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 7/179 (3%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
                +N+S   IS+     +  LS L+ L +   +I    ++       L +LDL   +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLELIS 442
           +            NL+ L++         + K   ++S L  L LS   +L   ++  I+
Sbjct: 81  LV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIA 136

Query: 443 GLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 501
            L     L V             + L++  + +L     T  +   +    +  + +  
Sbjct: 137 HLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 3e-17
 Identities = 99/437 (22%), Positives = 161/437 (36%), Gaps = 44/437 (10%)

Query: 57  SSLLSVDLSGSDVTDS--GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFR 114
           +SL S+DLS + ++     L  L  CS L+ L+ +       G +     L++L  L   
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 115 RNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
            N+          +G                 G V   G  +L+ L I     I+     
Sbjct: 160 ANS---------ISG-------------ANVVGWVLSDGCGELKHLAISGNK-ISGD--V 194

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +S   NL+ L +S +  +   I +L     L  L++ G  ++     ++S    L  LN
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGL 293
           ++  Q    G      + SL+ L+L  N+ T E    L G    L  L+L          
Sbjct: 254 ISSNQFV--GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 294 VNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDG---SLRKLAGLSS 349
                   L+ L LS     G   +  L  +  L+ ++LSF   S     SL  L   +S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SAS 369

Query: 350 LKSLNLDARQITDTGLAAL--TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
           L +L+L +   +   L  L       L  L L     T      L N   L SL +    
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL--RHL 465
           L+      +  LS L  L L  N  L  +  + +  +  L +L +  + +T  G     L
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLT--GEIPSGL 486

Query: 466 KPLKNLRSLTLESCKVT 482
               NL  ++L + ++T
Sbjct: 487 SNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 9e-16
 Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 17/287 (5%)

Query: 204 QKLTLLNLEGCPVTAAC---LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
            K+T ++L   P+         SL +L  L  L L+   ++      F    SL  L+L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLS 108

Query: 261 FNEITDE--CLVHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSDTQ---VGS 314
            N ++     L  L   + L+ LN+ S  +   G V     L +L+ L+LS         
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 374
            G     G   L+ + +S   IS G +  ++   +L+ L++ +   +   +  L   + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS-GDV-DVSRCVNLEFLDVSSNNFSTG-IPFLGDCSAL 225

Query: 375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 434
            HLD+ G +++   +  +     L+ L I        G      L SL  L+L++N   T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAEN-KFT 282

Query: 435 DK-TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 480
            +    L      L  L++S +    A          L SL L S  
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 6e-12
 Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 13/236 (5%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S+ + +   N         L  LT LESL L +  I    +       +L  L+LS   +
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNSL 112

Query: 313 GSS--GLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDT---GLA 366
                 L  L   + L+ +N+S   +   G +     L+SL+ L+L A  I+     G  
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
                  L HL + G +I  SG   +    NL  L++     +  G+  + D S+L  L+
Sbjct: 173 LSDGCGELKHLAISGNKI--SGDVDVSRCVNLEFLDVSSNNFST-GIPFLGDCSALQHLD 229

Query: 427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
           +S N  L+      IS  T L  LN+S+++    G     PLK+L+ L+L   K T
Sbjct: 230 ISGN-KLSGDFSRAISTCTELKLLNISSNQFV--GPIPPLPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 80/428 (18%), Positives = 143/428 (33%), Gaps = 68/428 (15%)

Query: 52  IASQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGL--EHLRGLSN 107
           ++    +L  +DLSG+     G +      CS L+SL  +     S G L  + L  +  
Sbjct: 289 LSGACDTLTGLDLSGNHF--YGAVPPFFGSCSLLESLALSSN-NFS-GELPMDTLLKMRG 344

Query: 108 LTSLSFRRNNAITAQGMKAFAGLI---------NLVKLDLERCTRIHGGL---VNLKGLM 155
           L  L    N          F+G +         +L+ LDL       G +   +      
Sbjct: 345 LKVLDLSFNE---------FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKN 394

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 215
            L+ L ++  N  T      LS  + L SL +S + ++ +  + L  L KL  L L    
Sbjct: 395 TLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 216 VTAACLDSLSALGSLFYLNLNRCQLSDDGC--EKFSKIGSLKVLNLGFNEITDECLVHLK 273
           +       L  + +L  L L+   L+  G      S   +L  ++L  N +T E    + 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
            L NL  L L +         + +G        +            L    +L  ++L+ 
Sbjct: 512 RLENLAILKLSNN--------SFSG-------NIPAE---------LGDCRSLIWLDLNT 547

Query: 334 TGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA--A 390
              + G++   +   S   + N     I       + +          G  +   G    
Sbjct: 548 NLFN-GTIPAAMFKQSGKIAAN----FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
            L          I              +  S+  L++S N  L+    + I  +  L  L
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFIL 661

Query: 451 NVSNSRIT 458
           N+ ++ I+
Sbjct: 662 NLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 57/291 (19%), Positives = 102/291 (35%), Gaps = 51/291 (17%)

Query: 54  SQGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL 111
               +L ++ L  +D+T  G I   L +C+NL  +  +   +++    + +  L NL  L
Sbjct: 463 MYVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAIL 519

Query: 112 SFRRNN---AITAQGMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKW 164
               N+    I A+         +L+ LDL      +G     +    G +         
Sbjct: 520 KLSNNSFSGNIPAE----LGDCRSLIWLDLNT-NLFNGTIPAAMFKQSGKIAA------- 567

Query: 165 CNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI--AYLKGLQKLTLLNLEGCPVTAACLD 222
            N I       +      K    + + +   GI    L  L      N+           
Sbjct: 568 -NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN 282
           +    GS+ +L+++   LS    ++   +  L +LNLG N+I+      +  L  L  L+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
           L S          L G            ++  +    +S LT L  I+LS 
Sbjct: 687 L-SSN-------KLDG------------RIPQA----MSALTMLTEIDLSN 713

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 11/233 (4%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSC 286
           S   L L   +L       F K+  L  L+L  N ++    C     G T+L+ L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 287 GIGD--EGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRK 343
           G+       + L     L+ L+   + +   S       L NL  +++S T         
Sbjct: 89  GVITMSSNFLGLE---QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 344 LAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 402
             GLSSL+ L +       +      T L  LT LDL   ++         +  +L+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSN 454
           +             K L+SL +L+ S N ++     + +    + L  LN++ 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 18/236 (7%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGSLKVLNLGFNE 263
            T L LE   + +        L  L  L+L+   LS  GC         SLK L+L FN 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 264 ITDECL-VHLKGLTNLESLNLDSCGIG---DEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
           +    +  +  GL  LE L+     +    +  +     L NL  L++S T    +    
Sbjct: 90  VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGI 145

Query: 320 LSGLTNLESINLSF----TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 375
            +GL++LE + ++                  L +L  L+L   Q+      A  SL+ L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQN 430
            L++             +   +L+ L+     +  +  + ++   SSL  LNL+QN
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 36/258 (13%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
           S+ T L    N  + +     F  L  L KL L                           
Sbjct: 28  SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSS------------------------- 61

Query: 166 NCITDSDMKP--LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD 222
           N ++          G T+LK L +S + V     +   GL++L  L+ +   +   +   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH-LKGLTNLESL 281
              +L +L YL+++           F+ + SL+VL +  N   +  L      L NL  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF---TGISD 338
           +L  C +          L +L+ L +S     S        L +L+ ++ S         
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 339 GSLRKLAGLSSLKSLNLD 356
             L+     SSL  LNL 
Sbjct: 241 QELQHF--PSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 9/202 (4%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLDAR 358
           +   LEL   ++ S        LT L  ++LS  G+S       +  G +SLK L+L   
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
            +     +    L  L HLD   + +   S  +   + +NL  L+I       A      
Sbjct: 89  GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
            LSSL +L ++ N    +   ++ + L  L  L++S  ++          L +L+ L + 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 478 SCKVTANDIKRLQSRDLPNLVS 499
                 N+   L +     L S
Sbjct: 208 H-----NNFFSLDTFPYKCLNS 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 13/213 (6%)

Query: 57  SSLLSVDLSGSDVTDSGLIH--LKDCSNLQSLD--FNFCIQISDGGLEHLRGLSNLTSLS 112
           + L  + LS + ++  G         ++L+ LD  FN  I +S        GL  L  L 
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQLEHLD 107

Query: 113 FRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITD 170
           F+ +N         F  L NL+ LD+          G+    GL  LE L +   +   +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQEN 165

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
                 + L NL  L +S  ++          L  L +LN+      +        L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 231 FYLNLNRCQLSDDGCEKFSKI-GSLKVLNLGFN 262
             L+ +   +     ++      SL  LNL  N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 12/180 (6%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--ALTSLTGLTHLDLFG 381
           ++   + L    +          L+ L  L+L +  ++  G    +    T L +LDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 382 ARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTDKTL 438
             +    +      + L  L+     L    +  V     L +L  L++S   +      
Sbjct: 88  NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT-HTRVAFN 143

Query: 439 ELISGLTGLVSLNVS-NSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
            + +GL+ L  L ++ NS   +        L+NL  L L  C++    +       L +L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSL 201

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 8e-17
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 37/298 (12%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
            TLL+L+   ++    D    L  L+ L L   ++S    + FS +  L+ L +  N + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +   +     ++L  L +    I        +GL N+ C+E+                  
Sbjct: 116 E---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------------- 158

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                L  +G   G+   L     L  L +   ++T        +L     L L   +I 
Sbjct: 159 -----LENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQ 206

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 445
                 L  +  L  L +    +       +  L +L  L+L  N  L+     L   L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGL-PDLK 264

Query: 446 GLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
            L  + +  + IT         +           ++L +  V   +++    R + + 
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 29/290 (10%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE- 139
            +   LD      IS+   +  +GL +L +L    NN I+    KAF+ L  L KL +  
Sbjct: 54  PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISK 111

Query: 140 -RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
                I   L        L  L I   N I        SGL N+  +++  + + +SG  
Sbjct: 112 NHLVEIPPNL-----PSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 199 Y--LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
                GL KL  L +    +T    D    L  L +L+ N+ Q  +       +   L  
Sbjct: 166 PGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELED--LLRYSKLYR 221

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGS 314
           L LG N+I       L  L  L  L+LD+  +     GL +L     L+ + L    +  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK---LLQVVYLHTNNITK 278

Query: 315 ------SGLRHLSGLTNLESINLSFTGISDGSLRKLA--GLSSLKSLNLD 356
                   +           I+L    +    ++      ++   ++   
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 17/266 (6%)

Query: 200 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
            KGLQ L  L L    ++     + S L  L  L +++  L +      S   SL  L +
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRI 130

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLR 318
             N I         GL N+  + +    + + G          L  L +S+ ++      
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 378
               L  L   +     I    L      S L  L L   QI      +L+ L  L  L 
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 379 LFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGVKHIKDLSSLTLLNLSQNCN 432
           L   +++    A L + K L+ + +    +T         V      +    ++L  N  
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-P 305

Query: 433 LTDKTLE--LISGLTGLVSLNVSNSR 456
           +    ++      +T  +++   N +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 23/182 (12%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    IS+       GL  L +L L   +I+     A + L  L  L +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 384 ITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE-- 439
           + +            +L  L I    +          L ++  + +  N  L +   E  
Sbjct: 114 LVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPG 167

Query: 440 LISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
              GL  L  L +S +++T     L      + L  L L+      N I+ ++  DL   
Sbjct: 168 AFDGLK-LNYLRISEAKLTGIPKDL-----PETLNELHLDH-----NKIQAIELEDLLRY 216

Query: 498 VS 499
             
Sbjct: 217 SK 218

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 28/279 (10%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT 265
           +  L+L    +T      L    +L  L L    ++    + FS +GSL+ L+L +N ++
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 325
           +      K L++L  LNL                   K L  +      S L  L  L  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN--------------PYKTLGETSL---FSHLTKLQILRV 156

Query: 326 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 385
                 +FT I        AGL+ L+ L +DA  +      +L S+  ++HL L   +  
Sbjct: 157 GN--MDTFTKIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS--QNCNLTDKTL----E 439
                ++    ++  LE+    L       +    + +L+     +N  +TD++L    +
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 440 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           L++ ++GL+ L  S +++ S        L +L+ + L +
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG--DEGLVNLTGLCNLKCLELSDT 310
           ++K L+L  N IT      L+   NL++L L S GI   +E     + L +L+ L+LS  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDLSYN 110

Query: 311 QVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLA 366
            + +        L++L  +NL    +  + + SL   + L+ L+ L +      T     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRK 168

Query: 367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 426
               LT L  L++  + +       L++ +N+  L +            +   SS+  L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 427 LSQN-------CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 479
           L            L+      +       ++ +++  +    ++ L  +  L  L     
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRN 287

Query: 480 KVTA 483
           ++ +
Sbjct: 288 QLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 54/283 (19%), Positives = 106/283 (37%), Gaps = 32/283 (11%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
             ++SLD +   +I+      L+   NL +L    +N I      +F+ L +L  LDL  
Sbjct: 52  EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 141 C--TRIHGGLVNLKGLMKLESLNIKWCNCITD-SDMKPLSGLTNLKSLQI-SCSKVTDSG 196
              + +       K L  L  LN+   N      +    S LT L+ L++ +    T   
Sbjct: 110 NYLSNLSSSW--FKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
                GL  L  L ++   + +    SL ++ ++ +L L+  Q             S++ 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           L L   ++      H   L+  E+              +L      + ++++D  +    
Sbjct: 227 LELRDTDLDT---FHFSELSTGETN-------------SLIKKFTFRNVKITDESL-FQV 269

Query: 317 LRHLSGLTNLESINLS---FTGISDGSLRKLAGLSSLKSLNLD 356
           ++ L+ ++ L  +  S      + DG       L+SL+ + L 
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGI---FDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 56/264 (21%), Positives = 97/264 (36%), Gaps = 17/264 (6%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
             +KSL +S +++T    + L+    L  L L    +     DS S+LGSL +L+L+   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCG----IGDEGLV 294
           LS+     F  + SL  LNL  N         L   LT L+ L + +      I  +   
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS--S 349
            LT    L+ LE+  + + S   + L  + N+  + L       + +  +   + +    
Sbjct: 172 GLT---FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 350 LKSLNLDARQIT---DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 406
           L+  +LD    +        +L       ++ +    +       L     L  LE    
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 407 GLTDAGVKHIKDLSSLTLLNLSQN 430
            L          L+SL  + L  N
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 12/203 (5%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
            +K L+LS+ ++       L    NL+++ L+  GI+       + L SL+ L+L    +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI----CGGGLTDAGVKHI 416
           ++   +    L+ LT L+L G      G   L  F +L  L+I         T    K  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
             L+ L  L +  + +L     + +  +  +  L +   +        +    ++  L L
Sbjct: 171 AGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 477 ESCKVTANDIKRLQSRDLPNLVS 499
                   D+      +L    +
Sbjct: 230 RD-----TDLDTFHFSELSTGET 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 24/226 (10%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           + + + L  N I+       +   NL  L L S  +        TGL  L+ L+LSD   
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 372
                            N     +   +     GL  L +L+LD   + + G      L 
Sbjct: 90  -----------------NAQLRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L +L L    +        R+  NL  L + G  ++    +  + L SL  L L QN  
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-R 188

Query: 433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           +          L  L++L +  + +++     L PL+ L+ L L  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 50/229 (21%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
           +    +    N  I+     +F    NL  L L      RI        GL  LE L+  
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLD-- 86

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                       LS    L+S+  +             GL +L  L+L+ C +       
Sbjct: 87  ------------LSDNAQLRSVDPAT----------FHGLGRLHTLHLDRCGLQELGPGL 124

Query: 224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
              L +L YL L    L     + F  +G+L  L L  N I+       +GL +L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 332
               +          L  L  L L    + +     L+ L  L+ + L+
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 9/207 (4%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 288
           +   + L+  ++S      F    +L +L L  N +         GL  LE L+L     
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD--- 89

Query: 289 GDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 343
            +  L ++      GL  L  L L    +   G     GL  L+ + L    +       
Sbjct: 90  -NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 403
              L +L  L L   +I+     A   L  L  L L   R+        R+   L +L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQN 430
               L+    + +  L +L  L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 7/201 (3%)

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-R 358
              + + L   ++            NL  + L    ++        GL+ L+ L+L    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 359 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
           Q+     A    L  L  L L    + + G    R    L+ L +    L        +D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           L +LT L L  N  ++        GL  L  L +  +R+        + L  L +L L +
Sbjct: 152 LGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 479 CKVTANDIKRLQSRDLPNLVS 499
                N++  L +  L  L +
Sbjct: 211 -----NNLSALPTEALAPLRA 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 6/208 (2%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++   + L G+ ++       + C NL  L  +    ++        GL+ L  L    N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90

Query: 117 NAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK 174
             + +     F GL  L  L L+RC    +  GL   +GL  L+ L ++  N +      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQD-NALQALPDD 147

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
               L NL  L +  ++++       +GL  L  L L    V      +   LG L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
           L    LS    E  + + +L+ L L  N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 151 LKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGI-----AYLKGLQK 205
           L  +  L +L IK  N ++           NLKSL+I    + DS +     + L  L+K
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 206 LTL---LNLEGCPVTAACLDSL---SALGSLFYLNLNRCQLSDDGCEKFSK---IGSLKV 256
           L L   +   G          L       +L +L +   +  +   E F +   +  L+ 
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 257 LNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 311
           +++    +TDE     L H+  + +L+ +N+    + DE    L     +K +++SD+Q
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTG--LCNLKCLEL---SDTQVGSSGLRHLSGL------ 323
             NL+SL + S G+ D  + ++ G  L NL+ L L    +       +     L      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 324 TNLESINLSFTGISDGSLRKLAG---LSSLKSLNLDARQITDTGLAAL----TSLTGLTH 376
            NL+ + +      +  +        L  L+++++ A  +TD G   L      +  L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 377 LDLFGARITDSGAAYLRN 394
           +++    ++D     L+ 
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.2 bits (155), Expect = 2e-11
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 29/190 (15%)

Query: 272 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL--SGLTNLESI 329
           L  +  L +L +        G        NLK LE+    +  S +  +  S L NLE +
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 389
            L       G    +     L                +      L  L +  A   +   
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPL---------------FSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 390 AYL---RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNLTDKTLE-LI 441
                      L +++I  G LTD G + +      +  L  +N+  N  L+D+  + L 
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328

Query: 442 SGLTGLVSLN 451
             L   + ++
Sbjct: 329 KSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 41/197 (20%)

Query: 318 RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS--LTGL 374
             L  +  L ++ +  T  +S G         +LKSL + +  + D+ +  +    L  L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 375 THLDLFGAR---ITDSGAAYL------RNFKNLRSLEICGGGLTDAGVKHI---KDLSSL 422
             L L+        D              F NL+ L I      +  V+       L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 482
             +++S    LTD+   L+                    L H+  +K+L+ + ++   ++
Sbjct: 282 ETMDISAG-VLTDEGARLL--------------------LDHVDKIKHLKFINMKYNYLS 320

Query: 483 ANDIKRLQSRDLPNLVS 499
               K LQ   LP  + 
Sbjct: 321 DEMKKELQKS-LPMKID 336

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 79/475 (16%), Positives = 155/475 (32%), Gaps = 87/475 (18%)

Query: 3   PRDISQQIFNELV-YSRCLTEVSLEAFRDCALQDLCLGQYPGVNDKWMDVIASQGSSLLS 61
           PR++S     E + +S  LTE+ +EA    +  +                  +      +
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYN---------------AWSEWERN 49

Query: 62  VDLSGSDVTDSGLIHLKDC--SNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNA 118
                 +  +  +  L+DC       L+      +++ GL  L     +L SL    N+ 
Sbjct: 50  APPGNGEQREMAVSRLRDCLDRQAHELE------LNNLGLSSLPELPPHLESLVASCNSL 103

Query: 119 ITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM-KLESLNIKWCNCITDSDMKPLS 177
                 +    L +L+  +          L  L  L   LE L +   N +       L 
Sbjct: 104 TELP--ELPQSLKSLLVDNNN--------LKALSDLPPLLEYLGVS-NNQLEKLP--ELQ 150

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             + LK + +  + +             L  +      +    L  L  L  L  +  + 
Sbjct: 151 NSSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADN 204

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 297
             L     +      SL+ +  G N + +  L  L+ L  L ++  D+  +  + L +L 
Sbjct: 205 NSLK----KLPDLPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLL--KTLPDL- 255

Query: 298 GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKL----------- 344
              +L+ L + D  + +        LT L+     F+G+S+   +L  L           
Sbjct: 256 -PPSLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
               SL+ LN+   ++ +           L  L      + +         +NL+ L + 
Sbjct: 314 DLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVE 365

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
              L         D+   ++ +L  N +L     E+      L  L+V  + +  
Sbjct: 366 YNPLR-----EFPDIPE-SVEDLRMNSHLA----EVPELPQNLKQLHVETNPLRE 410

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 74/434 (17%), Positives = 145/434 (33%), Gaps = 83/434 (19%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 158
            E LR  SNLT +                  + +  +                    ++ 
Sbjct: 14  QEPLRHSSNLTEMP------------VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 159 SLNIKWCNCIT----DSDMKPLSGL----TNLKSLQISCSKVTDSGI-AYLKGLQKLTLL 209
              ++ C        + +   LS L     +L+SL  SC+ +T+  +    + L+ L + 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE--LPELPQSLKSLLVD 119

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 269
           N     ++            L YL ++  QL      +      LK++++  N +     
Sbjct: 120 NNNLKALS-------DLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKL-- 168

Query: 270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLES 328
                  +LE +   +  +  E L  L  L  L  +   +       L+ L     +LES
Sbjct: 169 --PDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNS-----LKKLPDLPLSLES 219

Query: 329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG 388
           I      +    L +L  L  L ++  D   +             L  L++    +TD  
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTD-- 271

Query: 389 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGL 447
                  ++L  L+     +++     + +L  +L  LN S N  +      L      L
Sbjct: 272 --LPELPQSLTFLD-----VSENIFSGLSELPPNLYYLNASSN-EIR----SLCDLPPSL 319

Query: 448 VSLNVSNSRITS--AGLRHLKPL--------------KNLRSLTLESCKVTA--NDIKRL 489
             LNVSN+++    A    L+ L              +NL+ L +E   +    +  + +
Sbjct: 320 EELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379

Query: 490 QSRDLPNLVSFRPE 503
           +   + + ++  PE
Sbjct: 380 EDLRMNSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 52/351 (14%), Positives = 117/351 (33%), Gaps = 62/351 (17%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
             L  + +S + +    L  L++ S L+ +D      + +  L+ L     +L  ++   
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIID------VDNNSLKKLPDLPPSLEFIAAG- 181

Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLK----------------GLMKL 157
           NN +    +     L  L  +  +     ++    ++L+                 L  L
Sbjct: 182 NNQLEE--LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 239

Query: 158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 217
            ++     N +            +L++L +  + +T       + L  L +       ++
Sbjct: 240 TTIYAD-NNLLKTLP----DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLT 276
                      +L+YLN +  ++            SL+ LN+  N++       L     
Sbjct: 294 -------ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-----ELPALPP 337

Query: 277 NLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI----- 329
            LE L      + +  E   NL  L +++   L +       +  L   ++L  +     
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQL-HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 330 NLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           NL    +    LR+      S++ L +++ ++ D    A  +   L     
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 74/422 (17%), Positives = 146/422 (34%), Gaps = 28/422 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
              ++L  +    IS+  +  +  LS L  L    N  I +     F    +L  LD+  
Sbjct: 52  PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS- 108

Query: 141 CTRIHGGLVNL--KGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA 198
               H  L N+    +  L  L++ + +       K    LT L  L +S +K     + 
Sbjct: 109 ----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 199 YLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLF-YLNLNRCQL-SDDGCEKFSKIGSLK 255
            +  L    + L+L    +     +SL    +   +L  +   L S       + +G L+
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 256 VLNLGFNEITDECL----VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE---LS 308
           + N+  N+   + L      L     L ++ L       +  V L      + +E   + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-----GLSSLKSLNLDARQITDT 363
           +  +     R     +     +L    + +              + +    L        
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT--DAGVKHIKDLSS 421
            +    S +  T L+      TDS        K L++L +   GL          K++SS
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 481
           L  L++S N   +       +    ++ LN+S++ +T +  R L P   ++ L L + ++
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRI 462

Query: 482 TA 483
            +
Sbjct: 463 MS 464

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 54/367 (14%), Positives = 116/367 (31%), Gaps = 22/367 (5%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
           + L  L      +     L  +  L     L    +  I     ++   + N   L L  
Sbjct: 146 TKLTFLGL-SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ-IPNTTVLHLVF 203

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT------NLKSLQISCSKVTD 194
                  +     +  L  L +       ++  + ++ L+       L ++ +   + T 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 195 SGI------AYLKGLQKLTLLN--LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE 246
                     + + ++ L + N  +           S +AL SL   ++           
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 306
            +S    + +  L  ++     +V     ++   LN       D      + L  L+ L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 307 LSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLRKL-AGLSSLKSLNLDARQITDT 363
           L    + +          +++LE++++S   ++  +  +  A   S+  LNL +  +T +
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
               L     +  LDL   RI           + L+ L +    L          L+SL 
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIMSIPKDVTH-LQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 424 LLNLSQN 430
            + L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 12/155 (7%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICG 405
              K+L+L    I++  +  ++ L+ L  L L   RI   D        F   + LE   
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-----FLFNQDLEYL- 105

Query: 406 GGLTDAGVKHI--KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
             ++   +++I    ++SL  L+LS N        +    LT L  L +S ++     L 
Sbjct: 106 -DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 464 HLKPLK-NLRSLTLESCKVTANDIKRLQSRDLPNL 497
            +  L  +   L L S  +   + + LQ  +   L
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 69/351 (19%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
                 L  +  T +      L    +  + +    +          +   N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRTG 65

Query: 190 SKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +      +           L L   P+     D    L  L ++ ++   L +   + 
Sbjct: 66  RALKATADLLEDAT-QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMEL-PDT 122

Query: 248 FSKIGSLKVLNLGFNEIT---DECLVHLKGLTNLESLNLDSC--------GIGD-EGLVN 295
             +   L+ L L  N +          +  L  L  L++ +C         +   +    
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 296 LTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTGISDGSL-RKLAGLSSL 350
             GL NL+ L L  T      +R L    + L NL+S+ +  + +S  +L   +  L  L
Sbjct: 179 HQGLVNLQSLRLEWTG-----IRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKL 231

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL--EICGGGL 408
           + L+L                  L  L L             ++  NL +L  +I     
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLIL-------------KDCSNLLTLPLDIH---- 274

Query: 409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRIT 458
                     L+ L  L+L    NL+   L  LI+ L     + V      
Sbjct: 275 ---------RLTQLEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 53/299 (17%), Positives = 98/299 (32%), Gaps = 42/299 (14%)

Query: 203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
                 L  +G        D LS     +  + NR   +     + +   + ++      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTGR 66

Query: 263 EITD--ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLR 318
            +    + L          +L L S  +    +    L+   +L+ + +         L 
Sbjct: 67  ALKATADLLEDAT-QPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG-----LM 117

Query: 319 HL----SGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNL-DARQITD--------TG 364
            L         LE++ L+   +   +L   +A L+ L+ L++    ++T+          
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
                 L  L  L L    I    A+ + N +NL+SL+I    L+  G   I  L  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE 233

Query: 425 LNLSQNCNLTDKTLELISGLTGLVSLNVSN-SRITS--AGLRHLKPLKNLRSLTLESCK 480
           L+L   C        +  G   L  L + + S + +    +     L  L  L L  C 
Sbjct: 234 LDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR---LTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 41/243 (16%), Positives = 76/243 (31%), Gaps = 41/243 (16%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 329
           H    +  E+L           L      L   +    +D           +   N +  
Sbjct: 7   HHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIE 61

Query: 330 NLSFTGISD--GSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARIT- 385
             +   +      L          +L L +  +           L+ L H+ +  A +  
Sbjct: 62  TRTGRALKATADLLEDAT-QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLME 118

Query: 386 --DSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIKDLSSLTLLNLSQNCNLTD----- 435
             D+    ++ F  L +L +    L     +    I  L+ L  L++     LT+     
Sbjct: 119 LPDT----MQQFAGLETLTLARNPLRALPAS----IASLNRLRELSIRACPELTELPEPL 170

Query: 436 ---KTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESCKVTA--NDIKR 488
                     GL  L SL +  + I S  A + +   L+NL+SL + +  ++A    I  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN---LQNLKSLKIRNSPLSALGPAIHH 227

Query: 489 LQS 491
           L  
Sbjct: 228 LPK 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 50/275 (18%)

Query: 218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN 277
            +             L            +  S+       +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 278 LESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINL 331
            +        +    + L + T       LEL         L         L++L+ + +
Sbjct: 58  PQIETRTGRALKATADLLEDAT-QPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTI 111

Query: 332 SFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGA 389
              G+    L   +   + L++L L    +    L A++ SL  L  L            
Sbjct: 112 DAAGLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELS----------- 156

Query: 390 AYLRNFKNLRSL--EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTG 446
             +R    L  L   +     +       + L +L  L L     +   +L   I+ L  
Sbjct: 157 --IRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEWT-GIR--SLPASIANLQN 207

Query: 447 LVSLNVSNSRITS--AGLRHLKPLKNLRSLTLESC 479
           L SL + NS +++    + H   L  L  L L  C
Sbjct: 208 LKSLKIRNSPLSALGPAIHH---LPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 49/222 (22%), Positives = 81/222 (36%), Gaps = 46/222 (20%)

Query: 77  LKDCSNLQSLDFNFCIQISDGGLEHL----RGLSNLTSLSFRRNN--AITAQGMKAFAGL 130
               S+LQ +  +        GL  L    +  + L +L+  RN   A+ A    + A L
Sbjct: 100 AFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNPLRALPA----SIASL 149

Query: 131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCS 190
             L +L +  C              +L  L     +           GL NL+SL++  +
Sbjct: 150 NRLRELSIRACP-------------ELTELPEPLAST---DASGEHQGLVNLQSLRLEWT 193

Query: 191 KVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +    + IA L+    L  L +   P++ A   ++  L  L  L+L  C    +    F
Sbjct: 194 GIRSLPASIANLQ---NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 249 SKIGSLKVLNL-GFNEIT---DECLVHLKGLTNLESLNLDSC 286
                LK L L   + +     +    +  LT LE L+L  C
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGC 287

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 17/212 (8%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
           S K L+L FN +             L+ L+L  C I          L +L  L L+   +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSL 371
            S  L   SGL++L+ +    T ++      +  L +LK LN+    I    L    ++L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 372 TGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS-------SL 422
           T L HLDL   +I             + L  + +    L D  +  +  +         L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTD-----LRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRL 202

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             L L  N  L      +   LT L  + +  
Sbjct: 203 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 16/190 (8%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              +L +L+L  C +      +  +L  L  L L    +       FS + SL+ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 262 NEITDECLVHLKGLTNLESLNLDS---CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 318
             +       +  L  L+ LN+                + L NL+ L+LS  ++ S    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCT 167

Query: 319 HLSGLTNLESINLS-------FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSL 371
            L  L  +  +NLS          I  G+ +++     LK L LD  Q+          L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRL 223

Query: 372 TGLTHLDLFG 381
           T L  + L  
Sbjct: 224 TSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCTR 143
           L FN    +   G         L  L   R   I      A+  L +L  L L       
Sbjct: 35  LSFN---PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIA-YLKG 202
           +  G     GL  L+ L     N +   +  P+  L  LK L ++ + +    +  Y   
Sbjct: 91  LALGA--FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 203 LQKLTLLNLEGCPVT---AACLDSLSALGSLFY-LNLNRCQLSDDGCEKFSKIGSLKVLN 258
           L  L  L+L    +       L  L  +  L   L+L+   ++      F +I  LK L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206

Query: 259 LGFNEITDECLVHLKGLTNLESLNLDS 285
           L  N++          LT+L+ + L +
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 407
            S K+L+L    +   G  +  S   L  LDL    I        ++  +L +L + G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLK 466
           +    +     LSSL  L      NL       I  L  L  LNV+++ I S     +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV-ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 467 PLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
            L NL  L L S     N I+ +   DL  L  
Sbjct: 147 NLTNLEHLDLSS-----NKIQSIYCTDLRVLHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQI 360
           + K L+LS   +   G         L+ ++LS   I          LS L +L L    I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 361 TDTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLT---DAGVKH 415
               L A + L+ L  L      +   ++      + K L+ L +    +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-- 144

Query: 416 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGL----VSLNVSNSRITSAGLRHLKPLKNL 471
             +L++L  L+LS N  +       +  L  +    +SL++S + +        K +  L
Sbjct: 145 FSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 472 RSLTLESCKVTANDIKRLQSRDLPNLVS 499
           + L L++     N +K +       L S
Sbjct: 203 KELALDT-----NQLKSVPDGIFDRLTS 225

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 4e-11
 Identities = 58/293 (19%), Positives = 95/293 (32%), Gaps = 66/293 (22%)

Query: 203 LQKLTLLNLEGCPVTAACLDSL--SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 260
                +LN+         L +L       +  L +    L+            L+ L + 
Sbjct: 39  NNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLTSLPAL----PPELRTLEVS 89

Query: 261 FNEITDECL-VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRH 319
            N++T   L V   GL  L   +     +             L  L +   Q     L  
Sbjct: 90  GNQLTS--LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ-----LTS 135

Query: 320 L-SGLTNLESINLSFTGISD-----GSLRKL-----------AGLSSLKSLNLDARQITD 362
           L      L+ +++S   ++        L KL              S L+ L++   Q+  
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA- 194

Query: 363 TGLAAL-TSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLS 420
               +L T  + L  L  +  R+T      L      L+ L + G  LT          S
Sbjct: 195 ----SLPTLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTSLP----VLPS 241

Query: 421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHLKPLKNL 471
            L  L +S N  LT     L    +GL+SL+V  +++T     L HL     +
Sbjct: 242 ELKELMVSGN-RLT----SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 73/433 (16%), Positives = 139/433 (32%), Gaps = 85/433 (19%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRR 115
           +    +++  S +T    +     +++ +L       I D  L  L      L +L    
Sbjct: 40  NGNAVLNVGESGLTT---LPDCLPAHITTLV------IPDNNLTSLPALPPELRTLEVSG 90

Query: 116 NNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKP 175
           N                L  L +              GL++L   +      +       
Sbjct: 91  N---------------QLTSLPVL-----------PPGLLELSIFSNPL-THLPAL---- 119

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLN 234
               + L  L I  +++T S      GLQ+L++ + +        L SL A    L  L 
Sbjct: 120 ---PSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQ--------LASLPALPSELCKLW 167

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGL 293
               QL+            L+ L++  N++       L    + L  L   +  +    L
Sbjct: 168 AYNNQLTSLPML----PSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL--TSL 216

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSSLKS 352
             L     LK L +S  +     L  L    + L+ + +S   ++  SL  L   S L S
Sbjct: 217 PAL--PSGLKELIVSGNR-----LTSLPVLPSELKELMVSGNRLT--SLPML--PSGLLS 265

Query: 353 LNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 411
           L++   Q+T   L  +L  L+  T ++L G  +++      +  + + S     G +   
Sbjct: 266 LSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL---QALREITSAPGYSGPIIRF 320

Query: 412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL-NVSNSRITSAGLRHLKPLKN 470
            +           L+L+    L        +            N+   S  L  L   +N
Sbjct: 321 DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETEN 380

Query: 471 LRSLTLESCKVTA 483
                    ++++
Sbjct: 381 FIKDAGFKAQISS 393

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 8/128 (6%)

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSDTQVGS 314
           ++ L    I                L+L    I   E L     L     ++ SD ++  
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLGAT--LDQFDAIDFSDNEIRK 56

Query: 315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTG 373
             L     L  L+++ ++   I          L  L  L L    + +   L  L SL  
Sbjct: 57  --LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 374 LTHLDLFG 381
           LT+L +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 100 EHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLES 159
                      L  R       + + A   L     +D      I   L     L +L++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRK-LDGFPLLRRLKT 68

Query: 160 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
           L +   N I          L +L  L ++ + + +   +  L  L+ LT L +   PVT
Sbjct: 69  LLVN-NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 412
           + L A  I     A  T+      LDL G +I               +++     +    
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRK-- 56

Query: 413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNL 471
           +     L  L  L ++ N  +      L   L  L  L ++N+ +     L  L  LK+L
Sbjct: 57  LDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 472 RSLTLESCKVT 482
             L +    VT
Sbjct: 116 TYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 197 IAYLKGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 255
            A      +   L+L G  +    +++L + L     ++ +  ++     + F  +  LK
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLK 67

Query: 256 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
            L +  N I        + L +L  L L +  + +   L  L  L +L  L +  
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 6/115 (5%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
            +     + L +   K+    I  L   L +   ++     +    LD    L  L  L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLL 70

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 288
           +N  ++   G      +  L  L L  N + +   L  L  L +L  L +    +
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
             N    R L++ G  +    ++++   L     ++ S N     + L+    L  L +L
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTL 69

Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 499
            V+N+RI   G    + L +L  L L +  +    D+  L    L +L  
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTY 117

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 208
                ++   L++     I    ++ L + L    ++  S +++    +     L++L  
Sbjct: 14  QYTNAVRDRELDL-RGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKT 68

Query: 209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKFSKIGSLKVLNLGFNEITDE 267
           L +    +         AL  L  L L    L +    +  + + SL  L +  N +T++
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 268 C------LVHLKGLTNL 278
                  +  +  +  L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 13/190 (6%)

Query: 176 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 235
           L     L+ L+        + I  ++ L  L          T     +L A+  +    L
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-----TLQYFSTLKAVDPMRAAYL 422

Query: 236 NRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL 293
           +  +          K+    ++VL+L   ++T   L HL+ L  +  L+L    +     
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALP 479

Query: 294 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKS 352
             L  L  L+ L+ SD  + +  +  ++ L  L+ + L    +    +++ L     L  
Sbjct: 480 PALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 353 LNLDARQITD 362
           LNL    +  
Sbjct: 538 LNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 47/262 (17%), Positives = 89/262 (33%), Gaps = 50/262 (19%)

Query: 245 CEKFSKIGSLKVLNLGFNEIT--DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL 302
           C   +    L    L   + T     L   K L  LE          +     LT +  +
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP---------ENKWCLLTIILLM 392

Query: 303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-----SLKSLNLDA 357
           + L+          L++ S L  ++ +  ++             +       ++ L+L  
Sbjct: 393 RALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 358 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 417
           + +T   L  L  L  +THLDL              +   LR+L              + 
Sbjct: 451 KDLTV--LCHLEQLLLVTHLDL--------------SHNRLRALP-----------PALA 483

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 476
            L  L +L  S N  L    ++ ++ L  L  L + N+R+   A ++ L     L  L L
Sbjct: 484 ALRCLEVLQASDN-ALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 477 ESCKVTANDIKRLQSRD-LPNL 497
           +   +   +  + +  + LP++
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 77  LKDCSNLQSLDF-------NFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG 129
           L+  S L+++D        +   +            +++  L    +  +T   +     
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA-HKDLTV--LCHLEQ 461

Query: 130 LINLVKLDLE--RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
           L+ +  LDL   R   +   L  L+    LE L     N + +  +  ++ L  L+ L +
Sbjct: 462 LLLVTHLDLSHNRLRALPPALAALR---CLEVLQAS-DNALEN--VDGVANLPRLQELLL 515

Query: 188 SCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
             +++   + I  L    +L LLNL+G  + 
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 64/304 (21%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC---TRIHGGLVNLKGLMKLESLNI 162
            N   L F     +      AF+G  +L K+++ +      I   +     L KL  + I
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRI 86

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP----VTA 218
           +  N +   + +    L NL+ L IS + +      +     +  LL+++       +  
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 219 ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 278
                LS       L LN+  + +     F+     ++     N +              
Sbjct: 147 NSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE------------- 191

Query: 279 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 338
             L  D                                     G +    +++S T I  
Sbjct: 192 -ELPNDV----------------------------------FHGASGPVILDISRTRIHS 216

Query: 339 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 398
                L  L  L++ +     +    L  L  L  L    L       + A + R    L
Sbjct: 217 LPSYGLENLKKLRARST--YNLKK--LPTLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

Query: 399 RSLE 402
             + 
Sbjct: 273 HPIC 276

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 37/257 (14%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            N   L F    ++         G  +L  +   +N+ +       F+ L  L ++ +E+
Sbjct: 30  RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 200
                                    N +   + +    L NL+ L IS + +      + 
Sbjct: 89  ------------------------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 201 KGLQKLTLLNLEGCP----VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV 256
               +  LL+++       +       LS       L LN+  + +     F+     ++
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD-TQVGSS 315
                N + +       G +    L++    I       L  L  L+     +  ++ + 
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT- 241

Query: 316 GLRHLSGLTNLESINLS 332
               L  L  L   +L+
Sbjct: 242 ----LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 12/233 (5%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNL-GFNE 263
              L      +      + S  G L  + +++   L     + FS +  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSD----TQVGSSGLRH 319
           +        + L NL+ L + + GI     V+         L++ D      +  +    
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           LS       + L+  GI +       G    +    D   + +         +G   LD+
Sbjct: 152 LS--FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
              RI    +  L N K LR+       L       ++ L +L   +L+   +
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 39/233 (16%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLCNLKCL 305
           +   L     ++         G  +LE + +    + +         L  L  +   K  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTG 364
            L               L NL+ + +S TGI                L++ D   I    
Sbjct: 91  NLLYINPE-----AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 365 LAALTSLTG-LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 423
             +   L+     L L    I +                               + + L 
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHN-------------------------SAFNGTQLD 180

Query: 424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
            LNLS N NL +   ++  G +G V L++S +RI S     L+ LK LR+ + 
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 273 KGLTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 331
           +  ++++ L LD+    +  L  LT     L+ L   +  + S  + +L  L  L+ + L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 332 SFTGISDGSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFG 381
           S   +S G         +L  LNL   +I D + +  L  L  L  LDLF 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 201 KGLQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 259
           +    +  L L+        L+ L      L +L+     L+        K+  LK L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLEL 71

Query: 260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
             N ++    V  +   NL  LNL    I D   +  L  L NLK L+L +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESL 160
           R  S++  L    + +   +          L  L       T I     NL  L KL+ L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA----NLPKLNKLKKL 69

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
            +   N ++           NL  L +S +K+ D S I  LK L+ L  L+L  C VT
Sbjct: 70  ELS-DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 370 SLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 428
           + + +  L L  +R  +         F+ L  L     GLT   + ++  L+ L  L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELS 72

Query: 429 QNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTLESCKVT 482
            N  ++     L      L  LN+S ++I   + +  LK L+NL+SL L +C+VT
Sbjct: 73  DN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           R   +++ L +      +  ++ + D    L  L+   N  LT   +  +  L  L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTS--IANLPKLNKLKKLE 70

Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 499
           +S++R++       +   NL  L L   K+   + I+ L  + L NL S
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKS 117

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 348 SSLKSLNL-DARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNL 398
             L+ +NL +   I    L     AL + T +    + G R  D  A      L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 399 RSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCN-LTDKTLELISGL----TGLVS 449
           +SL +    ++ +G+  +    +  +SL  L +      L +     I+ +    T L+ 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 450 LNVSNSRITSAG 461
                ++     
Sbjct: 156 FGYHFTQQGPRL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 272 LKGLTNLESLNL-DSCGIGDEGLVNL-TGLCN---LKCLELSDTQVGSSGLRHLSGL--- 323
                +LE +NL +   I    L      L     +K   +  T+        L+ +   
Sbjct: 32  QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV 91

Query: 324 -TNLESINLSFTGISDGSLRKLA-GL---SSLKSLNLDAR--QITDTGLAALTSL----T 372
              L+S+N+    IS   +  L   L   +SL  L +D +   + +     + ++    T
Sbjct: 92  NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT 151

Query: 373 GLTHLDLFGARITDSGAA 390
            L        +      A
Sbjct: 152 TLLKFGYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 21/130 (16%)

Query: 229 SLFYLNLNR-CQLSDDGCEKFSKI----GSLKVLNLGFNEITDECLVH----LKGLTNLE 279
            L  +NLN    +     +  ++       +K  ++      D         LK    L+
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96

Query: 280 SLNLDSCGIGDEGLVNL-------TGLCNLKCLELSDTQVGSSGLRHLSGL----TNLES 328
           SLN++S  I   G++ L       T L  L+ ++     +G++    ++ +    T L  
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELR-IDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 329 INLSFTGISD 338
               FT    
Sbjct: 156 FGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLS-FTGISDGSLRKLAGL----SSLKSLNLDARQ 359
            E + T V  +  R  +   +LE +NL+    I   +L+  A      + +K  ++   +
Sbjct: 17  EEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76

Query: 360 ITDTG---LA-ALTSLTGLTHLDLFGARITDSGAAYLRNF----KNLRSLEI--CGGGLT 409
             D     LA  L     L  L++    I+ SG   L        +L  L I      L 
Sbjct: 77  SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136

Query: 410 DAGVKHIKDL----SSLTLLNLSQNC 431
           +     I ++    ++L         
Sbjct: 137 NNVEMEIANMLEKNTTLLKFGYHFTQ 162

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 47/170 (27%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            +L  ++      I    +KA A                      LK    ++  +I   
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEA--------------------LKTNTYVKKFSIVG- 74

Query: 166 NCITDSDMKPLSGL----TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACL 221
               D     L+ +      LKSL +  + ++ SGI  L                    L
Sbjct: 75  TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-----------------VEAL 117

Query: 222 DSLSALGSLFYLNLNRCQLSDDGCEKFSKI----GSLKVLNLGFNEITDE 267
            S ++L  L  ++     L ++   + + +     +L      F +    
Sbjct: 118 QSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 275 LTNLESLNLDSCGIGDEGLVNLTG-LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 333
              +  L LD+C   D  +  LT    NL+ L L +  + S  + +L  L  L+ + LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 334 TGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITD 386
             I  G       L +L  LNL   ++ D   L  L  L  L  LDLF   +T+
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)

Query: 179 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
              ++ L +   K  D  I  L      L  L+L    +    + +L  L  L  L L+ 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSE 80

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGI 288
            ++         K+ +L  LNL  N++ D   L  LK L  L+SL+L +C +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 203 LQKLTLLNLEGCPVTAACLDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
              +  L L+ C      ++ L +   +L +L+L    L         K+  LK L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSE 80

Query: 262 NEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD 309
           N I     +  + L NL  LNL    + D   L  L  L  LK L+L +
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 405
           G S    +++  R   +       ++  L  LD   +            F NL  L +  
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDG-KIEGLTAEFVNLEFLSLIN 58

Query: 406 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRH 464
            GL    V ++  L  L  L LS+N  +      L   L  L  LN+S +++   + L  
Sbjct: 59  VGLIS--VSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 465 LKPLKNLRSLTLESCKVT 482
           LK L+ L+SL L +C+VT
Sbjct: 116 LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNI 162
           R  + +  L      +   +     A  +NL  L L     +   + NL  L KL+ L +
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLIS-VSNLPKLPKLKKLEL 78

Query: 163 KWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAYLKGLQKLTLLNLEGCPVT 217
              N I          L NL  L +S +K+ D S +  LK L+ L  L+L  C VT
Sbjct: 79  S-ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 233 LNLNRCQLSDDGCEKF-SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
           L L+ C+ +D   E   ++  +L+ L+L    +    + +L  L  L+ L L    I   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRIFGG 86

Query: 292 GLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
             +    L NL  L LS  ++   S L  L  L  L+S++L    +++ +  + +    L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 351 KSLN-LDARQITD 362
             L  LD     D
Sbjct: 147 PQLTYLDGYDRED 159

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 393 RNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 451
           R    +R L +      D  ++ +     +L  L+L  N  L    +  +  L  L  L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLIS--VSNLPKLPKLKKLE 77

Query: 452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVS 499
           +S +RI        + L NL  L L   K+   + ++ L  + L  L S
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL--KKLECLKS 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 12/145 (8%)

Query: 76  HLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 135
                +  + ++ +  I   +     L  L     L+    N I    + + +G+ NL  
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEK--ISSLSGMENLRI 74

Query: 136 LDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT 193
           L L R    +I            LE L I   N I  + +  +  L NL+ L +S +K+T
Sbjct: 75  LSLGRNLIKKIENLDAVAD---TLEELWIS-YNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 194 D-SGIAYLKGLQKLTLLNLEGCPVT 217
           +   I  L  L KL  L L G P+ 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 223 SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESL 281
           +LS L +  +L L+   +        S + +L++L+LG N I    + +L  + + LE L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGS 340
            +    I    L  +  L NL+ L +S+ ++ +   +  L+ L  LE + L+   + +  
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 341 LRKLAG-------LSSLKSLN-LDARQITD 362
               A        +  L +L  LD   +  
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKLDGMPVDV 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSL 353
            L+ L   K L LS   +    +  LSG+ NL  ++L    I    +L  +    +L+ L
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEEL 98

Query: 354 NLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICG 405
            +   QI    L+ +  L  L  L +   +IT+      L     L  L + G
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 352 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTD 410
            L+     I     A L++L    HL L    I   S    L   +NLR L +    +  
Sbjct: 29  ELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKK 84

Query: 411 AGVKHIKDLS-SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPL 468
             ++++  ++ +L  L +S N  +    L  I  L  L  L +SN++IT+   +  L  L
Sbjct: 85  --IENLDAVADTLEELWISYN-QIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 469 KNLRSLTLESCKVTANDIKRLQSRD--------LPNL 497
             L  L L    +  +  +   + +        LPNL
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 27/283 (9%)

Query: 99  LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCT---RIHGGLVNLKGLM 155
           +E   G  +L  L  R +              ++L +L +       RI  G + + G+ 
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG------LQKLTLL 209
            L+ L ++    +T +   PL   T      ++   V+ +                L +L
Sbjct: 96  GLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC-------EKFSKIGSLKVLNLGFN 262
           ++          + +    +L  L+L+      +          KF  +  L + N G  
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 263 EITDECLVHLKGLTNLESLNLDSCGI-GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 321
             +  C         L+ L+L    +    G  +      L  L LS T      L+ + 
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-----LKQVP 269

Query: 322 G--LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                 L  ++LS+  +          L  + +L+L      D
Sbjct: 270 KGLPAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 45/249 (18%), Positives = 77/249 (30%), Gaps = 27/249 (10%)

Query: 229 SLFYLNLNRCQLSDDGCEKFSKIGS---LKVLNLGFNEITDECLVHLKGLT--NLESLNL 283
           SL  L +   ++         ++     L+ L L   E+T      L   T  +L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 284 DSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 339
            +            +       LK L ++     +     +     L +++LS       
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 340 S-------LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAY 391
                     K   L  L   N      +    A   +   L  LDL    + D+ GA  
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 392 LRNFKNLRSLEICGGGLTDAGVKHIKD--LSSLTLLNLSQNCNLTDKTLELISGLTGLVS 449
                 L SL +   GL       +     + L++L+LS N  L          L  + +
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYN-RLD--RNPSPDELPQVGN 300

Query: 450 LNVSNSRIT 458
           L++  +   
Sbjct: 301 LSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 39/222 (17%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 304
             K  SLK L +    I    L       G++ L+ L L++  +       L        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
             L+        LR++S  T    +      +             LK L++      +  
Sbjct: 124 NILN--------LRNVSWATRDAWLAELQQWL----------KPGLKVLSIAQAHSLNFS 165

Query: 365 LAALTSLTGLTHLDL----FGARITDSGAAYLRNFKNLRSLEICGGGLT---DAGVKHIK 417
              +     L+ LDL             A     F  L+ L +   G+            
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 459
               L  L+LS N              + L SLN+S + +  
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 49/246 (19%), Positives = 84/246 (34%), Gaps = 20/246 (8%)

Query: 155 MKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKVTDSGIAYLKGLQKLTLLNLE 212
           + + +  I          +  +SGL  L  ++L+++ +       A    L  L L N+ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 213 GCPVTAACLDSLSALG-SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE---- 267
                A   +    L   L  L++ +    +  CE+     +L  L+L  N    E    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 268 ---CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGL 323
              C +    L  L   N                   L+ L+LS      ++G       
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 324 TNLESINLSFTGIS--DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           + L S+NLSFTG+      L      + L  L+L   ++      +   L  + +L L G
Sbjct: 253 SQLNSLNLSFTGLKQVPKGL-----PAKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKG 305

Query: 382 ARITDS 387
               DS
Sbjct: 306 NPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 13/180 (7%)

Query: 307 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
            +D    +  ++ LS L  L                ++ G+S L+ L L+  ++T T   
Sbjct: 55  EADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 367 ALTSLTG--LTHLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHIKDLS 420
            L   TG  L  L+L         A            L+ L I      +   + ++   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 421 SLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS---AGLRHLKPLKNLRSL 474
           +L+ L+LS N  L ++ L           L  L + N+ + +              L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 28/155 (18%)

Query: 253 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD------EGLVNLT-------- 297
              +L+L  N ++          LTNL SL L    +          + NL         
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 298 ----------GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKL 344
                      L  L+ L L +  +          +  L+ + LS    +      ++  
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             L  L  L+L + ++    L  L  L       L
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 86  LDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TR 143
           L  N   ++          L+NL SL    +N +     +AF  + NL  LDL       
Sbjct: 46  LSHNNLSRLRAEWT--PTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 144 IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYL 200
           +   L     L  LE L + + N I   D      +  L+ L +S ++++      I   
Sbjct: 103 LDEFL--FSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
             L KL LL+L    +    L  L  L +     L 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 32/184 (17%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIK 163
           S    L    NN    +       L NL  L L       I                   
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------------- 83

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS 223
                          + NL+ L +S + +          LQ L +L L    +     ++
Sbjct: 84  ------------FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 224 LSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 280
              +  L  L L++ Q+S    +  +  +K+  L +L+L  N++    L  L+ L     
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 281 LNLD 284
             L 
Sbjct: 192 NGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 14/162 (8%)

Query: 348 SSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEIC 404
           S    L+L    ++        T LT L  L L    +    S A       NLR L++ 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS---AG 461
              L         DL +L +L L  N ++          +  L  L +S ++I+      
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 462 LRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 503
           ++    L  L  L L S     N +K+L   DL  L ++   
Sbjct: 156 IKDGNKLPKLMLLDLSS-----NKLKKLPLTDLQKLPAWVKN 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 66/356 (18%), Positives = 108/356 (30%), Gaps = 79/356 (22%)

Query: 174 KPLSGLTN-LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDS--LSAL-GS 229
           +P   L   L  L+     V   G   + G  K  +           CL       +   
Sbjct: 135 QPYLKLRQALLELR-PAKNVLIDG---VLGSGKTWV-------ALDVCLSYKVQCKMDFK 183

Query: 230 LFYLNLNRC---------------QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG 274
           +F+LNL  C               Q+  +   +     ++K   L  + I  E    LK 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKS 240

Query: 275 LTNLESL-NLDSCGIGDEGLVNLTGLCNLKCLEL---SDTQV----GSSGLRHLSGLTNL 326
                 L  L    + +    N     NL C  L      QV     ++   H+S    L
Sbjct: 241 KPYENCLLVLL--NVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS----L 291

Query: 327 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD 386
           +  +++ T   D     L      K L+   +      L      T    L +    I D
Sbjct: 292 DHHSMTLT--PDEVKSLLL-----KYLDCRPQD-----LPREVLTTNPRRLSIIAESIRD 339

Query: 387 SGAAYLRNFKNL------RSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLE 439
            G A   N+K++        +E     L  A  + +   LS         + ++    L 
Sbjct: 340 -GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLS 393

Query: 440 LI--SGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTANDIKRLQSR 492
           LI    +   V + V+     S   +  K    ++ S+ LE  KV   +   L   
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLENEYALHRS 448

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 49/237 (20%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG----IGDEGLVNLTGLCNLKCLELS 308
           S + L L    +          L N+  + +        +      NL+    +  +E+ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS---KVTHIEIR 88

Query: 309 DTQVGSSGLRHLS-----GLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNL-DARQIT 361
           +T+     L ++       L  L+ + +  TG+     L K+        L + D   +T
Sbjct: 89  NTR----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 362 DTGLAALTSLTGLT-HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD 418
              + A   L   T  L L+    T     A     F                      +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----F----------------------N 177

Query: 419 LSSLTLLNLSQNCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSL 474
            + L  + L++N  LT    +   G+ +G   L+VS + +T+   + L+ LK L + 
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEI 264
              L L    +      + S L ++  + ++    L       F  +  +  + +     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 265 TDECLVHL-----KGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKCLELSD-TQVGSSGL 317
               L ++     K L  L+ L + + G+     L  +        LE++D   + S  +
Sbjct: 93  ----LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 318 RHLSGLTN-LESINLS---FTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL- 371
               GL N   ++ L    FT +   +       + L ++ L+  + +T     A   + 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFN----GTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 372 TGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
           +G + LD+    +T   +  L + K L + 
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 14/213 (6%)

Query: 81  SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 140
            + Q+L       +          L N++ +    +  +      +F  L  +  +++  
Sbjct: 31  PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 141 C---TRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSG 196
               T I      LK L  L+ L I         D+  +        L+I+    +T   
Sbjct: 90  TRNLTYIDPDA--LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 197 IAYLKGLQKLTL-LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK-FSKIGS- 253
           +   +GL   TL L L     T+    + +    L  + LN+ +      +  F  + S 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 254 LKVLNLGFNEIT---DECLVHLKGLTNLESLNL 283
             +L++    +T    + L HLK L    +  L
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 360 ITDTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG-GGLTDAGVKHIK 417
           +T   +  + SL      L L    +    +    N  N+  + +     L         
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS-AGLRHLKPLKNLRSLTL 476
           +LS +T + +    NLT    + +  L  L  L + N+ +     L  +        L +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 477 ESCKVTANDIKRLQSRDLPNLVS 499
                    +  +       L +
Sbjct: 138 TD----NPYMTSIPVNAFQGLCN 156

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 32/246 (13%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--LTNLESLNLDSCGIGD 290
            N     +S    + FS     +   L   E  +E +  LK   +     L L+   +  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLAGLSS 349
              +       +  LE++        L  L     +LE ++     +S  +L +L   +S
Sbjct: 74  ---LPDNLPPQITVLEITQNA-----LISLPELPASLEYLDACDNRLS--TLPEL--PAS 121

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           LK L++D  Q+T            L +++    ++T           +L  L +    LT
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLT 173

Query: 410 DAGVKHIKDLSSLTLLNLSQNC--NLTDKTLELISGLTGLVSLNVSNSRITS--AGLRHL 465
                  +   SL  L++S N   +L    +         +      +RIT     +  L
Sbjct: 174 FL----PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 466 KPLKNL 471
            P   +
Sbjct: 230 DPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 48/288 (16%)

Query: 106 SNLTSLS-FRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIK 163
           +N  SLS     N I+      F+      K  L    R     L+    + +   L + 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 164 WCNCITDSDMKPLSGLTNLKSLQISCSKVT---DSGIAYLKGLQKLTLLNLEGCPVTAAC 220
               ++     P +    +  L+I+ + +    +        L+ L   +          
Sbjct: 68  -RLNLSSL---PDNLPPQITVLEITQNALISLPEL----PASLEYLDACDNR-------- 111

Query: 221 LDSL-SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLE 279
           L +L     SL +L+++  QL+            L+ +N   N++T   L  L   T+LE
Sbjct: 112 LSTLPELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLT--MLPEL--PTSLE 163

Query: 280 SLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHL----SGLTNLESINLSFTG 335
            L++ +  +    L  L    +L+ L++S        L  L        + E   + F  
Sbjct: 164 VLSVRNNQLTF--LPEL--PESLEALDVSTNL-----LESLPAVPVRNHHSEETEIFF-R 213

Query: 336 ISDGSLRKL----AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
             +  +  +      L    ++ L+   ++     +L+  T       
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 291
            L+L+   L             L  LNL   E+T   L     L  L +L+L    +   
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL 92

Query: 292 GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAGLS 348
            L+    L  L  L++S  ++ S  L  L GL  L+ + L       +  G L       
Sbjct: 93  PLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TP 148

Query: 349 SLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
            L+ L+L    +T+     L  L  L  L L
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 335
            +   L+L    +    L  L     L  L L   ++    L+    L  L +++LS   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 336 ISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 394
           +   SL      L +L  L++   ++T   L AL  L  L  L L G  +       L  
Sbjct: 89  LQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 395 FKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQN 430
              L  L +    LT+  AG+  +  L +L  L L +N
Sbjct: 147 TPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++LS   +   SL  L   + L  LNLD  ++T   L    +L  L  LDL   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           +  S     +    L  L++    LT    G   ++ L  L  L L  N  L      L+
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLGELQELYLKGN-ELKTLPPGLL 144

Query: 442 SGLTGLVSLNVSNSRITS------AGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP 495
           +    L  L+++N+ +T        GL +L  L  L+  +L +          L    L 
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 496 N 496
            
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 29/180 (16%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            + T L    N  +    +        L +L+L+R               +L  L +   
Sbjct: 31  KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA--------------ELTKLQVDG- 74

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
                        L  L +L +S +++  S     + L  LT+L++    +T+  L +L 
Sbjct: 75  ------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            LG L  L L   +L        +    L+ L+L  N +T+     L GL NL++L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 10/175 (5%)

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-- 289
            L+L   +LS    + F ++  L++L L  N++        K L NLE+L +    +   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLRKLAG 346
             G+     L NL  L L   Q+ S   R    LT L  ++L       +  G   KL  
Sbjct: 101 PIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-- 156

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 401
            +SLK L L   Q+      A   LT L  L L   ++         + + L+ L
Sbjct: 157 -TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 261
            L KL LL L    +          L +L  L +   +L       F ++ +L  L L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 262 NEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           N++       L       LT L  L+L            L  L                G
Sbjct: 119 NQLK-----SLPPRVFDSLTKLTYLSLGYN--------ELQSL--------------PKG 151

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           +     LT+L+ + L    +          L+ LK+L LD  Q+      A  SL  L  
Sbjct: 152 V--FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 377 LDLFG 381
           L L  
Sbjct: 210 LQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 35/206 (16%)

Query: 276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESIN 330
            + + L+L S  +          L  L+ L L+D +     L+ L       L NLE++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLW 91

Query: 331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 390
           ++   +    +     L +L  L LD  Q+         SLT LT+L L    +      
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ----- 146

Query: 391 YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL 450
                    SL          GV     L+SL  L L  N  L          LT L +L
Sbjct: 147 ---------SLP--------KGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186

Query: 451 NVSNSRITSAGLRHLKPLKNLRSLTL 476
            + N+++          L+ L+ L L
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 10/178 (5%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            + + ++L    +S    +    L+ L+ L L+  ++          L  L  L +   +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTD--AGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 441
           +            NL  L +    L      V     L+ LT L+L  N  L      + 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYN-ELQSLPKGVF 153

Query: 442 SGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
             LT L  L + N+++          L  L++L L++     N +KR+      +L  
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-----NQLKRVPEGAFDSLEK 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 9/174 (5%)

Query: 116 NNAITAQGMKAFAGLINLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 173
           +N +++   KAF  L  L  L L       +  G+     L  LE+L +   N +    +
Sbjct: 46  SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTD-NKLQALPI 102

Query: 174 KPLSGLTNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLF 231
                L NL  L++  +++      +     L KLT L+L    + +        L SL 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160

Query: 232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            L L   QL       F K+  LK L L  N++          L  L+ L L  
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 14/166 (8%)

Query: 103 RGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERC------TRIHGGLVNLKGLMK 156
             L+ L  L    +N +       F  L NL  L +           +   LVNL  L  
Sbjct: 58  HRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL-- 114

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
              L+    N +     +    LT L  L +  +++          L  L  L L    +
Sbjct: 115 --RLD---RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 262
                 +   L  L  L L+  QL       F  +  LK+L L  N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 253 SLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSD 309
               L L  NE T  E     K L  L  +N  +  I D  EG     G   +  + L+ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--FEGASGVNEILLTS 90

Query: 310 TQVGSSGLRHLSGLTNLESINLSF---TGISDGSLRKLAGLSSLKSLNLDARQITDTGLA 366
            ++ +   +   GL +L+++ L     T + + S      LSS++ L+L   QIT     
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPG 147

Query: 367 ALTSLTGLTHLDLFG 381
           A  +L  L+ L+L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 85  SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE--RCT 142
            L+ N    +   G+   + L  L  ++F  NN IT     AF G   + ++ L   R  
Sbjct: 38  RLNNNEFTVLEATGI--FKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 143 RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC---SKVTDSGIAY 199
            +   +   KGL  L++L ++  N IT        GL++++ L +     + V       
Sbjct: 95  NVQHKM--FKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 200 LKGLQKLTLLN 210
           L  L  L LL 
Sbjct: 152 LHSLSTLNLLA 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 20/159 (12%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS------- 285
           L+L    L+      F  +  L  LNL +N++          LT L +L L +       
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS---FTGISDGSLR 342
            G+ D        L  L  L L   Q+ S        LT L+ + L+      I  G+  
Sbjct: 100 LGVFD-------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           KL   ++L++L+L   Q+      A   L  L  + LFG
Sbjct: 153 KL---TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 49/247 (19%)

Query: 245 CEKFSKIGSLKVLNLGFNEITDECLV--HLKGLTNLESLNLDSCGIGDEGLVNLTG---- 298
           C+  ++   +  L+L    +     +   L  L  L  L +        G+ NL G    
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-------GGINNLVGPIPP 95

Query: 299 ----LCNLKCLELSDTQVGSSGL--RHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLK 351
               L  L  L ++ T V  SG     LS +  L +++ S+  +S G+L   ++ L +L 
Sbjct: 96  AIAKLTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLV 152

Query: 352 SLNLDARQITDT---GLAALTSL-----------TG----------LTHLDLFGARITDS 387
            +  D  +I+        + + L           TG          L  +DL    +   
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 447
            +    + KN + + +    L    +  +    +L  L+L  N  +     + ++ L  L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFL 270

Query: 448 VSLNVSN 454
            SLNVS 
Sbjct: 271 HSLNVSF 277

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)

Query: 80  CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 139
                 L       +    L HL G  NLT L       +    ++   GL  L  L + 
Sbjct: 7   PHGSSGLRCTRDGALDS--LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 140 RC--TRIHGGLVNLKGLMKLESLNI 162
           +     +           +L  LN+
Sbjct: 65  KSGLRFVAPDA--FHFTPRLSRLNL 87

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLS----FTGISDGSLRKLAGLSSLKSLNLD 356
            L+C            L HL G  NL  + +        +    LR   GL  L++L + 
Sbjct: 12  GLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIV 64

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARIT 385
              +      A      L+ L+L    + 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 463
           C        + H+    +LT L +    +L    L  + GL  L +L +  S +      
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 464 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 497
                  L  L L       N ++ L  + +  L
Sbjct: 75  AFHFTPRLSRLNLSF-----NALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 72  SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 131
             L HL    NL  L       +    L  LRGL  L +L+    + +      AF    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VKSGLRFVAPDAFHFTP 80

Query: 132 NLVKLDLERC--TRIHGGLVNLKGLMKLESLNIKW-CNC 167
            L +L+L       +    V    L +L        C+C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 5/134 (3%)

Query: 305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 364
           + L    +        S    L  I+LS   IS+ +     GL SL SL L   +IT+  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 424
            +    L  L  L L   +I        ++  NL  L +    L          L ++  
Sbjct: 97  KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 425 LNLSQN-----CNL 433
           ++L+QN     C+L
Sbjct: 157 MHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
             +  I L    I        +    L+ ++L   QI++    A   L  L  L L+G  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-- 89

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
                     N   +  L           +   + L SL LL L+ N  +    ++    
Sbjct: 90  ----------N--KITEL--------PKSL--FEGLFSLQLLLLNAN-KINCLRVDAFQD 126

Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 478
           L  L  L++ ++++ +       PL+ ++++ L  
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 266 DECLVHLK-GLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGL 323
           + C+  L+   T+L+ +N+++   +  E + +L                           
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLI--------------------EAACNS 69

Query: 324 TNLESINLSFTGISDGSLRKLAGL----SSLKSLNLDARQITDTGLA----ALTSLTGLT 375
            ++E  +L+ T ISD   R L  L     SL+ LN+++  +T   LA    +      + 
Sbjct: 70  KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129

Query: 376 HLDLFGARITDSGAAYLRNF----KNLRSLEICGGGLTDAGVKHI 416
                  R +  G     +     +   SL   G        +H 
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.7
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	80.4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.8e-45  Score=365.57  Aligned_cols=437  Identities=21%  Similarity=0.228  Sum_probs=244.1

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (503)
                      +.++.|+++++.+++..+..|.++++|++|++++| .+....+.+|+.+++|++|++++|. +....|..+.++++|++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence            45666777776666555556666777777777665 4555555666666677777776665 334445566666677777


Q ss_pred             eccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCC--EEEcCCC
Q 010711          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC  214 (503)
Q Consensus       137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~  214 (503)
                      ++++|......+..+.++++|++|++++|. +.......+..+++|++|+++++.+....+..+..+++|+  .+++++|
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            776654333334556666666666666644 2222223333466666666666666655555555555555  5555555


Q ss_pred             CCcH---------------------------------------------------------------------------H
Q 010711          215 PVTA---------------------------------------------------------------------------A  219 (503)
Q Consensus       215 ~~~~---------------------------------------------------------------------------~  219 (503)
                      .+..                                                                           .
T Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            4332                                                                           1


Q ss_pred             HHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh-hHHHHHhc
Q 010711          220 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG  298 (503)
Q Consensus       220 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~  298 (503)
                      .+..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. .....+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            11223444555555555555542 33344555555555555555554444444555555555555554431 12223445


Q ss_pred             CCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcCCCCCC
Q 010711          299 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT  375 (503)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  375 (503)
                      +++|++|++++|.+....  ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            555666666555554433  3344555666666666665554444445556666666666665554322 2245566666


Q ss_pred             EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH---HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711          376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  452 (503)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l  452 (503)
                      .|++++|.+....+..+..+++|++|++++|.+.+..   +..+..+++|+.|++++| .++...+..+.++++|+.|++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence            6666666665555555566666666666666655421   134555666666666666 566655556666666666666


Q ss_pred             ccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711          453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  501 (503)
Q Consensus       453 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~  501 (503)
                      ++|+++...+..+..+++| .|++++|.++......+.  .+++|+.+.
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~--~l~~L~~L~  553 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP--ILSQQRTIN  553 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH--HHHTSSEEE
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc--cCCCCCEEe
Confidence            6666666666666666666 666666665543332232  334555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-45  Score=379.09  Aligned_cols=443  Identities=21%  Similarity=0.192  Sum_probs=210.7

Q ss_pred             ceeEEecCCCCCCChhHHHH--HHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCC
Q 010711           32 ALQDLCLGQYPGVNDKWMDV--IASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLT  109 (503)
Q Consensus        32 ~l~~l~l~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  109 (503)
                      .++.+.+..+. +.......  ....+++|+.|+++++.+.+..  .+..+++|++|++++| .+....+. ++.+++|+
T Consensus       152 ~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~  226 (768)
T 3rgz_A          152 SLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQ  226 (768)
T ss_dssp             TCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCC
T ss_pred             CCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCC-cCCCCCcc-cccCCCCC
Confidence            46666665442 22111111  1234555666666555544322  1245555555555554 22222122 45555555


Q ss_pred             EEEcCCCccccHHHHHHHhCCCCCcEEeccCcccc----------------------cCccccccC-CccccEeeccCCc
Q 010711          110 SLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRI----------------------HGGLVNLKG-LMKLESLNIKWCN  166 (503)
Q Consensus       110 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~-l~~L~~L~l~~~~  166 (503)
                      +|++++|. +.+..|..+.++++|++|++++|...                      ...+..+.. +++|++|++++|.
T Consensus       227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          227 HLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             EEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             EEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence            55555554 33344555555555555555554322                      222333322 2445555554432


Q ss_pred             CCCccccccccCCCCCCEEEeecccCCchhH-HhhhcCCCCCEEEcCCCCCcHHHHHHhhC-------------------
Q 010711          167 CITDSDMKPLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSA-------------------  226 (503)
Q Consensus       167 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------------------  226 (503)
                       +....+..+..+++|++|+++++.+.+..+ ..+..+++|++|++++|.+....+..+..                   
T Consensus       306 -l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          306 -FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             -EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred             -CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence             222233444455555555555554442222 22445555555555555433222222222                   


Q ss_pred             --------CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhc
Q 010711          227 --------LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG  298 (503)
Q Consensus       227 --------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~  298 (503)
                              +++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus       385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  464 (768)
T 3rgz_A          385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY  464 (768)
T ss_dssp             CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence                    223333333333333333344444445555555554444333444444555555555555444444444445


Q ss_pred             CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEE
Q 010711          299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  378 (503)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  378 (503)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..++.+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            55555555555555444444455555555555555555544444455555555555555555544444455555555555


Q ss_pred             ccCCccChHHHHH-------------------------------------------------------------------
Q 010711          379 LFGARITDSGAAY-------------------------------------------------------------------  391 (503)
Q Consensus       379 l~~~~~~~~~~~~-------------------------------------------------------------------  391 (503)
                      +++|.+....|..                                                                   
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            5555443211111                                                                   


Q ss_pred             ---HhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCC
Q 010711          392 ---LRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL  468 (503)
Q Consensus       392 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  468 (503)
                         +..+++|+.|++++|.+++..+..++.++.|+.|++++| .+++..|..+.++++|+.|++++|+++...|..+..+
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence               112344555555555555555555555555555566555 5555555555555556666666655555555555555


Q ss_pred             cccceEEeccCCCC
Q 010711          469 KNLRSLTLESCKVT  482 (503)
Q Consensus       469 ~~L~~L~l~~~~~~  482 (503)
                      ++|++|++++|+++
T Consensus       704 ~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          704 TMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCCSEEECCSSEEE
T ss_pred             CCCCEEECcCCccc
Confidence            55666666555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.1e-45  Score=373.05  Aligned_cols=436  Identities=23%  Similarity=0.220  Sum_probs=259.9

Q ss_pred             cCCCeeEEEccCCCCChhhhh--hccCCCCCCEEecCCCeecChhhHHHh-hCCCCCCEEEcCCCccccHHHHHH---Hh
Q 010711           55 QGSSLLSVDLSGSDVTDSGLI--HLKDCSNLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKA---FA  128 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~  128 (503)
                      .+++|++|+++++.+.+..+.  .++++++|++|++++|. +....+..+ .++++|++|++++|. +.+..+..   +.
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~  175 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSD  175 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTT
T ss_pred             cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhc
Confidence            357777888887777766666  67778888888888763 332222222 567788888888776 34444544   67


Q ss_pred             CCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCE
Q 010711          129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  208 (503)
Q Consensus       129 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  208 (503)
                      ++++|++|++++|......  .+..+++|++|++++|.... ..+ .+..+++|++|+++++.+.+..+..+..+++|++
T Consensus       176 ~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  251 (768)
T 3rgz_A          176 GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL  251 (768)
T ss_dssp             CCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCS-CCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred             cCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCC-CCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence            7888888888876533222  23678888888888865433 222 3778888888888888888777778888888888


Q ss_pred             EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhc-CCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCC
Q 010711          209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG  287 (503)
Q Consensus       209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  287 (503)
                      |++++|.+....+..  .+++|++|++++|.+....+..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus       252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence            888888765432221  5667777777777665444554444 3677777777776665555666677777777777776


Q ss_pred             CCh-hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCC-CCCeeeccCCCCChHHHHHHhC--CCCCCEeecCCCCCCHh
Q 010711          288 IGD-EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLT-NLESINLSFTGISDGSLRKLAG--LSSLKSLNLDARQITDT  363 (503)
Q Consensus       288 ~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~  363 (503)
                      +.+ .+...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..  +++|++|++++|.+++.
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence            552 2333466677777777777765543333333333 5555555555443322222222  44555555555555544


Q ss_pred             HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc
Q 010711          364 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  443 (503)
Q Consensus       364 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  443 (503)
                      .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+.+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~  488 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSN  488 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGG
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhc
Confidence            4444555555555555555554444444555555555555555555444445555555555555555 444444445555


Q ss_pred             CCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCccccc
Q 010711          444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR  501 (503)
Q Consensus       444 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~  501 (503)
                      +++|+.|++++|++....|..+..+++|++|++++|.++......+.  .+++|+.|+
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~  544 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEE
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEE
Confidence            55555555555555544445555555555555555555433333332  444554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-43  Score=355.93  Aligned_cols=422  Identities=21%  Similarity=0.186  Sum_probs=325.5

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      .+++|++|+++++.+.+..+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....+..+.++++|+
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~  132 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLE  132 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCC
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCccc
Confidence            4666777777777666655666677777777777765 4555555566667777777777665 3343445566666777


Q ss_pred             EEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC-------------------------------
Q 010711          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK-------------------------------  183 (503)
Q Consensus       135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-------------------------------  183 (503)
                      +|++++|.......+.+..+++|++|++++|. +....+..+..+++|+                               
T Consensus       133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  211 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG  211 (606)
T ss_dssp             EEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred             EEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence            77776654333222333336666666666543 3333333344444444                               


Q ss_pred             ----------------------------------------------EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCc
Q 010711          184 ----------------------------------------------SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT  217 (503)
Q Consensus       184 ----------------------------------------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  217 (503)
                                                                    .++++++.+.......+..+++|+.|++++|.+.
T Consensus       212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  291 (606)
T 3t6q_A          212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS  291 (606)
T ss_dssp             CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred             chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence                                                          4444444444444445777899999999999887


Q ss_pred             HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH-HHhhCCCCCCEEEccCCCCChhH--HH
Q 010711          218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSCGIGDEG--LV  294 (503)
Q Consensus       218 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~  294 (503)
                      . .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....  +.
T Consensus       292 ~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          292 E-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             C-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             C-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence            4 35567889999999999999998878889999999999999997764333 34778999999999999887655  56


Q ss_pred             HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCC
Q 010711          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTG  373 (503)
Q Consensus       295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  373 (503)
                      .+..+++|++|++++|.+.......+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            78889999999999999887777788899999999999998765433 33778999999999999998877788889999


Q ss_pred             CCEEEccCCccChHH---HHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711          374 LTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  450 (503)
Q Consensus       374 L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L  450 (503)
                      |+.|++++|.+....   +..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++...+..+.++++| .|
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EE
Confidence            999999999887632   246788999999999999999988888999999999999999 8999899999999999 99


Q ss_pred             ecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          451 NVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       451 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ++++|.++...+..+..+++|+.|++++|+++
T Consensus       529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          529 NLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             ECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            99999999988888889999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-42  Score=351.72  Aligned_cols=181  Identities=23%  Similarity=0.301  Sum_probs=114.5

Q ss_pred             hhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC--HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCC
Q 010711          320 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT--DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN  397 (503)
Q Consensus       320 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  397 (503)
                      +..+++|+.|++++|.+....+..+..+++|+.|++++|.+.  +..+..+..+++|+.|++++|.+...++..+..+++
T Consensus       426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~  505 (680)
T 1ziw_A          426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK  505 (680)
T ss_dssp             GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence            334444444444444333322333444455555555554443  222344566777777777777777666666777778


Q ss_pred             CCeEEecCCCCChhHHH--------hhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc
Q 010711          398 LRSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK  469 (503)
Q Consensus       398 L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~  469 (503)
                      |+.|++++|.+++....        .+..+++|+.|++++| .++..++..|.++++|+.|++++|.++.+++..+..++
T Consensus       506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  584 (680)
T 1ziw_A          506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV  584 (680)
T ss_dssp             CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence            88888888777654222        2566778888888887 67766666677888888888888888877667777788


Q ss_pred             ccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          470 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       470 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      +|+.|++++|.++......+. ..+++|+.+.+
T Consensus       585 ~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l~l  616 (680)
T 1ziw_A          585 SLKSLNLQKNLITSVEKKVFG-PAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECTTSCCCBCCHHHHH-HHHTTCSEEEC
T ss_pred             CCCEEECCCCcCCccChhHhc-ccccccCEEEc
Confidence            888888888877765544332 23456665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.8e-42  Score=345.28  Aligned_cols=433  Identities=23%  Similarity=0.229  Sum_probs=278.8

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .+++++|+++++.+++..+..|.++++|++|++++| .+....+.+|.++++|++|++++|. +....|..|+++++|++
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~  108 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN  108 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence            356777777777777666666777777777777776 5665556667777777777777775 44555677777777777


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCC-----------
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-----------  204 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-----------  204 (503)
                      |++++|......+..++++++|++|++++|.......+..+.++++|++|+++++.+....+..+..++           
T Consensus       109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            777776544444455777777777777775533323456677777777777777766654443333222           


Q ss_pred             ----------------CCCEEEcCCCCCc-HHHHHHhhCCCCCC------------------------------------
Q 010711          205 ----------------KLTLLNLEGCPVT-AACLDSLSALGSLF------------------------------------  231 (503)
Q Consensus       205 ----------------~L~~L~l~~~~~~-~~~~~~l~~l~~L~------------------------------------  231 (503)
                                      +|+.|++++|.+. ...+..+..+++++                                    
T Consensus       189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence                            3444444444332 12222233333333                                    


Q ss_pred             --------------------EEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChh
Q 010711          232 --------------------YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE  291 (503)
Q Consensus       232 --------------------~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  291 (503)
                                          .+++.++.+....  .+..+++|+.|++++|.+. ..+ .+ .+++|+.|++++|.....
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             cccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccc
Confidence                                3333333222111  2333344444444444442 222 12 445555555555422211


Q ss_pred             HHHHHhcCCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-Hhh
Q 010711          292 GLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL  368 (503)
Q Consensus       292 ~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~  368 (503)
                      .  .+..+++|++|++++|.+....  ...+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+..+ ..+
T Consensus       344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~  420 (606)
T 3vq2_A          344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF  420 (606)
T ss_dssp             C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred             h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhh
Confidence            1  3345667777777777665432  445667777888887777665422 445677888888888887776554 566


Q ss_pred             cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh-HHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711          369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  447 (503)
Q Consensus       369 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L  447 (503)
                      ..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++| .++...+..+.++++|
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence            7788888888888888776677778888888888888888763 5667778888999999888 7888777788888999


Q ss_pred             cEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCC-CcccccC
Q 010711          448 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFRP  502 (503)
Q Consensus       448 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~l~~  502 (503)
                      +.|++++|+++...+..+..+++|++|++++|.++..... +.  .+| +|+.+.+
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~--~l~~~L~~l~l  552 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQ--HFPKSLAFFNL  552 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GG--GSCTTCCEEEC
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-Hh--hhcccCcEEEc
Confidence            9999999988888788888888999999999988743322 33  555 4777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-41  Score=347.48  Aligned_cols=442  Identities=21%  Similarity=0.242  Sum_probs=250.4

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      .+++|++|+++++.+++..+..+.++++|++|++++| .+.......|+.+++|++|++++|. +....+..|.++++|+
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCC
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCC
Confidence            4677788888877777666666777788888888776 5555555567777788888887775 3444455677777888


Q ss_pred             EEeccCcccccCccccccCCccccEeeccCCcCCCccccccc--cCCCCCCEEEeecccCCchhHHhhhcC---------
Q 010711          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL--SGLTNLKSLQISCSKVTDSGIAYLKGL---------  203 (503)
Q Consensus       135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~---------  203 (503)
                      +|++++|......+..+.++++|++|++++|. +....+..+  ..+++|++|+++++.+....+..+..+         
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence            88887765444455566777788888887754 333333333  245778888887776654443333332         


Q ss_pred             ------------------CCCCEEEcCCCCCcHHHHHHhhCC--CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711          204 ------------------QKLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       204 ------------------~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  263 (503)
                                        ++|+.|+++++.+....+..+..+  ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence                              233334444443332222233333  236666666655555444555555666666665555


Q ss_pred             CChHHHHHhh---------------------------------CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCC
Q 010711          264 ITDECLVHLK---------------------------------GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  310 (503)
Q Consensus       264 ~~~~~~~~l~---------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  310 (503)
                      +....+..+.                                 .+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            4433333333                                 3444555555555444433344444555555555443


Q ss_pred             ccChh--hHHHhh--CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC-------------------------
Q 010711          311 QVGSS--GLRHLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-------------------------  361 (503)
Q Consensus       311 ~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------  361 (503)
                      .+...  ....+.  ..++|+.|++++|.+....+..+..+++|+.|++++|.+.                         
T Consensus       364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence            21100  000000  0122333333333333333333444555555555555543                         


Q ss_pred             HhHHHhhcCCCCCCEEEccCCccC--hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhH-
Q 010711          362 DTGLAALTSLTGLTHLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-  438 (503)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-  438 (503)
                      ...+..+..+++|+.|++++|.+.  ...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++.... 
T Consensus       444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~  522 (680)
T 1ziw_A          444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKH  522 (680)
T ss_dssp             ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGST
T ss_pred             eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-Cccccchh
Confidence            333333444445555555544433  122344566777777777777777666666777777777777777 5555422 


Q ss_pred             -------HHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          439 -------ELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       439 -------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                             ..+.++++|+.|++++|.+..+++..+..+++|+.|++++|.++......+.  .+++|+.|.+
T Consensus       523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~L  591 (680)
T 1ziw_A          523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN--NQVSLKSLNL  591 (680)
T ss_dssp             TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEEC
T ss_pred             hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC--CCCCCCEEEC
Confidence                   1256677888888888877776666677788888888888877754433333  6677777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.6e-42  Score=343.07  Aligned_cols=416  Identities=20%  Similarity=0.189  Sum_probs=319.2

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      .+++|++|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|++++|. +....+..++++++|+
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  131 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLK  131 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCC
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCC
Confidence            4677777888777777666666777777888887776 4555556677777777777777775 3333344577777777


Q ss_pred             EEeccCccccc-CccccccCCccccEeeccCCcCCCcccccccc---------------------------CCCCCCEEE
Q 010711          135 KLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---------------------------GLTNLKSLQ  186 (503)
Q Consensus       135 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------------------------~l~~L~~L~  186 (503)
                      +|++++|.... ..+..+.++++|++|++++|. +....+..+.                           ...+|++|+
T Consensus       132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~  210 (606)
T 3vq2_A          132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT  210 (606)
T ss_dssp             EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             EEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence            77777765433 346667777777777777653 2222221111                           122567777


Q ss_pred             eecccCCch-hH--------------------------------------------------------HhhhcCCCCCEE
Q 010711          187 ISCSKVTDS-GI--------------------------------------------------------AYLKGLQKLTLL  209 (503)
Q Consensus       187 l~~~~~~~~-~~--------------------------------------------------------~~l~~~~~L~~L  209 (503)
                      ++++.+... .+                                                        ..+..+++|+.+
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  290 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM  290 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence            766654311 11                                                        114556778888


Q ss_pred             EcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC
Q 010711          210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  289 (503)
Q Consensus       210 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  289 (503)
                      +++++.+....  .+..+++|+.|++++|.+. ..+ .+ .+++|+.|++++|......  .+..+++|+.|++++|.+.
T Consensus       291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred             EecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence            88888775532  6778899999999999994 344 45 8999999999998544333  4668899999999999876


Q ss_pred             hhH--HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHH
Q 010711          290 DEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLA  366 (503)
Q Consensus       290 ~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~  366 (503)
                      ...  +..+..+++|++|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+.
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             CCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            542  567889999999999999876643 567889999999999998776554 5677899999999999999887778


Q ss_pred             hhcCCCCCCEEEccCCccChH-HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711          367 ALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  445 (503)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~  445 (503)
                      .+..+++|+.|++++|.+... .+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+.+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCC
Confidence            888999999999999998873 4667889999999999999999988888999999999999999 89988888999999


Q ss_pred             CCcEEecccCccchhhHhhccCCc-ccceEEeccCCCCH
Q 010711          446 GLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA  483 (503)
Q Consensus       446 ~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~  483 (503)
                      +|+.|++++|+++.++ ..+..++ +|++|++++|++.-
T Consensus       522 ~L~~L~l~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          522 SLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCCEEECTTSCCCCEE-SCGGGSCTTCCEEECCSCCCCC
T ss_pred             cCCEEECCCCcCcccC-HhHhhhcccCcEEEccCCCccc
Confidence            9999999999999754 4477787 69999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-39  Score=322.55  Aligned_cols=415  Identities=20%  Similarity=0.186  Sum_probs=294.3

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .+++++|+++++.+++..+..|.++++|++|++++| .+....+..|..+++|++|++++|. +....+..++++++|++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            367888999988888776777888899999999887 6666666778888899999998886 45666777888889999


Q ss_pred             EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711          136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (503)
Q Consensus       136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  214 (503)
                      |++++|.... ..+..+.++++|++|++++|..........+..+++|++|+++++.+....+..+..+++|+.|+++++
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            9998865433 335667888889999988876555555567788888888888888888777777888888888888888


Q ss_pred             CCcHHHHHHhhCCCCCCEEEccCCCCChhh---hHhhhcCCCCCEEEccCCCCChHHHHHh-------------------
Q 010711          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITDECLVHL-------------------  272 (503)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------------  272 (503)
                      .+.......+..+++|++|++++|.+....   ......+++|+.|+++++.+.+..+..+                   
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            766544334456788888888887766421   0111234455555555554443222211                   


Q ss_pred             --------------------------------------------hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecC
Q 010711          273 --------------------------------------------KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  308 (503)
Q Consensus       273 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  308 (503)
                                                                  ...++|+.|++++|.+...+...+..+++|++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                                                        112455666666665554444444567778888888


Q ss_pred             CCccChhhHH---HhhCCCCCCeeeccCCCCChHHH--HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCc
Q 010711          309 DTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  383 (503)
Q Consensus       309 ~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (503)
                      +|.+.+..+.   .+..+++|+.|++++|.++....  ..+..+++|++|++++|.++.. +..+..+++|+.|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence            7777665432   25667778888888887776543  4566778888888888777742 3445567778888888877


Q ss_pred             cChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711          384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  463 (503)
Q Consensus       384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  463 (503)
                      +...+..   ..++|+.|++++|.+++.    +..+++|+.|++++| +++.++.  ...+++|+.|++++|+++...+.
T Consensus       422 l~~l~~~---~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~  491 (549)
T 2z81_A          422 IRVVKTC---IPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRN-KLKTLPD--ASLFPVLLVMKISRNQLKSVPDG  491 (549)
T ss_dssp             CSCCCTT---SCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSS-CCSSCCC--GGGCTTCCEEECCSSCCCCCCTT
T ss_pred             cccccch---hcCCceEEECCCCChhhh----cccCChhcEEECCCC-ccCcCCC--cccCccCCEEecCCCccCCcCHH
Confidence            6643211   135788888888877763    246789999999999 7775443  45688999999999999988777


Q ss_pred             hccCCcccceEEeccCCCCH
Q 010711          464 HLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       464 ~l~~~~~L~~L~l~~~~~~~  483 (503)
                      .+..+++|+.|++++|+++.
T Consensus       492 ~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          492 IFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             GGGGCTTCCEEECCSSCBCC
T ss_pred             HHhcCcccCEEEecCCCccC
Confidence            88889999999999998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=344.13  Aligned_cols=419  Identities=23%  Similarity=0.243  Sum_probs=271.4

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .++++.|+++++.+++..+..|.++++|++|++++| .+....+.+|+++++|++|++++|. +....+..|.++++|++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence            456888888888887766667888888888888887 5666666778888888888888886 44555677888888888


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC----CEEEc
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL  211 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l  211 (503)
                      |++++|.........++++++|++|++++|.......+..+.++++|++|+++++.+....+..+..+++|    ..+++
T Consensus       105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            88888643333333577888888888887653332345677788888888888887776655566665555    67777


Q ss_pred             CCCCCcHHHHHHhhCCCCCCEEEccCCCC---------------------------------------------------
Q 010711          212 EGCPVTAACLDSLSALGSLFYLNLNRCQL---------------------------------------------------  240 (503)
Q Consensus       212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---------------------------------------------------  240 (503)
                      ++|.+....+..+... +|+.+++.++..                                                   
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            7776544322222222 344443333210                                                   


Q ss_pred             -------ChhhhHhhhcCCCCCEEEccCCCCChHHHHHhh--------------------CCCCCCEEEccCCCCChhHH
Q 010711          241 -------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK--------------------GLTNLESLNLDSCGIGDEGL  293 (503)
Q Consensus       241 -------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------------------~~~~L~~L~l~~~~~~~~~~  293 (503)
                             ....+..+..+++|+.++++++.+.. .+..+.                    .+++|+.|++.++.+....+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence                   01111223334455555555444331 222222                    34445555555443322211


Q ss_pred             HHHhcCCCCCEEecCCCccChhh--HHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH-HhhcC
Q 010711          294 VNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTS  370 (503)
Q Consensus       294 ~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  370 (503)
                      .  ..+++|++|++++|.+....  ...+..+++|+.|++++|.+...... +..+++|++|++++|.+....+ ..+..
T Consensus       343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence            1  35667777777777665432  34556677777777777766543333 5667777777777776665433 34567


Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCC-hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcE
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  449 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~  449 (503)
                      +++|+.|++++|.+....+..+..+++|++|++++|.+. +..+..+..+++|+.|++++| .++...+..+.++++|+.
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCE
Confidence            777888888777776666666777778888888877775 344556677778888888887 677766677777788888


Q ss_pred             EecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          450 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       450 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      |++++|+++..++..+..+++|+.|++++|+++
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            888888777776667777788888888887665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-41  Score=350.35  Aligned_cols=419  Identities=22%  Similarity=0.213  Sum_probs=241.2

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      ..+++++|+++++.+++..+..|+++++|++|++++|.......+.+|+++++|++|++++|. +....|.+|.++++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence            367899999999999877778899999999999999855555557788999999999999986 4566688899999999


Q ss_pred             EEeccCcccccCccc--cccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC--CC-----
Q 010711          135 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QK-----  205 (503)
Q Consensus       135 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~-----  205 (503)
                      +|++++|......+.  .+.++++|++|++++|..........+.++++|++|+++++.+....+..+..+  ++     
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            999999754443443  388899999999998765443334578889999999999887765444444333  34     


Q ss_pred             -------------------------CCEEEcCCCCCcHHHHHHh------------------------------------
Q 010711          206 -------------------------LTLLNLEGCPVTAACLDSL------------------------------------  224 (503)
Q Consensus       206 -------------------------L~~L~l~~~~~~~~~~~~l------------------------------------  224 (503)
                                               |+.|++++|.+....+..+                                    
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence                                     4555555543321111111                                    


Q ss_pred             hC--CCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCC
Q 010711          225 SA--LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL  302 (503)
Q Consensus       225 ~~--l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  302 (503)
                      .+  .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence            11  1345555555555554444455555666666666665554444445555666666666665554444455555666


Q ss_pred             CEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH------------------
Q 010711          303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG------------------  364 (503)
Q Consensus       303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------  364 (503)
                      +.|++++|.+.......+..+++|+.|++++|.++.     +..+++|+.+.+++|.++...                  
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~  415 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN  415 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCS
T ss_pred             CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcccccccccccceeecccCcccc
Confidence            666666665554444445555666666666655442     112344444444444333210                  


Q ss_pred             ---HHhhcCCCCCCEEEccCCccChHHHH-HHhcCCCCCeEEecCCCCCh-----hHHHhhhcCCCCceeeccCCCCCCh
Q 010711          365 ---LAALTSLTGLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTD-----AGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       365 ---~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                         ...+..+++|+.|++++|.+...... .+..+++|+.|++++|.+..     ..+..+..+++|+.|++++| .++.
T Consensus       416 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~  494 (844)
T 3j0a_A          416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS  494 (844)
T ss_dssp             STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTT
T ss_pred             CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccc
Confidence               11122344444444444433321110 11223344444444443321     11122344455555555555 4555


Q ss_pred             hhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       436 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ..+..+.++++|+.|++++|+++..++..+.  ++|+.|++++|.++
T Consensus       495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~  539 (844)
T 3j0a_A          495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL  539 (844)
T ss_dssp             CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred             cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence            4444455555555555555555554433332  44555555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=332.41  Aligned_cols=415  Identities=20%  Similarity=0.190  Sum_probs=301.1

Q ss_pred             ceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEE
Q 010711           32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL  111 (503)
Q Consensus        32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  111 (503)
                      .++.+.+..+. +..... .....+++|++|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|
T Consensus        29 ~l~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           29 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCCEEECCSCC-CCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred             cccEEEccCCc-cCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence            35666665442 211111 12235788888888888888766677888888888888886 5666666778888888888


Q ss_pred             EcCCCccccHHHHHHHhCCCCCcEEeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC----CEEE
Q 010711          112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQ  186 (503)
Q Consensus       112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~  186 (503)
                      ++++|. +....+..++++++|++|++++|.... ..+..+.++++|++|++++|. +....+..+..+++|    +.++
T Consensus       106 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             ECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEE
T ss_pred             cccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcc
Confidence            888876 333333357788888888888865433 346778888888888888754 333333444444444    4555


Q ss_pred             eecccCCchhH---------------------------------------------------------------------
Q 010711          187 ISCSKVTDSGI---------------------------------------------------------------------  197 (503)
Q Consensus       187 l~~~~~~~~~~---------------------------------------------------------------------  197 (503)
                      ++++.+....+                                                                     
T Consensus       184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            54444332222                                                                     


Q ss_pred             ------------HhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711          198 ------------AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (503)
Q Consensus       198 ------------~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  265 (503)
                                  ..+..+++|+.|+++++.+.. .+..+..+ +|++|++++|.+... +.  ..+++|+.++++++...
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~  338 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGG  338 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCccc
Confidence                        223344566666666665443 23334444 667777766666522 11  35678888888877655


Q ss_pred             hHHHHHhhCCCCCCEEEccCCCCChhH--HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH-H
Q 010711          266 DECLVHLKGLTNLESLNLDSCGIGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-R  342 (503)
Q Consensus       266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~  342 (503)
                      ...+.  ..+++|+.|++++|.+....  +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ .
T Consensus       339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            43222  57899999999999887543  56778899999999999987765444 7889999999999997765433 3


Q ss_pred             HHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711          343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  421 (503)
Q Consensus       343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  421 (503)
                      .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            56789999999999999988777788899999999999998873 34567788999999999999999988888999999


Q ss_pred             CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       422 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      |+.|++++| .++..++..+.++++|+.|++++|++...
T Consensus       496 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          496 LQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            999999999 88888888899999999999999987753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.3e-38  Score=313.62  Aligned_cols=429  Identities=20%  Similarity=0.150  Sum_probs=283.0

Q ss_pred             eeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEec
Q 010711           59 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL  138 (503)
Q Consensus        59 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  138 (503)
                      ....+.+++.++ ..|..+  .++|++|++++| .+....+..|..+++|++|++++|. +....+.+|.++++|++|++
T Consensus         7 ~~~c~~~~~~l~-~ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCccc-cccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEEC
Confidence            334566666665 334433  379999999997 5776667789999999999999997 56666788999999999999


Q ss_pred             cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCchhHHhhhcCCCCCEEEcCCCCCc
Q 010711          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVT  217 (503)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~  217 (503)
                      ++|......+..++++++|++|++++|.......+..+..+++|++|+++++. +.......+..+++|+.|++++|.+.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            99765444455689999999999999764432345678899999999999987 45444467899999999999999988


Q ss_pred             HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH---HHHhhCCCCCCEEEccCCCCChhHHH
Q 010711          218 AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEGLV  294 (503)
Q Consensus       218 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~  294 (503)
                      ...+..+..+++|++|+++.+.+.......+..+++|+.|++++|.+.+..   ......+++|+.|++.++.+.+..+.
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            776778889999999999999887654444567899999999999877531   11223568899999998877665544


Q ss_pred             HH----hcCCCCCEEecCCCccChhh-----------------------------------HHHhhCCCCCCeeeccCCC
Q 010711          295 NL----TGLCNLKCLELSDTQVGSSG-----------------------------------LRHLSGLTNLESINLSFTG  335 (503)
Q Consensus       295 ~l----~~~~~L~~L~l~~~~~~~~~-----------------------------------~~~~~~~~~L~~L~l~~~~  335 (503)
                      .+    ..+++|+.+++.++.+....                                   .......++|+.+++++|.
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence            43    23445555555444321100                                   0001112344455555444


Q ss_pred             CChHHHHHHhCCCCCCEeecCCCCCCHhHHHh---hcCCCCCCEEEccCCccChHHH--HHHhcCCCCCeEEecCCCCCh
Q 010711          336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAA---LTSLTGLTHLDLFGARITDSGA--AYLRNFKNLRSLEICGGGLTD  410 (503)
Q Consensus       336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  410 (503)
                      +.......+..+++|++|++++|.+++..+..   ++.+++|+.|++++|.++..+.  ..+..+++|++|++++|.++.
T Consensus       322 l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  401 (549)
T 2z81_A          322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP  401 (549)
T ss_dssp             CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC
T ss_pred             cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc
Confidence            44322222234555555555555555433221   3344555555555555544332  234455555555555555443


Q ss_pred             hHHHhhhcCC---------------------CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc
Q 010711          411 AGVKHIKDLS---------------------SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK  469 (503)
Q Consensus       411 ~~~~~~~~~~---------------------~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~  469 (503)
                       .+..+..++                     +|+.|++++| .++..    ...+++|+.|++++|+++.++.  ...++
T Consensus       402 -lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N~l~~ip~--~~~l~  473 (549)
T 2z81_A          402 -MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRNKLKTLPD--ASLFP  473 (549)
T ss_dssp             -CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSSCCSSCCC--GGGCT
T ss_pred             -CChhhcccccccEEECCCCCcccccchhcCCceEEECCCC-Chhhh----cccCChhcEEECCCCccCcCCC--cccCc
Confidence             222333334                     4555555555 44442    2467888999999988886533  35688


Q ss_pred             ccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          470 NLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       470 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      +|+.|++++|.++......+.  .+++|+.+++
T Consensus       474 ~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l  504 (549)
T 2z81_A          474 VLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL  504 (549)
T ss_dssp             TCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred             cCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence            899999999988865544454  7788887765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=307.30  Aligned_cols=410  Identities=15%  Similarity=0.126  Sum_probs=301.8

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (503)
                      ++++.|+++++.+++..+..|.++++|++|++++| .+....+..|+.+++|++|++++|.. . .+|..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-V-KISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-C-EEECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-e-ecCcc--ccCCccEE
Confidence            67888888888888766677888888888888886 56666677888888888888888863 3 23433  78888888


Q ss_pred             eccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC--CEEEeecccC--CchhHHhhhc---------
Q 010711          137 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG---------  202 (503)
Q Consensus       137 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~---------  202 (503)
                      ++++|.... ..+..++++++|++|+++++. +..   ..+..+++|  ++|+++++.+  ....+..+..         
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            888865443 345678888888888888755 332   345556666  8888888776  3333333333         


Q ss_pred             -----------------CCCCCEEEcCCCC-------CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhh---cCCCCC
Q 010711          203 -----------------LQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK  255 (503)
Q Consensus       203 -----------------~~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~  255 (503)
                                       +++|+.+++++|.       +.... ..+..+++|+.|++.++.+.......+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                             5566666666654       33322 3566777888888877766553332221   245788


Q ss_pred             EEEccCCCCChHHHHHh-----hCCCCCCEEEccCCCCChhHHHHHh---cCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711          256 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLT---GLCNLKCLELSDTQVGSSGLRHLSGLTNLE  327 (503)
Q Consensus       256 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  327 (503)
                      .|++++|.+.+..+..+     ..+++|+.++++++.+ ..+...+.   ...+|+.|+++++.+....  ....+++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            88888776664444444     6677777888877765 22212222   2367899999888775532  125789999


Q ss_pred             eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH--hHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEec
Q 010711          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD--TGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~  404 (503)
                      .|++++|.+++..+..+..+++|++|++++|.+++  ..+..+..+++|+.|++++|.+.. .+...+..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            99999999988667778899999999999999997  344678899999999999999987 544457788999999999


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      +|.+++..+..+.  ++|+.|++++| .++. .+..+..+++|+.|++++|+++.++...+..+++|++|++++|+++-
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSN-KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSS-CCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCC-cccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9999876655543  79999999999 7885 44455599999999999999998766668889999999999998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.9e-39  Score=323.37  Aligned_cols=417  Identities=18%  Similarity=0.181  Sum_probs=328.9

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCee------cC------hh--------------------hHHHh--
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ------IS------DG--------------------GLEHL--  102 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~------~~--------------------~~~~~--  102 (503)
                      .+++.|+++++++.+..+..++++++|++|++++|..      +.      ..                    .+..+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            6899999999999999999999999999999999732      00      00                    00000  


Q ss_pred             -----------------hCCCCCCEEEcCC-CccccHHHHHHHhCCCCCcEEeccCcccccC------------------
Q 010711          103 -----------------RGLSNLTSLSFRR-NNAITAQGMKAFAGLINLVKLDLERCTRIHG------------------  146 (503)
Q Consensus       103 -----------------~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------  146 (503)
                                       .....++.+.+.. +..+++ +|..++++++|++|++++|. +..                  
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence                             0111233333332 223455 78889999999999999976 544                  


Q ss_pred             cccccc--CCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCc-hhHHhhhcC------CCCCEEEcCCCCC
Q 010711          147 GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL------QKLTLLNLEGCPV  216 (503)
Q Consensus       147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~  216 (503)
                      .|..+.  ++++|++|++++|. +....+..+.++++|++|+++++. +++ ..+..+..+      ++|+.|++++|.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            788888  99999999999965 444566889999999999999998 887 677777665      9999999999998


Q ss_pred             cHHHHH--HhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCC-CCEEEccCCCCChhHH
Q 010711          217 TAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGDEGL  293 (503)
Q Consensus       217 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~  293 (503)
                      . ..+.  .+..+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .+
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp  393 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IP  393 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CC
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cc
Confidence            8 4455  78999999999999999985566 7888899999999999877 55556778888 9999999998873 34


Q ss_pred             HHHhcC--CCCCEEecCCCccChhhHHHhh-------CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711          294 VNLTGL--CNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  364 (503)
Q Consensus       294 ~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  364 (503)
                      ..+...  ++|++|++++|.+....+..+.       .+++|+.|++++|.++......+..+++|++|++++|.++..+
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence            444443  4899999999998876666666       6779999999999988765566778999999999999998544


Q ss_pred             HHhhcCC-------CCCCEEEccCCccChHHHHHHh--cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC----
Q 010711          365 LAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC----  431 (503)
Q Consensus       365 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----  431 (503)
                      ...+...       ++|+.|++++|.++.. +..+.  .+++|+.|++++|.+++ .+..+..+++|+.|++++|.    
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             HHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            3334333       3999999999999855 44554  89999999999999988 56778889999999995431    


Q ss_pred             -CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711          432 -NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND  485 (503)
Q Consensus       432 -~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  485 (503)
                       .+....+..+.++++|+.|++++|.+..+ |..+.  ++|+.|++++|+++...
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcCCcc-CHhHh--CcCCEEECcCCCCcccc
Confidence             56666778899999999999999999665 44433  89999999999877543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=335.38  Aligned_cols=420  Identities=20%  Similarity=0.160  Sum_probs=271.5

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHH--HhhCCCCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLE--HLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN  132 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  132 (503)
                      .+++|+.|+++++.+.+..+..|.++++|++|++++| .+....+.  .++.+++|++|++++|.......+..|+++++
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            4555666666666665555555666666666666655 33322122  25556666666666654322112234556666


Q ss_pred             CcEEeccCcccccCccccccCC--ccccEeeccCCcCCCccccccccCCCC------CCEEEeecccCCchhHHhh----
Q 010711          133 LVKLDLERCTRIHGGLVNLKGL--MKLESLNIKWCNCITDSDMKPLSGLTN------LKSLQISCSKVTDSGIAYL----  200 (503)
Q Consensus       133 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~l----  200 (503)
                      |++|++++|......+..+..+  ++|+.|++++|. +....+..+..+++      |+.|+++++.+....+..+    
T Consensus       150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  228 (844)
T 3j0a_A          150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI  228 (844)
T ss_dssp             CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred             CCEEECCCCcCCeeCHHHcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence            6666666543333233333333  444444444432 12122222222222      7777776664432222111    


Q ss_pred             --------------------------------hc--CCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhH
Q 010711          201 --------------------------------KG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCE  246 (503)
Q Consensus       201 --------------------------------~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  246 (503)
                                                      ..  .++|+.|++++|.+....+..+..+++|+.|++++|.+....+.
T Consensus       229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence                                            11  25678888888877665555667778888888888888776667


Q ss_pred             hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH---------
Q 010711          247 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL---------  317 (503)
Q Consensus       247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---------  317 (503)
                      .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.....         
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l  388 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL  388 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEE
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhcc
Confidence            77778888888888887765555566777888888888887766555566677788888887776553211         


Q ss_pred             -----HH-hhCCCCCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChH--
Q 010711          318 -----RH-LSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDS--  387 (503)
Q Consensus       318 -----~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--  387 (503)
                           .. -....+++.+++++|.+... ....+..+++|++|++++|.++..... .+..+++|+.|++++|.+...  
T Consensus       389 ~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             ESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             CCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence                 00 00123445555555555432 233456899999999999998864332 345689999999999988632  


Q ss_pred             ---HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhh
Q 010711          388 ---GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH  464 (503)
Q Consensus       388 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  464 (503)
                         .+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .++..++..+.  ++|+.|++++|.++...+..
T Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred             cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence               2345678899999999999999888888899999999999999 88876665554  89999999999999877754


Q ss_pred             ccCCcccceEEeccCCCC
Q 010711          465 LKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       465 l~~~~~L~~L~l~~~~~~  482 (503)
                         +++|+.|++++|++.
T Consensus       546 ---~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          546 ---FVSLSVLDITHNKFI  560 (844)
T ss_dssp             ---CSSCCEEEEEEECCC
T ss_pred             ---hCCcCEEEecCCCcc
Confidence               458999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.4e-38  Score=322.31  Aligned_cols=414  Identities=17%  Similarity=0.179  Sum_probs=319.2

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEec-CCCeecChh--------------------------------------
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDF-NFCIQISDG--------------------------------------   97 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~--------------------------------------   97 (503)
                      .+++.|+|+++++.+..+..++++++|++|+| ++| .+...                                      
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            67999999999999999999999999999999 544 32111                                      


Q ss_pred             --hHHHhh-----------CCCCCCEEEcCC--CccccHHHHHHHhCCCCCcEEeccCcccccC----------------
Q 010711           98 --GLEHLR-----------GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLERCTRIHG----------------  146 (503)
Q Consensus        98 --~~~~~~-----------~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------  146 (503)
                        ....+.           ...+++.+.+..  |. +.+ +|..++++++|++|++++|. +..                
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccc
Confidence              011111           112233333333  33 444 68889999999999999976 444                


Q ss_pred             --cccccc--CCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc-CCc-hhHHhhhcC-------CCCCEEEcCC
Q 010711          147 --GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIAYLKGL-------QKLTLLNLEG  213 (503)
Q Consensus       147 --~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~-------~~L~~L~l~~  213 (503)
                        .|..++  ++++|++|++++|.. ....+..+..+++|+.|+++++. +++ ..+..+..+       ++|+.|++++
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             ccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence              677777  999999999998653 44566889999999999999997 876 566655554       4999999999


Q ss_pred             CCCcHHHHH--HhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCC-CCEEEccCCCCCh
Q 010711          214 CPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTN-LESLNLDSCGIGD  290 (503)
Q Consensus       214 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~  290 (503)
                      |.+. ..+.  .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+..
T Consensus       558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~  633 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY  633 (876)
T ss_dssp             SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS
T ss_pred             CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc
Confidence            9988 4455  7899999999999999998 445 7888999999999999888 55666777888 9999999998873


Q ss_pred             hHHHHHhcCC--CCCEEecCCCccChhhHH---Hhh--CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHh
Q 010711          291 EGLVNLTGLC--NLKCLELSDTQVGSSGLR---HLS--GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT  363 (503)
Q Consensus       291 ~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  363 (503)
                       .+..+...+  +|+.|++++|.+....+.   .+.  .+++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus       634 -lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i  712 (876)
T 4ecn_A          634 -IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI  712 (876)
T ss_dssp             -CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred             -CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence             344444443  499999999988664321   112  345899999999998866556667899999999999998854


Q ss_pred             HHHhhcC-------CCCCCEEEccCCccChHHHHHHh--cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC---
Q 010711          364 GLAALTS-------LTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC---  431 (503)
Q Consensus       364 ~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---  431 (503)
                      +...+..       +++|+.|++++|.+... +..+.  .+++|+.|++++|.+++ .+..+..+++|+.|++++|.   
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence            4333332       23899999999999854 44554  89999999999999988 46678889999999998732   


Q ss_pred             --CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711          432 --NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND  485 (503)
Q Consensus       432 --~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  485 (503)
                        .+....|..+.++++|+.|+|++|.+..+ |..+.  ++|+.|+|++|++....
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCEEE
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCccC
Confidence              56666778899999999999999999655 44433  69999999999886543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.1e-37  Score=307.44  Aligned_cols=408  Identities=16%  Similarity=0.182  Sum_probs=320.7

Q ss_pred             CCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCcc------ccH-----HHH-------------------------
Q 010711           81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------ITA-----QGM-------------------------  124 (503)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~-----~~~-------------------------  124 (503)
                      .+++.|+|+++ .+....+..++++++|++|++++|..      ...     ..|                         
T Consensus        81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            57999999997 56666678899999999999999853      000     000                         


Q ss_pred             ----HHH-----------hCCCCCcEEeccC-cccccCccccccCCccccEeeccCCcCCCcc-----------------
Q 010711          125 ----KAF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS-----------------  171 (503)
Q Consensus       125 ----~~~-----------~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------  171 (503)
                          ..+           .....++.+.+.. +..+...|..++++++|++|++++|. +...                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence                000           0011222222222 22444577889999999999999976 5553                 


Q ss_pred             cccccc--CCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC-CcH-HHHHHhhCC------CCCCEEEccCCCCC
Q 010711          172 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLS  241 (503)
Q Consensus       172 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~  241 (503)
                      .+..++  ++++|++|+++++.+....+..+.++++|+.|++++|. +.. ..+..+..+      ++|++|++++|.+.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            667777  99999999999999888888889999999999999998 887 677777765      99999999999998


Q ss_pred             hhhhH--hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCC-CCEEecCCCccChhhHH
Q 010711          242 DDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR  318 (503)
Q Consensus       242 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~  318 (503)
                       ..+.  .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+.. .+.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch
Confidence             5666  88999999999999999885555 7788899999999999776 44456778888 9999999999874 344


Q ss_pred             HhhCC--CCCCeeeccCCCCChHHHHHHh-------CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711          319 HLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  389 (503)
Q Consensus       319 ~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (503)
                      .+...  ++|+.|++++|.+....+..+.       .+++|++|++++|.++..+...+..+++|+.|++++|.+...+.
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            44443  4899999999999876666666       67899999999999997666677789999999999999986554


Q ss_pred             HHHhcC-------CCCCeEEecCCCCChhHHHhhh--cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc------c
Q 010711          390 AYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------N  454 (503)
Q Consensus       390 ~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~------~  454 (503)
                      ..+...       ++|+.|++++|.++. .+..+.  .+++|+.|++++| .++. .|..+.++++|+.|+++      +
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             HHhccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            444333       299999999999995 445555  8999999999999 7887 56678899999999994      5


Q ss_pred             CccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       455 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      |.+....|..+..+++|++|++++|.++...     ..-.++|+.|++
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip-----~~~~~~L~~L~L  594 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVN-----EKITPNISVLDI  594 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCBCC-----SCCCTTCCEEEC
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcCCccC-----HhHhCcCCEEEC
Confidence            6777777888899999999999999985432     123367777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-36  Score=307.52  Aligned_cols=406  Identities=16%  Similarity=0.145  Sum_probs=312.2

Q ss_pred             CCCCEEecCCCeecChhhHHHhhCCCCCCEEEc-CCCccccHH-------------------------------------
Q 010711           81 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ-------------------------------------  122 (503)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-------------------------------------  122 (503)
                      .++..|+|+++ .+....+..++++++|++|++ ++|. +.+.                                     
T Consensus       323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccC-CCCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            57999999997 666666788999999999999 5553 2111                                     


Q ss_pred             ---HHHHHh-----------CCCCCcEEeccC-cccccCccccccCCccccEeeccCCcCCCc-----------------
Q 010711          123 ---GMKAFA-----------GLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD-----------------  170 (503)
Q Consensus       123 ---~~~~~~-----------~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------  170 (503)
                         .+..+.           ....++.+.+.. +..+...|..+.++++|++|++++|. +..                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccc
Confidence               111111           111222222322 12333467789999999999999966 444                 


Q ss_pred             ccccccc--CCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC-CcH-HHHHHhhCC-------CCCCEEEccCCC
Q 010711          171 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL-------GSLFYLNLNRCQ  239 (503)
Q Consensus       171 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~  239 (503)
                      ..+..++  .+++|++|++++|.+....+..+.++++|+.|++++|. +.. ..|..+..+       ++|+.|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            2566766  99999999999998888888889999999999999998 876 667666554       499999999999


Q ss_pred             CChhhhH--hhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCC-CCEEecCCCccChhh
Q 010711          240 LSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG  316 (503)
Q Consensus       240 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~  316 (503)
                      +. ..+.  .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.. .
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C
Confidence            98 5666  8999999999999999888 444 7788999999999999887 44556778888 9999999998873 3


Q ss_pred             HHHhhCCC--CCCeeeccCCCCChHHHH---HHh--CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711          317 LRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  389 (503)
Q Consensus       317 ~~~~~~~~--~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (503)
                      +..+...+  +|+.|++++|.+....+.   .+.  .+++|+.|++++|.++..+...+..+++|+.|++++|.+...+.
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            34444443  499999999988753321   111  34589999999999997766667789999999999999886544


Q ss_pred             HHHh-------cCCCCCeEEecCCCCChhHHHhhh--cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc------
Q 010711          390 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------  454 (503)
Q Consensus       390 ~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~------  454 (503)
                      ..+.       ++++|+.|++++|.++. .+..+.  .+++|+.|++++| .++. .+..+.++++|+.|+|++      
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~  791 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG  791 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred             HHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence            4333       23489999999999985 455665  8999999999999 7887 466788999999999976      


Q ss_pred             CccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          455 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       455 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      |.+....|..+..+++|+.|++++|.++..     ...-.++|+.|++
T Consensus       792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I-----p~~l~~~L~~LdL  834 (876)
T 4ecn_A          792 NRILRQWPTGITTCPSLIQLQIGSNDIRKV-----DEKLTPQLYILDI  834 (876)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCSSSCEEEC
T ss_pred             ccccccChHHHhcCCCCCEEECCCCCCCcc-----CHhhcCCCCEEEC
Confidence            677777788889999999999999998432     2123467777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-35  Score=288.01  Aligned_cols=361  Identities=17%  Similarity=0.203  Sum_probs=263.8

Q ss_pred             CCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccC-ccccccCCccccEeeccCCcCCCccccccccCCCCCCE
Q 010711          106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS  184 (503)
Q Consensus       106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  184 (503)
                      ++|++|++++|. +....|..+.++++|++|++++|..... .+..+.++++|++|++++|. +....+..+..+++|++
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence            689999999986 4566677888999999999998754323 34568888999999998855 55556677888899999


Q ss_pred             EEeecccCCchhHHh--hhcCCCCCEEEcCCCCCcHHHHHH-hhCCCCCCEEEccCCCCChhhhHhhhcC--CCCCEEEc
Q 010711          185 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL  259 (503)
Q Consensus       185 L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l  259 (503)
                      |+++++.+.+..+..  +..+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+  .+++.+++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            999988887655554  788889999999998877654444 6788899999999888877666666554  67888888


Q ss_pred             cCCCCChHHHH--------HhhCCCCCCEEEccCCCCChhHHHHHhcC---CCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711          260 GFNEITDECLV--------HLKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (503)
Q Consensus       260 ~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (503)
                      +++.+......        .+..+++|+.|++++|.+.+..+..+...   ++++.++++++........ ...++.+. 
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~-  265 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPD-  265 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCC-
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCc-
Confidence            88776542221        12345678888888888877666665443   6788888877654322100 00001000 


Q ss_pred             eeccCCCCChHHHHHHh--CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCC
Q 010711          329 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG  406 (503)
Q Consensus       329 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  406 (503)
                                  ...+.  ..++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus       266 ------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          266 ------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             ------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence                        00111  2467888888888887766677778888888888888887776777777888888888888


Q ss_pred             CCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711          407 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       407 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      .+++..+..+..+++|+.|++++| .++...+..+.++++|+.|++++|+++..++..+..+++|++|++++|+++.
T Consensus       334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            887776777788888888888888 7777777778888888888888888888766677788888888888887654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1e-33  Score=275.09  Aligned_cols=395  Identities=24%  Similarity=0.276  Sum_probs=265.9

Q ss_pred             CCCCEEecCCCeecChhhHHH-hhCCCCCCEEEcCCCccccH----HHHHHHhCCCCCcEEeccCcccccCccccc-cCC
Q 010711           81 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL  154 (503)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l  154 (503)
                      ++|++|+++++ .+....... +..+++|++|++++|. +..    .++..+..+++|++|++++|......+..+ ..+
T Consensus         3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            56788888876 565554444 6778888888888886 343    345667777888888887754322222221 112


Q ss_pred             ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCc----hhHHhhhcCCCCCEEEcCCCCCcHHHHHHhh-----
Q 010711          155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS-----  225 (503)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----  225 (503)
                      +.                     ..++|++|+++++.+..    ..+..+..+++|+.|++++|.+.......+.     
T Consensus        81 ~~---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           81 QT---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  139 (461)
T ss_dssp             CS---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             hh---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence            20                     00135555555554442    2244455566666666666665443333222     


Q ss_pred             CCCCCCEEEccCCCCChhh----hHhhhcCCCCCEEEccCCCCChHHHHHhh-----CCCCCCEEEccCCCCChh----H
Q 010711          226 ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDE----G  292 (503)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~  292 (503)
                      ..++|++|++++|.+....    +..+..+++|+.|++++|.+.+.....+.     ..++|+.|++++|.++..    .
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            2346777777777666533    34445567777777777776654443332     356788888888877654    3


Q ss_pred             HHHHhcCCCCCEEecCCCccChhhHHH-----hhCCCCCCeeeccCCCCChHH----HHHHhCCCCCCEeecCCCCCCHh
Q 010711          293 LVNLTGLCNLKCLELSDTQVGSSGLRH-----LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDT  363 (503)
Q Consensus       293 ~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~  363 (503)
                      +..+..+++|++|++++|.+.+.....     +..+++|+.|++++|.++...    +..+..+++|++|++++|.+.+.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            455667788888888888776654322     235788999999999888753    44566689999999999988876


Q ss_pred             HHHhhc-----CCCCCCEEEccCCccChH----HHHHHhcCCCCCeEEecCCCCChhHHHhhhc-----CCCCceeeccC
Q 010711          364 GLAALT-----SLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLLNLSQ  429 (503)
Q Consensus       364 ~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~  429 (503)
                      ++..+.     ..++|+.|++++|.++..    .+..+..+++|++|++++|.+++.++..+..     .++|+.|++++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence            655443     337999999999988865    3556678899999999999998877665543     67999999999


Q ss_pred             CCCCCh----hhHHHHhcCCCCcEEecccCccchhhHhhcc-----CCcccceEEeccCCCCHH---HHHHHHhcCCCCc
Q 010711          430 NCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTAN---DIKRLQSRDLPNL  497 (503)
Q Consensus       430 ~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L  497 (503)
                      | .++.    ..+..+..+++|++|++++|+++..+...+.     ..++|+.|.+.++.+...   .++.+. ...|+|
T Consensus       380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~~p~l  457 (461)
T 1z7x_W          380 C-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KDKPSL  457 (461)
T ss_dssp             S-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HHCTTS
T ss_pred             C-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-ccCCCc
Confidence            9 8886    5667788899999999999999987654442     245789999988877654   344444 567887


Q ss_pred             ccc
Q 010711          498 VSF  500 (503)
Q Consensus       498 ~~l  500 (503)
                      +.+
T Consensus       458 ~i~  460 (461)
T 1z7x_W          458 RVI  460 (461)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=288.25  Aligned_cols=422  Identities=18%  Similarity=0.132  Sum_probs=303.7

Q ss_pred             eEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEecc
Q 010711           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (503)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (503)
                      +++++++++++ ..+..+.  ++|++|++++| .+....+..|..+++|++|++++|. +....|..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecC
Confidence            67999999998 4555554  89999999997 6777778899999999999999997 566668899999999999999


Q ss_pred             CcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC--CEEEcCCCCC-
Q 010711          140 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEGCPV-  216 (503)
Q Consensus       140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~-  216 (503)
                      +|. +...+..  .+++|++|++++|.......+..++.+++|++|+++++.+..   ..+..+++|  +.|++++|.+ 
T Consensus        78 ~N~-l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNK-LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSC-CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             CCc-eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            964 4455544  799999999999764443456789999999999999999886   346667777  9999999987 


Q ss_pred             -cHHHHHHhhC--------------------------CCCCCEEEccCCC-------CChhhhHhhhcCCCCCEEEccCC
Q 010711          217 -TAACLDSLSA--------------------------LGSLFYLNLNRCQ-------LSDDGCEKFSKIGSLKVLNLGFN  262 (503)
Q Consensus       217 -~~~~~~~l~~--------------------------l~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~  262 (503)
                       ....+..+..                          +++|+.+++++|.       +.... ..+..+++|+.|+++++
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhcccccc
Confidence             4333344443                          3444444444443       22111 24455566666666655


Q ss_pred             CCChHHHHHh---hCCCCCCEEEccCCCCChhHHHHH-----hcCCCCCEEecCCCccChhhHHHhhC---CCCCCeeec
Q 010711          263 EITDECLVHL---KGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQVGSSGLRHLSG---LTNLESINL  331 (503)
Q Consensus       263 ~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l  331 (503)
                      .+.+.....+   ...++|+.|++++|.+.+..+..+     ..+++|+.+++..+.+ ......+..   .++|+.|++
T Consensus       231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred             ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence            5543322211   113466666666665443333333     4555566666655554 111111111   156777777


Q ss_pred             cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH--HHHHHhcCCCCCeEEecCCCCC
Q 010711          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS--GAAYLRNFKNLRSLEICGGGLT  409 (503)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~  409 (503)
                      +++.+....  ....+++|++|++++|.+++..+..+..+++|+.|++++|.+...  .+..+..+++|+.|++++|.+.
T Consensus       310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS  387 (520)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred             CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence            777665421  125789999999999999987778888999999999999999973  4577899999999999999998


Q ss_pred             h-hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHH
Q 010711          410 D-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR  488 (503)
Q Consensus       410 ~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  488 (503)
                      + .....+..+++|+.|++++| .++...+..+.  ++|+.|++++|+++.+ +..+..+++|++|++++|+++......
T Consensus       388 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~  463 (520)
T 2z7x_B          388 YDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGI  463 (520)
T ss_dssp             CCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHH
Confidence            7 44445778899999999999 77765544332  7999999999999965 445559999999999999988543332


Q ss_pred             HHhcCCCCcccccC
Q 010711          489 LQSRDLPNLVSFRP  502 (503)
Q Consensus       489 ~~~~~~~~L~~l~~  502 (503)
                      +  ..+++|+.+.+
T Consensus       464 ~--~~l~~L~~L~l  475 (520)
T 2z7x_B          464 F--DRLTSLQKIWL  475 (520)
T ss_dssp             T--TTCTTCCEEEC
T ss_pred             h--ccCCcccEEEC
Confidence            4  37888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-35  Score=290.41  Aligned_cols=413  Identities=16%  Similarity=0.128  Sum_probs=276.6

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .++++.|+++++.+++..+..|.++++|++|++++| .+....+..|..+++|++|++++|.. . .+|..  .+++|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~  125 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRH  125 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCE
Confidence            367778888877777666667777788888888776 56666566777777888888877763 3 23333  6777888


Q ss_pred             EeccCccccc-CccccccCCccccEeeccCCcCCCccccccccCCCCC--CEEEeecccC--CchhHHhhhc--------
Q 010711          136 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG--------  202 (503)
Q Consensus       136 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~--------  202 (503)
                      |++++|.... ..+..++++++|++|+++++. +...   .+..+++|  ++|+++++.+  ....+..+..        
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l  201 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL  201 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence            8887765333 123567777788888877744 3322   23333444  7777777666  3333333322        


Q ss_pred             ------------------CCCCCEEEcCCCCCc----HHHHHHhhCCCCCCEEEccCCCCChhhhHhh---hcCCCCCEE
Q 010711          203 ------------------LQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVL  257 (503)
Q Consensus       203 ------------------~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L  257 (503)
                                        +++|+.++++++...    ......+..+++++.+++..+.+.......+   ...++|++|
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L  281 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL  281 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence                              334555555555311    1112345556666666666555543222111   123467777


Q ss_pred             EccCCCCChHHHHHh-----hCCCCCCEEEccCCCC--ChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeee
Q 010711          258 NLGFNEITDECLVHL-----KGLTNLESLNLDSCGI--GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN  330 (503)
Q Consensus       258 ~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  330 (503)
                      ++++|.+.+..+..+     ..++.|+.+++..+.+  .......+....++++|+++++.+....  ....+++|+.|+
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  359 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN  359 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence            777666554333322     3333344444444333  1111222223467899999888765432  125789999999


Q ss_pred             ccCCCCChHHHHHHhCCCCCCEeecCCCCCCHh--HHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCC
Q 010711          331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGG  407 (503)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~  407 (503)
                      +++|.++...+..+..+++|++|++++|.+++.  .+..+..+++|+.|++++|.+.. .+...+..+++|++|++++|.
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence            999999886777788899999999999999873  34668899999999999999887 444457788999999999999


Q ss_pred             CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH
Q 010711          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      +++..+..+.  ++|+.|++++| .++.++. .+.++++|+.|++++|+++.+++..+..+++|+.|++++|+++-
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSS-CCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCcchhhhhc--CcCCEEECCCC-cCcccCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            9875554433  79999999999 8886544 44489999999999999998766558899999999999998863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.5e-32  Score=263.57  Aligned_cols=381  Identities=22%  Similarity=0.269  Sum_probs=213.7

Q ss_pred             CCCeeEEEccCCCCChhhhhh-ccCCCCCCEEecCCCeecChh----hHHHhhCCCCCCEEEcCCCccccHHHHHHH-hC
Q 010711           56 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG  129 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~  129 (503)
                      .++++.|+++++.+++..+.. +..+++|++|++++| .+...    .+..+..+++|++|++++|. +.+..+..+ ..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~   79 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   79 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence            457899999999998776665 688999999999998 46543    24567788999999999987 455555444 34


Q ss_pred             CC----CCcEEeccCccccc----CccccccCCccccEeeccCCcCCCcccccccc-----CCCCCCEEEeecccCCchh
Q 010711          130 LI----NLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG  196 (503)
Q Consensus       130 l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~  196 (503)
                      ++    +|++|++++|....    ..+..+..+++|++|++++|. +....+..+.     ..++|++|+++++.++...
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            55    68999998875443    224566777788888887754 3332222222     2456777777777666533


Q ss_pred             ----HHhhhcCCCCCEEEcCCCCCcHHHHHHhh-----CCCCCCEEEccCCCCChh----hhHhhhcCCCCCEEEccCCC
Q 010711          197 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDD----GCEKFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       197 ----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~  263 (503)
                          ...+..+++|+.|++++|.+.......+.     ..++|++|++++|.+...    .+..+..+++|+.|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence                33445567777777777776554333332     245677777777766653    23444556666666666666


Q ss_pred             CChHHHHHh-----hCCCCCCEEEccCCCCChhH----HHHHhcCCCCCEEecCCCccChhhHHHhh-----CCCCCCee
Q 010711          264 ITDECLVHL-----KGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI  329 (503)
Q Consensus       264 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L  329 (503)
                      +.+.....+     ..+++|+.|++++|.++...    +..+..+++|++|++++|.+.+.....+.     ..++|+.|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            554332211     23566666666666665542    33334455566666655555443322221     11345555


Q ss_pred             eccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc-----CCCCCeEEec
Q 010711          330 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN-----FKNLRSLEIC  404 (503)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~  404 (503)
                      ++++|.++......                    .+..+..+++|+.|++++|.+.+..+..+..     .++|++|+++
T Consensus       319 ~L~~n~l~~~~~~~--------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  378 (461)
T 1z7x_W          319 WVKSCSFTAACCSH--------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  378 (461)
T ss_dssp             ECTTSCCBGGGHHH--------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             EcCCCCCchHHHHH--------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence            55555444321110                    1122333445555555555444443333321     3455555555


Q ss_pred             CCCCCh----hHHHhhhcCCCCceeeccCCCCCChhhHHHHh-----cCCCCcEEecccCccchh
Q 010711          405 GGGLTD----AGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       405 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~  460 (503)
                      +|.+++    ..+..+..+++|+.|++++| .++......+.     ..++|+.|++.++.+...
T Consensus       379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          379 DCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            555554    22333444555555555555 44443332222     123466666655555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.3e-35  Score=281.89  Aligned_cols=382  Identities=18%  Similarity=0.188  Sum_probs=291.0

Q ss_pred             EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccC
Q 010711           61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER  140 (503)
Q Consensus        61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  140 (503)
                      .++.++.+++. .+.   -.++|++|++++| .+....+..|+++++|++|++++|.......+..|.++++|++|++++
T Consensus        14 ~~~c~~~~l~~-lp~---l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLHQ-VPE---LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCSS-CCC---CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCccc-CCC---CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666653 222   2378999999997 677777788999999999999999743344467799999999999999


Q ss_pred             cccccCccccccCCccccEeeccCCcCCCcccc--ccccCCCCCCEEEeecccCCchhHHh-hhcCCCCCEEEcCCCCCc
Q 010711          141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPVT  217 (503)
Q Consensus       141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~  217 (503)
                      |......+..+.++++|++|++++|.. ....+  ..+..+++|++|+++++.+....+.. +..+++|++|++++|.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCC-BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CccCccChhhccCcccCCEEeCCCCCC-CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            775555678899999999999999753 33222  34888999999999999988765554 789999999999999887


Q ss_pred             HHHHHHhhCC--CCCCEEEccCCCCChhhhHh--------hhcCCCCCEEEccCCCCChHHHHHhhC---CCCCCEEEcc
Q 010711          218 AACLDSLSAL--GSLFYLNLNRCQLSDDGCEK--------FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNLD  284 (503)
Q Consensus       218 ~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~  284 (503)
                      ...+..+..+  .+++.++++++.+....+..        +..+++|+.|++++|.+.+..+..+..   .++|+.|.++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            6555555544  68999999998877543322        235578999999999998877766543   4899999999


Q ss_pred             CCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711          285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  364 (503)
Q Consensus       285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  364 (503)
                      ++.......    ....+..+  ....     ... ...++|+.+++++|.+....+..+..+++|++|++++|.+.+..
T Consensus       248 ~~~~~~~~~----~~~~~~~~--~~~~-----~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          248 NSYNMGSSF----GHTNFKDP--DNFT-----FKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TCTTTSCCT----TCCSSCCC--CTTT-----TGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccc----chhhhccC--cccc-----ccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            885432110    00011100  0000     001 12467888888888887766667778888999999888888877


Q ss_pred             HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711          365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  444 (503)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  444 (503)
                      +..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++..++..+..+
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  394 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL  394 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccC
Confidence            777888889999999999888877777888899999999999988877788888899999999998 7888777778889


Q ss_pred             CCCcEEecccCccchhh
Q 010711          445 TGLVSLNVSNSRITSAG  461 (503)
Q Consensus       445 ~~L~~L~l~~~~~~~~~  461 (503)
                      ++|+.|++++|++....
T Consensus       395 ~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TTCCEEECCSSCBCCCT
T ss_pred             CcccEEEccCCCcccCC
Confidence            99999999998876543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=1.9e-31  Score=267.81  Aligned_cols=388  Identities=21%  Similarity=0.240  Sum_probs=221.1

Q ss_pred             CCCCCCEEEcCCCccccHHHHHHHh-CCCCCcEEeccCcccccC--ccccccCCccccEeeccCCcCCCccccc----cc
Q 010711          104 GLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSDMK----PL  176 (503)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~  176 (503)
                      .+++|++|+++++. +++..+..+. .+++|++|++.+|..+..  .+....++++|++|++++|. +.+....    ..
T Consensus       103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            34444555544443 3333333333 344555555544432222  11222244455555554443 2211111    11


Q ss_pred             cCCCCCCEEEeeccc--CCchhHHh-hhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCC--Ch----hhhHh
Q 010711          177 SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL--SD----DGCEK  247 (503)
Q Consensus       177 ~~l~~L~~L~l~~~~--~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~----~~~~~  247 (503)
                      ..+++|++|+++++.  +....... +..+++|+.|++++|......+..+..+++|+.|++..+..  ..    ..+..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            244556666655543  22222222 24456666666666633333444555666666666554431  10    12234


Q ss_pred             hhcCCCCCEE-EccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH-HhcCCCCCEEecCCCccChhhHHH-hhCCC
Q 010711          248 FSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKCLELSDTQVGSSGLRH-LSGLT  324 (503)
Q Consensus       248 l~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  324 (503)
                      +..+++|+.+ .+..... ...+..+..+++|+.|++++|.+++..... +..+++|++|++.++ +.+..... ...++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            5566666666 2322211 122222334567777777777665543332 446677777777666 33322222 23467


Q ss_pred             CCCeeec---------cCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEcc--C----CccC--
Q 010711          325 NLESINL---------SFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLF--G----ARIT--  385 (503)
Q Consensus       325 ~L~~L~l---------~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~--  385 (503)
                      +|+.|++         ..+.+++.....+. .+++|++|.+.++.+++.....+. .+++|+.|+++  +    +.++  
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            7777776         23466665555554 478888887777888776666554 57888888887  3    3444  


Q ss_pred             --hH-HHHHHhcCCCCCeEEecCCCCChhHHHhhhc-CCCCceeeccCCCCCChhhHHHH-hcCCCCcEEecccCccchh
Q 010711          386 --DS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       386 --~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~  460 (503)
                        +. ....+..+++|+.|++++ .+++.+...+.. +++|+.|++++| .+++.....+ .++++|+.|++++|++++.
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence              22 233356788888888877 677776666655 788888888888 6776655555 6688888999988888766


Q ss_pred             hHh-hccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711          461 GLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  498 (503)
Q Consensus       461 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  498 (503)
                      +.. ....+++|++|++++|+++..+++.+. ..+|+|+
T Consensus       497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~  534 (594)
T 2p1m_B          497 ALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN  534 (594)
T ss_dssp             HHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred             HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence            654 334578889999999988888888774 4677764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4e-34  Score=289.91  Aligned_cols=423  Identities=22%  Similarity=0.208  Sum_probs=292.2

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .+++++|++++|.++...+..|.++++|++|+|++| .+....+.+|+.+++|++|++++|. +....+.+|.++++|++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence            457999999999999777778999999999999997 6777778889999999999999997 55666678999999999


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCC----CCEEEc
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNL  211 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~----L~~L~l  211 (503)
                      |++++|......+..++++++|++|++++|.......+..+..+++|++|+++++.+....+..+..+.+    ...+++
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l  208 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  208 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence            9999975444344568999999999999976544445677888999999999999887665555433322    224444


Q ss_pred             CCCCCc------------------------HHHHHHhhCCCCCCEEEccCCC------CCh-------------------
Q 010711          212 EGCPVT------------------------AACLDSLSALGSLFYLNLNRCQ------LSD-------------------  242 (503)
Q Consensus       212 ~~~~~~------------------------~~~~~~l~~l~~L~~L~l~~~~------~~~-------------------  242 (503)
                      +.+.+.                        ......+..+..++...+....      +..                   
T Consensus       209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            444332                        1122234444444433321100      000                   


Q ss_pred             --------hh----------------------hHhhhcCCCCCEEEccCCCCChHHHH-------------------Hhh
Q 010711          243 --------DG----------------------CEKFSKIGSLKVLNLGFNEITDECLV-------------------HLK  273 (503)
Q Consensus       243 --------~~----------------------~~~l~~~~~L~~L~l~~~~~~~~~~~-------------------~l~  273 (503)
                              ..                      ...+.....++.+++.++.+......                   ...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  368 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  368 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred             hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence                    00                      01112223344444443322211000                   001


Q ss_pred             CCCCCCEEEccCCCCCh--hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH-HHHHHhCCCCC
Q 010711          274 GLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSL  350 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  350 (503)
                      .+++|+.+.++.+.+..  ..+..+....+|+.+++..+..... ...+..+++|+.+++..+..... ....+..++++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccc
Confidence            23444444444443321  1122333444555555544433222 12344567777777776633322 12345678899


Q ss_pred             CEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711          351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  429 (503)
Q Consensus       351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  429 (503)
                      +.++++.|.+....+..+..+++++.|++++|.... ..+..+..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            999999998887767777889999999999996443 3456678899999999999999998888999999999999999


Q ss_pred             CCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCC-cccceEEeccCCCC
Q 010711          430 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVT  482 (503)
Q Consensus       430 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~  482 (503)
                      | +++...+..|.++++|+.|++++|+++...+..+..+ ++|+.|++++|+++
T Consensus       528 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          528 N-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             S-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             C-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9 8999888889999999999999999999988888877 68999999998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=9.4e-32  Score=269.81  Aligned_cols=388  Identities=19%  Similarity=0.216  Sum_probs=254.2

Q ss_pred             CCCCCCEEEcCCCccccHHHHHHHhC-CCC-CcEEeccCcccccC--ccccccCCccccEeeccCCcCCCccc----ccc
Q 010711          104 GLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG--GLVNLKGLMKLESLNIKWCNCITDSD----MKP  175 (503)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~  175 (503)
                      .+++|++|+++++. +++..+..+.. ++. |++|++++|.....  .......+++|++|++++|.. .+..    ...
T Consensus       110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHH
Confidence            67777777777774 45555555554 334 77777777653221  112234677777777777642 2221    123


Q ss_pred             ccCCCCCCEEEeecccCC----chhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCC---hhhhHhh
Q 010711          176 LSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLS---DDGCEKF  248 (503)
Q Consensus       176 ~~~l~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l  248 (503)
                      +..+++|++|+++++.+.    ......+..+++|+.|++++|.+.. .+..+..+++|++|+++.....   ......+
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            345778888888777665    2333445677888888888877665 3466777888888888753222   1122344


Q ss_pred             hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHH-HHHhcCCCCCEEecCCCccChhhH-HHhhCCCCC
Q 010711          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNL  326 (503)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L  326 (503)
                      ..+++|+.+++++... ...+..+..+++|++|++++|.+++... ..+..+++|++|++. +.+.+... .....+++|
T Consensus       267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence            5667888888876432 2344455667788888888887766544 345678888888887 33433333 333567888


Q ss_pred             CeeeccC-----------CCCChHHHHH-HhCCCCCCEeecCCCCCCHhHHHhhcC-CCCCCEEEcc----CCccCh---
Q 010711          327 ESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLF----GARITD---  386 (503)
Q Consensus       327 ~~L~l~~-----------~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~---  386 (503)
                      ++|++.+           +.+++..... ...+++|++|++..+.+++..+..+.. +++|+.|+++    .+.+++   
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            8888883           4666654444 345788888888778888777766654 7888888885    445554   


Q ss_pred             --HHHHHHhcCCCCCeEEecCC--CCChhHHHhhhc-CCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccchh
Q 010711          387 --SGAAYLRNFKNLRSLEICGG--GLTDAGVKHIKD-LSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       387 --~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                        ..+..+..+++|+.|+++.|  .+++.....+.. +++|+.|++++| .+++.. +..+.++++|+.|+|++|++++.
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence              23444567888888888653  367666665544 788888888888 677643 34456788888888888887765


Q ss_pred             hHh-hccCCcccceEEeccCCCCHHHHHHHHhcCCCCcc
Q 010711          461 GLR-HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV  498 (503)
Q Consensus       461 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  498 (503)
                      ... ....+++|++|++++|+++..+++.+. ..+|.+.
T Consensus       504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~  541 (592)
T 3ogk_B          504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWN  541 (592)
T ss_dssp             HHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEE
T ss_pred             HHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcE
Confidence            443 335678888888888888888777665 5667654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-32  Score=265.38  Aligned_cols=348  Identities=30%  Similarity=0.399  Sum_probs=275.3

Q ss_pred             cCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccc
Q 010711           78 KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL  157 (503)
Q Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  157 (503)
                      ..+++++.|+++++ .+...  ..+..+++|++|++++|.. ....+  +.++++|++|++++|. +...+. +.++++|
T Consensus        43 ~~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L  114 (466)
T 1o6v_A           43 TDLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNL  114 (466)
T ss_dssp             HHHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTC
T ss_pred             hHhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCc-cccChh-hcCCCCC
Confidence            35678999999987 44443  2478899999999999974 44433  8999999999999965 444444 8899999


Q ss_pred             cEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC
Q 010711          158 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR  237 (503)
Q Consensus       158 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  237 (503)
                      ++|++++|. +...  ..+..+++|++|+++++.+...  ..+..+++|+.|++.++ +...  ..+..+++|+.|++++
T Consensus       115 ~~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          115 TGLTLFNNQ-ITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISS  186 (466)
T ss_dssp             CEEECCSSC-CCCC--GGGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCS
T ss_pred             CEEECCCCC-CCCC--hHHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcC
Confidence            999999875 4433  3388999999999999988763  35888999999999643 3332  2378899999999999


Q ss_pred             CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH
Q 010711          238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL  317 (503)
Q Consensus       238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  317 (503)
                      |.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.....
T Consensus       187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence            988754  357888999999999998776544  66789999999999987754  356788999999999988776543


Q ss_pred             HHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCC
Q 010711          318 RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKN  397 (503)
Q Consensus       318 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  397 (503)
                        +..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+....+  +..+++
T Consensus       261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  332 (466)
T 1o6v_A          261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK  332 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence              7788899999999888876443  7788899999999988887543  6788899999999988877654  678889


Q ss_pred             CCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          398 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       398 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      |+.|++++|.+++.  ..+..+++|+.|++++| .+++..+  +..+++|+.|++++|+++..
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999998888775  46778888999999888 7777665  77888899999998887774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-31  Score=259.88  Aligned_cols=345  Identities=28%  Similarity=0.340  Sum_probs=285.7

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      .++++.|+++++.+...  ..+..+++|++|++++| .+....+  +..+++|++|++++|.. ....+  +.++++|++
T Consensus        45 l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCccC--cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence            45799999999888642  35788999999999997 5655543  88999999999999974 44333  899999999


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  215 (503)
                      |++++|. +...+. +.++++|++|++++|. +..  ...+..+++|++|++.+ .+...  ..+..+++|+.|++++|.
T Consensus       117 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence            9999974 444433 8899999999999865 332  24588899999999974 33332  238899999999999998


Q ss_pred             CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (503)
Q Consensus       216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  295 (503)
                      +...  ..+..+++|++|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            8764  357889999999999999886544  77899999999999988753  357789999999999998876554  


Q ss_pred             HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCC
Q 010711          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  375 (503)
Q Consensus       296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  375 (503)
                      +..+++|+.|++++|.+.....  +..+++|+.|++++|.+....+  +..+++|+.|++++|.+++..+  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            7889999999999998877544  7889999999999998886543  7889999999999999988654  67899999


Q ss_pred             EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711          376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                      .|++++|.+...  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++| .++.
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~  389 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTN  389 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEEC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccC
Confidence            999999998876  467899999999999999988765  788999999999999 5555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=2.5e-30  Score=259.64  Aligned_cols=471  Identities=21%  Similarity=0.229  Sum_probs=330.5

Q ss_pred             CcHHHHHHHHHHHH-hccccC--cccccccc--cCceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCC-Chhh--
Q 010711            2 LPRDISQQIFNELV-YSRCLT--EVSLEAFR--DCALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDV-TDSG--   73 (503)
Q Consensus         2 ~~~~~~~~~~~~l~-~~~~~~--~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~~~--   73 (503)
                      +|+|++..+|..|- .+....  .+-..+..  ....+.+.+..+.....   ..+...+++++.|+++++.. .+..  
T Consensus         9 LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~   85 (594)
T 2p1m_B            9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLV   85 (594)
T ss_dssp             -CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCS
T ss_pred             CCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccc
Confidence            79999999998776 221110  01111110  11234555555543332   24455689999999998532 1111  


Q ss_pred             -----------hh-hccCCCCCCEEecCCCeecChhhHHHhh-CCCCCCEEEcCCCccccHH-HHHHHhCCCCCcEEecc
Q 010711           74 -----------LI-HLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLE  139 (503)
Q Consensus        74 -----------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~  139 (503)
                                 .. ....+++|++|++++| .+.......+. .+++|++|++++|..++.. .+..+.++++|++|+++
T Consensus        86 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~  164 (594)
T 2p1m_B           86 PDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR  164 (594)
T ss_dssp             CTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred             cccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence                       11 1357899999999998 57777777776 7999999999999655554 44455589999999999


Q ss_pred             CcccccCcccc----ccCCccccEeeccCCc-CCCcccccc-ccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCC
Q 010711          140 RCTRIHGGLVN----LKGLMKLESLNIKWCN-CITDSDMKP-LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG  213 (503)
Q Consensus       140 ~~~~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  213 (503)
                      +|......+..    ...+++|++|++++|. .+....... ...+++|++|++.++......+..+..+++|+.|++..
T Consensus       165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            98733333322    3467899999999876 222222222 34579999999998743334566778899999999876


Q ss_pred             CCC--c----HHHHHHhhCCCCCCEE-EccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHH-HhhCCCCCCEEEccC
Q 010711          214 CPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV-HLKGLTNLESLNLDS  285 (503)
Q Consensus       214 ~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~  285 (503)
                      +..  .    ...+..+.++++|+.+ .+..... ...+..+..+++|+.|+++++.+...... .+..+++|+.|.+.+
T Consensus       245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             ccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence            642  1    1234467889999999 3433221 22334445779999999999987765443 356889999999998


Q ss_pred             CCCChhHHHHH-hcCCCCCEEecC---------CCccChhhHHHhh-CCCCCCeeeccCCCCChHHHHHHh-CCCCCCEe
Q 010711          286 CGIGDEGLVNL-TGLCNLKCLELS---------DTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA-GLSSLKSL  353 (503)
Q Consensus       286 ~~~~~~~~~~l-~~~~~L~~L~l~---------~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L  353 (503)
                      | +++.....+ ..+++|++|++.         .+.+.+.....+. .+++|+.|.+..+.+++.....+. .+++|+.|
T Consensus       324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            8 554444444 358999999983         3456655554443 489999999888899987777776 58999999


Q ss_pred             ecC--C----CCCC----HhHH-HhhcCCCCCCEEEccCCccChHHHHHHhc-CCCCCeEEecCCCCChhHHHhh-hcCC
Q 010711          354 NLD--A----RQIT----DTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEICGGGLTDAGVKHI-KDLS  420 (503)
Q Consensus       354 ~l~--~----~~~~----~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~  420 (503)
                      +++  +    +.++    +.+. ..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.+...+ ..++
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            998  3    5666    3222 3356789999999988 777777777765 9999999999999988777766 6789


Q ss_pred             CCceeeccCCCCCChhhHH-HHhcCCCCcEEecccCccchhhHhhc-cCCcccceEEeccCC
Q 010711          421 SLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCK  480 (503)
Q Consensus       421 ~L~~L~l~~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~  480 (503)
                      +|+.|++++| .+++.... ....+++|+.|++++|+++..+...+ ..+|+|+...+.++.
T Consensus       482 ~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          482 SLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            9999999999 56765554 34568999999999999987776666 567888777776653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3e-31  Score=247.56  Aligned_cols=306  Identities=27%  Similarity=0.355  Sum_probs=212.8

Q ss_pred             CCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCE
Q 010711          153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  232 (503)
Q Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  232 (503)
                      .+++|++|++.++....   ...+..+++|++|+++++.+.....  +..+++|++|++++|.+...  ..+..+++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHTTCSEEECCSSCCCC---CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hcccccEEEEeCCcccc---chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            44555666665533221   1235556666666666665554322  56666666666666655542  24566666777


Q ss_pred             EEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc
Q 010711          233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  312 (503)
Q Consensus       233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  312 (503)
                      |++++|.+....+  +..+++|+.|++++|...... ..+..+++|+.|++++|.+.....  +..+++|++|++++|.+
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            7776666654322  556667777777666433222 225667777777777776654433  66777777777777776


Q ss_pred             ChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH
Q 010711          313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  392 (503)
Q Consensus       313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  392 (503)
                      .....  +..+++|+.+++.+|.+....+  +..+++|++|++++|.++...+  +..+++|+.|++++|.+...  ..+
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            65433  6677788888888887765433  6778888888888888877544  77888999999999888775  357


Q ss_pred             hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccc
Q 010711          393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR  472 (503)
Q Consensus       393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  472 (503)
                      ..+++|++|++++|.+++.  ..+..+++|+.|++++| .++...+..+.++++|+.|++++|+++...+  +..+++|+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            7889999999999988875  45778899999999999 8888888889999999999999999988765  77899999


Q ss_pred             eEEeccCCCCH
Q 010711          473 SLTLESCKVTA  483 (503)
Q Consensus       473 ~L~l~~~~~~~  483 (503)
                      +|++++|+++.
T Consensus       337 ~L~l~~N~i~~  347 (347)
T 4fmz_A          337 SADFANQVIKK  347 (347)
T ss_dssp             EESSSCC----
T ss_pred             eeehhhhcccC
Confidence            99999998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=1.8e-32  Score=272.41  Aligned_cols=428  Identities=20%  Similarity=0.171  Sum_probs=288.7

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      +...+++++++++++. .|..+.  ++|++|++++| .+....+..|+.+++|++|++++|. +....|..|.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCE
Confidence            4455899999999985 454443  89999999997 6777777889999999999999996 56666888999999999


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCC--CEEEcCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL--TLLNLEG  213 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~  213 (503)
                      |++++|. +...+..  .+++|++|++++|.......+..+..+++|++|+++++.+....   +..+++|  +.|++++
T Consensus       105 L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred             EECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence            9999965 4455544  79999999999976433234578899999999999999887643   4444555  9999999


Q ss_pred             CCC--cHHHHHHhhCC--------------------------CCCCEEEccCCCCCh----hhhHhhhcCCCCCEEEccC
Q 010711          214 CPV--TAACLDSLSAL--------------------------GSLFYLNLNRCQLSD----DGCEKFSKIGSLKVLNLGF  261 (503)
Q Consensus       214 ~~~--~~~~~~~l~~l--------------------------~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~  261 (503)
                      |.+  ....+..+..+                          ++|+.++++++....    .....+..+++|+.+++.+
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            877  44333334332                          233344444332110    1112333444444444444


Q ss_pred             CCCChHHHHH---hhCCCCCCEEEccCCCCChhHHHHH-----hcCCCCCEEecCCCcc--ChhhHHHhhCCCCCCeeec
Q 010711          262 NEITDECLVH---LKGLTNLESLNLDSCGIGDEGLVNL-----TGLCNLKCLELSDTQV--GSSGLRHLSGLTNLESINL  331 (503)
Q Consensus       262 ~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l  331 (503)
                      +.+.......   ....++|++|++++|.+.+..+..+     ..+..|+.+++..+.+  .......+-..++|+.|++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence            4333221111   1122355555555554332222211     1222222222222222  0011111112256888888


Q ss_pred             cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh--HHHHHHhcCCCCCeEEecCCCCC
Q 010711          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD--SGAAYLRNFKNLRSLEICGGGLT  409 (503)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~  409 (503)
                      +++.+....  ....+++|++|++++|.+++..+..+..+++|+.|++++|.++.  ..+..+..+++|+.|++++|.++
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            887665321  11578999999999999998777888899999999999999987  33566889999999999999998


Q ss_pred             h-hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHH
Q 010711          410 D-AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKR  488 (503)
Q Consensus       410 ~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  488 (503)
                      + .....+..+++|+.|++++| .++...+..+.  ++|+.|++++|.++.++. .+..+++|++|++++|.++......
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~  492 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGV  492 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred             CccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcCcccCh-hhcCCCCCCEEECCCCCCCCCCHHH
Confidence            7 44445778899999999999 77764443322  699999999999997644 4448999999999999988543322


Q ss_pred             HHhcCCCCcccccC
Q 010711          489 LQSRDLPNLVSFRP  502 (503)
Q Consensus       489 ~~~~~~~~L~~l~~  502 (503)
                      +  ..+++|+.+.+
T Consensus       493 ~--~~l~~L~~L~l  504 (562)
T 3a79_B          493 F--DRLTSLQYIWL  504 (562)
T ss_dssp             T--TTCTTCCCEEC
T ss_pred             H--hcCCCCCEEEe
Confidence            4  37888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=8e-33  Score=269.63  Aligned_cols=319  Identities=19%  Similarity=0.218  Sum_probs=206.6

Q ss_pred             EEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCC
Q 010711          135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC  214 (503)
Q Consensus       135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  214 (503)
                      .++.++ ..+...|..+.  +.+++|+++++. +....+..+..+++|++|+++++.+....+..+.++++|+.|++++|
T Consensus        15 ~v~c~~-~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHR-KRFVAVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCS-CCCSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCC-CCcCcCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            444444 23333443332  577888888744 55555667777888888888888777766677788888888888888


Q ss_pred             CCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHH
Q 010711          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV  294 (503)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  294 (503)
                      .+.......+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+......
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            77655444566778888888888877766666777778888888887777665555666777788888877777766666


Q ss_pred             HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (503)
Q Consensus       295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  374 (503)
                      .+..+++|+.|+++++.+.......+..+++|+.|++++|......+.......+|++|++++|.++..+...+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            67777777777777777666555556666677777776654333222222233466666666666665554555566666


Q ss_pred             CEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc
Q 010711          375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN  454 (503)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~  454 (503)
                      +.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .++...+..|..+++|+.|++++
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence            66666666665555555555666666666666665555555555666666666666 55555555555566666666666


Q ss_pred             Cccc
Q 010711          455 SRIT  458 (503)
Q Consensus       455 ~~~~  458 (503)
                      |++.
T Consensus       330 N~l~  333 (477)
T 2id5_A          330 NPLA  333 (477)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            6544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=5e-30  Score=239.26  Aligned_cols=305  Identities=30%  Similarity=0.352  Sum_probs=178.6

Q ss_pred             CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC
Q 010711          104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  183 (503)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  183 (503)
                      .+++|++|+++++.. .. .+ .+..+++|++|++++|. +...+. +..+++|++|++++|. +..  ...+..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i-~~-~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKV-AS-IQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCC-CC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTCS
T ss_pred             hcccccEEEEeCCcc-cc-ch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcCC
Confidence            456777777777653 22 12 25666677777776653 333322 5666666666666643 221  23455566666


Q ss_pred             EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711          184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  263 (503)
                      +|+++++.+.....  +..+++|+.|++++|...... ..+..+++|++|+++++.+....+  +..             
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~-------------  175 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IAN-------------  175 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hcc-------------
Confidence            66666555553322  455555555555555322211 124445555555555554443221  344             


Q ss_pred             CChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHH
Q 010711          264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  343 (503)
Q Consensus       264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  343 (503)
                                 +++|+.|++++|.+.+...  +..+++|+.+++.++.+.....  +..+++|+.|++++|.++...+  
T Consensus       176 -----------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          176 -----------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             -----------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             -----------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence                       4455555555544433222  4445555555555555443322  4455666666666665554332  


Q ss_pred             HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711          344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (503)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  423 (503)
                      +..+++|++|++++|.++..  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            55667777777777766653  3466777788888877777664  3467778888888888888877777778888888


Q ss_pred             eeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       424 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      .|++++| .++...+  +..+++|+.|++++|+++
T Consensus       315 ~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQN-HITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence            8888888 6776655  677888888888888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=6.3e-32  Score=263.28  Aligned_cols=318  Identities=20%  Similarity=0.184  Sum_probs=259.5

Q ss_pred             CEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEee
Q 010711          109 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS  188 (503)
Q Consensus       109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  188 (503)
                      +.++.++... . .+|..+  .+++++|+++++......+..+.++++|++|++++| .+....+..+..+++|++|+++
T Consensus        14 ~~v~c~~~~l-~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRF-V-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCC-S-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCc-C-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence            4566655542 2 234323  258999999996644444567889999999999985 4565667788899999999999


Q ss_pred             cccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH
Q 010711          189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC  268 (503)
Q Consensus       189 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  268 (503)
                      ++.+.......+.++++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            99888766667788999999999999887766667888999999999999888777778888999999999999888777


Q ss_pred             HHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCC
Q 010711          269 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS  348 (503)
Q Consensus       269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  348 (503)
                      ...+..+++|+.|++.++.+.......+..+++|+.|+++++..............+|+.|++++|.++......+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            77788899999999999988776666778889999999988766554443344456899999999988877667788899


Q ss_pred             CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  428 (503)
                      +|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            99999999999988777778889999999999999988877788889999999999999988777778888999999999


Q ss_pred             CCC
Q 010711          429 QNC  431 (503)
Q Consensus       429 ~~~  431 (503)
                      +|+
T Consensus       329 ~N~  331 (477)
T 2id5_A          329 SNP  331 (477)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            984

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=3.1e-30  Score=258.79  Aligned_cols=440  Identities=17%  Similarity=0.153  Sum_probs=312.1

Q ss_pred             CChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHH
Q 010711           44 VNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQG  123 (503)
Q Consensus        44 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  123 (503)
                      +...|........   +.+.+.+. ........+.++++|++|++++|..+...     +..+.      ..........
T Consensus        40 vck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-----~~~~~------~~~~~~~~~l  104 (592)
T 3ogk_B           40 VCRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMF-----NLIPE------NWGGYVTPWV  104 (592)
T ss_dssp             SCHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGG-----TCSCT------TSCCBCHHHH
T ss_pred             HhHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhc-----ccccc------cccccchHHH
Confidence            3556766543322   23333321 11122334567888888888887443221     11110      1111122334


Q ss_pred             HHHHhCCCCCcEEeccCcccccCccccccC-Ccc-ccEeeccCCcCCCcccccc-ccCCCCCCEEEeecccCCch----h
Q 010711          124 MKAFAGLINLVKLDLERCTRIHGGLVNLKG-LMK-LESLNIKWCNCITDSDMKP-LSGLTNLKSLQISCSKVTDS----G  196 (503)
Q Consensus       124 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~----~  196 (503)
                      +....++++|++|++++|......+..+.. ++. |++|++.+|.......... ...+++|++|+++++.+.+.    .
T Consensus       105 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             HHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            444558999999999997543334444544 445 9999999987544333332 34789999999999876544    3


Q ss_pred             HHhhhcCCCCCEEEcCCCCCc----HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC---hHHH
Q 010711          197 IAYLKGLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT---DECL  269 (503)
Q Consensus       197 ~~~l~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~  269 (503)
                      ......+++|+.|+++++.+.    ...+..+..+++|+.|+++++.+.. .+..+..+++|+.|+++.....   ....
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence            344578899999999999886    3445556789999999999988765 5577888999999999853222   1122


Q ss_pred             HHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH-HHhhCCCCCCeeeccCCCCChHHHHH-HhCC
Q 010711          270 VHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRK-LAGL  347 (503)
Q Consensus       270 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~  347 (503)
                      ..+..+++|+.+.+.++.. ...+..+..+++|++|++++|.+..... ..+..+++|+.|++. +.+.+..... ...+
T Consensus       264 ~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~  341 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC  341 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC
T ss_pred             HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC
Confidence            3356778999999987632 2344566778999999999998776554 446889999999998 4454444443 4578


Q ss_pred             CCCCEeecC-----------CCCCCHhHHHh-hcCCCCCCEEEccCCccChHHHHHHhc-CCCCCeEEec----CCCCCh
Q 010711          348 SSLKSLNLD-----------ARQITDTGLAA-LTSLTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEIC----GGGLTD  410 (503)
Q Consensus       348 ~~L~~L~l~-----------~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~  410 (503)
                      ++|++|++.           .+.+++.+... ...+++|+.|++..+.+++.....+.. +++|++|+++    .+.+++
T Consensus       342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence            999999999           46777765544 346899999999888999888777765 9999999996    566765


Q ss_pred             h-----HHHhhhcCCCCceeeccCCC-CCChhhHHHHh-cCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCC
Q 010711          411 A-----GVKHIKDLSSLTLLNLSQNC-NLTDKTLELIS-GLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       411 ~-----~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~  482 (503)
                      .     ....+..+++|+.|++++|. .++......+. .+++|+.|++++|++++... ..+..+++|++|++++|+++
T Consensus       422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            2     34456779999999998763 36776666655 48999999999999988654 44578999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccccC
Q 010711          483 ANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       483 ~~~~~~~~~~~~~~L~~l~~  502 (503)
                      ..++..+. ..+|+|+.|++
T Consensus       502 ~~~~~~~~-~~l~~L~~L~l  520 (592)
T 3ogk_B          502 ERAIAAAV-TKLPSLRYLWV  520 (592)
T ss_dssp             HHHHHHHH-HHCSSCCEEEE
T ss_pred             HHHHHHHH-HhcCccCeeEC
Confidence            98888775 57899998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=7.8e-32  Score=273.15  Aligned_cols=431  Identities=21%  Similarity=0.222  Sum_probs=280.0

Q ss_pred             EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccC
Q 010711           61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER  140 (503)
Q Consensus        61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  140 (503)
                      +.+.++.+++ .+|..++  +++++|+|++| .++...+.+|.++++|++|++++|. +....+.+|.++++|++|++++
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccC
Confidence            3455555555 3344332  47999999997 7887778889999999999999996 5666677899999999999999


Q ss_pred             cccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCch-hHHhhhcCCCCCEEEcCCCCCcHH
Q 010711          141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAA  219 (503)
Q Consensus       141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~  219 (503)
                      |......+..+.++++|++|++++|. +.......++.+++|++|+++++.+... .+..+..+++|+.|++++|.+...
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            75333344568999999999999965 5555666789999999999999988653 356678899999999999988664


Q ss_pred             HHHHhhCCC----CCCEEEccCCCCChhhh------------------------HhhhcCCCCCEEEccCCC------CC
Q 010711          220 CLDSLSALG----SLFYLNLNRCQLSDDGC------------------------EKFSKIGSLKVLNLGFNE------IT  265 (503)
Q Consensus       220 ~~~~l~~l~----~L~~L~l~~~~~~~~~~------------------------~~l~~~~~L~~L~l~~~~------~~  265 (503)
                      .+..+..+.    ....++++.+.+....+                        ..+..+..++...+....      +.
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~  268 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE  268 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence            444443322    23355565554443221                        222233333322221100      00


Q ss_pred             hH---------------------------HHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhh--
Q 010711          266 DE---------------------------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--  316 (503)
Q Consensus       266 ~~---------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--  316 (503)
                      ..                           ....+....+++.+.+.++.+...  ..+.....++.|++.++.+....  
T Consensus       269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~  346 (635)
T 4g8a_A          269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL  346 (635)
T ss_dssp             CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred             cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc
Confidence            00                           000000111222222221111000  01112223333333332221100  


Q ss_pred             -----------------HHHhhCCCCCCeeeccCCCCChH--HH-----------------------HHHhCCCCCCEee
Q 010711          317 -----------------LRHLSGLTNLESINLSFTGISDG--SL-----------------------RKLAGLSSLKSLN  354 (503)
Q Consensus       317 -----------------~~~~~~~~~L~~L~l~~~~~~~~--~~-----------------------~~~~~~~~L~~L~  354 (503)
                                       ......+++|+.++++.+.+...  .+                       ..+..+++|+.++
T Consensus       347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~  426 (635)
T 4g8a_A          347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD  426 (635)
T ss_dssp             BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred             cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence                             00112344555555555443211  01                       1223456666666


Q ss_pred             cCCCCCCHh-HHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCC-hhHHHhhhcCCCCceeeccCCCC
Q 010711          355 LDARQITDT-GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCN  432 (503)
Q Consensus       355 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~  432 (503)
                      +..+..... ....+..+++++.++++.|.+....+..+..+++|+.|++++|.+. ...+..+..+++|+.|++++| +
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~  505 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-Q  505 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-C
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-c
Confidence            665443322 2244567788888999888887777777888999999999998753 345667888999999999999 8


Q ss_pred             CChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCC-CCcccccC
Q 010711          433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP  502 (503)
Q Consensus       433 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~l~~  502 (503)
                      ++...+..|.++++|++|+|++|+++.+.+..+..+++|+.|++++|.++......+.  .+ ++|+.|.+
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L  574 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL  574 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence            9998888999999999999999999998888899999999999999999877655554  55 56887765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=245.56  Aligned_cols=316  Identities=20%  Similarity=0.183  Sum_probs=181.0

Q ss_pred             CCCCcEEeccCcccccCcc-ccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCE
Q 010711          130 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL  208 (503)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  208 (503)
                      ++++++|+++++. +...+ ..+..+++|++|+++++. +....+..+..+++|++|+++++.+....+..+..+++|+.
T Consensus        44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4566666666643 33333 234556666666666643 34444445666666666666666665555555566666666


Q ss_pred             EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCC
Q 010711          209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI  288 (503)
Q Consensus       209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  288 (503)
                      |++++|.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.++++++.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            66666655543323345556666666666655554444455555566666655554432   123344555555555443


Q ss_pred             ChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhh
Q 010711          289 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL  368 (503)
Q Consensus       289 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  368 (503)
                      ..                             +...++|+.|++++|.+....   ....++|+.|++++|.+++.  ..+
T Consensus       199 ~~-----------------------------~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----------------------------LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----------------------------EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----------------------------cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHH
Confidence            32                             122334555555555444321   11235666666666666553  345


Q ss_pred             cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCc
Q 010711          369 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV  448 (503)
Q Consensus       369 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~  448 (503)
                      ..+++|+.|++++|.+....+..+..+++|++|++++|.+++. +..+..+++|+.|++++| .+... +..+..+++|+
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~l~~L~  321 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLHV-ERNQPQFDRLE  321 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCCC-GGGHHHHTTCS
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-cceec-CccccccCcCC
Confidence            5666677777777766665555666677777777777766653 233345677777777777 56543 33455667777


Q ss_pred             EEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHH
Q 010711          449 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ  490 (503)
Q Consensus       449 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  490 (503)
                      .|++++|++....   +..+++|+.|++++|+++......+.
T Consensus       322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~  360 (390)
T 3o6n_A          322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF  360 (390)
T ss_dssp             EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred             EEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence            7777777776652   45667777777777777766655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=5.1e-29  Score=236.07  Aligned_cols=314  Identities=17%  Similarity=0.176  Sum_probs=219.8

Q ss_pred             CCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCC
Q 010711          104 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK  183 (503)
Q Consensus       104 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  183 (503)
                      .++++++|+++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence            36899999999986 455555668899999999999976444445678999999999999865 5556667789999999


Q ss_pred             EEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCC
Q 010711          184 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       184 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  263 (503)
                      +|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.++++++.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            999999999876666678999999999999998876666788999999999999998864   35678999999999998


Q ss_pred             CChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHH
Q 010711          264 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK  343 (503)
Q Consensus       264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  343 (503)
                      +..     +...++|+.|++++|.+.....   ...++|+.|++++|.+...  ..                        
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~------------------------  243 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AW------------------------  243 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GG------------------------
T ss_pred             ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HH------------------------
Confidence            764     3456788899998887754321   1234566666655554432  23                        


Q ss_pred             HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711          344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (503)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  423 (503)
                      +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++..+ ..+..+++|++|++++|.+... +..+..+++|+
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~  321 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLE  321 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCS
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceec-CccccccCcCC
Confidence            344455555555555555444444555555555555555554431 1223456666666666666543 33345566677


Q ss_pred             eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711          424 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL  462 (503)
Q Consensus       424 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  462 (503)
                      .|++++| .++...   +..+++|+.|++++|++.....
T Consensus       322 ~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          322 NLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             EEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             EEECCCC-ccceeC---chhhccCCEEEcCCCCccchhH
Confidence            7777766 455432   4556777777777777665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.2e-29  Score=253.35  Aligned_cols=309  Identities=17%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             CCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEE
Q 010711          130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLL  209 (503)
Q Consensus       130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  209 (503)
                      +.+++.++++++......+..+..+++|++|++++|. +....+..+..+++|++|+++++.+....+..+..+++|+.|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            4677788877754322223345677778888887754 455555567777788888887777776666667777777777


Q ss_pred             EcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCC
Q 010711          210 NLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG  289 (503)
Q Consensus       210 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  289 (503)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            77777776544444567777777777777777666666777777777777777665432   345666777777766554


Q ss_pred             hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711          290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  369 (503)
Q Consensus       290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  369 (503)
                      .     +...++|+.|++++|.+.....   ...++|+.|++++|.++..  ..+..+++|+.|++++|.+.+..+..+.
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            3     2234556666666665543221   1124555555555555432  3344455555555555555544444444


Q ss_pred             CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcE
Q 010711          370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS  449 (503)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~  449 (503)
                      .+++|+.|++++|.+... +..+..+++|+.|++++|.+... +..+..+++|+.|++++| .++...   +..+++|+.
T Consensus       276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSE
T ss_pred             CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCE
Confidence            555555555555544442 11223344555555555544432 223344444555555544 333321   333444444


Q ss_pred             EecccCccc
Q 010711          450 LNVSNSRIT  458 (503)
Q Consensus       450 L~l~~~~~~  458 (503)
                      |++++|++.
T Consensus       350 L~l~~N~~~  358 (597)
T 3oja_B          350 LTLSHNDWD  358 (597)
T ss_dssp             EECCSSCEE
T ss_pred             EEeeCCCCC
Confidence            444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.8e-29  Score=240.97  Aligned_cols=344  Identities=20%  Similarity=0.139  Sum_probs=221.7

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      +++++.|+++++.+++.  ..+..+++|++|++++| .+...   .++.+++|++|++++|.. .+. +  ++++++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred             cCCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence            57788888888888754  36788888888888887 45554   277888888888888863 332 2  778888888


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  215 (503)
                      |++++|. +...+  +..+++|++|++++|. ++..   .+..+++|++|+++++......  .+..+++|+.|++++|.
T Consensus       111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            8888864 33332  7778888888888755 3322   3667888888888877433222  46677888888888887


Q ss_pred             CcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHH
Q 010711          216 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN  295 (503)
Q Consensus       216 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  295 (503)
                      +... +  +..+++|+.|++++|.+...   .+..+++|+.|++++|.+.+. +  +..+++|+.|++++|.+.+..   
T Consensus       182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence            7663 1  66778888888888877754   366778888888888877763 2  667788888888888776543   


Q ss_pred             HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHH--------h
Q 010711          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------A  367 (503)
Q Consensus       296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~  367 (503)
                      +..+++|+.++++.+              +|+.+++++|......+  +..+++|+.|++++|...+..+.        .
T Consensus       250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            345666666665443              34444444443222111  23455666666655543322110        1


Q ss_pred             hcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCC
Q 010711          368 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL  447 (503)
Q Consensus       368 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L  447 (503)
                      +..+++|+.|++++|+++..   .+..+++|+.|++++|.+.+        ++.|..|.+++| .+.+.     ..+..|
T Consensus       314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n-~l~g~-----~~~~~l  376 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN-NFEAE-----GQTITM  376 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT-SEEEE-----EEEEEC
T ss_pred             hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC-cEEec-----ceeeec
Confidence            22345666666666666653   25566666666666666654        244555555555 34332     244567


Q ss_pred             cEEecccCccchhhHh
Q 010711          448 VSLNVSNSRITSAGLR  463 (503)
Q Consensus       448 ~~L~l~~~~~~~~~~~  463 (503)
                      ..+++++|.++...|.
T Consensus       377 ~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          377 PKETLTNNSLTIAVSP  392 (457)
T ss_dssp             CCBCCBTTBEEEECCT
T ss_pred             CccccccCcEEEEcCh
Confidence            7777888777755443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.4e-28  Score=236.10  Aligned_cols=355  Identities=17%  Similarity=0.166  Sum_probs=254.3

Q ss_pred             ceeEEecCCCCCCChhHHHHHHhcCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEE
Q 010711           32 ALQDLCLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSL  111 (503)
Q Consensus        32 ~l~~l~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  111 (503)
                      .++.+.+..+. +...  .. ...+++|+.|+++++.+++.   .++.+++|++|++++| .+...   .++.+++|++|
T Consensus        43 ~L~~L~Ls~n~-l~~~--~~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L  111 (457)
T 3bz5_A           43 TLTSLDCHNSS-ITDM--TG-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYL  111 (457)
T ss_dssp             TCCEEECCSSC-CCCC--TT-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEE
T ss_pred             CCCEEEccCCC-cccC--hh-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEE
Confidence            57788776553 2221  12 34589999999999998864   2789999999999997 56554   27889999999


Q ss_pred             EcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeeccc
Q 010711          112 SFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK  191 (503)
Q Consensus       112 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  191 (503)
                      ++++|.. .. .+  +.++++|++|++++|. +...  .+..+++|++|++++|......   .+..+++|++|+++++.
T Consensus       112 ~L~~N~l-~~-l~--~~~l~~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          112 NCDTNKL-TK-LD--VSQNPLLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             ECCSSCC-SC-CC--CTTCTTCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred             ECCCCcC-Ce-ec--CCCCCcCCEEECCCCc-ccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence            9999974 33 23  8899999999999965 3333  3788999999999987655433   47788999999999998


Q ss_pred             CCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHH
Q 010711          192 VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVH  271 (503)
Q Consensus       192 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  271 (503)
                      ++...   +..+++|+.|++++|.+...   .+..+++|+.|++++|.+... +  +..+++|+.|++++|.+.+..   
T Consensus       182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence            88643   78889999999999988764   477889999999999998873 3  778899999999999887643   


Q ss_pred             hhCCCCCCEEEccCCCCC----------hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHH
Q 010711          272 LKGLTNLESLNLDSCGIG----------DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL  341 (503)
Q Consensus       272 l~~~~~L~~L~l~~~~~~----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  341 (503)
                      +..+++|+.|.+.++.+.          ...+  +..+++|+.|++++|......+   ...++|+.+++          
T Consensus       250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~l----------  314 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELDL----------  314 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCCC----------
T ss_pred             HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEech----------
Confidence            345666666665544221          1111  2234555555555554322211   12233444433          


Q ss_pred             HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711          342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  421 (503)
Q Consensus       342 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  421 (503)
                         ..+++|++|++++|.+++.   .+..+++|+.|++++|++.+        ++.|+.|.+++|.+.+.     +.+..
T Consensus       315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~  375 (457)
T 3bz5_A          315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTIT  375 (457)
T ss_dssp             ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEE
T ss_pred             ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeee
Confidence               3458899999999999884   37789999999999998875        46777888888887764     35677


Q ss_pred             CceeeccCCCCCChhhHHHH-hcCCCCcEEeccc
Q 010711          422 LTLLNLSQNCNLTDKTLELI-SGLTGLVSLNVSN  454 (503)
Q Consensus       422 L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~  454 (503)
                      |..+++++| ++++..|..+ ....++.....+.
T Consensus       376 l~~l~l~~N-~l~g~ip~~~~~~~~~~~~~~~~~  408 (457)
T 3bz5_A          376 MPKETLTNN-SLTIAVSPDLLDQFGNPMNIEPGD  408 (457)
T ss_dssp             CCCBCCBTT-BEEEECCTTCBCTTSCCCEEEESS
T ss_pred             cCccccccC-cEEEEcChhHhcccCceeeccCCC
Confidence            888999998 7776554433 2334454444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=5.9e-29  Score=238.55  Aligned_cols=372  Identities=15%  Similarity=0.072  Sum_probs=204.6

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCC-------------CCEEEcCCCccccHH
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQ  122 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~  122 (503)
                      ..+|+.++++++.+ +..|..++++++|++|++++| .+....+..++.+.+             +++|++++|.. .+ 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~-   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS-   85 (454)
T ss_dssp             -------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-
Confidence            45677777777777 566667777777777777765 333333444444433             57788877753 22 


Q ss_pred             HHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhc
Q 010711          123 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKG  202 (503)
Q Consensus       123 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  202 (503)
                      .|.   -.++|++|++++|. +...+..   +++|++|++++|. +...  ..+  .++|++|+++++.+... + .+..
T Consensus        86 lp~---~~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~-l~~l--~~~--~~~L~~L~L~~n~l~~l-p-~~~~  151 (454)
T 1jl5_A           86 LPE---LPPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNN-LKAL--SDL--PPLLEYLGVSNNQLEKL-P-ELQN  151 (454)
T ss_dssp             CCS---CCTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSC-CSCC--CSC--CTTCCEEECCSSCCSSC-C-CCTT
T ss_pred             CCC---CcCCCCEEEccCCc-CCccccc---cCCCcEEECCCCc-cCcc--cCC--CCCCCEEECcCCCCCCC-c-ccCC
Confidence            122   23577888887753 3333322   3677788877753 2221  111  15778888877777652 2 4777


Q ss_pred             CCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEE
Q 010711          203 LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLN  282 (503)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  282 (503)
                      +++|++|++++|.+... +.   ..++|++|++++|.+... + .+..+++|+.|++++|.+.+. +   ...++|+.|+
T Consensus       152 l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l-~---~~~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKL-P---DLPLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-C---CCCTTCCEEE
T ss_pred             CCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcC-C---CCcCcccEEE
Confidence            77888888887776542 11   234778888887777652 2 467777888888877766531 1   1235777888


Q ss_pred             ccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711          283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  362 (503)
Q Consensus       283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  362 (503)
                      +++|.+...+  .+..+++|++|++++|.+....    ..+++|+.|++++|.+....    ...++|++|++++|.+++
T Consensus       222 l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          222 AGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSE
T ss_pred             CcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccCc
Confidence            8877666332  3667777888888777765421    12467788888777666421    124677888888777765


Q ss_pred             hHHHhhcCCCCCCEEEccCCccChHHHHHHhcC-CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH
Q 010711          363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  441 (503)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  441 (503)
                      ..    ...++|+.|++++|.+...     ... ++|+.|++++|.+++.. .   .+++|+.|++++| .++..+.   
T Consensus       292 l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N-~l~~lp~---  354 (454)
T 1jl5_A          292 LS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFN-HLAEVPE---  354 (454)
T ss_dssp             ES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCCCC---
T ss_pred             cc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCC-ccccccc---
Confidence            21    1225777888877777652     223 47778888877776521 1   2467788888777 6665433   


Q ss_pred             hcCCCCcEEecccCccch--hhHhhccCC-------------cccceEEeccCCCCH
Q 010711          442 SGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCKVTA  483 (503)
Q Consensus       442 ~~l~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~~~  483 (503)
                       .+++|+.|++++|++..  ..|..+..+             ++|+.|++++|+++.
T Consensus       355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence             46778888888877776  334444444             677888888877664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2.5e-28  Score=243.77  Aligned_cols=312  Identities=16%  Similarity=0.165  Sum_probs=257.9

Q ss_pred             CCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCE
Q 010711          105 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS  184 (503)
Q Consensus       105 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  184 (503)
                      +.+++.++++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++
T Consensus        50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence            5789999999986 455556678899999999999976444445688999999999999865 66666777899999999


Q ss_pred             EEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCC
Q 010711          185 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  264 (503)
Q Consensus       185 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  264 (503)
                      |+++++.+...+...+..+++|+.|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            99999999876666678999999999999998877666788999999999999988764   356688999999999987


Q ss_pred             ChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH
Q 010711          265 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL  344 (503)
Q Consensus       265 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  344 (503)
                      ..     +...++|+.|++++|.+.....   ...++|+.|++++|.+.+.  ..+..+++|+.|++++|.+....+..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            64     4566789999999998765432   1246899999999988764  567889999999999999988777788


Q ss_pred             hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711          345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  424 (503)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  424 (503)
                      ..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+.+..   +..+++|+.
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence            8999999999999999874 33445789999999999998865 445678999999999999988753   667899999


Q ss_pred             eeccCCCCCChhh
Q 010711          425 LNLSQNCNLTDKT  437 (503)
Q Consensus       425 L~l~~~~~l~~~~  437 (503)
                      |++++| .+....
T Consensus       350 L~l~~N-~~~~~~  361 (597)
T 3oja_B          350 LTLSHN-DWDCNS  361 (597)
T ss_dssp             EECCSS-CEEHHH
T ss_pred             EEeeCC-CCCChh
Confidence            999999 555533

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.1e-27  Score=221.44  Aligned_cols=289  Identities=20%  Similarity=0.198  Sum_probs=169.9

Q ss_pred             cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (503)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (503)
                      +++.++++++. +.. .+..+  .+++++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~-l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLG-LEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSC-CCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCC-ccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            56667666533 221 12222  246666777666666554445566666666666666555443444555555666666


Q ss_pred             cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh-
Q 010711          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-  314 (503)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-  314 (503)
                      ++|.+... +..+                          .++|+.|++++|.+....+..+..+++|++|++++|.+.. 
T Consensus       108 s~n~l~~l-~~~~--------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A          108 SKNQLKEL-PEKM--------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             CSSCCSBC-CSSC--------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred             CCCcCCcc-Chhh--------------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc
Confidence            55554421 1111                          1345555555554444444445555555555555554432 


Q ss_pred             -hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHh
Q 010711          315 -SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR  393 (503)
Q Consensus       315 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  393 (503)
                       .....+..+++|+.|++++|.++....   ...++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+.
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             CcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence             222334555566666666555543111   1126777777777777766566677777777777777777766655677


Q ss_pred             cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc------CCCCcEEecccCccch--hhHhhc
Q 010711          394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRITS--AGLRHL  465 (503)
Q Consensus       394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~~~--~~~~~l  465 (503)
                      .+++|++|++++|.++. .+..+..+++|+.|++++| .++......|..      .+.|+.|++++|++..  +.+..+
T Consensus       238 ~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             GSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence            77788888888877764 3445667778888888877 677666555543      3678888888887764  445677


Q ss_pred             cCCcccceEEeccCC
Q 010711          466 KPLKNLRSLTLESCK  480 (503)
Q Consensus       466 ~~~~~L~~L~l~~~~  480 (503)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            778888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1e-27  Score=230.02  Aligned_cols=348  Identities=18%  Similarity=0.103  Sum_probs=247.5

Q ss_pred             CCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCC-------------cEEeccCccccc
Q 010711           79 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL-------------VKLDLERCTRIH  145 (503)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~  145 (503)
                      +.++|++|+++++ .+ ...+..++++++|++|++++|. +.+..|..++++.+|             ++|++++|. +.
T Consensus         9 ~~~~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~   84 (454)
T 1jl5_A            9 SNTFLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LS   84 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CS
T ss_pred             ccccchhhhcccC-ch-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cc
Confidence            4578999999986 56 4567789999999999999986 456677777777765             889998864 44


Q ss_pred             CccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcC-CCCCEEEcCCCCCcHHHHHHh
Q 010711          146 GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSL  224 (503)
Q Consensus       146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l  224 (503)
                      ..+..   .++|++|+++++. +.. .+.   ..++|++|+++++.+...     ... ++|++|++++|.+... + .+
T Consensus        85 ~lp~~---~~~L~~L~l~~n~-l~~-lp~---~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~l~~l-p-~~  149 (454)
T 1jl5_A           85 SLPEL---PPHLESLVASCNS-LTE-LPE---LPQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQLEKL-P-EL  149 (454)
T ss_dssp             CCCSC---CTTCSEEECCSSC-CSS-CCC---CCTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSCCSSC-C-CC
T ss_pred             cCCCC---cCCCCEEEccCCc-CCc-ccc---ccCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCCCCCC-c-cc
Confidence            43332   3689999999864 333 222   247899999999887642     222 6899999999988763 3 58


Q ss_pred             hCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCE
Q 010711          225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC  304 (503)
Q Consensus       225 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  304 (503)
                      ..+++|++|++++|.+.. .+.   ..++|++|++++|.+... + .+..+++|+.|++++|.+.+.+    ...++|++
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~  219 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLES  219 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCE
T ss_pred             CCCCCCCEEECCCCcCcc-cCC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccE
Confidence            899999999999998875 222   235899999999988763 3 4788999999999999876422    12358999


Q ss_pred             EecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCcc
Q 010711          305 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI  384 (503)
Q Consensus       305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  384 (503)
                      |++++|.+....  .+..+++|+.|++++|.+....    ...++|++|++++|.+++.+    ..+++|+.|++++|.+
T Consensus       220 L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          220 IVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF  289 (454)
T ss_dssp             EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             EECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCcc
Confidence            999999887432  4788999999999999887521    13589999999999988632    1358999999999988


Q ss_pred             ChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcC-CCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHh
Q 010711          385 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDL-SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR  463 (503)
Q Consensus       385 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  463 (503)
                      ...+    ...++|+.|++++|.+++.     ..+ ++|+.|++++| .++..+.    .+++|+.|++++|.++.++. 
T Consensus       290 ~~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N-~l~~lp~----~~~~L~~L~L~~N~l~~lp~-  354 (454)
T 1jl5_A          290 SGLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPE-  354 (454)
T ss_dssp             SEES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCCC-
T ss_pred             Cccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCC-ccccccc----cCCcCCEEECCCCccccccc-
Confidence            7632    1237899999999998863     233 58999999999 6776332    36899999999999987543 


Q ss_pred             hccCCcccceEEeccCCCCH
Q 010711          464 HLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       464 ~l~~~~~L~~L~l~~~~~~~  483 (503)
                         .+++|++|++++|+++.
T Consensus       355 ---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          355 ---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSS
T ss_pred             ---hhhhccEEECCCCCCCc
Confidence               47899999999998876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=9.2e-28  Score=222.07  Aligned_cols=290  Identities=18%  Similarity=0.193  Sum_probs=170.5

Q ss_pred             cccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEc
Q 010711          156 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL  235 (503)
Q Consensus       156 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  235 (503)
                      .++.++++++. +.. .+..+  .+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            56777777643 222 22222  256777777777766555556666677777777766665544455666666666666


Q ss_pred             cCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChh
Q 010711          236 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS  315 (503)
Q Consensus       236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  315 (503)
                      ++|.+.... ..+.  ++|++|++++|.+.......+..+++|+.|++++|.+...                      ..
T Consensus       110 ~~n~l~~l~-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLVEIP-PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCCSCC-SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCCccC-cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            666555321 1111  4555555555544433333344444555555544443320                      01


Q ss_pred             hHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcC
Q 010711          316 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF  395 (503)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  395 (503)
                      ....+..+ +|+.|++++|.++... .  ...++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~l~-~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTGIP-K--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSSCC-S--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCccC-c--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            12223333 5555555555544311 1  112567777777777766555566677777777777777776665566777


Q ss_pred             CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc------CCCCcEEecccCccc--hhhHhhccC
Q 010711          396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP  467 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~~--~~~~~~l~~  467 (503)
                      ++|++|++++|.++. .+..+..+++|+.|++++| .++...+..+..      .++|+.|++++|++.  ...+..+..
T Consensus       241 ~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~  318 (332)
T 2ft3_A          241 PTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC  318 (332)
T ss_dssp             TTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CCCCEEECCCCcCee-cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence            777777777777764 3445667777888888777 677666555543      356888888888776  455667778


Q ss_pred             CcccceEEeccCC
Q 010711          468 LKNLRSLTLESCK  480 (503)
Q Consensus       468 ~~~L~~L~l~~~~  480 (503)
                      +++|+.+++++|+
T Consensus       319 l~~L~~l~l~~n~  331 (332)
T 2ft3_A          319 VTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCSTTEEC----
T ss_pred             cchhhhhhccccc
Confidence            8888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.1e-26  Score=214.74  Aligned_cols=289  Identities=16%  Similarity=0.169  Sum_probs=192.6

Q ss_pred             CCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEc
Q 010711          132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  211 (503)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  211 (503)
                      ++++++++++ .+...|..+.  +.+++|+++++. +.......+..+++|++|+++++.+....+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCC-CccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            7899999884 3455554443  689999999965 55566667899999999999999998877888999999999999


Q ss_pred             CCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCCh--HHHHHhhCCCCCCEEEccCCCCC
Q 010711          212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  289 (503)
Q Consensus       212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~  289 (503)
                      ++|.+... +..+  .++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.++
T Consensus       108 s~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCcc-Chhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99988643 2222  2789999999999988777788889999999999887753  23345666777777777777655


Q ss_pred             hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711          290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  369 (503)
Q Consensus       290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  369 (503)
                      ..+. .  ..++|++|++                        ++|.++...+..+..+++|++|++++|.+++..+..+.
T Consensus       185 ~l~~-~--~~~~L~~L~l------------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          185 TIPQ-G--LPPSLTELHL------------------------DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             SCCS-S--CCTTCSEEEC------------------------TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCCc-c--ccccCCEEEC------------------------CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence            3211 0  1134444444                        44444443334444555555555555555554444455


Q ss_pred             CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhc------CCCCceeeccCCCCCCh--hhHHHH
Q 010711          370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLTD--KTLELI  441 (503)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~l~~--~~~~~~  441 (503)
                      .+++|+.|++++|.+... +..+..+++|++|++++|.+++.....|..      .+.++.+++++| .+..  ..+..+
T Consensus       238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f  315 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTF  315 (330)
T ss_dssp             GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC-cccccccCcccc
Confidence            566666666666655533 334556666777777776666655444432      256777777777 3432  344566


Q ss_pred             hcCCCCcEEecccCc
Q 010711          442 SGLTGLVSLNVSNSR  456 (503)
Q Consensus       442 ~~l~~L~~L~l~~~~  456 (503)
                      ..+++++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            777778888777763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=7.6e-27  Score=215.91  Aligned_cols=288  Identities=18%  Similarity=0.194  Sum_probs=196.2

Q ss_pred             CCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEc
Q 010711          132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL  211 (503)
Q Consensus       132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  211 (503)
                      ++++++++++. +...|..+  .+.+++|+++++. +....+..+..+++|++|+++++.+....+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            79999999853 55555544  3689999999865 55556678899999999999999999877888999999999999


Q ss_pred             CCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCCh--HHHHHhhCCCCCCEEEccCCCCC
Q 010711          212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG  289 (503)
Q Consensus       212 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~  289 (503)
                      ++|.+... +..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|.++
T Consensus       110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99988743 22222  799999999999987777778999999999999998864  223334444 7777777777655


Q ss_pred             hhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc
Q 010711          290 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT  369 (503)
Q Consensus       290 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  369 (503)
                      ..+. .  -.++                        |+.|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus       186 ~l~~-~--~~~~------------------------L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          186 GIPK-D--LPET------------------------LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCCS-S--SCSS------------------------CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             ccCc-c--ccCC------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            3211 1  1134                        44444444444443333444555666666666665554444555


Q ss_pred             CCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhc------CCCCceeeccCCCCCC--hhhHHHH
Q 010711          370 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI  441 (503)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~l~--~~~~~~~  441 (503)
                      .+++|+.|++++|.+... +..+..+++|+.|++++|.+++.....+..      .+.|+.|++++| .+.  ...+..+
T Consensus       239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~  316 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATF  316 (332)
T ss_dssp             GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGG
T ss_pred             CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC-cccccccCcccc
Confidence            666666666666666643 334566777777777777776655555443      256777888777 444  3455667


Q ss_pred             hcCCCCcEEecccCc
Q 010711          442 SGLTGLVSLNVSNSR  456 (503)
Q Consensus       442 ~~l~~L~~L~l~~~~  456 (503)
                      ..+++|+.+++++|+
T Consensus       317 ~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          317 RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTBCCSTTEEC----
T ss_pred             cccchhhhhhccccc
Confidence            777888888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=6.2e-28  Score=220.60  Aligned_cols=248  Identities=19%  Similarity=0.188  Sum_probs=155.9

Q ss_pred             CCCEEEcCCCCCcH--HHHHHhhCCCCCCEEEccC-CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711          205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (503)
Q Consensus       205 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  281 (503)
                      +++.|+++++.+..  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+            
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p------------  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC------------
Confidence            45556666555543  3344455555555555553 44444444445555555555555554443333            


Q ss_pred             EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCC-CCCEeecCCCCC
Q 010711          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQI  360 (503)
Q Consensus       282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  360 (503)
                                  ..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++ +|++|++++|.+
T Consensus       119 ------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          119 ------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence                        3444455555555555544433344455555566666665555433444455555 677777777766


Q ss_pred             CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHH
Q 010711          361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL  440 (503)
Q Consensus       361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  440 (503)
                      ++..+..+..++ |+.|++++|.+....+..+..+++|+.|++++|.+++..+. +..+++|++|++++| .+++..+..
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~  263 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQG  263 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCGG
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCChH
Confidence            655555566555 77788877777766666677778888888888877754443 666788888888888 777667777


Q ss_pred             HhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCC
Q 010711          441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  480 (503)
Q Consensus       441 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  480 (503)
                      +..+++|+.|++++|+++...|.. ..+++|+.+++++|+
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            888888888888888887655544 678888888888886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.6e-26  Score=212.56  Aligned_cols=254  Identities=19%  Similarity=0.225  Sum_probs=165.6

Q ss_pred             CCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecC
Q 010711          229 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS  308 (503)
Q Consensus       229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  308 (503)
                      +|++|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++......+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44455555444444333344445555555555554444333344455555555555555554444445556666666666


Q ss_pred             CCccChhhH-HHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh
Q 010711          309 DTQVGSSGL-RHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD  386 (503)
Q Consensus       309 ~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  386 (503)
                      +|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            665554332 34556677777777766 3554444556677888888888887777666777788888888888888877


Q ss_pred             HHHHHHhcCCCCCeEEecCCCCChhHHHhh---hcCCCCceeeccCCCCCChh----hHHHHhcCCCCcEEecccCccch
Q 010711          387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHI---KDLSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      .+...+..+++|+.|++++|.+++.....+   ...+.++.++++++ .+...    .+..+.++++|+.|++++|.++.
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            766666778888888888888776433222   23567788888887 66653    34567788999999999998887


Q ss_pred             hhHhhccCCcccceEEeccCCCCH
Q 010711          460 AGLRHLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       460 ~~~~~l~~~~~L~~L~l~~~~~~~  483 (503)
                      ++...+..+++|++|++++|+++.
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccC
Confidence            665556788999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=5.9e-27  Score=214.12  Aligned_cols=248  Identities=17%  Similarity=0.190  Sum_probs=140.0

Q ss_pred             CCCCEEEeecccCCc--hhHHhhhcCCCCCEEEcCC-CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCE
Q 010711          180 TNLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKV  256 (503)
Q Consensus       180 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  256 (503)
                      .+++.|+++++.+.+  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456666666666655  4455666666777777763 5554444555667777777777777776556666777777777


Q ss_pred             EEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCC-CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCC
Q 010711          257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG  335 (503)
Q Consensus       257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  335 (503)
                      |++++|.+....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+....+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            77777766655555566677777777777766544455555565 667777766665544344444443 5555555554


Q ss_pred             CChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHh
Q 010711          336 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH  415 (503)
Q Consensus       336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (503)
                      ++...+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            4433334444555555555555555432222 334455555555555544333444444555555555555444333222


Q ss_pred             hhcCCCCceeeccCC
Q 010711          416 IKDLSSLTLLNLSQN  430 (503)
Q Consensus       416 ~~~~~~L~~L~l~~~  430 (503)
                       ..+++|+.+++++|
T Consensus       288 -~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          288 -GNLQRFDVSAYANN  301 (313)
T ss_dssp             -TTGGGSCGGGTCSS
T ss_pred             -ccccccChHHhcCC
Confidence             33444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.1e-25  Score=207.01  Aligned_cols=258  Identities=22%  Similarity=0.196  Sum_probs=151.7

Q ss_pred             CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (503)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  259 (503)
                      ++|++|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            47788888877777665556777777788887777776654555667777777777777776655555667777777777


Q ss_pred             cCCCCChHHH-HHhhCCCCCCEEEccCC-CCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCC
Q 010711          260 GFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (503)
Q Consensus       260 ~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (503)
                      ++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            7776653322 24556667777777666 344444445556666666666666655544455555566666666666555


Q ss_pred             hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh----HH
Q 010711          338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA----GV  413 (503)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~  413 (503)
                      ......+..+++|++|++++|.+++..+..+.                     .....+.++.++++++.+.+.    .+
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccc---------------------cccccchhhccccccccccCcchhhhH
Confidence            44444444455666666665555442211111                     112234455555555555442    22


Q ss_pred             HhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          414 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       414 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      ..+..+++|+.|++++| .++..+...+.++++|+.|++++|++..
T Consensus       271 ~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          271 KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            33455566666666666 5554444444566666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=1.4e-24  Score=208.65  Aligned_cols=246  Identities=23%  Similarity=0.248  Sum_probs=144.8

Q ss_pred             CCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccC
Q 010711          206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS  285 (503)
Q Consensus       206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  285 (503)
                      ...++..+..+... |..+  .++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            44566666555432 2222  25778888888887776667777778888888887777765556667777777777777


Q ss_pred             CCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711          286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG  364 (503)
Q Consensus       286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  364 (503)
                      |.++......+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+.++++|++|++++|.++.. 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            7776555555666777777777777666555555666666666666653 33332233445556666666666655542 


Q ss_pred             HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711          365 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  444 (503)
Q Consensus       365 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  444 (503)
                       ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++| .++...+..+..+
T Consensus       201 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 -PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             -CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             -cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence             12444555555555555555544444555555555555555555544444555555555555555 4444444444455


Q ss_pred             CCCcEEecccCcc
Q 010711          445 TGLVSLNVSNSRI  457 (503)
Q Consensus       445 ~~L~~L~l~~~~~  457 (503)
                      ++|+.|++++|++
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            5555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=1.7e-24  Score=208.82  Aligned_cols=226  Identities=25%  Similarity=0.296  Sum_probs=131.3

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  307 (503)
                      ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            47888888888887766777778888888888888777655566677777888888777776655555666777777777


Q ss_pred             CCCccChhhHHHhhCCCCCCeeeccCC-CCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccCh
Q 010711          308 SDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD  386 (503)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  386 (503)
                      ++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+..
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence            777666554455566666666666653 33332223344555555555555555442  223344455555555554444


Q ss_pred             HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711          387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (503)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~  456 (503)
                      ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            44444444444555555444444444444444444444444444 4444333344444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.6e-22  Score=190.96  Aligned_cols=257  Identities=19%  Similarity=0.195  Sum_probs=153.9

Q ss_pred             HHhhCCCCCCEEEccCCCCChhhhHh----hhcCCCCCEEEccCCCCC---hHHHH-------HhhCCCCCCEEEccCCC
Q 010711          222 DSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLV-------HLKGLTNLESLNLDSCG  287 (503)
Q Consensus       222 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~~~  287 (503)
                      ..+..+++|++|++++|.+....+..    +..+++|+.|+++++.+.   +..+.       .+..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            34566778888888888877654443    456788888888775332   22222       23567788888888877


Q ss_pred             CCh----hHHHHHhcCCCCCEEecCCCccChhhHHHhh----CC---------CCCCeeeccCCCCChHH-H---HHHhC
Q 010711          288 IGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL---------TNLESINLSFTGISDGS-L---RKLAG  346 (503)
Q Consensus       288 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~~~-~---~~~~~  346 (503)
                      ++.    ..+..+..+++|++|++++|.+.......+.    .+         ++|++|++++|.+++.. +   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            765    3455666777788888877777544333322    22         67777777777665322 2   24556


Q ss_pred             CCCCCEeecCCCCCCHhH----HH-hhcCCCCCCEEEccCCccC----hHHHHHHhcCCCCCeEEecCCCCChhHHH---
Q 010711          347 LSSLKSLNLDARQITDTG----LA-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVK---  414 (503)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---  414 (503)
                      +++|++|++++|.++..+    .. .+..+++|+.|++++|.++    ...+..+..+++|++|++++|.+++.+..   
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            677777777777776432    12 4556677777777777665    22344556666777777777766665332   


Q ss_pred             -hhh--cCCCCceeeccCCCCCCh----hhHHHH-hcCCCCcEEecccCccchhhH--hhc-cCCcccceEEeccC
Q 010711          415 -HIK--DLSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLESC  479 (503)
Q Consensus       415 -~~~--~~~~L~~L~l~~~~~l~~----~~~~~~-~~l~~L~~L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~  479 (503)
                       .+.  .+++|+.|++++| .++.    ..+..+ .++++|+.|++++|+++...+  ..+ ..++.++.+++...
T Consensus       266 ~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence             222  2566677777666 5555    233333 446666666666666665442  222 22444444555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=6.7e-25  Score=200.54  Aligned_cols=230  Identities=22%  Similarity=0.230  Sum_probs=124.8

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHH--HHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  305 (503)
                      +++++|+++++.+.......+..+++|+.|++++|.+....  +..+..+++|+.|++++|.+... +..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence            46666666666665444444556666666666666554221  22333455566666655544321 1123344555555


Q ss_pred             ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (503)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (503)
                      ++++|.+.....                       ...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus       107 ~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A          107 DFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             ECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             ECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            555544433221                       023444555555555555554444444555556666666665554


Q ss_pred             h-HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhh
Q 010711          386 D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRH  464 (503)
Q Consensus       386 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  464 (503)
                      . ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++....+..
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            3 22334455666666666666666555555566666666666666 555554445556666666666666666655555


Q ss_pred             ccCCc-ccceEEeccCCCC
Q 010711          465 LKPLK-NLRSLTLESCKVT  482 (503)
Q Consensus       465 l~~~~-~L~~L~l~~~~~~  482 (503)
                      +..++ +|++|++++|+++
T Consensus       243 ~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEE
T ss_pred             HHhhhccCCEEEccCCCee
Confidence            55553 6666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=3.3e-24  Score=193.74  Aligned_cols=224  Identities=23%  Similarity=0.249  Sum_probs=156.7

Q ss_pred             CEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCC
Q 010711          231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT  310 (503)
Q Consensus       231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  310 (503)
                      +.++.++..+... |.  ...++|+.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4566666665543 22  22467888888888777655556677788888888888777665666777788888888877


Q ss_pred             c-cChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH
Q 010711          311 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA  389 (503)
Q Consensus       311 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  389 (503)
                      . +.......+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 555545566677777777777777766555556677777777777777776555556677777777777777776655


Q ss_pred             HHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          390 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       390 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence            55666777777777777777666666677777777777777 666666666777777777777777655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.2e-24  Score=196.69  Aligned_cols=268  Identities=20%  Similarity=0.212  Sum_probs=194.2

Q ss_pred             CEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCC
Q 010711          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC  286 (503)
Q Consensus       207 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  286 (503)
                      +.++.++..+... +.  .-.+++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSC-CT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccC-Cc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            5567766665543 22  22468888999888888776677888888999999888887665667778888999999888


Q ss_pred             C-CChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH
Q 010711          287 G-IGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL  365 (503)
Q Consensus       287 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  365 (503)
                      . +....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 666656677788889999998888877666677788889999998888876555567788889999998888887666


Q ss_pred             HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC
Q 010711          366 AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT  445 (503)
Q Consensus       366 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~  445 (503)
                      ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+-........+.  .
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~--~  248 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--A  248 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--H
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH--H
Confidence            66778888999999888888777777888888999999988888877777888888999999888322222221111  1


Q ss_pred             CCcEEecccCccchhhHhhccC--CcccceEEeccC
Q 010711          446 GLVSLNVSNSRITSAGLRHLKP--LKNLRSLTLESC  479 (503)
Q Consensus       446 ~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~  479 (503)
                      .++.+..+.+.+.-..|+.+.+  +..++..++.||
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             HHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            1233334445444444444432  445555556665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=7.7e-25  Score=200.71  Aligned_cols=254  Identities=17%  Similarity=0.195  Sum_probs=133.2

Q ss_pred             EeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711          186 QISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (503)
Q Consensus       186 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  265 (503)
                      +++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++|.+.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            334444433333344455667777777776666555566677777777777776654332  566666777777666554


Q ss_pred             hHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHH-
Q 010711          266 DECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL-  344 (503)
Q Consensus       266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-  344 (503)
                      +     +...++|+.|++++|.+....+   ..+++|++|++++|.+.......+..+++|+.|++++|.+....+..+ 
T Consensus        94 ~-----l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           94 E-----LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             E-----EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             c-----ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            3     2233566666666665554322   124556666666665555444444455555555555555554333333 


Q ss_pred             hCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCce
Q 010711          345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL  424 (503)
Q Consensus       345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  424 (503)
                      ..+++|++|++++|.++..  .....+++|+.|++++|.+...++. +..+++|+.|++++|.++.. +..+..+++|+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~  241 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEH  241 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCE
T ss_pred             hccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCE
Confidence            2445555555555555543  1122345555555555555543322 44455555555555555432 233444455555


Q ss_pred             eeccCCCCCC-hhhHHHHhcCCCCcEEeccc
Q 010711          425 LNLSQNCNLT-DKTLELISGLTGLVSLNVSN  454 (503)
Q Consensus       425 L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~  454 (503)
                      |++++| .+. ...+..+..+++|+.+++++
T Consensus       242 L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          242 FDLRGN-GFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             EECTTC-CCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EEccCC-CccCcCHHHHHhccccceEEECCC
Confidence            555555 333 33444445555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=4.8e-24  Score=205.74  Aligned_cols=226  Identities=21%  Similarity=0.216  Sum_probs=195.2

Q ss_pred             CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  283 (503)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  283 (503)
                      ++++.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            58999999999988776677889999999999999998877788889999999999999888666666788999999999


Q ss_pred             cCCCCChhHHHHHhcCCCCCEEecCCC-ccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711          284 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  362 (503)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  362 (503)
                      ++|.+.......+..+++|++|+++++ .+.......+..+++|+.|++++|.++..  ..+..+++|++|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence            999888777777888999999999984 44444445678889999999999988764  246678999999999999998


Q ss_pred             hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            878888999999999999999988878888899999999999999988777778889999999999984

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=5.3e-24  Score=204.69  Aligned_cols=226  Identities=21%  Similarity=0.240  Sum_probs=198.0

Q ss_pred             CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  283 (503)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  283 (503)
                      ++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.......+..+++|+.|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            67999999999988776678889999999999999999887888999999999999999888666666888999999999


Q ss_pred             cCCCCChhHHHHHhcCCCCCEEecCCC-ccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711          284 DSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  362 (503)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  362 (503)
                      ++|.+.......+..+++|++|+++++ .+.......+..+++|+.|++++|.++...  .+..+++|++|++++|.++.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence            999988777778889999999999984 344444556788999999999999887532  36778999999999999998


Q ss_pred             hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|+
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            878888999999999999999998888888899999999999999998877888889999999999984

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=1.1e-24  Score=199.58  Aligned_cols=260  Identities=17%  Similarity=0.164  Sum_probs=180.9

Q ss_pred             CCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEcc
Q 010711          205 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (503)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  284 (503)
                      .++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+  +..+++|+.|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34556666666655544555667789999999998888777788888899999998888765433  6778888888888


Q ss_pred             CCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhH
Q 010711          285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG  364 (503)
Q Consensus       285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  364 (503)
                      +|.+++.     ...++|++|++++|.+.....   ..+++|+.|++++|.++...+..+..+++|++|++++|.++...
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            8866542     245788888888887765432   23567788888877777655555666777788888777777655


Q ss_pred             HHhh-cCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhc
Q 010711          365 LAAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG  443 (503)
Q Consensus       365 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  443 (503)
                      +..+ ..+++|+.|++++|.++..+  ....+++|++|++++|.+++..+ .+..+++|+.|++++| .++.. +..+..
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~l-~~~~~~  235 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLI-EKALRF  235 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEE-CTTCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccch-hhHhhc
Confidence            5444 35677777777777776542  22246777777777777776533 3666777777777777 66653 345666


Q ss_pred             CCCCcEEecccCccc-hhhHhhccCCcccceEEeccC
Q 010711          444 LTGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC  479 (503)
Q Consensus       444 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~  479 (503)
                      +++|+.|++++|++. ...+..+..+++|+.+++++|
T Consensus       236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            777777777777776 445566667777777776644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=8.2e-22  Score=182.78  Aligned_cols=222  Identities=18%  Similarity=0.191  Sum_probs=109.6

Q ss_pred             CCCEEEcCCCCCcHHHHHHhhCC--CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChH-HHHHhhCCCCCCEE
Q 010711          205 KLTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESL  281 (503)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L  281 (503)
                      .++.++++++.+..   ..+..+  ++++.+++.++.+....+. +..+++|+.|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            46677777766653   223333  5677777776665543322 33456666666666655543 44445556666666


Q ss_pred             EccCCCCChhHHHHHhcCCCCCEEecCCC-ccChh-hHHHhhCCCCCCeeeccCC-CCChH-HHHHHhCCC-CCCEeecC
Q 010711          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSS-GLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLS-SLKSLNLD  356 (503)
Q Consensus       282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~  356 (503)
                      ++++|.+++..+..+..+++|++|++++| .+.+. ....+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666655555555555556666666555 34432 2223444555555555555 44443 233344444 55555555


Q ss_pred             CC--CCCH-hHHHhhcCCCCCCEEEccCCc-cChHHHHHHhcCCCCCeEEecCC-CCChhHHHhhhcCCCCceeeccCC
Q 010711          357 AR--QITD-TGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       357 ~~--~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      +|  .+++ ..+..+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.+.....+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            54  3332 122233344444444444444 33333334444444444444444 233332333444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.4e-21  Score=184.49  Aligned_cols=256  Identities=18%  Similarity=0.192  Sum_probs=172.8

Q ss_pred             HhhhcCCCCCEEEcCCCCCcHHHHHH----hhCCCCCCEEEccCCCCC---hhhhH-------hhhcCCCCCEEEccCCC
Q 010711          198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       198 ~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~~~  263 (503)
                      ..+..+++|+.|++++|.+....+..    +..+++|++|++++|.+.   ...+.       .+..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            44567788888888888777654433    556788888888876443   22222       23567888888888887


Q ss_pred             CCh----HHHHHhhCCCCCCEEEccCCCCChhHHHHHhc----C---------CCCCEEecCCCccChhhH----HHhhC
Q 010711          264 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTG----L---------CNLKCLELSDTQVGSSGL----RHLSG  322 (503)
Q Consensus       264 ~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----~---------~~L~~L~l~~~~~~~~~~----~~~~~  322 (503)
                      +..    ..+..+..+++|+.|++++|.++...+..+..    +         ++|++|++++|.+.....    ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            776    35556677888888888888776554444332    3         788888888888764322    34566


Q ss_pred             CCCCCeeeccCCCCChHH----HH-HHhCCCCCCEeecCCCCCC----HhHHHhhcCCCCCCEEEccCCccChHH----H
Q 010711          323 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQIT----DTGLAALTSLTGLTHLDLFGARITDSG----A  389 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~----~  389 (503)
                      +++|+.|++++|.+.+..    .. .+..+++|++|++++|.++    ...+..+..+++|+.|++++|.+....    +
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            788888888888887542    22 4557788888888888886    333456677888888888888887763    3


Q ss_pred             HHHhc--CCCCCeEEecCCCCChh----HHHhh-hcCCCCceeeccCCCCCChhhH--HHH-hcCCCCcEEeccc
Q 010711          390 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELI-SGLTGLVSLNVSN  454 (503)
Q Consensus       390 ~~~~~--~~~L~~L~l~~~~~~~~----~~~~~-~~~~~L~~L~l~~~~~l~~~~~--~~~-~~l~~L~~L~l~~  454 (503)
                      ..+..  +++|+.|++++|.+++.    .+..+ .++++|+.|++++| .++...+  ..+ ..+++++.+++..
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence            34433  78888888888888773    34444 55788888888888 6665542  222 2345555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.7e-21  Score=180.71  Aligned_cols=251  Identities=20%  Similarity=0.203  Sum_probs=191.8

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcC--CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChh-HHHHHhcCCCCCE
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE-GLVNLTGLCNLKC  304 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~  304 (503)
                      ..++.++++++.+..   ..+..+  +.++.++++++.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++
T Consensus        47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            348899999887763   344444  7899999998876654333 45678999999999988765 6667788899999


Q ss_pred             EecCCCccChhhHHHhhCCCCCCeeeccCC-CCChH-HHHHHhCCCCCCEeecCCC-CCCHhH-HHhhcCCC-CCCEEEc
Q 010711          305 LELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDG-SLRKLAGLSSLKSLNLDAR-QITDTG-LAALTSLT-GLTHLDL  379 (503)
Q Consensus       305 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l  379 (503)
                      |++++|.+.+.....+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.. +..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999888777778888999999999998 67764 4455778899999999998 888753 45567888 9999999


Q ss_pred             cCC--ccC-hHHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711          380 FGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (503)
Q Consensus       380 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~  455 (503)
                      ++|  .++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|..+.......+.++++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            998  555 3345566789999999999988 777777788888999999999986565555556778999999999988


Q ss_pred             ccchhhHhhccCCcccceEEeccCCCCHHH
Q 010711          456 RITSAGLRHLKPLKNLRSLTLESCKVTAND  485 (503)
Q Consensus       456 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  485 (503)
                       +.+.....+.  ..+..|++++|.++...
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIA  309 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCcccc
Confidence             5543333332  24666678888877643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.3e-22  Score=187.85  Aligned_cols=251  Identities=19%  Similarity=0.225  Sum_probs=144.9

Q ss_pred             EEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhh----HhhhcCC-CCCEEEccCCCCChHHHHHhhCC-----CCC
Q 010711          209 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TNL  278 (503)
Q Consensus       209 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L  278 (503)
                      +.++++.+....+..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5667777776655555555568888888887776555    5566676 78888888877765544443332     778


Q ss_pred             CEEEccCCCCChhHHHH----HhcC-CCCCEEecCCCccChhhHHHh----hC-CCCCCeeeccCCCCChH----HHHHH
Q 010711          279 ESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRHL----SG-LTNLESINLSFTGISDG----SLRKL  344 (503)
Q Consensus       279 ~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~----~~~~~  344 (503)
                      +.|++++|.+++..+..    +..+ ++|++|++++|.+.......+    .. +++|++|++++|.+++.    ....+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            88888877766544443    3334 677777777777665444332    23 34677777777766532    22334


Q ss_pred             hCCC-CCCEeecCCCCCCHhHHH----hhcCC-CCCCEEEccCCccChHH----HHHHhc-CCCCCeEEecCCCCChhHH
Q 010711          345 AGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDSG----AAYLRN-FKNLRSLEICGGGLTDAGV  413 (503)
Q Consensus       345 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~~~  413 (503)
                      ...+ +|++|++++|.+++.++.    .+..+ ++|+.|++++|.+....    +..+.. .++|++|++++|.+++.+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 677777777666554432    23334 36666666666665521    223333 3466666666666655433


Q ss_pred             H----hhhcCCCCceeeccCCCC---CChhhHH----HHhcCCCCcEEecccCccchh
Q 010711          414 K----HIKDLSSLTLLNLSQNCN---LTDKTLE----LISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       414 ~----~~~~~~~L~~L~l~~~~~---l~~~~~~----~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      .    .+..+++|+.|++++| .   ++.....    .+..+++|+.|++++|++...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            2    2234466666666666 3   2221111    233455566666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=6.6e-23  Score=187.32  Aligned_cols=246  Identities=23%  Similarity=0.258  Sum_probs=138.1

Q ss_pred             EEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHH--HHHHHhCCCCCcEEec
Q 010711           61 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLDL  138 (503)
Q Consensus        61 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l  138 (503)
                      .++.++.+++. .+..+  .++|++|++++| .+.......|+++++|++|++++|.. ...  .+..+..+++|++|++
T Consensus        11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           11 EIRCNSKGLTS-VPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEEC
T ss_pred             EEEcCCCCccc-CCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEEC
Confidence            45555554442 22222  246666666665 44444444456666777777766642 211  1344455667777777


Q ss_pred             cCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH
Q 010711          139 ERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA  218 (503)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  218 (503)
                      ++|. +...+..+..+++|++|+++++..........+..+++|++|+++++.+....+..+..+++|+.|++++|.+..
T Consensus        86 s~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            7643 334445566677777777776543222222455666777777777666655555556666677777777666543


Q ss_pred             -HHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh
Q 010711          219 -ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT  297 (503)
Q Consensus       219 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~  297 (503)
                       ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             2334455666666666666666655555566666666666666655543333445555666666666655544444444


Q ss_pred             cCC-CCCEEecCCCcc
Q 010711          298 GLC-NLKCLELSDTQV  312 (503)
Q Consensus       298 ~~~-~L~~L~l~~~~~  312 (503)
                      .++ +|++|++++|.+
T Consensus       245 ~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCCTTCCEEECTTCCE
T ss_pred             hhhccCCEEEccCCCe
Confidence            442 555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=1.1e-24  Score=199.18  Aligned_cols=254  Identities=20%  Similarity=0.159  Sum_probs=147.8

Q ss_pred             hcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCCh-hhhHhh-------hcCCCCCEEEccCCCCChHHHHHh
Q 010711          201 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF-------SKIGSLKVLNLGFNEITDECLVHL  272 (503)
Q Consensus       201 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l-------~~~~~L~~L~l~~~~~~~~~~~~l  272 (503)
                      +..++|+.++++++.+  ..+..+...  ++.|+++++.+.. ..+..+       ..+++|++|++++|.+.+..+..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3345566666666665  222222221  4444444444321 111111       135556666666555544333322


Q ss_pred             --hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCC
Q 010711          273 --KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL  350 (503)
Q Consensus       273 --~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  350 (503)
                        ..+++|+.|++++|.+.+. +..+..+                   ....+++|++|++++|.+....+..++.+++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence              4455555555555544433 2222222                   00011555555555555554444455566666


Q ss_pred             CEeecCCCCCCHh--HHHhh--cCCCCCCEEEccCCccCh---HHHHHHhcCCCCCeEEecCCCCChhHH-HhhhcCCCC
Q 010711          351 KSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSL  422 (503)
Q Consensus       351 ~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L  422 (503)
                      ++|++++|.+.+.  .+..+  ..+++|+.|++++|.+..   .....+..+++|++|++++|.+++..+ ..+..+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            6777766666543  12233  567778888888877773   333445677888888888888877542 344557889


Q ss_pred             ceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711          423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       423 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  484 (503)
                      +.|++++| .++.. +..+.  ++|+.|++++|+++.. +. +..+++|++|++++|+++..
T Consensus       256 ~~L~Ls~N-~l~~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          256 NSLNLSFT-GLKQV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEECTTS-CCSSC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CEEECCCC-ccChh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            99999988 67743 33332  7899999999998887 33 77889999999999988754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=9e-24  Score=194.10  Aligned_cols=236  Identities=17%  Similarity=0.124  Sum_probs=170.9

Q ss_pred             CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (503)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  305 (503)
                      ..++++.|+++++.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3467888888888877 34555667788888888888776 45555677778888888887766 334556677777777


Q ss_pred             ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (503)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (503)
                      ++++|......+..+      ....+.         ..+..+++|++|++++|.++. .+..+..+++|+.|++++|.+.
T Consensus       156 ~L~~n~~~~~~p~~~------~~~~~~---------~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPL------ASTDAS---------GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCS------EEEC-C---------CCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhH------hhccch---------hhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCC
Confidence            777654433222111      111111         113457788888888887773 3455777888888888888877


Q ss_pred             hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhc
Q 010711          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL  465 (503)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  465 (503)
                      ..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++| .+....+..+.++++|+.|+|++|++....|..+
T Consensus       220 ~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          220 ALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCC-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             cCc-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            653 35778888999999988887777777888899999999988 5666666678889999999999998888888888


Q ss_pred             cCCcccceEEeccCCCC
Q 010711          466 KPLKNLRSLTLESCKVT  482 (503)
Q Consensus       466 ~~~~~L~~L~l~~~~~~  482 (503)
                      ..+++|+.+++..+.+.
T Consensus       298 ~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGSCTTCEEECCGGGSC
T ss_pred             hhccCceEEeCCHHHHH
Confidence            89999999988877543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.3e-22  Score=186.36  Aligned_cols=222  Identities=20%  Similarity=0.204  Sum_probs=125.2

Q ss_pred             cCCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCc
Q 010711           55 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV  134 (503)
Q Consensus        55 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  134 (503)
                      ..++++.|+++++.++ ..+..+.++++|++|++++| .+. ..+..++.+++|++|++++|.. . .+|..+.++++|+
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCC
Confidence            3577888888888887 55666777888888888886 454 3455677788888888888763 3 5566777888888


Q ss_pred             EEeccCcccccCccccccC---------CccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCC
Q 010711          135 KLDLERCTRIHGGLVNLKG---------LMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK  205 (503)
Q Consensus       135 ~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  205 (503)
                      +|++++|......+..+..         +++|++|++++|. +. ..+..+..+++|++|++++|.+... +..+..+++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~  230 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK  230 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCC
Confidence            8888877655555544432         5555555555533 22 2233444555555555555544432 223444455


Q ss_pred             CCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEcc
Q 010711          206 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD  284 (503)
Q Consensus       206 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  284 (503)
                      |+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++++.+.+.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            5555555544433333334444444444444444444444444444444444444444443344444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.2e-21  Score=179.36  Aligned_cols=252  Identities=18%  Similarity=0.214  Sum_probs=195.6

Q ss_pred             EEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH----HHhhCCC-CCCEEEccCCCCChhHHHHHhcC-----CC
Q 010711          232 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN  301 (503)
Q Consensus       232 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~  301 (503)
                      .+.++.+.+....+..+...++|+.|++++|.+.+...    ..+..++ +|+.|++++|.+++..+..+...     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35778888888777777777779999999998887655    6677888 89999999998887666666553     89


Q ss_pred             CCEEecCCCccChhhHH----HhhCC-CCCCeeeccCCCCChHHHHHH----hC-CCCCCEeecCCCCCCHhHH----Hh
Q 010711          302 LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLRKL----AG-LSSLKSLNLDARQITDTGL----AA  367 (503)
Q Consensus       302 L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~  367 (503)
                      |++|++++|.+......    .+..+ ++|+.|++++|.+++..+..+    .. .++|++|++++|.+++.+.    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999998765544    34555 899999999998877655444    34 3699999999999985443    44


Q ss_pred             hcCCC-CCCEEEccCCccChHHHHH----HhcC-CCCCeEEecCCCCChhHH----Hhhhc-CCCCceeeccCCCCCChh
Q 010711          368 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGV----KHIKD-LSSLTLLNLSQNCNLTDK  436 (503)
Q Consensus       368 ~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~l~~~  436 (503)
                      +..++ +|++|++++|.++...+..    +..+ ++|++|++++|.+++.+.    ..+.. .++|+.|++++| .++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~  240 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP  240 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence            45665 9999999999998766544    4455 599999999999987433    34444 469999999999 78775


Q ss_pred             hHH----HHhcCCCCcEEecccCccchhh-------HhhccCCcccceEEeccCCCCHH
Q 010711          437 TLE----LISGLTGLVSLNVSNSRITSAG-------LRHLKPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       437 ~~~----~~~~l~~L~~L~l~~~~~~~~~-------~~~l~~~~~L~~L~l~~~~~~~~  484 (503)
                      ...    .+..+++|+.|++++|.+..+.       ...+..+++|+.|++++|++...
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            543    3456899999999999844332       23567788999999999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=5.8e-23  Score=198.98  Aligned_cols=235  Identities=18%  Similarity=0.170  Sum_probs=150.9

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  307 (503)
                      ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..     ..++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            478888888888887777778888888888888887765433  677788888888887665432     3467777777


Q ss_pred             CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccCh
Q 010711          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITD  386 (503)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  386 (503)
                      ++|.+.....   ..+++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus       107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            7777665432   2346677777777766665555556666777777777766665554443 56666777776666655


Q ss_pred             HHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc-hhhHhhc
Q 010711          387 SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT-SAGLRHL  465 (503)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l  465 (503)
                      .+  ....+++|+.|++++|.+++..+ .+..+++|+.|++++| .++.. |..+..+++|+.|++++|++. ...+..+
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC-cCccc-chhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            42  12246666666666666665433 2555666666666666 55542 334555666666666666665 3334455


Q ss_pred             cCCcccceEEec
Q 010711          466 KPLKNLRSLTLE  477 (503)
Q Consensus       466 ~~~~~L~~L~l~  477 (503)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            556666655554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.1e-23  Score=198.85  Aligned_cols=237  Identities=17%  Similarity=0.202  Sum_probs=195.0

Q ss_pred             cCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711          202 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (503)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  281 (503)
                      .+++|+.|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++|.+.+     +...++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEE
Confidence            34489999999999887666788899999999999999876543  7889999999999998764     2345899999


Q ss_pred             EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCC
Q 010711          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQI  360 (503)
Q Consensus       282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  360 (503)
                      ++++|.+....+   ..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|++|++++|.+
T Consensus       105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            999998876543   2468899999999998887777778889999999999998876666665 689999999999999


Q ss_pred             CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCC-hhhHH
Q 010711          361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT-DKTLE  439 (503)
Q Consensus       361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~  439 (503)
                      ++.  .....+++|+.|++++|.++..++. +..+++|+.|++++|.+++. +..+..+++|+.|++++| .+. ...+.
T Consensus       182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~c~~~~~  256 (487)
T 3oja_A          182 YDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRD  256 (487)
T ss_dssp             CEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CBCHHHHHH
T ss_pred             ccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-CCcCcchHH
Confidence            875  2344689999999999999886554 77899999999999999874 556778899999999999 566 56677


Q ss_pred             HHhcCCCCcEEecc
Q 010711          440 LISGLTGLVSLNVS  453 (503)
Q Consensus       440 ~~~~l~~L~~L~l~  453 (503)
                      .+..++.|+.++++
T Consensus       257 ~~~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhCCCCcEEecc
Confidence            78888888888886

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=4.4e-21  Score=189.42  Aligned_cols=266  Identities=20%  Similarity=0.112  Sum_probs=194.4

Q ss_pred             ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEE
Q 010711          155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  234 (503)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  234 (503)
                      .+++.|+++++. ++. .+..+.  ++|++|++++|.+.....    .+++|+.|++++|.+.... .   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~-L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG-LTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC-CSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCC-C---CCTTCCEEE
T ss_pred             CCCcEEEecCCC-cCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEE
Confidence            468999999865 432 333333  799999999998874332    5789999999999886532 2   678999999


Q ss_pred             ccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh
Q 010711          235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  314 (503)
Q Consensus       235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  314 (503)
                      +++|.+.....    .+++|+.|++++|.++.. +   ..+++|++|++++|.+....    ..+++|+.|++++|.+..
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~l-p---~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-P---VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcC-C---CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence            99998876322    567899999999887752 1   23588999999998776532    145788899998888766


Q ss_pred             hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc
Q 010711          315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  394 (503)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  394 (503)
                      ..    ..+++|+.|++++|.++...    ...++|+.|++++|.++...    ..+++|+.|++++|.++..+    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            43    45678888888888776521    13578888888888877532    23578888888888877643    45


Q ss_pred             CCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhcc
Q 010711          395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK  466 (503)
Q Consensus       395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  466 (503)
                      +++|+.|++++|.++....    .+++|+.|++++| .++.+ |..+.++++|+.|++++|+++...+..+.
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTRL-PESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCSC-CGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCcC-CHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            6788888888888775432    4678888888888 77754 45677888888888888888877666543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=1.1e-23  Score=192.50  Aligned_cols=254  Identities=19%  Similarity=0.187  Sum_probs=153.4

Q ss_pred             ccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcH-HHHH-------HhhCCCCCCEEEccCCCCChhhh
Q 010711          174 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-ACLD-------SLSALGSLFYLNLNRCQLSDDGC  245 (503)
Q Consensus       174 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~-------~l~~l~~L~~L~l~~~~~~~~~~  245 (503)
                      ..++..++|+++++.++.+ . .+..+...  |+.|+++++.+.. ..+.       .+..+++|++|++++|.+....+
T Consensus        37 ~~~~~~~~L~~l~l~~n~l-~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRVDTE-A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEEECTTHHHHCCTT-C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEEccCCCceeEeeccccc-c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            4455667888888888877 2 23333322  7777777776532 1112       22368999999999999987666


Q ss_pred             Hhh--hcCCCCCEEEccCCCCChHHHHHhhCC-----CCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhh--
Q 010711          246 EKF--SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG--  316 (503)
Q Consensus       246 ~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--  316 (503)
                      ..+  ..+++|+.|++++|.+.+. +..+..+     ++|++|++++|.+....+..+..+++|++|++++|.+.+..  
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence            665  7899999999999988765 3333333     78888888888777665566666677777777766654321  


Q ss_pred             HHHh--hCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHH-HHHh
Q 010711          317 LRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA-AYLR  393 (503)
Q Consensus       317 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~  393 (503)
                      +..+  ..+++|+.|++++|.++...                     ......+..+++|+.|++++|.+....+ ..+.
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            1122  44555555555555554211                     1111222344444455554444443221 1223


Q ss_pred             cCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          394 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      .+++|++|++++|.++.. +..+.  ++|+.|++++| .++.. +. +..+++|+.|++++|++++
T Consensus       251 ~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccChh-hhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            345666666666666532 22222  66777777777 66665 22 6677777777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=3.5e-22  Score=179.55  Aligned_cols=205  Identities=21%  Similarity=0.241  Sum_probs=107.3

Q ss_pred             CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  331 (503)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  331 (503)
                      ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+.          
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------   97 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----------   97 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc----------
Confidence            3566666666655544433455555666666666555544444444555555555555554443333344          


Q ss_pred             cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHH-HHHHhcCCCCCeEEecCCCCCh
Q 010711          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSG-AAYLRNFKNLRSLEICGGGLTD  410 (503)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  410 (503)
                                    .+++|++|++++|.+.......+..+++|+.|++++|.+.... +..+..+++|++|++++|.+++
T Consensus        98 --------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           98 --------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             --------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             --------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence                          4445555555554444433333445555555555555554421 3445555566666666665555


Q ss_pred             hHHHhhhcCCCCc----eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          411 AGVKHIKDLSSLT----LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       411 ~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ..+..+..+++|+    .|++++| .++...+..+. ..+|+.|++++|.++..++..+..+++|+.|++++|+++
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCHHHhhhhhhccccceeeecCCC-cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            4444444444444    5566666 45544333332 235666666666666555555556666666666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=1.1e-20  Score=186.72  Aligned_cols=268  Identities=21%  Similarity=0.115  Sum_probs=212.2

Q ss_pred             CCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEE
Q 010711          131 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN  210 (503)
Q Consensus       131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  210 (503)
                      .++++|+++++. +...|..+.  ++|++|++++|. ++... .   .+++|++|++++|.++....    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLP-A---LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCC-C---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCC-C---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            469999999854 556666554  799999999975 44322 2   57899999999998875332    678999999


Q ss_pred             cCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh
Q 010711          211 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD  290 (503)
Q Consensus       211 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  290 (503)
                      +++|.+.....    .+++|+.|++++|.+.... .   .+++|+.|++++|.+....    ..+++|+.|.+++|.++.
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence            99998876321    5689999999999887632 2   3589999999999887521    246789999999998876


Q ss_pred             hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcC
Q 010711          291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS  370 (503)
Q Consensus       291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  370 (503)
                      ..    ..+++|+.|++++|.+....    ...++|+.|.+.+|.++...    ..+++|++|++++|.++..+    ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence            43    45789999999999887532    23578999999999887532    24589999999999998743    46


Q ss_pred             CCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711          371 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  444 (503)
Q Consensus       371 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  444 (503)
                      +++|+.|++++|.++..+.    .+++|+.|++++|.++.. +..+..+++|+.|++++| .++...+..+..+
T Consensus       240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence            7899999999999886543    578999999999999854 667889999999999999 7888888776644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=8.3e-22  Score=176.19  Aligned_cols=201  Identities=17%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711          253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (503)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (503)
                      ..+.++++++.++. .+..  -.++++.|+++++.+....+..+..+++|++|+++++.+.......+..          
T Consensus        17 ~~~~l~~~~~~l~~-ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~----------   83 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE----------   83 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred             CCCEEEccCCCCCc-cCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence            35566666555543 1111  1245666666666555444444555555555555555544333333344          


Q ss_pred             CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                                    +++|++|++++|.+....+..+..+++|+.|++++|.+...++..+..+++|++|++++|.+....
T Consensus        84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence                          444555555444444433334444555555555555554444444455555555555555555444


Q ss_pred             HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711          413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      ...+..+++|+.|++++| .++...+..+.++++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus       150 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            444455555555555555 45554444455555555555555555555444455555566666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=1.8e-21  Score=174.80  Aligned_cols=206  Identities=24%  Similarity=0.202  Sum_probs=141.8

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  307 (503)
                      +++++|+++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47999999999998877778889999999999999988766667888999999999999998877778889999999999


Q ss_pred             CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (503)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  387 (503)
                      ++|.+.......+..+++|+.|++++|.+....                       .+..+..+++|+.|++++|.++..
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----------------------LPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----------------------CCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceec-----------------------CchhhccCCCCCEEECCCCCCCcC
Confidence            998876554434555566666666655544321                       123344445555555555554443


Q ss_pred             HHHHHhcCCCCC----eEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          388 GAAYLRNFKNLR----SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       388 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      .+..+..+++|+    .|++++|.+.+..+..+. ..+|+.|++++| .++..++..+..+++|+.|++++|++.
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence            333333333343    566666666654433333 236777777777 566655555666777777777777655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=4.2e-21  Score=171.58  Aligned_cols=200  Identities=19%  Similarity=0.223  Sum_probs=133.3

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  307 (503)
                      .+.+.++++++.+... |..+  .++++.|+++++.+....+..+..+++|++|++++|.++......+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3578899998888753 3322  368999999999988766667888999999999999888766667788999999999


Q ss_pred             CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (503)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  387 (503)
                      ++|.+.......+..+++|+.|++++|.++...+..+..+++|++|++++|.++......+..+++|+.|++++|.+...
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            99988766555566677777777777766654444455566666666666665554444445555555555555555544


Q ss_pred             HHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          388 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       388 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      ++..+..+++|++|++++|.++......+..+++|+.|++++|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            4444444555555555555554443334444455555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=6.6e-20  Score=166.83  Aligned_cols=195  Identities=28%  Similarity=0.384  Sum_probs=150.6

Q ss_pred             hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (503)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (503)
                      ..+++|+.|+++++.+....  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            45678889999888776532  46778899999999888876554  77888899999988887664  35777888888


Q ss_pred             eeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCC
Q 010711          329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (503)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (503)
                      |++++|.++...  .+..+++|++|++++|.++...+  +..+++|+.|++++|.+....+  +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            888888877643  37788888888888888876543  6778888888888888776544  77788888888888888


Q ss_pred             ChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       409 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      ++..+  +..+++|+.|++++| .++...  .+..+++|+.|++++|+++..
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             CcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeecC
Confidence            76543  677888888888888 677655  367788888888888887664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=1.6e-20  Score=168.02  Aligned_cols=197  Identities=21%  Similarity=0.207  Sum_probs=116.6

Q ss_pred             CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEe
Q 010711          274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL  353 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  353 (503)
                      .+++|+.|.+.++.+...  ..+..+++|++|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            356677777777765532  2355667777777777666543  245566666666666666655444445566666666


Q ss_pred             ecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCC
Q 010711          354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (503)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  433 (503)
                      ++++|.++...+..+..+++|+.|++++|.++..++..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cC
Confidence            66666666554444556666666666666666554444555666666666666666554444555666666666666 55


Q ss_pred             ChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          434 TDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       434 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +...+..+..+++|+.|++++|++..       .+++|+.+++..|.++
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  235 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTG
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCC
Confidence            55555555566666666666665442       3445555555554433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1e-20  Score=172.78  Aligned_cols=231  Identities=17%  Similarity=0.077  Sum_probs=139.2

Q ss_pred             CCCCEEEccCCCCChhhhHh---hhcCCCCCEEEccCCCCChHHHHHh--hCCCCCCEEEccCCCCChhHHHHHhcCCCC
Q 010711          228 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNL  302 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  302 (503)
                      ..++.+.+.++.+.......   +..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+....+         
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~---------  134 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS---------  134 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence            34666666666554422211   1123446666666655544333333  445555555555554442100         


Q ss_pred             CEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEE
Q 010711          303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD  378 (503)
Q Consensus       303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~  378 (503)
                                 ......+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+...    ..+..+++|++|+
T Consensus       135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~  203 (310)
T 4glp_A          135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA  203 (310)
T ss_dssp             -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred             -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence                       0011222345555555555555554444445566667777777766554211    1124677788888


Q ss_pred             ccCCccChHHHH---HHhcCCCCCeEEecCCCCChhHHHhhhcC---CCCceeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711          379 LFGARITDSGAA---YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV  452 (503)
Q Consensus       379 l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l  452 (503)
                      +++|.++..+..   .+..+++|++|++++|.+.+..+..+..+   ++|++|++++| .++.. +..+  .++|+.|++
T Consensus       204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~--~~~L~~L~L  279 (310)
T 4glp_A          204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQV-PKGL--PAKLRVLDL  279 (310)
T ss_dssp             CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSC-CSCC--CSCCSCEEC
T ss_pred             CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCch-hhhh--cCCCCEEEC
Confidence            888877643322   34678888889998888887655555555   68999999998 77754 3333  378999999


Q ss_pred             ccCccchhhHhhccCCcccceEEeccCCCCHH
Q 010711          453 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       453 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  484 (503)
                      ++|+++..+  .+..+++|+.|++++|+++..
T Consensus       280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred             CCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence            999988752  256789999999999988754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1e-20  Score=169.14  Aligned_cols=211  Identities=20%  Similarity=0.196  Sum_probs=172.4

Q ss_pred             hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711          248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  327 (503)
Q Consensus       248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  327 (503)
                      ...+++|+.|+++++.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.......+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            44678899999998877642  2467789999999999988764  3677889999999999988877666678889999


Q ss_pred             eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (503)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (503)
                      .|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            99999998887666667888999999999999887766667889999999999999888777777889999999999999


Q ss_pred             CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  470 (503)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  470 (503)
                      +++..+..+..+++|+.|++++| .+.       +.+++|+.++++.|.++...|..+..++.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            98877777888899999999998 343       35778899999988888776766655444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.3e-20  Score=168.03  Aligned_cols=201  Identities=20%  Similarity=0.154  Sum_probs=98.1

Q ss_pred             hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711          248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  327 (503)
Q Consensus       248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  327 (503)
                      ++.+++++.++++++.++.. +..  -.++++.|++++|.++...+..+..+++|++|++++|.+.....  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            34566777777777666532 111  12566777777776665555566666666777666666554322  13455555


Q ss_pred             eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (503)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (503)
                      .|++++|.+... +..+..+++|++|++++|.++...+..|..+++|+.|++++|++...++..+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            555555554421 1223344455555555554444333344444444444444444444433334444444444444444


Q ss_pred             CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc
Q 010711          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR  456 (503)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~  456 (503)
                      ++......+..+++|+.|++++| .++.. +..+..+++|+.|++++|+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~i-p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQEN-SLYTI-PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCC-cCCcc-ChhhcccccCCeEEeCCCC
Confidence            44433333344444444444444 33322 1222233344444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=3.7e-19  Score=161.87  Aligned_cols=193  Identities=28%  Similarity=0.399  Sum_probs=155.4

Q ss_pred             CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (503)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  305 (503)
                      .+++|+.|++.++.+...  +.+..+++|+.|++++|.+....+  +..+++|+.|++++|.+....  .+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence            456889999998887753  357788999999999988876444  788899999999999877642  57788899999


Q ss_pred             ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (503)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (503)
                      ++++|.+....  .+..+++|+.|++++|.++...+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.
T Consensus       113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            99998887643  37888999999999998876443  7788999999999998887543  778899999999999888


Q ss_pred             hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                      ...+  +..+++|++|++++|.+.+..  .+..+++|+.|++++| .++.
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence            7654  778899999999999888765  3778899999999988 4544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=9e-21  Score=166.31  Aligned_cols=198  Identities=17%  Similarity=0.170  Sum_probs=125.6

Q ss_pred             CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCc-cChhhHHHhhCCCCCCeeeccC-CCCChHHHHHHhCCCCCCEee
Q 010711          277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN  354 (503)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  354 (503)
                      +++.|+++++.++...+..+..+++|++|++++|. +.......+..+++|++|++++ +.++...+..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444333344445555555555553 4433333445555666666655 555544444455666677777


Q ss_pred             cCCCCCCHhHHHhhcCCCCCC---EEEccCC-ccChHHHHHHhcCCCCC-eEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711          355 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  429 (503)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  429 (503)
                      +++|.++..+  .+..+++|+   .|++++| .+...++..+..+++|+ +|++++|.++......+.. ++|+.|++++
T Consensus       112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            7666665532  255666666   7777777 77766666677788888 8888888777554445544 7888888888


Q ss_pred             CCCCChhhHHHHhcC-CCCcEEecccCccchhhHhhccCCcccceEEeccCC
Q 010711          430 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  480 (503)
Q Consensus       430 ~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  480 (503)
                      |..++...+..|.++ ++|+.|++++|+++.+++.   .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            844777667777788 8888888888888776443   56788888888763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.8e-19  Score=164.54  Aligned_cols=230  Identities=17%  Similarity=0.098  Sum_probs=141.3

Q ss_pred             CCCCCEEEcCCCCCcHHHHHH---hhCCCCCCEEEccCCCCChhhhHhh--hcCCCCCEEEccCCCCChHH----HHHhh
Q 010711          203 LQKLTLLNLEGCPVTAACLDS---LSALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDEC----LVHLK  273 (503)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~----~~~l~  273 (503)
                      ...++.+.+.++.+.......   ...+++|++|++++|.+....+..+  ..+++|++|++++|.+....    ...+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            346788999998876543222   2245779999999999987777776  78999999999999887521    13345


Q ss_pred             CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhH----HHhhCCCCCCeeeccCCCCChHHH--H-HHhC
Q 010711          274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL----RHLSGLTNLESINLSFTGISDGSL--R-KLAG  346 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~  346 (503)
                      .+++|+.|++++|.+....+..+..+++|++|++++|.+.....    ..+..+++|++|++++|.++....  . .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            67888888888887766666666677777777777776543211    112345566666666665553221  1 2344


Q ss_pred             CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711          347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (503)
Q Consensus       347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  426 (503)
                      +++|++|++++|.+.+..+..+..+                     ..+++|++|++++|.++.. +..+.  ++|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~---------------------~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~  278 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRC---------------------MWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLD  278 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSC---------------------CCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhc---------------------cCcCcCCEEECCCCCCCch-hhhhc--CCCCEEE
Confidence            5555555555555554322222222                     1124566666666655532 22222  5667777


Q ss_pred             ccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       427 l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      +++| .++..+  .+..+++|+.|++++|++++
T Consensus       279 Ls~N-~l~~~~--~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          279 LSSN-RLNRAP--QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSC-CCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred             CCCC-cCCCCc--hhhhCCCccEEECcCCCCCC
Confidence            7776 555532  24566777777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.2e-19  Score=160.28  Aligned_cols=157  Identities=24%  Similarity=0.307  Sum_probs=83.1

Q ss_pred             CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                      .++.|+++++.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++..++..+..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44444444444444333334445555555555555554444444455555555555555554444444555555555555


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +|.++...+..+..+++|+.|++++| .++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            55555544444455555555555555 555544445555556666666666555554445555556666666665554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.4e-19  Score=162.88  Aligned_cols=201  Identities=24%  Similarity=0.232  Sum_probs=166.3

Q ss_pred             hhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCC
Q 010711          224 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK  303 (503)
Q Consensus       224 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  303 (503)
                      +..+++++.+++.++.+... +..+  .+.++.|++++|.+....+..+..+++|+.|++++|.++.....  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            45678899999999888753 3222  36899999999998877677788899999999999988765432  6788999


Q ss_pred             EEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCc
Q 010711          304 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR  383 (503)
Q Consensus       304 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  383 (503)
                      +|++++|.+... +..+..+++|+.|++++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            999999988744 3456778999999999999887666678889999999999999988777778889999999999999


Q ss_pred             cChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       384 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      ++..++..+..+++|+.|++++|.++.. +..+...++|+.+++++|+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence            9988777788899999999999999864 4455567899999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=5.9e-20  Score=161.10  Aligned_cols=194  Identities=21%  Similarity=0.220  Sum_probs=166.0

Q ss_pred             CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCC-CChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCCCCCCEE
Q 010711          300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG-ISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHL  377 (503)
Q Consensus       300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L  377 (503)
                      +++++|+++++.+.......+..+++|+.|++++|. ++...+..+..+++|++|++++ |.++...+..|..+++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            489999999999988777778899999999999996 8776666788999999999998 99998777788899999999


Q ss_pred             EccCCccChHHHHHHhcCCCCC---eEEecCC-CCChhHHHhhhcCCCCc-eeeccCCCCCChhhHHHHhcCCCCcEEec
Q 010711          378 DLFGARITDSGAAYLRNFKNLR---SLEICGG-GLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNV  452 (503)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~l~~L~~L~l  452 (503)
                      ++++|.++..+.  +..+++|+   .|++++| .++...+..+..+++|+ .|++++| .++..+...+.. ++|+.|++
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEc
Confidence            999998887543  77888888   9999999 89887777889999999 9999999 788766666666 89999999


Q ss_pred             ccCc-cchhhHhhccCC-cccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          453 SNSR-ITSAGLRHLKPL-KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       453 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      ++|+ +..+.+..+..+ ++|+.|++++|+++....     ..+++|+.|.+
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l  233 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIA  233 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEEC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-----hHhccCceeec
Confidence            9995 998878888899 999999999999875432     25667777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=9e-19  Score=154.64  Aligned_cols=157  Identities=22%  Similarity=0.300  Sum_probs=81.9

Q ss_pred             CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEcc
Q 010711          301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (503)
Q Consensus       301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  380 (503)
                      +++.|+++++.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            34444444444433333334444444444444444443333334445555555555555554444444555555555555


Q ss_pred             CCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      +|.++..++..+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            55555544444555566666666666655544445555566666666666 555555555555666666666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1.9e-17  Score=149.16  Aligned_cols=174  Identities=25%  Similarity=0.314  Sum_probs=124.6

Q ss_pred             CCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEe
Q 010711          274 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL  353 (503)
Q Consensus       274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  353 (503)
                      .+++|+.|++++|.+...  ..+..+++|++|++++|.+.....  +..+++|+.|++++|.+...  ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            456788888888877654  236677888888888887766543  67778888888888877653  236677888888


Q ss_pred             ecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCC
Q 010711          354 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL  433 (503)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  433 (503)
                      ++++|.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++| .+
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i  190 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HI  190 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cC
Confidence            8888777763  4566777888888888777765  456777778888888777776543  667777888888777 66


Q ss_pred             ChhhHHHHhcCCCCcEEecccCccchhhH
Q 010711          434 TDKTLELISGLTGLVSLNVSNSRITSAGL  462 (503)
Q Consensus       434 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  462 (503)
                      +...  .+..+++|+.|++++|++...+.
T Consensus       191 ~~l~--~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCCh--hhccCCCCCEEECcCCcccCCcc
Confidence            6643  36677778888887777666433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=2.4e-17  Score=139.57  Aligned_cols=153  Identities=21%  Similarity=0.300  Sum_probs=106.0

Q ss_pred             CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      +++|+.|+++++.+.+..  .+..+++|++|++++|.++..  ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345666666666555322  355667777777777655542  3566777777777777777765556677778888888


Q ss_pred             ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++|.+++..+..+..+++|+.|++++|..++...  .+.++++|+.|++++|.+.+..  .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            88888877667777778888888888883366543  5777888888888888887753  6677888888888888765


Q ss_pred             H
Q 010711          483 A  483 (503)
Q Consensus       483 ~  483 (503)
                      .
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=3.8e-17  Score=147.18  Aligned_cols=168  Identities=29%  Similarity=0.366  Sum_probs=111.9

Q ss_pred             hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (503)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (503)
                      ..+++|+.|+++++.+...  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            3456677777777766543  235666777777777776665443  66677777777777766553  23666777777


Q ss_pred             eeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCC
Q 010711          329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (503)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (503)
                      |++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            77777766653  3456677777777777777664  456667777777777777766543  66677777777777777


Q ss_pred             ChhHHHhhhcCCCCceeeccCC
Q 010711          409 TDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       409 ~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      ++..  .+..+++|+.|++++|
T Consensus       191 ~~l~--~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CBCG--GGTTCTTCSEEEEEEE
T ss_pred             CCCh--hhccCCCCCEEECcCC
Confidence            6642  3666777777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.9e-16  Score=156.31  Aligned_cols=186  Identities=25%  Similarity=0.304  Sum_probs=137.8

Q ss_pred             hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCE
Q 010711          273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS  352 (503)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  352 (503)
                      ..+++|+.|.+++|.+....  .+..+++|+.|++++|.+.....  +..+++|+.|++++|.+...  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            34677888888888776542  47778888888888888776543  77788888888888877753  35677888888


Q ss_pred             eecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCC
Q 010711          353 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN  432 (503)
Q Consensus       353 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  432 (503)
                      |++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++| .
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~  186 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H  186 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence            88888888763  4567788888888888887765  456778888888888888877554  777888888888888 6


Q ss_pred             CChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccce
Q 010711          433 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRS  473 (503)
Q Consensus       433 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  473 (503)
                      ++...  .+..+++|+.|+|++|++...+...+..+..+..
T Consensus       187 i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~  225 (605)
T 1m9s_A          187 ISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT  225 (605)
T ss_dssp             CCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECC
T ss_pred             CCCCh--HHccCCCCCEEEccCCcCcCCcccccccEEeccc
Confidence            77652  5777888888888888877654444444433333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.2e-16  Score=157.79  Aligned_cols=173  Identities=28%  Similarity=0.359  Sum_probs=135.0

Q ss_pred             hhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCC
Q 010711          248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE  327 (503)
Q Consensus       248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  327 (503)
                      +..+++|+.|+++++.+....  .+..+++|+.|+|++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence            346678888888888776432  46778888899998888776554  77888889999888887653  2577788888


Q ss_pred             eeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCC
Q 010711          328 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG  407 (503)
Q Consensus       328 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  407 (503)
                      .|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999888887763  3477888899999988888875  567788889999998888887655  7788889999998888


Q ss_pred             CChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711          408 LTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                      +.+.  ..+..+++|+.|+|++| .+..
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N-~l~~  211 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQ-ECLN  211 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred             CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence            8774  35777888888988888 4444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=2e-16  Score=133.79  Aligned_cols=152  Identities=22%  Similarity=0.312  Sum_probs=107.8

Q ss_pred             CCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEE
Q 010711          299 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD  378 (503)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  378 (503)
                      +++|++|+++++.+....  .+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            345566666665554322  355566677777776655432  2466778888888888887776666777888888888


Q ss_pred             ccCCccChHHHHHHhcCCCCCeEEecCCC-CChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          379 LFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       379 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                      +++|.+....+..+..+++|++|++++|. +++..  .+..+++|+.|++++| .++...  .+..+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCccc
Confidence            88888887667778888888888888887 66542  5778888999999888 677644  677888999999998886


Q ss_pred             ch
Q 010711          458 TS  459 (503)
Q Consensus       458 ~~  459 (503)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=2.7e-17  Score=151.35  Aligned_cols=287  Identities=16%  Similarity=0.074  Sum_probs=178.1

Q ss_pred             CCCCCEEEcCCCCCcHHHHHHhhC-CCCCCEEEccCCCCC--hhhhHhhhcCCCCCEEEccCCCCChHHHHHhhC-----
Q 010711          203 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLS--DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-----  274 (503)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-----  274 (503)
                      +++++.|.+++.- .......+.. +++|+.|+++++.+.  .....   .++.+..+....+.+.   ...|..     
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence            4567888887753 2222344554 788999999988776  21111   1112333333333222   233556     


Q ss_pred             ---CCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCC----CCChHHHHHHhCC
Q 010711          275 ---LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT----GISDGSLRKLAGL  347 (503)
Q Consensus       275 ---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~~~~~~~~~~~~  347 (503)
                         +++|+.+.+.. .+......+|..+++|+.+++.++.+.......|..+.++..+.....    ........++..+
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               78888888887 677666777888888888888888766655666666666665555431    0111111223345


Q ss_pred             CCCC-EeecCCCCC-CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCcee
Q 010711          348 SSLK-SLNLDARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  425 (503)
Q Consensus       348 ~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  425 (503)
                      ..|+ .+.+..... ............+++.+.+.+.-...........+++|+.+++++|.++..+..+|..+++|+.+
T Consensus       176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            5555 444443221 11111111134566666666543222222222347888888888887877777778888888888


Q ss_pred             eccCCCCCChhhHHHHhcCCCCc-EEecccCccchhhHhhccCCcccceEEeccCCCCHHHHHHHHhcCCCCcccccC
Q 010711          426 NLSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP  502 (503)
Q Consensus       426 ~l~~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~~  502 (503)
                      ++.+|  ++.+...+|.++++|+ .+++.+ .+..+...+|.+|++|+.++++++.++..+-..+.  .|++|+.+..
T Consensus       256 ~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly~  328 (329)
T 3sb4_A          256 KLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIYK  328 (329)
T ss_dssp             ECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEEC
T ss_pred             ECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhcc
Confidence            88776  7777777788888888 888877 77777777888888888888888888777766666  7888887753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=5.6e-17  Score=151.14  Aligned_cols=156  Identities=22%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             CCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          326 LESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       326 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                      ++.|++++|.++......+. .+++|++|++++|.++...+..|..+++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44455555544443333333 45555555555555555444455555666666666665555544455556666666666


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH---hcCCCCcEEecccCccchhhHhhccCCcc--cceEEeccC
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLESC  479 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~  479 (503)
                      +|.+....+..|..+++|+.|++++| .++..+...+   ..+++|+.|+|++|++..+.+..+..++.  ++.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            66666555555666666666666666 5555444444   34666666666666666655555555555  366666666


Q ss_pred             CCC
Q 010711          480 KVT  482 (503)
Q Consensus       480 ~~~  482 (503)
                      ++.
T Consensus       200 ~~~  202 (361)
T 2xot_A          200 PLE  202 (361)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=3.9e-17  Score=150.28  Aligned_cols=284  Identities=13%  Similarity=0.124  Sum_probs=200.9

Q ss_pred             CCCCCEEEeecccCCchhHHhhhc-CCCCCEEEcCCCCCc--HHHHHHhhCCCCCCEEEccCCCCChhhhHhhhc-----
Q 010711          179 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVT--AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK-----  250 (503)
Q Consensus       179 l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~-----  250 (503)
                      +++++.|.+++. +.......+.. +++|+.|++++|.+.  ....   ..++.++.+....+.+   ...+|..     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhccccccc
Confidence            567899999875 34344555665 899999999999876  1111   1122233444444432   2355667     


Q ss_pred             ---CCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc----ChhhHHHhhCC
Q 010711          251 ---IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSGL  323 (503)
Q Consensus       251 ---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~~~~~  323 (503)
                         +++|+.+++.. .+.......|..|++|+.+.+.++.+......+|..+.++..+.......    .......+..+
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~  175 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG  175 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence               89999999987 66665666788899999999998877766667777776666666544211    11112234455


Q ss_pred             CCCC-eeeccCCCCChHHHHHHh---CCCCCCEeecCCCCCCHhHHHhhc-CCCCCCEEEccCCccChHHHHHHhcCCCC
Q 010711          324 TNLE-SINLSFTGISDGSLRKLA---GLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNL  398 (503)
Q Consensus       324 ~~L~-~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  398 (503)
                      ..|+ .+.+....  ......+.   ...+++.+.+.+. +.......+. .+++|+.+++++|.++..+..+|..|++|
T Consensus       176 ~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          176 EPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             CCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            6666 45554332  12222222   3567778877765 3333333333 58999999999999998888899999999


Q ss_pred             CeEEecCCCCChhHHHhhhcCCCCc-eeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEe
Q 010711          399 RSLEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL  476 (503)
Q Consensus       399 ~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  476 (503)
                      +++++.+| +...+..+|..+++|+ .+++.+  .++.+...+|.+|++|+.++++++.+..+....|.++++|+.++.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999987 7777888999999999 999988  488888889999999999999999999998899999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=2.3e-16  Score=134.93  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=107.6

Q ss_pred             CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      .++|+.|+++++.++......+..+++|++|++++|.++......+..+++|++|++++|.+...++..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            35778888888777665555566777888888887777765555566777788888877777766555566777777777


Q ss_pred             ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++|.+++..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++..       .+++|++|+++.|.++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence            7777777665555667777777777777 6666665566777777777777776542       4566777776666555


Q ss_pred             H
Q 010711          483 A  483 (503)
Q Consensus       483 ~  483 (503)
                      .
T Consensus       179 g  179 (208)
T 2o6s_A          179 G  179 (208)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-16  Score=137.01  Aligned_cols=162  Identities=18%  Similarity=0.169  Sum_probs=102.1

Q ss_pred             CCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEcc
Q 010711          301 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF  380 (503)
Q Consensus       301 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  380 (503)
                      ++++|+++++.+.......+..+++|++|++++|.++......+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            44555555554444333344555556666665555554433445566677777777766665544556667777777777


Q ss_pred             CCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          381 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       381 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      +|.+...++..+..+++|++|++++|.+++.....+..+++|+.|++++| .+.       +.+++|+.|+++.|.++..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCce
Confidence            77776665555667777777777777777665555677778888888877 332       2466777888887777766


Q ss_pred             hHhhccCCcc
Q 010711          461 GLRHLKPLKN  470 (503)
Q Consensus       461 ~~~~l~~~~~  470 (503)
                      .|..+..++.
T Consensus       181 ip~~~~~l~~  190 (208)
T 2o6s_A          181 VRNSAGSVAP  190 (208)
T ss_dssp             BBCTTSSBCT
T ss_pred             eeccCccccC
Confidence            6655554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=1.6e-16  Score=136.66  Aligned_cols=132  Identities=20%  Similarity=0.258  Sum_probs=68.2

Q ss_pred             CCCEeecCCCCCCHhHH-HhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          349 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      .+++|++++|.++...+ ..+..+++|+.|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34445555544444321 22344555555555555555444444555555555555555555544444555555555555


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      ++| .++...+..+.++++|+.|++++|.++...+..+..+++|+.|++++|++
T Consensus       113 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          113 RSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            555 45554444555555555555555555555455555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=2.4e-16  Score=135.58  Aligned_cols=132  Identities=19%  Similarity=0.334  Sum_probs=62.8

Q ss_pred             CCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeecc
Q 010711          349 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS  428 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  428 (503)
                      +++.|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++......|..+++|+.|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            34444444444444333334444444444444444444434444444455555555554444433344444555555555


Q ss_pred             CCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711          429 QNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       429 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      +| .++...+..|.++++|+.|++++|.+..+.+..+..+++|++|++++|++
T Consensus       113 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          113 AN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            55 44444444444555555555555555544444444455555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=3.8e-16  Score=138.36  Aligned_cols=169  Identities=23%  Similarity=0.288  Sum_probs=122.8

Q ss_pred             CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecC
Q 010711          277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  356 (503)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  356 (503)
                      ++..+.+.++.+.+..  .+..+++|+.|+++++.+....  .+..+++|+.|++++|.+++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3445566666665433  3556788888888888776543  56777888888888888776544  7788888888888


Q ss_pred             CCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChh
Q 010711          357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  436 (503)
Q Consensus       357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  436 (503)
                      +|.+++..  .+.. ++|+.|++++|.++..  ..+..+++|+.|++++|.+++..  .+..+++|+.|++++| .++..
T Consensus        94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~~  165 (263)
T 1xeu_A           94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITNT  165 (263)
T ss_dssp             SSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCBC
T ss_pred             CCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcch
Confidence            88877632  2333 7888888888887765  24677888888888888887752  5677788888888888 67665


Q ss_pred             hHHHHhcCCCCcEEecccCccchhh
Q 010711          437 TLELISGLTGLVSLNVSNSRITSAG  461 (503)
Q Consensus       437 ~~~~~~~l~~L~~L~l~~~~~~~~~  461 (503)
                        ..+..+++|+.|++++|++...+
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             --HHhccCCCCCEEeCCCCcccCCc
Confidence              45677888888888888776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=134.11  Aligned_cols=185  Identities=22%  Similarity=0.280  Sum_probs=133.1

Q ss_pred             CCCCCEEecCCCccChhhHHHhh-----CCCCCCeeeccCCCCChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhhc---
Q 010711          299 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT---  369 (503)
Q Consensus       299 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~---  369 (503)
                      .+.|+.|++++|.+.......+.     .+++|+.|++++|.+++.....+. .+++|++|++++|.+++.+...+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46789999999988876554433     236899999999998876665544 467899999999999887665542   


Q ss_pred             --CCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCCCCChhHH----HhhhcCCCCceeeccCCCCCChhhHH
Q 010711          370 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDKTLE  439 (503)
Q Consensus       370 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~  439 (503)
                        ..++|+.|++++|.+++.....    +..+++|++|++++|.+++.+.    ..+...++|+.|++++| .++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence              4688999999999887755443    3678889999999998887663    34456688999999998 78775443


Q ss_pred             ----HHhcCCCCcEEecccCccchhhHhhccCC---c--ccceEE--eccCCCCHH
Q 010711          440 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN  484 (503)
Q Consensus       440 ----~~~~l~~L~~L~l~~~~~~~~~~~~l~~~---~--~L~~L~--l~~~~~~~~  484 (503)
                          .+...++|+.|+|++|.+++.+...+...   .  .|+.+.  +.++.+++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence                34467889999999999888776555332   2  166776  667776655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=1e-17  Score=155.47  Aligned_cols=239  Identities=14%  Similarity=0.070  Sum_probs=164.8

Q ss_pred             CEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCCh-hHHHHHhcCCCCCE-EecC
Q 010711          231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTGLCNLKC-LELS  308 (503)
Q Consensus       231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~-L~l~  308 (503)
                      +.++-++++++.. |..+  .+++++|++++|.++......+..+++|+.|++++|.+.+ ....+|..++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4566666666643 3333  3578999999998886555667889999999999987643 34456677777775 4455


Q ss_pred             CCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCC-CCCCEEEccCCccCh
Q 010711          309 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSL-TGLTHLDLFGARITD  386 (503)
Q Consensus       309 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  386 (503)
                      .+.+.......+..+++|+.|++++|.+.......+....++..+++.+ +.+.......+..+ ..++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            5677666666778889999999998877654433344456677777755 55665544555554 367888999988887


Q ss_pred             HHHHHHhcCCCCCeEEecC-CCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCc-cchhhHhh
Q 010711          387 SGAAYLRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR-ITSAGLRH  464 (503)
Q Consensus       387 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~  464 (503)
                      .++..+ ...+|+++.+.+ |.++......|..+++|+.|++++| +++..+...   +.+|+.|.+.++. +... | .
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~---~~~L~~L~~l~~~~l~~l-P-~  241 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG---LENLKKLRARSTYNLKKL-P-T  241 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS---CTTCCEEECTTCTTCCCC-C-C
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh---hccchHhhhccCCCcCcC-C-C
Confidence            655444 346788888875 5666666667788889999999988 777765433   5566666666553 3333 3 4


Q ss_pred             ccCCcccceEEeccC
Q 010711          465 LKPLKNLRSLTLESC  479 (503)
Q Consensus       465 l~~~~~L~~L~l~~~  479 (503)
                      +..+++|+.+++..+
T Consensus       242 l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          242 LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTCCSCCEEECSCH
T ss_pred             chhCcChhhCcCCCC
Confidence            667888888888653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=4.3e-16  Score=134.01  Aligned_cols=132  Identities=21%  Similarity=0.313  Sum_probs=76.7

Q ss_pred             CCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEec
Q 010711          325 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC  404 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  404 (503)
                      +++.|++++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|.++..++..|..+++|+.|+++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            45555555555444333344455556666665555555444555556666666666666555544445556666666666


Q ss_pred             CCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          405 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                      +|.+.+..+..|..+++|+.|++++| .++...+..+..+++|+.|++++|++
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            66666555555666666666666666 55555555566666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=1.2e-15  Score=132.22  Aligned_cols=133  Identities=22%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      ++|++|++++|.++...+..+..+++|+.|++++|.+...++..+..+++|+.|++++|.++......+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            34444444444444433333444444444444444444433333444444555555544444443334444455555555


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ++| .++. .+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus       120 s~N-~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCN-KLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSS-CCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCC-cccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            554 3442 2233344555555555555555444444444555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=6e-16  Score=144.16  Aligned_cols=173  Identities=17%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh-cCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccC
Q 010711          255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF  333 (503)
Q Consensus       255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  333 (503)
                      +.++.+++.+.. .+..  -.+.++.|++++|.++......+. .+++|++|++++|.+.......+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            455665555443 1111  123456666666665554444444 455555555555555444434444455555555555


Q ss_pred             CCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH---hcCCCCCeEEecCCCCCh
Q 010711          334 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD  410 (503)
Q Consensus       334 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~  410 (503)
                      |.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...+...+   ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            54444333334444455555555554444333444444444444444444444333222   234444444444444444


Q ss_pred             hHHHhhhcCCC--CceeeccCC
Q 010711          411 AGVKHIKDLSS--LTLLNLSQN  430 (503)
Q Consensus       411 ~~~~~~~~~~~--L~~L~l~~~  430 (503)
                      .....+..++.  ++.|++++|
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSS
T ss_pred             cCHHHhhhccHhhcceEEecCC
Confidence            33333333333  234444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=1e-15  Score=131.74  Aligned_cols=133  Identities=20%  Similarity=0.288  Sum_probs=85.7

Q ss_pred             CCCeeeccCCCCChHHH-HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711          325 NLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  403 (503)
Q Consensus       325 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  403 (503)
                      .++.|++++|.++...+ ..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34555555555544321 22455666666666666666655555666677777777777666665556666777777777


Q ss_pred             cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ++|.+.+..+..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            777776665666666777777777777 666666666667777777777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=2.4e-15  Score=146.64  Aligned_cols=187  Identities=16%  Similarity=0.132  Sum_probs=115.7

Q ss_pred             CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeec
Q 010711          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL  331 (503)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  331 (503)
                      .+++.|+++++.+.+ .+..+  +++|+.|++++|.++..+    ..+++|++|++++|.+.....  +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            378888888887764 22222  367888888888776433    446778888888777665322  322  7777777


Q ss_pred             cCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh
Q 010711          332 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (503)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (503)
                      ++|.++... .   .+++|+.|++++|.++..+.    .+++|+.|++++|.++..+.  +.  ++|+.|++++|.++..
T Consensus       128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred             CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence            777666522 2   56777777777777765322    45677777777777666433  32  6777777777776643


Q ss_pred             HHHhhhcCCCC-------ceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccC
Q 010711          412 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP  467 (503)
Q Consensus       412 ~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  467 (503)
                      ..  +..  +|       +.|++++| .++.+ |..+..+++|+.|++++|+++...+..+..
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC--CC----------CCEEEECCSS-CCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh--HHH--hhhcccccceEEecCCC-cceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            22  322  45       77777776 56653 334445677777777777776665554433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=8.2e-16  Score=136.17  Aligned_cols=167  Identities=23%  Similarity=0.339  Sum_probs=123.6

Q ss_pred             CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711          253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (503)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (503)
                      ++..++++.+.+.+..  .+..+++|+.|++++|.+....  .+..+++|++|++++|.+.....  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3445556666555432  3456778888888888776543  57778888888888888776544  7788888888888


Q ss_pred             CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                      +|.++...  .+.. ++|+.|++++|.+++.  ..+..+++|+.|++++|+++...  .+..+++|+.|++++|.+.+. 
T Consensus        94 ~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence            88776532  1233 7888888888888774  35778888888888888887763  577888888888888888775 


Q ss_pred             HHhhhcCCCCceeeccCCCCCCh
Q 010711          413 VKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       413 ~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                       ..+..+++|+.|++++| .+..
T Consensus       166 -~~l~~l~~L~~L~l~~N-~~~~  186 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQ-KCVN  186 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEE-EEEC
T ss_pred             -HHhccCCCCCEEeCCCC-cccC
Confidence             56777888888888888 4444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.54  E-value=7.3e-14  Score=129.69  Aligned_cols=185  Identities=23%  Similarity=0.360  Sum_probs=139.6

Q ss_pred             CCCCCEEEccCCCCChhHHHHHhcC-----CCCCEEecCCCccChhhHHHh-hCCCCCCeeeccCCCCChHHHHHHh---
Q 010711          275 LTNLESLNLDSCGIGDEGLVNLTGL-----CNLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA---  345 (503)
Q Consensus       275 ~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---  345 (503)
                      .++|+.|++++|.++......+...     ++|++|++++|.+.+.....+ ..+++|+.|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999987766555433     689999999999887655444 3456899999999999887766653   


Q ss_pred             --CCCCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccChHH----HHHHhcCCCCCeEEecCCCCChhHHHh
Q 010711          346 --GLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH  415 (503)
Q Consensus       346 --~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~  415 (503)
                        ..++|++|++++|.+++.+...    +..+++|++|++++|.+.+.+    ...+...++|++|++++|.+++.+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              4688999999999998765443    367899999999999988766    445567889999999999998876554


Q ss_pred             h----hcCCCCceeeccCCCCCChhhHHHHhcCC--C---CcEEe--cccCccchh
Q 010711          416 I----KDLSSLTLLNLSQNCNLTDKTLELISGLT--G---LVSLN--VSNSRITSA  460 (503)
Q Consensus       416 ~----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~--~---L~~L~--l~~~~~~~~  460 (503)
                      +    ...++|+.|++++| .++......+..+.  .   |+.+.  +..+.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            4    45689999999999 78887777766542  2   67777  666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=3.2e-15  Score=129.55  Aligned_cols=133  Identities=27%  Similarity=0.284  Sum_probs=88.9

Q ss_pred             CCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEe
Q 010711          324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI  403 (503)
Q Consensus       324 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  403 (503)
                      ++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++..++..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            55666666666665544455566666777777766666554455566777777777777766665555666777777777


Q ss_pred             cCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          404 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ++|.+... +..+..+++|+.|++++| .++...+..+..+++|+.|++++|++.
T Consensus       120 s~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            77777643 445566777777777777 666666666677777777777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=3.2e-15  Score=122.99  Aligned_cols=132  Identities=24%  Similarity=0.248  Sum_probs=82.5

Q ss_pred             CCCCEeecCCCCCC-HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711          348 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (503)
Q Consensus       348 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  426 (503)
                      ++|+.|++++|.++ +..+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666554 22233345556666666666666554  4455666777777777766664455555567777777


Q ss_pred             ccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEeccCCCC
Q 010711          427 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       427 l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++| .++... +..+..+++|+.|++++|+++...+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777 566543 2556667777777777777766544   45667777777777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=1.7e-15  Score=140.62  Aligned_cols=220  Identities=18%  Similarity=0.133  Sum_probs=99.4

Q ss_pred             CCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCc-cccccCCccccEe
Q 010711           82 NLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG-LVNLKGLMKLESL  160 (503)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L  160 (503)
                      ++++|+|++| .++.....+|+.+++|++|++++|.......+.+|.++++++++...++..+... +..+..+++|++|
T Consensus        31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4555555543 3444333444555555555555544222222233444554444333222222222 2344555555555


Q ss_pred             eccCCcCCCccccccccCCCCCCEEEeec-ccCCchhHHhhhcC-CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccC-
Q 010711          161 NIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGL-QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-  237 (503)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-  237 (503)
                      +++++. +.......+....++..+++.+ +.+.......+..+ ..++.|++++|.+..... ......+++.+.+.+ 
T Consensus       110 ~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTC
T ss_pred             cccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-hhccccchhHHhhccC
Confidence            555432 2222222233334444555533 23333333333333 245556666665544322 222334566666653 


Q ss_pred             CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCC-CCChhHHHHHhcCCCCCEEecCC
Q 010711          238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSD  309 (503)
Q Consensus       238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~  309 (503)
                      +.+.......|..+++|+.|++++|.++....   ..+.+|+.|.+.++ .+... + .+..+++|+.+++..
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~l~~l-P-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYNLKKL-P-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTTCCCC-C-CTTTCCSCCEEECSC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCCcCcC-C-CchhCcChhhCcCCC
Confidence            34443334455666666666666666553222   22445555555444 22221 1 245566777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.52  E-value=2.1e-15  Score=142.43  Aligned_cols=331  Identities=15%  Similarity=0.138  Sum_probs=163.6

Q ss_pred             hhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCcccccc
Q 010711           73 GLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLK  152 (503)
Q Consensus        73 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  152 (503)
                      ...+|.+|.+|+.+.+..  .+...+..+|..|.+|+.+++..+  +......+|..|.+|+.+.+... ........+.
T Consensus        63 g~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           63 GYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             CTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             HHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            345567777777777764  355566667777777777777654  33344556667777776665541 1122223344


Q ss_pred             CCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCE
Q 010711          153 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY  232 (503)
Q Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  232 (503)
                      .+..++......   ........+.++++|+.+.+..+. .......|.++.+|+.+.+..+ +.......+.++..|+.
T Consensus       138 ~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          138 GCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             cccccccccCcc---ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            443333322222   222233455666666666665432 2223344555666666665443 11111233444455554


Q ss_pred             EEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCcc
Q 010711          233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV  312 (503)
Q Consensus       233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  312 (503)
                      +.+..+...  ..........|+.+.+                        ... ........+..+..++.+.+..+..
T Consensus       213 i~~~~~~~~--i~~~~~~~~~l~~i~i------------------------p~~-~~~i~~~~f~~~~~l~~~~~~~~~~  265 (394)
T 4fs7_A          213 MEFPNSLYY--LGDFALSKTGVKNIII------------------------PDS-FTELGKSVFYGCTDLESISIQNNKL  265 (394)
T ss_dssp             CCCCTTCCE--ECTTTTTTCCCCEEEE------------------------CTT-CCEECSSTTTTCSSCCEEEECCTTC
T ss_pred             eecCCCceE--eehhhcccCCCceEEE------------------------CCC-ceecccccccccccceeEEcCCCcc
Confidence            444332111  0011112233444443                        322 1111222333444444444433211


Q ss_pred             ChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHH
Q 010711          313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL  392 (503)
Q Consensus       313 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  392 (503)
                       ......+..++.++.+......+.+   ..+..+.+|+.+.+..+ ++..+..+|.+|.+|+.+.+..+ ++..+..+|
T Consensus       266 -~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  339 (394)
T 4fs7_A          266 -RIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF  339 (394)
T ss_dssp             -EECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred             -eeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence             1112234444555555444332221   23445566666666443 33333455666667777666543 444445566


Q ss_pred             hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEE
Q 010711          393 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSL  450 (503)
Q Consensus       393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L  450 (503)
                      ..|.+|+.+.+..+ ++..+..+|.+|++|+.+++..+  ++.. ...|.++++|+.+
T Consensus       340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          340 RGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-GGGBCTTCEEEEE
T ss_pred             cCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-hheecCCCCCcEE
Confidence            67777777777654 55555667777777777777654  3332 2356666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=6e-15  Score=143.88  Aligned_cols=188  Identities=21%  Similarity=0.136  Sum_probs=143.4

Q ss_pred             CCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEec
Q 010711          228 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL  307 (503)
Q Consensus       228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  307 (503)
                      .+++.|+++++.+.. .+..+  +++|+.|++++|.+.. .+   ..+++|+.|++++|.++..+.  +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            389999999998876 33333  3789999999998874 33   457899999999998876433  433  8999999


Q ss_pred             CCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChH
Q 010711          308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS  387 (503)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  387 (503)
                      ++|.+.....    .+++|+.|++++|.++... .   .+++|++|++++|.++..+.  +.  ++|+.|++++|.++..
T Consensus       128 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          128 DNNQLTMLPE----LPALLEYINADNNQLTMLP-E---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             CSSCCSCCCC----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred             CCCcCCCCCC----cCccccEEeCCCCccCcCC-C---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence            9998876332    5789999999999887632 2   57899999999999887433  44  8999999999988865


Q ss_pred             HHHHHhcCCCC-------CeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC
Q 010711          388 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL  444 (503)
Q Consensus       388 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  444 (503)
                      +.  +..  +|       +.|++++|.++.. +..+..+++|+.|++++| .++...+..+..+
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQ  253 (571)
T ss_dssp             CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHH
T ss_pred             hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHh
Confidence            43  322  56       9999999999864 555666899999999999 8888888777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=8.5e-15  Score=117.77  Aligned_cols=127  Identities=25%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             CCCCEeecCCCCCC-HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711          348 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (503)
Q Consensus       348 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  426 (503)
                      ++++.|++++|.++ +..+..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444443 11222233444444444444444433  2334444444444444444443333334444444444


Q ss_pred             ccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhH---hhccCCcccceEEec
Q 010711          427 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE  477 (503)
Q Consensus       427 l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~  477 (503)
                      +++| .++... +..+..+++|+.|++++|+++...+   ..+..+++|+.|+++
T Consensus        95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4444 344321 2344444555555555554444333   234444555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=2.4e-15  Score=142.01  Aligned_cols=336  Identities=16%  Similarity=0.169  Sum_probs=209.8

Q ss_pred             ecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEeccCcccccCccccccCCccccEeeccCCcCCCccc
Q 010711           93 QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSD  172 (503)
Q Consensus        93 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  172 (503)
                      .++.++..+|..|.+|+.+.+..+  +......+|.+|.+|+.+++..+ ........+..++.|+.+.+..  .+....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--~l~~i~  132 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--MLKSIG  132 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC--ceeeec
Confidence            355566778888999999999754  44555677888888888888652 2222334566677777766653  233333


Q ss_pred             cccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCC
Q 010711          173 MKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIG  252 (503)
Q Consensus       173 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~  252 (503)
                      ...+..+..+ ...+.. .........|.++++|+.+.+..+.                         .......|..+.
T Consensus       133 ~~aF~~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-------------------------~~I~~~~F~~c~  185 (394)
T 4fs7_A          133 VEAFKGCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDSM-------------------------ETLHNGLFSGCG  185 (394)
T ss_dssp             TTTTTTCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTTC-------------------------CEECTTTTTTCT
T ss_pred             ceeeeccccc-ccccCc-cccccchhhhcccCCCcEEecCCcc-------------------------ceeccccccCCC
Confidence            3444444322 222211 1111122334455555555554321                         112223344445


Q ss_pred             CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711          253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (503)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (503)
                      +|+.+.+..+ +.......+..+..|+.+.+...... ... ......+|+.+.+... ........+..+..++.+.+.
T Consensus       186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC
T ss_pred             CceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcC
Confidence            5555554432 22122233455666666665544111 111 1223567888887653 223334456788999999987


Q ss_pred             CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                      .+. .......+..++.++.+......+..   ..+..+.+|+.+.+..+ ++..+..+|..|.+|+.+++.++ ++..+
T Consensus       262 ~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          262 NNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             CTT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             CCc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence            653 22233456788999999887765443   46778999999999765 55566678899999999999754 67777


Q ss_pred             HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceE
Q 010711          413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL  474 (503)
Q Consensus       413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  474 (503)
                      ..+|.+|.+|+.+.+..+  ++.+...+|.+|++|+.+++..+ +... ...+.+|++|+.+
T Consensus       336 ~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            788999999999999875  77777789999999999999754 3333 3568889988875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=7e-15  Score=137.87  Aligned_cols=263  Identities=12%  Similarity=0.120  Sum_probs=151.3

Q ss_pred             CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (503)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  259 (503)
                      ..++.+.+... +.......|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+......+|..+++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            45555555432 222333344443 4666665543 22222233333 2455555543 333333344444455555555


Q ss_pred             cCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH
Q 010711          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  339 (503)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  339 (503)
                      ..+                        .+......+|. +.+|+.+.+..+ +.......|..|++|+.+.+..+ +...
T Consensus       188 ~~n------------------------~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I  240 (401)
T 4fdw_A          188 SKT------------------------KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI  240 (401)
T ss_dssp             TTS------------------------CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred             CCC------------------------cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence            444                        33333333333 344555555422 33333344555555666655542 3333


Q ss_pred             HHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC-----hHHHHHHhcCCCCCeEEecCCCCChhHHH
Q 010711          340 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT-----DSGAAYLRNFKNLRSLEICGGGLTDAGVK  414 (503)
Q Consensus       340 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  414 (503)
                      ...+|.+ .+|+.+.+. +.++..+..+|..|++|+.+.+.++...     ..+..+|..|++|+.+.+.+ .+...+..
T Consensus       241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~  317 (401)
T 4fdw_A          241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG  317 (401)
T ss_dssp             CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred             ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence            3334444 567777763 3444444566777777777777666443     34456777888888888874 46666777


Q ss_pred             hhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc-ccceEEeccCC
Q 010711          415 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCK  480 (503)
Q Consensus       415 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~  480 (503)
                      +|.+|++|+.+.|.++  ++.+...+|.++ +|+.+++.+|.........+..++ +++.|++-.+.
T Consensus       318 aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            8888888998888664  777777788888 899999998877776666777774 68888887754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=4.8e-16  Score=152.48  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             CCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711          374 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (503)
Q Consensus       374 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  453 (503)
                      |+.|++++|.++..+ . +..+++|+.|++++|.++. .+..++.+++|+.|++++| .++..+  .+.++++|+.|+++
T Consensus       443 L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCCCc-C-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECC
Confidence            444444444444432 1 4444555555555554442 2334444555555555555 444422  44445555555555


Q ss_pred             cCccchhh-HhhccCCcccceEEeccCCCC
Q 010711          454 NSRITSAG-LRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       454 ~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +|.++... |..+..+++|+.|++++|+++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            55555443 444445555555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=3e-14  Score=114.55  Aligned_cols=128  Identities=20%  Similarity=0.233  Sum_probs=89.3

Q ss_pred             CCCCeeeccCCCCC-hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          324 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       324 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      ++|+.|++++|.+. ...+..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666554 22233345667777777777777664  5566777888888888877775566666788888888


Q ss_pred             ecCCCCChh-HHHhhhcCCCCceeeccCCCCCChhhH---HHHhcCCCCcEEeccc
Q 010711          403 ICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSN  454 (503)
Q Consensus       403 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~  454 (503)
                      +++|.+++. .+..+..+++|+.|++++| .++...+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            888888774 3466777888888888888 6666554   5677888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.2e-14  Score=119.55  Aligned_cols=135  Identities=21%  Similarity=0.202  Sum_probs=103.3

Q ss_pred             CCCCCeeeccCCCCC-hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeE
Q 010711          323 LTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  401 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  401 (503)
                      .++|+.|++++|.+. ...+..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356666666666655 12233345677888888888877765  566788889999999988887556667779999999


Q ss_pred             EecCCCCChhH-HHhhhcCCCCceeeccCCCCCChhhH---HHHhcCCCCcEEecccCccchh
Q 010711          402 EICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       402 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      ++++|.+++.. +..+..+++|+.|++++| .++...+   ..+..+++|+.|++++|.+.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999988753 367788899999999999 6776655   5788899999999999987664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=8.3e-16  Score=150.83  Aligned_cols=197  Identities=18%  Similarity=0.161  Sum_probs=152.3

Q ss_pred             hCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCc-------------cChhhHHHhhCCCCCCeee-ccCCCCCh
Q 010711          273 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------VGSSGLRHLSGLTNLESIN-LSFTGISD  338 (503)
Q Consensus       273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~  338 (503)
                      ..+++|+.|+++++.+. ..|..++.+++|+.|++.++.             .....+..+..+++|+.|+ ++.+.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45789999999998775 557788889999999986653             2333345566677788887 55443322


Q ss_pred             HHHH-----HHhC--CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChh
Q 010711          339 GSLR-----KLAG--LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA  411 (503)
Q Consensus       339 ~~~~-----~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  411 (503)
                      ....     .+..  ...|+.|++++|.+++.+  .+..+++|+.|++++|.++.. |..+..+++|+.|++++|.+++.
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC
Confidence            1111     1111  246999999999998853  388999999999999999855 56889999999999999999985


Q ss_pred             HHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhHh---hccCCcccceEEe
Q 010711          412 GVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR---HLKPLKNLRSLTL  476 (503)
Q Consensus       412 ~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l  476 (503)
                       + .+..+++|+.|++++| .++... |..+.++++|+.|++++|+++..++.   .+..+|+|+.|++
T Consensus       502 -p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 -D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             3 7889999999999999 888876 88899999999999999999886542   2345888988864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=3.6e-14  Score=133.06  Aligned_cols=268  Identities=9%  Similarity=0.095  Sum_probs=135.1

Q ss_pred             ccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEE
Q 010711          155 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN  234 (503)
Q Consensus       155 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  234 (503)
                      ..++.+.+..  .++......+.++ +|+.+.+..+ +.......|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus       113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4555555542  2333344445543 5666666543 333334444443 466666654 33333334566667777777


Q ss_pred             ccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccCh
Q 010711          235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS  314 (503)
Q Consensus       235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  314 (503)
                      +..+.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. ++|+.+.+.+ .+..
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence            766666554444554 456666666533 33333344556666666666543 33333334433 4555555532 2222


Q ss_pred             hhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhc
Q 010711          315 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN  394 (503)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  394 (503)
                      .....|..|++|+.+.+.++....                   +.....+..+|..|++|+.+.+.+ .++..+..+|..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~  321 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFND-------------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG  321 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred             EChhHhhCCCCCCEEEeCCccccC-------------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence            223344444455555444432220                   000022234455555566555553 244444455566


Q ss_pred             CCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCC-CCcEEecccCc
Q 010711          395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSR  456 (503)
Q Consensus       395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~~L~l~~~~  456 (503)
                      |++|+.+.+..+ ++.....+|..+ +|+.+.+.+| .........|.+++ +++.|.+..+.
T Consensus       322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence            666666666443 444445566666 6666666666 44444444555553 56666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=3.3e-14  Score=119.44  Aligned_cols=109  Identities=22%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             CCCEEEccCCccChHHHH-HHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711          373 GLTHLDLFGARITDSGAA-YLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN  451 (503)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~  451 (503)
                      +++.|++++|.+....+. .+..+++|++|++++|.+++..+..+..+++|+.|++++| .++...+..+.++++|+.|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence            444444444444433221 2344455555555555554444444444555555555555 44444444444555555555


Q ss_pred             cccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++|.++...+..+..+++|++|++++|+++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5555555544444555555555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=6.9e-14  Score=115.82  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             CCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhH-HHHhcCCCCcEEe
Q 010711          373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL-ELISGLTGLVSLN  451 (503)
Q Consensus       373 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~  451 (503)
                      +|+.|++++|.++..  ..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+...+. ..+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEE
Confidence            444444444444332  23334444444444444444433233344455555555555 3433221 2344555555555


Q ss_pred             cccCccchhhHh---hccCCcccceEEeccCCCC
Q 010711          452 VSNSRITSAGLR---HLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       452 l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++|++...+..   .+..+++|+.|++++|...
T Consensus       120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            555555443221   2445555555555555433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.3e-13  Score=115.66  Aligned_cols=108  Identities=21%  Similarity=0.267  Sum_probs=62.8

Q ss_pred             CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711          372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN  451 (503)
Q Consensus       372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~  451 (503)
                      ++|+.|++++|.+...+ ..+..+++|+.|++++|.++...+..|..+++|+.|++++| .++...+..|.++++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence            35555555555555432 34555566666666666665555555555666666666666 55555555556666666666


Q ss_pred             cccCccchhhHhhccCCcccceEEeccCCC
Q 010711          452 VSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      +++|.+..+.+..+..+++|+.|++++|++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            666666655555555566666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=2.1e-13  Score=113.08  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             CCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEe
Q 010711          372 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN  451 (503)
Q Consensus       372 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~  451 (503)
                      ++|+.|++++|.+...++..+..+++|++|++++|.++...+..+..+++|+.|++++| .++...+..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence            34555555555444443334444555555555555555444444455555555555555 45554444455555566666


Q ss_pred             cccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          452 VSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       452 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +++|.+..+.+..+..+++|++|++++|+++
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            6655555544444455556666666666544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=7.4e-15  Score=124.28  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=102.3

Q ss_pred             HHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCC
Q 010711          343 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  422 (503)
Q Consensus       343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  422 (503)
                      .+..+++|++|++++|.++...  .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++..  .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence            5677888888888888777643  666778888888888887754 345566788999999999888743  57778899


Q ss_pred             ceeeccCCCCCChhhH-HHHhcCCCCcEEecccCccchhhHh----------hccCCcccceEEeccCCCCH
Q 010711          423 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       423 ~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~~~~  483 (503)
                      +.|++++| .++.... ..+..+++|+.|++++|++....+.          .+..+++|+.|+  +++++.
T Consensus       118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999998 7776543 5788899999999999988766443          367788999886  666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=2.4e-13  Score=112.57  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=102.3

Q ss_pred             hCCCCCCeeeccCCCCChHHHHHHhC-CCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCC
Q 010711          321 SGLTNLESINLSFTGISDGSLRKLAG-LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR  399 (503)
Q Consensus       321 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  399 (503)
                      ..+++|+.|++++|.+... + .+.. .++|+.|++++|.+++.  ..+..+++|+.|++++|.+...++..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3456777777777766643 2 2333 34888888888888774  5677888999999999988877655668899999


Q ss_pred             eEEecCCCCChhHH-HhhhcCCCCceeeccCCCCCChhhHH---HHhcCCCCcEEecccCccchh
Q 010711          400 SLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       400 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      .|++++|.+..... ..+..+++|+.|++++| .++..+..   .+..+++|+.|++++|...+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            99999999876442 36778899999999999 66654433   578899999999999987664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=3.6e-14  Score=119.99  Aligned_cols=152  Identities=23%  Similarity=0.230  Sum_probs=115.3

Q ss_pred             HhCCCCCCEeecCCCCCCHhH------HHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhh
Q 010711          344 LAGLSSLKSLNLDARQITDTG------LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK  417 (503)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  417 (503)
                      +...+.++.+++..+.+.+..      +..+..+++|+.|++++|.+...+  .+..+++|+.|++++|.++.. +..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhh
Confidence            344444444444444333322      236778999999999999988854  788899999999999998853 44566


Q ss_pred             cCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhH-hhccCCcccceEEeccCCCCHHH--------HHH
Q 010711          418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTAND--------IKR  488 (503)
Q Consensus       418 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--------~~~  488 (503)
                      .+++|+.|++++| .++...  .+..+++|+.|++++|.+..... ..+..+++|++|++++|+++...        ...
T Consensus        91 ~~~~L~~L~L~~N-~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           91 VADTLEELWISYN-QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             HHHHCSEEEEEEE-ECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             cCCcCCEEECcCC-cCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence            6799999999999 788754  68889999999999999998654 67889999999999999875542        222


Q ss_pred             HHhcCCCCccccc
Q 010711          489 LQSRDLPNLVSFR  501 (503)
Q Consensus       489 ~~~~~~~~L~~l~  501 (503)
                      .....+|+|+.|+
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence            2234888998875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=1.9e-13  Score=114.72  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             CCCEeecCCCCCCHhHHH-hhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          349 SLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      ++++|++++|.+....+. .+..+++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            455555555544443322 2445555555555555555544444555555555555555555544444555555555555


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ++| .++...+..+..+++|+.|++++|++.
T Consensus       110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          110 YDN-QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            555 555554555555555666666555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1e-12  Score=108.98  Aligned_cols=112  Identities=21%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      ++|++|++++|.++...+..+..+++|+.|++++|.++..++..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            56667777666666554455566677777777777766655555667777777777777777665556667777777777


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      ++| .++..++..+..+++|+.|++++|++...
T Consensus       108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            777 66666655566777788888887776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.29  E-value=7.4e-13  Score=111.04  Aligned_cols=108  Identities=24%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      +++++|++++|.++... ..+..+++|+.|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            34555555555554322 34445555555555555555544445555556666666666555555555555566666666


Q ss_pred             cCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          428 SQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       428 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                      ++| .++...+..|..+++|+.|++++|++
T Consensus       110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGN-DISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence            666 55555544555566666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.22  E-value=6.8e-12  Score=118.30  Aligned_cols=129  Identities=21%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (503)
Q Consensus       295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  374 (503)
                      +|..+.+|+.+.+.+.. .......+..++.|+.+.+.. .+......+|.+|.+|+.+.+..+ ++..+..+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            44455555555554332 122233455566666666642 333333345666677777776543 444444566677777


Q ss_pred             CEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          375 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      +.+.+..+ ++..+..+|.+|++|+.+++.++..   ....+..+.+|+.+.+..+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~---~~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS---QWNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH---HHHTCBCCCCC--------
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee---ehhhhhccCCCCEEEeCCC
Confidence            77777543 4444556677777777777776532   1234555666776666544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.22  E-value=2.9e-11  Score=97.08  Aligned_cols=102  Identities=20%  Similarity=0.408  Sum_probs=82.3

Q ss_pred             CCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcC----CCCcEEecccC-ccchhhHhhccCCcc
Q 010711          396 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNS-RITSAGLRHLKPLKN  470 (503)
Q Consensus       396 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l----~~L~~L~l~~~-~~~~~~~~~l~~~~~  470 (503)
                      ..|++|+++++.+++.+...+..+++|+.|+|++|..+++.....+..+    ++|+.|+|++| .+++.+...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3578888888888888888888888899999999888888877777764    47999999988 588888888888999


Q ss_pred             cceEEeccC-CCCHHH--HHHHHhcCCCCcc
Q 010711          471 LRSLTLESC-KVTAND--IKRLQSRDLPNLV  498 (503)
Q Consensus       471 L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~  498 (503)
                      |++|++++| .++..+  ...+. ..+|+++
T Consensus       141 L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~  170 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEKEKIVQAFK-TSLPSLE  170 (176)
T ss_dssp             CCEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred             CCEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence            999999999 588765  44555 6777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.22  E-value=5.5e-13  Score=135.15  Aligned_cols=117  Identities=21%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             HhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCC
Q 010711          296 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT  375 (503)
Q Consensus       296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  375 (503)
                      +..+++|+.|++++|.+.... ..+..+++|+.|++++|.++. .+..+..+++|++|+|++|.++. .+..+..+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCC
Confidence            334444444444444443221 112234444444444444442 22334444455555555544442 233344444555


Q ss_pred             EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711          376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  416 (503)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  416 (503)
                      .|++++|.+... +..|..+++|+.|+|++|.+++..+..+
T Consensus       297 ~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            555555544432 2224444555555555555544444333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.20  E-value=1.1e-11  Score=116.90  Aligned_cols=130  Identities=18%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             HHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCC
Q 010711          342 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS  421 (503)
Q Consensus       342 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  421 (503)
                      .+|..++.|+.+.+.... ...+..+|.++++|+.+.+.. .++..+..+|..|.+|+.+.+..+ ++..+..+|..|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            345566777777765432 222335566677777777643 344444556667777777777643 45555566777777


Q ss_pred             CceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccC
Q 010711          422 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  479 (503)
Q Consensus       422 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  479 (503)
                      |+.+.|..+  ++.+...+|.+|++|+.+++.++...   ...+..+.+|+.+.+..+
T Consensus       336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred             CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence            777777543  55555667777777777777765321   234556667777766554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=8.9e-12  Score=102.11  Aligned_cols=105  Identities=18%  Similarity=0.226  Sum_probs=54.7

Q ss_pred             CCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccC
Q 010711          350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ  429 (503)
Q Consensus       350 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  429 (503)
                      .+.++++++.++..+ ..+  .++|+.|++++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345666666555432 111  24555555555555555444455555555555555555554444445555555555555


Q ss_pred             CCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          430 NCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       430 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      | .++...+..|..+++|+.|++++|++.
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5 455544444555555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=1.1e-11  Score=125.51  Aligned_cols=137  Identities=21%  Similarity=0.158  Sum_probs=91.7

Q ss_pred             HHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCC
Q 010711          341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS  420 (503)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  420 (503)
                      +..+..++.|+.|++++|.+.... ..+..+++|+.|++++|.++.. +..+..+++|+.|+|++|.++. .+..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSS-CCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCc-cChhhcCCC
Confidence            455667788888888888777533 3334678888888888877743 4566778888888888888774 366677778


Q ss_pred             CCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCc-ccceEEeccCCCC
Q 010711          421 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVT  482 (503)
Q Consensus       421 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~  482 (503)
                      +|+.|+|++| .++.+ |..|..+++|+.|+|++|+++...+..+.... .+..+++++|.++
T Consensus       294 ~L~~L~L~~N-~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          294 QLKYFYFFDN-MVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             TCSEEECCSS-CCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCEEECCCC-CCCcc-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence            8888888888 66653 44477788888888888888776665554322 2233566666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.15  E-value=1.5e-11  Score=101.15  Aligned_cols=104  Identities=20%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             CEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      +.++++++.++..+. .+  .++|+.|++++|.+....+..+..+++|+.|++++|.+++.....|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            456666655544321 11  245566666666555554445555555555555555555544444455555555555555


Q ss_pred             CCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          431 CNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       431 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                       .++...+..+..+++|+.|++++|++.
T Consensus        92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence             455444444555555555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.10  E-value=6.8e-10  Score=102.04  Aligned_cols=71  Identities=21%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             CCCCceeeccCCCCCChhhHHHHh---cCCCCcEEecccCccchhhHhhc----cCCcccceEEeccCCCCHHHHHHHH
Q 010711          419 LSSLTLLNLSQNCNLTDKTLELIS---GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRSLTLESCKVTANDIKRLQ  490 (503)
Q Consensus       419 ~~~L~~L~l~~~~~l~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~  490 (503)
                      +|+|+.|.+.+| .+.......+.   .+++|+.|+|+.|.+.+.+...+    ..+++|+.|++++|.++..+.+.+.
T Consensus       251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            345555555544 33322222221   24455555555555554333222    2335555555555555555544444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.08  E-value=1.7e-10  Score=92.60  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=76.1

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCC----CCCCEEEcCCCccccHHHHHHHhCCCC
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLIN  132 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~l~~  132 (503)
                      -.|+.|+++++.+++.....+..|++|++|+|++|..+++.+...++.+    ++|++|++++|..+++.+...+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3588999999888888888888899999999999888888888888874    579999999888788888888888888


Q ss_pred             CcEEeccCcccccC
Q 010711          133 LVKLDLERCTRIHG  146 (503)
Q Consensus       133 L~~L~l~~~~~~~~  146 (503)
                      |++|++++|+.++.
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888876665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=4e-11  Score=98.20  Aligned_cols=83  Identities=28%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      +++++|++++|.++...+..+..+++|+.|++++|+++..++..|..+++|++|++++|.+....+..+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            44555555555554444444444555555555555554444444444555555555555554443334444555555555


Q ss_pred             cCC
Q 010711          428 SQN  430 (503)
Q Consensus       428 ~~~  430 (503)
                      ++|
T Consensus       110 ~~N  112 (170)
T 3g39_A          110 LNN  112 (170)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=7.4e-11  Score=96.90  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeec
Q 010711          348 SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNL  427 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  427 (503)
                      ++|++|++++|.+++..+..+..+++|+.|++++|+++..++..|..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            45555555555555544444555555555555555555544444445555555555555555444334455555555555


Q ss_pred             cCC
Q 010711          428 SQN  430 (503)
Q Consensus       428 ~~~  430 (503)
                      ++|
T Consensus       113 ~~N  115 (174)
T 2r9u_A          113 YNN  115 (174)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.03  E-value=5.2e-09  Score=96.17  Aligned_cols=159  Identities=21%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             HhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHh--cCCCCCEEecCCC--ccC-hhhH---
Q 010711          246 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--QVG-SSGL---  317 (503)
Q Consensus       246 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~-~~~~---  317 (503)
                      ..+..+|+|+.|.++++.... .+. + ..++|+.|.+..|.++......+.  .+|+|++|++..+  ... ....   
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            344556677777776552111 011 1 256777777777777666555554  5777777776421  111 0000   


Q ss_pred             -HHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhc---CCCCCCEEEccCCccChHHHHHH-
Q 010711          318 -RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL-  392 (503)
Q Consensus       318 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~-  392 (503)
                       ..+..                      ..+|+|+.|.+.+|.+.+.....+.   .+|+|+.|+++.|.+.+.+...+ 
T Consensus       243 ~~~l~~----------------------~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          243 RPLFSK----------------------DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             GGGSCT----------------------TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             HHHHhc----------------------CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence             01110                      1234455555544444433222221   34555666665555555443322 


Q ss_pred             ---hcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          393 ---RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       393 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                         ..+++|+.|++++|.+++.+...+...- ...++++.+
T Consensus       301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~  340 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS  340 (362)
T ss_dssp             TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred             hhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence               3456666666666666665555554311 344566655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=1.8e-10  Score=108.04  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=48.8

Q ss_pred             HhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCc
Q 010711          344 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT  423 (503)
Q Consensus       344 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  423 (503)
                      +..+.+|+.+.+..+ +...+..+|..|++|+.+.+.++.++..+..+|.+|.+|+.+.+..+ ++..+..+|.+|.+|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            334444444444321 22222334445555555555555444444445555566666665432 4444445566666666


Q ss_pred             eeeccCCCCCChhhHHHHhcCC
Q 010711          424 LLNLSQNCNLTDKTLELISGLT  445 (503)
Q Consensus       424 ~L~l~~~~~l~~~~~~~~~~l~  445 (503)
                      .+.+..+  ++.+...+|.+++
T Consensus       337 ~i~ip~~--v~~I~~~aF~~c~  356 (379)
T 4h09_A          337 TISYPKS--ITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCTT--CCEECTTTTTTSS
T ss_pred             EEEECCc--cCEEchhHhhCCC
Confidence            6666443  4444444555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.96  E-value=6.1e-09  Score=86.31  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=65.2

Q ss_pred             HHHHhCCCCCCEeecCCC-CCCHhHHH----hhcCCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCCCCChh
Q 010711          341 LRKLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA  411 (503)
Q Consensus       341 ~~~~~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~  411 (503)
                      ...+...+.|++|++++| .+.+.+..    .+...++|++|++++|.+.+.+...    +...+.|++|++++|.|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556677777777777 77665443    2334566666666666666544322    23445566666666665554


Q ss_pred             HHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEec--ccCccchhhH----hhccCCcccceEEeccCCCCHHH
Q 010711          412 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND  485 (503)
Q Consensus       412 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l--~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~  485 (503)
                      +...+.                     ..+...++|+.|++  ++|.+.+.+.    +.+...++|++|++++|.+...+
T Consensus       109 g~~~l~---------------------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          109 GILALV---------------------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHH---------------------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHH---------------------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            433221                     22333445555555  4455554432    22334455666666666554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=1.2e-09  Score=102.59  Aligned_cols=312  Identities=16%  Similarity=0.146  Sum_probs=151.1

Q ss_pred             CCCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcE
Q 010711           56 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK  135 (503)
Q Consensus        56 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  135 (503)
                      ..+++.+.+.. .++.....+|.+|.+|+.+++..  .+...+..+|..| +|+.+.+..+  +......+|..+ +|+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~-~L~~  117 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGT-DLDD  117 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTC-CCSE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce--eeEeccceeccC-Cccc
Confidence            34566666653 24334445566667777776654  2445555566665 4555555433  222223344433 5666


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhh-hcCCCCCEEEcCCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL-KGLQKLTLLNLEGC  214 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~  214 (503)
                      +.+... ........+.++ .++.+.+..  .+.......+..+..++...+............. .......       
T Consensus       118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------  186 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTI-------  186 (379)
T ss_dssp             EECCTT-CCEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSE-------
T ss_pred             ccCCCc-cccccccccccc-eeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccce-------
Confidence            666541 111112223332 333333331  2222333444455555555544322111000000 0000000       


Q ss_pred             CCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHH
Q 010711          215 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV  294 (503)
Q Consensus       215 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  294 (503)
                            ...+.....+..+.+.... .......+.....++.+.+..+ +.......+..+..|+.+.+..+ +......
T Consensus       187 ------~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~  257 (379)
T 4h09_A          187 ------LESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF  257 (379)
T ss_dssp             ------EEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred             ------eccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence                  0011122233333332211 1112233344555666655432 22222233455666776666553 4444445


Q ss_pred             HHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCC
Q 010711          295 NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL  374 (503)
Q Consensus       295 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  374 (503)
                      ++..+.+|+.+.+..+ +.......+..|++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++..+..+|.+|.+|
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            5666677777776543 33333455677777887777766666555566777788888887543 555455677788888


Q ss_pred             CEEEccCCccChHHHHHHhcCCC
Q 010711          375 THLDLFGARITDSGAAYLRNFKN  397 (503)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~  397 (503)
                      +.+.+..+ ++.....+|.+++.
T Consensus       336 ~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          336 STISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CEEEECCc-cCEEchhHhhCCCC
Confidence            88877654 44444556666643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=3.4e-08  Score=81.80  Aligned_cols=115  Identities=21%  Similarity=0.158  Sum_probs=84.8

Q ss_pred             hHHHhhCCCCCCeeeccCC-CCChHHHHH----HhCCCCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccCh
Q 010711          316 GLRHLSGLTNLESINLSFT-GISDGSLRK----LAGLSSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITD  386 (503)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~  386 (503)
                      ....+...+.|++|++++| .+.+.....    +...++|++|++++|.+.+.+...    +...++|++|++++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3456778899999999999 998865544    446799999999999999876543    4456899999999999998


Q ss_pred             HHHHH----HhcCCCCCeEEe--cCCCCChhHHHhhh----cCCCCceeeccCC
Q 010711          387 SGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHIK----DLSSLTLLNLSQN  430 (503)
Q Consensus       387 ~~~~~----~~~~~~L~~L~l--~~~~~~~~~~~~~~----~~~~L~~L~l~~~  430 (503)
                      .+...    +...++|++|++  ++|.+.+.+...+.    ..++|+.|++++|
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            76443    455677888888  77777776544332    2345555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.87  E-value=1.4e-09  Score=100.76  Aligned_cols=89  Identities=21%  Similarity=0.247  Sum_probs=42.8

Q ss_pred             HhcCCCCCeEEecC-CCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcc
Q 010711          392 LRNFKNLRSLEICG-GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN  470 (503)
Q Consensus       392 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  470 (503)
                      +..+++|+.|+|++ |.+....+..|..+++|+.|+|++| +++...+..|.++++|+.|+|++|.+..+++..+..++ 
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence            33444444455543 4444444444444555555555555 45544444455555555555555555544333333333 


Q ss_pred             cceEEeccCCCC
Q 010711          471 LRSLTLESCKVT  482 (503)
Q Consensus       471 L~~L~l~~~~~~  482 (503)
                      |+.|++.+|++.
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.74  E-value=4.5e-09  Score=97.26  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=69.3

Q ss_pred             eeeccCC-CCChHHHHHHhCCCCCCEeecCC-CCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecC
Q 010711          328 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG  405 (503)
Q Consensus       328 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  405 (503)
                      .++.+++ .++. .|. +..+++|+.|+|++ |.+....+..|..+++|+.|++++|.+...++..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4555555 5655 333 66777778888875 777776666677777777777777777777666777777777777777


Q ss_pred             CCCChhHHHhhhcCCCCceeeccCC
Q 010711          406 GGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       406 ~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      |.++...+..+..++ |+.|++.+|
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred             CccceeCHHHcccCC-ceEEEeeCC
Confidence            777765555555444 777777777

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=8.7e-07  Score=76.97  Aligned_cols=65  Identities=28%  Similarity=0.397  Sum_probs=36.9

Q ss_pred             hcCCCCCeEEecCCCCChhH--HHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccch
Q 010711          393 RNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       393 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      ..+++|+.|+|++|.+++..  +..+..+++|+.|+|++| +++... ...+..+ +|++|++++|++..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            45677777777777766532  234455666666666666 555531 1222222 66666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=1.1e-06  Score=76.23  Aligned_cols=82  Identities=24%  Similarity=0.337  Sum_probs=42.6

Q ss_pred             cCCCCceeeccCCCCCChhh--HHHHhcCCCCcEEecccCccchhh-HhhccCCcccceEEeccCCCCH-----HHHHHH
Q 010711          418 DLSSLTLLNLSQNCNLTDKT--LELISGLTGLVSLNVSNSRITSAG-LRHLKPLKNLRSLTLESCKVTA-----NDIKRL  489 (503)
Q Consensus       418 ~~~~L~~L~l~~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~  489 (503)
                      .++.|+.|+|++| .++...  +..+..+++|+.|+|++|.+.... ...+..+ +|++|++++|+++.     ...+..
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4566666666666 555522  234455666666666666665541 1222223 66666666666553     223322


Q ss_pred             HhcCCCCccccc
Q 010711          490 QSRDLPNLVSFR  501 (503)
Q Consensus       490 ~~~~~~~L~~l~  501 (503)
                      ....+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            234566665553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.09  E-value=8.7e-05  Score=60.75  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             CCCCCCEeecCCC-CCCHhHH----HhhcCCCCCCEEEccCCccChHHH----HHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711          346 GLSSLKSLNLDAR-QITDTGL----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGGGLTDAGVKHI  416 (503)
Q Consensus       346 ~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~  416 (503)
                      .-+.|+.|+++++ .+.+.+.    .++..-..|+.|++++|.+.+...    ..+..-+.|++|+|++|.|.+.+...+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455555555553 5544332    233344556666666666665543    333455667777777777776665443


Q ss_pred             h----cCCCCceeeccCCC--CCChh----hHHHHhcCCCCcEEecccCc
Q 010711          417 K----DLSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR  456 (503)
Q Consensus       417 ~----~~~~L~~L~l~~~~--~l~~~----~~~~~~~l~~L~~L~l~~~~  456 (503)
                      .    .-+.|+.|+|++|.  .+...    ..+.+..-+.|+.|+++.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2    23556666666542  12322    12334445566666665443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.95  E-value=0.00019  Score=58.81  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=37.9

Q ss_pred             CCCCEeecCCCCCCHhHHHh----hcCCCCCCEEEccCCccChHHHHH----HhcCCCCCeEEecCC---CCChhHH---
Q 010711          348 SSLKSLNLDARQITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGG---GLTDAGV---  413 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~---~~~~~~~---  413 (503)
                      ..|+.|+|++|.+.+.+...    +..-..|+.|++++|.+.+.+...    +..-..|++|+++++   .+.+.+.   
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            44444444444444433322    223344555555555555444332    233445666666543   3343322   


Q ss_pred             -HhhhcCCCCceeeccCC
Q 010711          414 -KHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       414 -~~~~~~~~L~~L~l~~~  430 (503)
                       ..+..-++|+.|+++.+
T Consensus       150 a~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCCcCeEeccCC
Confidence             22333466666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.76  E-value=0.017  Score=43.88  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=35.9

Q ss_pred             eEEecCCCCC--hhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          400 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       400 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      .++-++++++  .. +..+  .++|+.|+|++| +++.+....|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554  32 2222  246788888888 777777777777888888888877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.70  E-value=0.017  Score=43.85  Aligned_cols=53  Identities=19%  Similarity=0.125  Sum_probs=39.2

Q ss_pred             EEEccCCccC--hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          376 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       376 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      .++.++..++  ..+ ..+  .++|+.|+|++|.|+......|..+++|+.|+|++|+
T Consensus        12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5666676665  332 111  3478999999999888777788888899999999884

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=80.40  E-value=0.64  Score=33.08  Aligned_cols=42  Identities=10%  Similarity=-0.012  Sum_probs=23.9

Q ss_pred             hhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCC
Q 010711           72 SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRR  115 (503)
Q Consensus        72 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  115 (503)
                      ....+|.+|.+|+.+.+-.  .++.++..+|..|.+|+.+.+.+
T Consensus        11 I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           11 MDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred             ecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence            3334556666666666654  34555555566666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	503
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 7e-14
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 36/386 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 22  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 76

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +     L  LV + +          +     +   +L       I        
Sbjct: 77  QL---TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 177 SGLTNLKSLQISCSKVTDSGIAYL-----------KGLQKLTLLNLEGCPV-TAACLDSL 224
                L S  IS         +             K L  LT L          + +  L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 225 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 284
           + L +L  L     Q+S         + +L  L+L  N++ D  +  L  LTNL  L+L 
Sbjct: 194 AKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 285 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 344
           +  I    L  L+GL  L  L+L   Q+  S +  L+GLT L ++ L+   + D S    
Sbjct: 250 NNQI--SNLAPLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISPIS- 304

Query: 345 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 404
             L +L  L L    I+   ++ ++SLT L  L     +++D  +  L N  N+  L   
Sbjct: 305 -NLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAG 359

Query: 405 GGGLTDAGVKHIKDLSSLTLLNLSQN 430
              ++   +  + +L+ +T L L+  
Sbjct: 360 HNQIS--DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 3e-09
 Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 35/362 (9%)

Query: 130 LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC 189
           L  +  L  +R      G+ ++ G+  L +L     +    +D+ PL  LT L  + ++ 
Sbjct: 43  LDQVTTLQADRL-----GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 190 SKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLD------------SLSALGSLFYLNLNR 237
           +++ D              L            +            ++S + +L  L   +
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 238 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG-LTNLESLNLDSCGIGDEGLVNL 296
                +       + +L  L            + +   LTNLESL   +  I    +  L
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPL 215

Query: 297 TGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 356
             L NL  L L+  Q+    +  L+ LTNL  ++L+   IS+  L  L+GL+ L  L L 
Sbjct: 216 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLG 271

Query: 357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI 416
           A QI  + ++ L  LT LT+L+L          + + N KNL  L +    ++   +  +
Sbjct: 272 ANQI--SNISPLAGLTALTNLELN--ENQLEDISPISNLKNLTYLTLYFNNIS--DISPV 325

Query: 417 KDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTL 476
             L+ L  L  + N  ++D  +  ++ LT +  L+  +++I+   L  L  L  +  L L
Sbjct: 326 SSLTKLQRLFFA-NNKVSD--VSSLANLTNINWLSAGHNQIS--DLTPLANLTRITQLGL 380

Query: 477 ES 478
             
Sbjct: 381 ND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 37  CLGQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISD 96
                   N        S   +L  + L  +++  S +  +   + LQ L F    ++S 
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPVSSLTKLQRLFFANN-KVS- 342

Query: 97  GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDL 138
             +  L  L+N+  LS   N       +   A L  + +L L
Sbjct: 343 -DVSSLANLTNINWLSAGHNQ---ISDLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 65/365 (17%), Positives = 126/365 (34%), Gaps = 66/365 (18%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
           + +   + L       +  + VTD        L ++T L  +   +    +D +  L +L
Sbjct: 13  NQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNL 68

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             +N +  QL+         +  L  + +  N+I D   +         +L  +     D
Sbjct: 69  TQINFSNNQLT--DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 291 EGLV------------NLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS- 337
                            ++ +  L  L         + +  L  L NL ++       + 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITD----------- 386
              +  LA L++L+SL     QI  + +  L  LT L  L L G ++ D           
Sbjct: 187 VSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 244

Query: 387 ---------SGAAYLRNFKNLRSLEICGGGLTD--------------------AGVKHIK 417
                    S  A L     L  L++    +++                      +  I 
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 418 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLE 477
           +L +LT L L  N N++D  +  +S LT L  L  +N++++   +  L  L N+  L+  
Sbjct: 305 NLKNLTYLTLYFN-NISD--ISPVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAG 359

Query: 478 SCKVT 482
             +++
Sbjct: 360 HNQIS 364

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 7e-10
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 253 SLKVLNLGFNEITDECLVHL-KGLTNLESLNLDSCGIGDEGLVNLT----GLCNLKCLEL 307
            ++ L++   E++D     L   L   + + LD CG+ +    +++        L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 308 SDTQVGSSGLRHL-----SGLTNLESINLS 332
              ++G  G+  +     +    ++ ++L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 325 NLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDL 379
           +++S+++    +SD    +L   L   + + LD   +T+       +AL     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 380 FGARITDSGAAYL-----RNFKNLRSLEICG 405
               + D G   +          ++ L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 6e-08
 Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 301 NLKCLELSDTQVGSSGLRHL-SGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNL 355
           +++ L++   ++  +    L   L   + + L   G+++   + ++       +L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 356 DARQITDTGLAALTSL-----TGLTHLDLFG 381
            + ++ D G+  +          +  L L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 9e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 32/116 (27%)

Query: 181 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQL 240
           +++SL I C +++D+  A L                       L  L     + L+ C L
Sbjct: 3   DIQSLDIQCEELSDARWAEL-----------------------LPLLQQCQVVRLDDCGL 39

Query: 241 SDDGCEKFSKI----GSLKVLNLGFNEITDECLVHL-----KGLTNLESLNLDSCG 287
           ++  C+  S       +L  LNL  NE+ D  +  +          ++ L+L +C 
Sbjct: 40  TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLVNLTG-----LCNLK 303
            L+VL L   +++D         L    +L  L+L +  +GD G++ L        C L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 304 CLELSDTQVGSSGLRHLSGL 323
            L L D          L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 229 SLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEITDECLVHL-----KGLTNLE 279
            L  L L  C +SD  C           SL+ L+L  N + D  ++ L     +    LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 280 SLNLDSCGIGDEGLVNLTGL 299
            L L      +E    L  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 271 HLKGLTNLESLNLDSCGIGDEGLVN----LTGLCNLKCLELSDTQVGSSGLRHLSG---- 322
             +  + L  L L  C + D    +    L    +L+ L+LS+  +G +G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 323 -LTNLESINLSFTGISDGSLRKLAGLSSLK 351
               LE + L     S+    +L  L   K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 397 NLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLN 451
           +++SL+I    L+DA    +   L    ++ L  +C LT+   + IS        L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELN 61

Query: 452 VSNSRITSAGLRHL-----KPLKNLRSLTLESC 479
           + ++ +   G+  +      P   ++ L+L++C
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 374 LTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 428
           +  LD+    ++D+  A L    +  + + +   GLT+A  K I    +   +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 429 QNCNLTDKTLELI-----SGLTGLVSLNVSN 454
            N  L D  +  +     +    +  L++ N
Sbjct: 64  SN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 348 SSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL-----RNFKNL 398
           S L+ L L    ++D+  +     L +   L  LDL    + D+G   L     +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 399 RSLEICGGGLTDAGVKHIKDL 419
             L +     ++     ++ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 82  NLQSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFAGLI----NLVKL 136
           ++QSLD   C ++SD     L   L     +       +T    K  +  +     L +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAEL 60

Query: 137 DLERCTRIHGGLVNLKGLMKLESLNIKWCN 166
           +L        G+  +   ++  S  I+  +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 157 LESLNIKWCNCITDSDMKPL-SGLTNLKSLQISCSKVTDSGIAY----LKGLQKLTLLNL 211
           ++SL+I+ C  ++D+    L   L   + +++    +T++        L+    L  LNL
Sbjct: 4   IQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 212 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 245
               +    +  +          + +  L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 319 HLSGLTNLESINLSFTGISDGSLRKLA----GLSSLKSLNLDARQITDTGLAALTS---- 370
                + L  + L+   +SD S   LA       SL+ L+L    + D G+  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 371 -LTGLTHLDLFGARITDSGAAYLRN-FKNLRSLEI 403
               L  L L+    ++     L+   K+  SL +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 198 AYLKGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQLSDDGCEKFSKI-- 251
              +    L +L L  C V+ +       +L A  SL  L+L+   L D G  +  +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 252 ---GSLKVLNLGFNEITDECLVHLKGL 275
                L+ L L     ++E    L+ L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 421 SLTLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLRH----LKPLKNLRSLT 475
            +  L++     L+D    EL+  L     + + +  +T A  +     L+    L  L 
Sbjct: 3   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 476 LESCKVTANDIKRL 489
           L S ++    +  +
Sbjct: 62  LRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 415 HIKDLSSLTLLNLSQNCNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----- 465
             +  S L +L L+ +C+++D +       +     L  L++SN+ +  AG+  L     
Sbjct: 364 LGQPGSVLRVLWLA-DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 466 KPLKNLRSLTLESCKVTANDIKRLQS--RDLPNL 497
           +P   L  L L     +     RLQ+  +D P+L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 150 NLKGLMKLESLNIKWCNCITDSDMKP----LSGLTNLKSLQISCSKVTDSGIAYL-KGLQ 204
             +    L  L +  C+ ++DS        L    +L+ L +S + + D+GI  L + ++
Sbjct: 364 LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 205 ----KLTLLNLEGCPVTAACLDSLSAL 227
                L  L L     +    D L AL
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 8e-09
 Identities = 39/265 (14%), Positives = 82/265 (30%), Gaps = 23/265 (8%)

Query: 58  SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNN 117
            +++     S +      H      +Q +D +  +         L   S L +LS     
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 118 AITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLS 177
            ++   +   A   NLV+L+L  C+                   +  C+ + + ++    
Sbjct: 83  -LSDPIVNTLAKNSNLVRLNLSGCSGFS---------EFALQTLLSSCSRLDELNLSWCF 132

Query: 178 GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 237
             T                   L G +K    +     V             +     + 
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-------NLVHLDLSDS 185

Query: 238 CQLSDDGCEKFSKIGSLKVLNL-GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 296
             L +D  ++F ++  L+ L+L    +I  E L+ L  +  L++L +    + D  L  L
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 244

Query: 297 TGLC---NLKCLELSDTQVGSSGLR 318
                   + C   +     + G +
Sbjct: 245 KEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 38/243 (15%), Positives = 81/243 (33%), Gaps = 14/243 (5%)

Query: 132 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK 191
            ++     R   +   L       +++ +++        +    LS  + L++L +   +
Sbjct: 24  GVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 192 VTDSGIAYLKGLQKLTLLNLEGC--------PVTAACLDSLSALGSLFYLNLNRCQLSDD 243
           ++D  +  L     L  LNL GC            +    L  L   +  +     +   
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 244 GCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNL 302
                  I  L +     N    +    ++   NL  L+L     + ++       L  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 303 KCLELSD-TQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 361
           + L LS    +    L  L  +  L+++ +    + DG+L+ L    +L  L ++    T
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 259

Query: 362 DTG 364
              
Sbjct: 260 TIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 102 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVN-LKGLMKLESL 160
              L +   ++FR   +   Q +        +  +DL         L   L    KL++L
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76

Query: 161 NIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAAC 220
           +++    ++D  +  L+  +NL  L +S                   L  L         
Sbjct: 77  SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 221 LDSLSALGSLFYLNLNRCQLSD---------DGCEKFSKIGSLKVLNLGFNEITDECLVH 271
              +    +     + +  LS                     + +       + ++C   
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195

Query: 272 LKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 330
              L  L+ L+L  C  I  E L+ L  +  LK L++       +       L +L+   
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 255

Query: 331 LSFTGISDGSL 341
             FT I+  ++
Sbjct: 256 SHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 135 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD 194
            LDL     +H  +     L+    +  +      D  +        ++ + +S S +  
Sbjct: 4   TLDLTGKN-LHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 195 SGI-AYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 253
           S +   L    KL  L+LEG  ++   +++L+   +L  LNL+ C    +   +      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
            +        + +  L      T        +        +NL+G           T   
Sbjct: 121 SR--------LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-- 170

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL-DARQITDTGLAALTSLT 372
                       +         + +   ++   L+ L+ L+L     I    L  L  + 
Sbjct: 171 -----VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 373 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 432
            L  L +FG  + D     L+  + L  L+I     T      I +  +  +  +   C 
Sbjct: 226 TLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGNKKNQEIWGIK--CR 280

Query: 433 LT 434
           LT
Sbjct: 281 LT 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 47/260 (18%), Positives = 88/260 (33%), Gaps = 15/260 (5%)

Query: 233 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 292
           L+L    L  D   +    G +       + + D+ L        ++ ++L +  I    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFM-DQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 293 LVNLTGLC-NLKCLELSDTQVGSSGLRHLSGLTNLESINLSF-----TGISDGSLRKLAG 346
           L  +   C  L+ L L   ++    +  L+  +NL  +NLS             L   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 347 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG----ARITDSGAAYLRNFKNLRSLE 402
           L  L              +A       +T L+L G     + +D      R    +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 462
                L +   +    L+ L  L+LS+  ++  +TL  +  +  L +L V    +    L
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 241

Query: 463 RHLKPLKNLRSLTLESCKVT 482
           + LK  + L  L +     T
Sbjct: 242 QLLK--EALPHLQINCSHFT 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 53/282 (18%), Positives = 93/282 (32%), Gaps = 15/282 (5%)

Query: 106 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWC 165
            +   L  + N  IT      F  L NL  L L               L+KLE L +   
Sbjct: 31  PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SK 88

Query: 166 NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS 225
           N + +   K    L  L+  +   +KV  S    L  +  + L        +     +  
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQ 147

Query: 226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
            +  L Y+ +    ++           SL  L+L  N+IT      LKGL NL  L L  
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 286 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD------G 339
             I      +L    +L+ L L++ ++       L+    ++ + L    IS        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 340 SLRKLAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDL 379
                   +S   ++L +  +    +  +    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 11/258 (4%)

Query: 180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ 239
            +   L +  +K+T+      K L+ L  L L    ++     + + L  L  L L++ Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 240 LSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL 299
           L +   +    +  L+V      ++       L  +  +E L  +             G+
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQ 359
             L  + ++DT + +          +L  ++L    I+      L GL++L  L L    
Sbjct: 150 KKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 360 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD------AGV 413
           I+     +L +   L  L L   ++         + K ++ + +    ++          
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 414 KHIKDLSSLTLLNLSQNC 431
            +    +S + ++L  N 
Sbjct: 266 GYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 52/276 (18%), Positives = 90/276 (32%), Gaps = 34/276 (12%)

Query: 253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV 312
              +L+L  N+IT+      K L NL +L L +  I          L  L+ L LS  Q+
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKL-----------------------AGLSS 349
                +    L  L       T +       L                        G+  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 350 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 409
           L  + +    IT        S   LT L L G +IT   AA L+   NL  L +    ++
Sbjct: 152 LSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 410 DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS------AGLR 463
                 + +   L  L+L+ N  L       ++    +  + + N+ I++          
Sbjct: 209 AVDNGSLANTPHLRELHLN-NNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 464 HLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 499
           +     +   ++L S  V   +I+    R +    +
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 46/258 (17%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 157 LESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 216
              L+++  N IT+        L NL +L +  +K++         L KL  L L    +
Sbjct: 33  TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 217 TA---------------------ACLDSLSALGSLFYLNLNRCQLSDDGCEK--FSKIGS 253
                                        + L  +  + L    L   G E   F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 254 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVG 313
           L  + +    IT    +      +L  L+LD   I      +L GL NL  L LS   + 
Sbjct: 152 LSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 314 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD------TGLAA 367
           +     L+   +L  ++L+   +       LA    ++ + L    I+            
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 368 LTSLTGLTHLDLFGARIT 385
            T     + + LF   + 
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 16/283 (5%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
                +DL  + +T+      K+  NL +L      +IS         L  L  L   +N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 89

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
             +     K    L  L   + E           L  ++ +E          +  +    
Sbjct: 90  Q-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAF 146

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
            G+  L  ++I+ + +T         L +   L+L+G  +T     SL  L +L  L L+
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD------ 290
              +S       +    L+ L+L  N++       L     ++ + L +  I        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRH--LSGLTNLESINL 331
                 T   +   + L    V    ++      +    ++ L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 5/162 (3%)

Query: 324 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 383
            +   ++L    I++        L +L +L L   +I+     A   L  L  L L   +
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 384 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 443
           + +      +  + LR  E     +  +    +  +  + L         +        G
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT--NPLKSSGIENGAFQG 148

Query: 444 LTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 485
           +  L  + ++++ IT+          +L  L L+  K+T  D
Sbjct: 149 MKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 21/227 (9%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           ++ + +    S+VTD   +   D   + +L       ++   +E ++ L+NL  L  + N
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDN 73

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K      NL K+     +      V+    ++           ITD  + PL
Sbjct: 74  QITDLAPLK------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPL 125

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
           +GL+NL+ L +  +++T+          +     L       + L  L+ L  L  L  +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQ----YLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 283
             ++SD      + + +L  ++L  N+I+D  +  L   +NL  + L
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
           P   L N   +    S VTD        L  +T L+  G  VT   ++ +  L +L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
           L   Q++D    K     +   L+    +            T   +    +      GL 
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 295 NLTGL--------------CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 340
           NL  L                     LS      S L  L+ L+ L ++      ISD  
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 341 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 379
           +  LA L +L  ++L   QI+D  ++ L + + L  + L
Sbjct: 188 ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 19/228 (8%)

Query: 128 AGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQI 187
             L N +K+   +        V    L  + +L+         + ++ +  L NL  L++
Sbjct: 16  PALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70

Query: 188 SCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEK 247
             +++TD              L+       +A     S                  G   
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 248 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 307
              +          + +     +            L         L  L  L  L  L+ 
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQ----------YLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 308 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 355
            D ++  S +  L+ L NL  ++L    ISD  +  LA  S+L  + L
Sbjct: 181 DDNKI--SDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 23/212 (10%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
           +  G + +TD   V    L  + +L+    G+    +  +  L NL  LEL D Q+    
Sbjct: 24  IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
                       ++ +            +  +   +           GL+ L  L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 377 LDLFGARITD--------------SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 422
                + +                S    L N   L +L+     ++D  +  +  L +L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNL 197

Query: 423 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 454
             ++L  N  ++D  +  ++  + L  + ++N
Sbjct: 198 IEVHLK-NNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 171 SDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSL 230
             +             +    VTD        L  +  +      +    +  +  L ++
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK--SVQGIQYLPNV 70

Query: 231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 290
             L LN  +L+D        + +LK L   F +      +                    
Sbjct: 71  TKLFLNGNKLTDIKP-----LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 291 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 350
           +    +           ++     + L  L+ L  L   +   + I       LAGL+ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKL 180

Query: 351 KSLNLDARQITDTGLAALTSLTGLTHLDLFG 381
           ++L L    I+D  L AL  L  L  L+LF 
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 17/204 (8%)

Query: 129 GLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 188
                +K +L++ +      V    L  ++ +     +      ++ +  L N+  L ++
Sbjct: 22  AFAETIKDNLKKKS--VTDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 189 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKF 248
            +K+T   I  L  L+ L  L L+   V                L  N     +      
Sbjct: 77  GNKLT--DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 308
                    N   +      L  L          L         +V L GL  L+ L LS
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLD--------TLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 309 DTQVGSSGLRHLSGLTNLESINLS 332
              +  S LR L+GL NL+ + L 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 257 LNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG 316
            NL    +TD   V    L +++ +  ++  I  + +  +  L N+  L L+  ++  + 
Sbjct: 29  DNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKL--TD 82

Query: 317 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTH 376
           ++ L+ L NL  + L    + D S  K       K  +L       + +  L  L  L  
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 377 LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 436
           L L   +ITD         +  +   +       + +  +  L+ L  L LS+N +++D 
Sbjct: 139 LYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISD- 192

Query: 437 TLELISGLTGLVSLNVSN 454
            L  ++GL  L  L + +
Sbjct: 193 -LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 43/229 (18%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +  +L    VTD   +   + +++  +  N     S  G+++L    N+T L    N
Sbjct: 24  AETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYL---PNVTKLFLNGN 78

Query: 117 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPL 176
                  +K  A L NL  L L+         +     +K  SL     + I        
Sbjct: 79  KL---TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH--- 132

Query: 177 SGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLN 236
                          +               L  L+   +    +  +  L  L      
Sbjct: 133 ---------LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL------ 177

Query: 237 RCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 285
                            L+ L L  N I+D  L  L GL NL+ L L S
Sbjct: 178 ---------------TKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 175 PLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 234
             + L       +  + VTD        L ++T L  +   + +  +D +  L +L  +N
Sbjct: 13  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 68

Query: 235 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 294
            +  QL+D    K        ++N                       N  +     + L 
Sbjct: 69  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 295 NLTGLCNLKCLELSDTQVGS--------------SGLRHLSGLTNLESINLSFTGISDGS 340
           NL  L          + +                + L+ L+ LT LE +++S   +SD  
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-- 186

Query: 341 LRKLAGLSSLKSL 353
           +  LA L++L+SL
Sbjct: 187 ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 42/187 (22%)

Query: 57  SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 116
           +  +   L  ++VTD   +   D   + +L  +    I    ++ +  L+NLT ++F  N
Sbjct: 18  AEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNN 72

Query: 117 NA------------------------------------ITAQGMKAFAGLINLVKLDLER 140
                                                 +T    +           +L R
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 141 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD-SGIAY 199
                  + ++  L  L SL     +    +D+KPL+ LT L+ L IS +KV+D S +A 
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 192

Query: 200 LKGLQKL 206
           L  L+ L
Sbjct: 193 LTNLESL 199

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 231 FYLNLNRCQLSDDGCEKFSKI------GSLKVLNLGFNEITDECLVHL-----KGLTNLE 279
             L LN C LS  G               L+ L L +NEI  + +  L     + + +L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 280 SLNLDSCGIGDEG 292
            L L+     +E 
Sbjct: 306 FLELNGNRFSEED 318

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 253 SLKVLNLGFNEITDECLVH----LKGLTNLESLNLDSCGIGDEGLV----NLTGLCNLKC 304
           S++  +L  + IT E        L    +++ + L    IG E       N+    +L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 305 LELSDTQ 311
            E SD  
Sbjct: 64  AEFSDIF 70

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 255 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQV 312
           +VL+L   ++T   L HL+ L  +  L+L    +      L  L  L  L+  + +   V
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 313 GSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD 362
                        L +  L        +++ L     L  LNL    +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.8e-23  Score=193.53  Aligned_cols=144  Identities=30%  Similarity=0.438  Sum_probs=82.8

Q ss_pred             CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      +++|+.+++.+|.++...  .+..+++|++++++++.+...  ..+..++.++.+.+..|.+...  ..+..+++++.|+
T Consensus       240 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~  313 (384)
T d2omza2         240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLT  313 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEE
T ss_pred             ccccchhccccCccCCCC--cccccccCCEeeccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEE
Confidence            344444444444333221  134455555555555555442  2244555666666666655542  2345566677777


Q ss_pred             ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccC
Q 010711          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  479 (503)
Q Consensus       403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  479 (503)
                      +++|.+++..  .+..+++|++|++++| .++...  .+.++++|++|++++|++++..+  +.++++|+.|+|++|
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n-~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANN-KVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCC-CCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            7766666542  3556677777777777 566533  46667777777777777766543  566777777777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.9e-22  Score=188.72  Aligned_cols=190  Identities=31%  Similarity=0.452  Sum_probs=118.4

Q ss_pred             hcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCe
Q 010711          249 SKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLES  328 (503)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  328 (503)
                      ..+++++.+.++++.+....+  ....++|+.|++++|.+.+.  ..+..+++|+.+++.++.+....  .+..+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCE
Confidence            344445555555444433221  23344555555555544432  13445555666666655554332  2455666666


Q ss_pred             eeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCC
Q 010711          329 INLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL  408 (503)
Q Consensus       329 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  408 (503)
                      ++++++.+....  .+..++.++.+.+..+.++..  ..+..+++++.|++++|++.+..  .+..+++|++|++++|.+
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             eeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            666666555322  255667777777777776652  34566778888888888777653  367788888888888887


Q ss_pred             ChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711          409 TDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (503)
Q Consensus       409 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~  455 (503)
                      ++..  .+..+++|+.|++++| ++++..+  +.++++|+.|+|++|
T Consensus       342 ~~l~--~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SDVS--SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCG--GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCh--hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCC
Confidence            7642  5777888888888888 7777553  778888888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.6e-20  Score=175.63  Aligned_cols=395  Identities=25%  Similarity=0.283  Sum_probs=232.7

Q ss_pred             CCCEEecCCCeecChhhH-HHhhCCCCCCEEEcCCCccccHHH----HHHHhCCCCCcEEeccCcccccCccccccCCcc
Q 010711           82 NLQSLDFNFCIQISDGGL-EHLRGLSNLTSLSFRRNNAITAQG----MKAFAGLINLVKLDLERCTRIHGGLVNLKGLMK  156 (503)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  156 (503)
                      +|+.|+++++ .++.... +.+..++++++|++++|. +++..    ...+..+++|++|++++|.........+..   
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~---   77 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ---   77 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH---
T ss_pred             CCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH---
Confidence            5788888764 6666543 335577888888888886 44433    345567777777777775432211111110   


Q ss_pred             ccEeeccCCcCCCcccccccc-CCCCCCEEEeecccCCchh----HHhhhcCCCCCEEEcCCCCCcHHHHHHhh-----C
Q 010711          157 LESLNIKWCNCITDSDMKPLS-GLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----A  226 (503)
Q Consensus       157 L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~  226 (503)
                                        .+. ...+|++|+++++.+++..    ...+..+++|++|++++|.+.......+.     .
T Consensus        78 ------------------~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~  139 (460)
T d1z7xw1          78 ------------------GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP  139 (460)
T ss_dssp             ------------------TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             ------------------HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccc
Confidence                              000 1123444444444443322    12234445555555555554432222111     1


Q ss_pred             CCCCCEEEccCCCCChhh----hHhhhcCCCCCEEEccCCCCChHHHH----Hh-hCCCCCCEEEccCCCCChh----HH
Q 010711          227 LGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLV----HL-KGLTNLESLNLDSCGIGDE----GL  293 (503)
Q Consensus       227 l~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~~~~~----~~  293 (503)
                      ..................    ...+.....++.+.++++........    .+ ........+.+.++.....    ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (460)
T d1z7xw1         140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC  219 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence            122333333333322211    12233455666676666554432221    11 2233455666666654432    22


Q ss_pred             HHHhcCCCCCEEecCCCccChhh-----HHHhhCCCCCCeeeccCCCCChHHH----HHHhCCCCCCEeecCCCCCCHhH
Q 010711          294 VNLTGLCNLKCLELSDTQVGSSG-----LRHLSGLTNLESINLSFTGISDGSL----RKLAGLSSLKSLNLDARQITDTG  364 (503)
Q Consensus       294 ~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~  364 (503)
                      ..+...+.++.+.+.++......     .........++.+++++|.+.....    ..+...+.++.+++++|.+.+.+
T Consensus       220 ~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         220 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             ccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445677788888777654332     2223456778888888887775433    23446788889999888887655


Q ss_pred             HHhh-----cCCCCCCEEEccCCccChHHHH----HHhcCCCCCeEEecCCCCChhHHHhhh-----cCCCCceeeccCC
Q 010711          365 LAAL-----TSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK-----DLSSLTLLNLSQN  430 (503)
Q Consensus       365 ~~~~-----~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~  430 (503)
                      ...+     ...+.|+.+.+++|.+......    .+...++|++|++++|.+++.+...+.     ..+.|++|++++|
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC
Confidence            4433     2346789999999887765433    345677899999999998876554442     3567999999999


Q ss_pred             CCCChhhH----HHHhcCCCCcEEecccCccchhhHhhc----c-CCcccceEEeccCCCCHHHHHHHH--hcCCCCccc
Q 010711          431 CNLTDKTL----ELISGLTGLVSLNVSNSRITSAGLRHL----K-PLKNLRSLTLESCKVTANDIKRLQ--SRDLPNLVS  499 (503)
Q Consensus       431 ~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~  499 (503)
                       .++....    +.+..+++|++|+|++|++++.+...+    . +...|+.|+++++.+.+...+.+.  ....|+|+.
T Consensus       380 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         380 -DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             -CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence             7887543    446678999999999999988666443    2 345799999999999876654442  145677765


Q ss_pred             c
Q 010711          500 F  500 (503)
Q Consensus       500 l  500 (503)
                      +
T Consensus       459 ~  459 (460)
T d1z7xw1         459 I  459 (460)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-19  Score=171.38  Aligned_cols=393  Identities=23%  Similarity=0.283  Sum_probs=191.9

Q ss_pred             CeeEEEccCCCCChhhhhh-ccCCCCCCEEecCCCeecChhhH----HHhhCCCCCCEEEcCCCccccHHHHHHHh----
Q 010711           58 SLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDGGL----EHLRGLSNLTSLSFRRNNAITAQGMKAFA----  128 (503)
Q Consensus        58 ~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----  128 (503)
                      +|+.|+++++++++..+.. ++.++++++|+|++| .++....    .++..+++|++|++++|. +++.....+.    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            5888999999998876555 578899999999988 5665443    445688999999999886 5554444443    


Q ss_pred             -CCCCCcEEeccCcccccCc----cccccCCccccEeeccCCcCCCcccccccc-----CCCCCCEEEeecccCCch---
Q 010711          129 -GLINLVKLDLERCTRIHGG----LVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDS---  195 (503)
Q Consensus       129 -~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~---  195 (503)
                       ...+|++|++++|......    +..+..+++|++|++++|. +.......+.     ..................   
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhhc
Confidence             2246788888776532222    2345566777777776643 2221111111     111222333322222211   


Q ss_pred             -hHHhhhcCCCCCEEEcCCCCCcHHHHH----Hhh-CCCCCCEEEccCCCCChhhh----HhhhcCCCCCEEEccCCCCC
Q 010711          196 -GIAYLKGLQKLTLLNLEGCPVTAACLD----SLS-ALGSLFYLNLNRCQLSDDGC----EKFSKIGSLKVLNLGFNEIT  265 (503)
Q Consensus       196 -~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~-~l~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~  265 (503)
                       ....+.....++.+.++++........    .+. .......+.+..+.......    ..+...+.++.+.++++...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence             112234445666666666654432111    111 12344455555554433211    22234455556665555443


Q ss_pred             hHHH-----HHhhCCCCCCEEEccCCCCChhHH----HHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCC
Q 010711          266 DECL-----VHLKGLTNLESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  336 (503)
Q Consensus       266 ~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  336 (503)
                      ....     ........++.+++++|.+.....    ..+...+.++.++++++.+.+.....+.               
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~---------------  304 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC---------------  304 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH---------------
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh---------------
Confidence            2211     112234455555555555443221    1223344555555555544433222211               


Q ss_pred             ChHHHHHHh-CCCCCCEeecCCCCCCHhHHHhh----cCCCCCCEEEccCCccChHHHHHH-----hcCCCCCeEEecCC
Q 010711          337 SDGSLRKLA-GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSGAAYL-----RNFKNLRSLEICGG  406 (503)
Q Consensus       337 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~  406 (503)
                           ..+. ....|+.+.++++.++......+    ...++|++|++++|.+.+.+...+     ...+.|++|++++|
T Consensus       305 -----~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         305 -----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             -----HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             -----ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC
Confidence                 0001 12345555555544443332221    233455555555555544332222     12344555566555


Q ss_pred             CCChhHHHh----hhcCCCCceeeccCCCCCChhhHHHHh-----cCCCCcEEecccCccchhhHhhc----cCCcccce
Q 010711          407 GLTDAGVKH----IKDLSSLTLLNLSQNCNLTDKTLELIS-----GLTGLVSLNVSNSRITSAGLRHL----KPLKNLRS  473 (503)
Q Consensus       407 ~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~  473 (503)
                      .+++.+...    +..+++|++|+|++| .++......+.     +...|+.|+++++.+.+.....+    ...|+|+.
T Consensus       380 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         380 DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             CCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            555433222    333455666666665 55543333221     22356677777666665444332    23455554


Q ss_pred             E
Q 010711          474 L  474 (503)
Q Consensus       474 L  474 (503)
                      |
T Consensus       459 ~  459 (460)
T d1z7xw1         459 I  459 (460)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.5e-21  Score=173.51  Aligned_cols=249  Identities=21%  Similarity=0.216  Sum_probs=151.0

Q ss_pred             CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEc
Q 010711          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL  283 (503)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  283 (503)
                      +++++|++++|.+......+|.++++|++|+++++.+....+..|..++.|+.+++++|.+.....   ...+.+..|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            578888888888776544567788888888888888877667777888888888888877664221   23456777777


Q ss_pred             cCCCCChhHHHHHhcCCCCCEEecCCCccChh--hHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCC
Q 010711          284 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS--GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT  361 (503)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  361 (503)
                      .++.+.......+........+....+.....  ....+..                        +++|+.+.+.++.+.
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~------------------------l~~L~~l~l~~n~l~  163 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG------------------------MKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG------------------------CTTCCEEECCSSCCC
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCcccccc------------------------ccccCccccccCCcc
Confidence            77766665555565566666666555432221  1122333                        444444444444443


Q ss_pred             HhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHH
Q 010711          362 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI  441 (503)
Q Consensus       362 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  441 (503)
                      ....   ..+++|+.|++++|......+..+..++.++.|++++|.+.+..+..+..+++|++|++++| .++.. +..+
T Consensus       164 ~l~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l-p~~l  238 (305)
T d1xkua_         164 TIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGL  238 (305)
T ss_dssp             SCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC-CTTT
T ss_pred             ccCc---ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc-cccc
Confidence            3211   12345566666555555544455555666666666666666555555666666666666666 55543 3355


Q ss_pred             hcCCCCcEEecccCccchhhHhhc------cCCcccceEEeccCCCCHH
Q 010711          442 SGLTGLVSLNVSNSRITSAGLRHL------KPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       442 ~~l~~L~~L~l~~~~~~~~~~~~l------~~~~~L~~L~l~~~~~~~~  484 (503)
                      ..+++|+.|++++|+++.+....+      ...++|+.|++++|++...
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            666666666666666665543322      3456677777777766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=9.8e-21  Score=170.54  Aligned_cols=261  Identities=19%  Similarity=0.195  Sum_probs=174.3

Q ss_pred             CCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEc
Q 010711          180 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL  259 (503)
Q Consensus       180 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  259 (503)
                      +.+++|+++++.++......|..+++|+.|+++++.+....+..+..+++|+++++.+|.+.....   ...+.+..+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---~~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---SCCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---chhhhhhhhhc
Confidence            689999999999987777789999999999999999887666778899999999999998875432   23467899999


Q ss_pred             cCCCCChHHHHHhhCCCCCCEEEccCCCCCh--hHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCC
Q 010711          260 GFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS  337 (503)
Q Consensus       260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  337 (503)
                      ..+.+.......+.....+..+....+....  .....+..+++|+.+.+.++.+.....   ..+++|+.|+       
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---~~~~~L~~L~-------  177 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELH-------  177 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEE-------
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc---ccCCccCEEE-------
Confidence            9988876666667777888888887764332  234466778899999998876543211   1234444444       


Q ss_pred             hHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhh
Q 010711          338 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK  417 (503)
Q Consensus       338 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  417 (503)
                                       +.++......+..+..++.++.|++++|.+....+.++.++++|++|++++|.++.. +..+.
T Consensus       178 -----------------l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~  239 (305)
T d1xkua_         178 -----------------LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA  239 (305)
T ss_dssp             -----------------CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred             -----------------CCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccc
Confidence                             444444443344445555555555555555555455555666666666666666543 34555


Q ss_pred             cCCCCceeeccCCCCCChhhHHHH------hcCCCCcEEecccCccch--hhHhhccCCcccc
Q 010711          418 DLSSLTLLNLSQNCNLTDKTLELI------SGLTGLVSLNVSNSRITS--AGLRHLKPLKNLR  472 (503)
Q Consensus       418 ~~~~L~~L~l~~~~~l~~~~~~~~------~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~  472 (503)
                      .+++|++|++++| +++.+....|      ...++|+.|+|++|++..  +.+..|.-+....
T Consensus       240 ~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~  301 (305)
T d1xkua_         240 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  301 (305)
T ss_dssp             TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             cccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence            6666666666666 5555433333      245678888888887653  3344444333333

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=7.5e-23  Score=185.22  Aligned_cols=248  Identities=18%  Similarity=0.191  Sum_probs=138.8

Q ss_pred             CCCEEEcCCCCCcH--HHHHHhhCCCCCCEEEccC-CCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEE
Q 010711          205 KLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL  281 (503)
Q Consensus       205 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  281 (503)
                      +++.|+++++.+..  ..+..+.++++|++|++++ +.+.+..|..++++++|++|++++|.+.+..+..+..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            45666666665543  1234555666666666654 44444445555556666666666555544433344445555555


Q ss_pred             EccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCC-CEeecCCCCC
Q 010711          282 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL-KSLNLDARQI  360 (503)
Q Consensus       282 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~  360 (503)
                      +++++.+....+..+..+                        +.++.+++++|.+....+..+..+..+ +.+.+++|.+
T Consensus       131 ~l~~N~~~~~~p~~l~~l------------------------~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSL------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCCGGGGGC------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccCchhhccC------------------------cccceeeccccccccccccccccccccccccccccccc
Confidence            555543333333344444                        444444444444433333334444333 5555555555


Q ss_pred             CHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHH
Q 010711          361 TDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL  440 (503)
Q Consensus       361 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  440 (503)
                      ++..+..+..+. ...+++..+......+..+..+++++.++++++.+.+.. ..+..+++|+.|++++| ++++..|..
T Consensus       187 ~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N-~l~g~iP~~  263 (313)
T d1ogqa_         187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNN-RIYGTLPQG  263 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSS-CCEECCCGG
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccC-eecccCChH
Confidence            544444444333 235666666555544555556677777777777665543 34556677777777777 666666667


Q ss_pred             HhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCC
Q 010711          441 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK  480 (503)
Q Consensus       441 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  480 (503)
                      +.++++|+.|+|++|+++...| .+..+++|+.+++++|+
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             HhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            7777777777777777764434 34566777777777775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=3.4e-22  Score=180.84  Aligned_cols=247  Identities=17%  Similarity=0.203  Sum_probs=138.9

Q ss_pred             CCCEEEeecccCCc--hhHHhhhcCCCCCEEEcCC-CCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEE
Q 010711          181 NLKSLQISCSKVTD--SGIAYLKGLQKLTLLNLEG-CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVL  257 (503)
Q Consensus       181 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  257 (503)
                      +++.|+++++.+.+  ..+..+.++++|++|++++ +.+.+..|..+.++++|++|++++|.+....+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            56666666665554  2345666777777777765 45544445566777777777777777666555666667777777


Q ss_pred             EccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCC-CEEecCCCccChhhHHHhhCCCCCCeeeccCCCC
Q 010711          258 NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNL-KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGI  336 (503)
Q Consensus       258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  336 (503)
                      +++.|......+..+..++.++.++++++.+....+..+..+.++ +.+.+..+.+....+..+..+. ...+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            777766555555566777777777777776655445555555554 6666666665544333343332 22455544433


Q ss_pred             ChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhh
Q 010711          337 SDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI  416 (503)
Q Consensus       337 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  416 (503)
                      ....+..+..+++++.+++.++.+.... ..+..+++|+.|++++|+++...|..+.++++|++|++++|.+++..| .+
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CS
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-Cc
Confidence            3333333444555666665555554432 234445555555555555554444445555555555555555544322 22


Q ss_pred             hcCCCCceeeccCC
Q 010711          417 KDLSSLTLLNLSQN  430 (503)
Q Consensus       417 ~~~~~L~~L~l~~~  430 (503)
                      ..+++|+.+++++|
T Consensus       288 ~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         288 GNLQRFDVSAYANN  301 (313)
T ss_dssp             TTGGGSCGGGTCSS
T ss_pred             ccCCCCCHHHhCCC
Confidence            33444444555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-21  Score=171.70  Aligned_cols=206  Identities=25%  Similarity=0.296  Sum_probs=123.4

Q ss_pred             CCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecC-CCccChhhHHHhhCCCCCCeee
Q 010711          252 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS-DTQVGSSGLRHLSGLTNLESIN  330 (503)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~  330 (503)
                      +.+++|++++|.++...+..+..+++|++|+++++.+.......+..+..++.+... .+.+.......++.+++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456777777777765555556677777777777776665555555556666666543 2333333344455666666666


Q ss_pred             ccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCCh
Q 010711          331 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD  410 (503)
Q Consensus       331 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  410 (503)
                      +.++.+.......+...++|+.+++.+|.++..++..+..+++|+.|++++|.+...++.++..+++|+.+.+++|.+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            66665544333444455666666666666665544555556666666666666655555555566666666666666665


Q ss_pred             hHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          411 AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       411 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ..+..|..+++|+.|++++| .+....+..+..+++|+.|++++|++.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCCCC
Confidence            55555666666666666666 555555556666666666666665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.8e-19  Score=155.29  Aligned_cols=223  Identities=22%  Similarity=0.227  Sum_probs=126.7

Q ss_pred             CEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHH-HHHhcCCCCCEEecCC
Q 010711          231 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSD  309 (503)
Q Consensus       231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~  309 (503)
                      +.+++++..+.......+.. ..+..+.++........ .......+|++|++++|.+..... ..+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677766655433332221 12344444433222111 111234567777777776654433 3445667777777777


Q ss_pred             CccChhhHHHhhCCCCCCeeeccCC-CCChHHHHHH-hCCCCCCEeecCCC-CCCHhHHH-hhc-CCCCCCEEEccCC--
Q 010711          310 TQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKL-AGLSSLKSLNLDAR-QITDTGLA-ALT-SLTGLTHLDLFGA--  382 (503)
Q Consensus       310 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~~--  382 (503)
                      +.+.+.....+..+++|++|++++| .+++.....+ ..+++|++|+++++ .+++.... .+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            7766666666666777777777765 5665444333 35677777777664 44443332 222 3466777777665  


Q ss_pred             ccChHHHHH-HhcCCCCCeEEecCC-CCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711          383 RITDSGAAY-LRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (503)
Q Consensus       383 ~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~  455 (503)
                      .+++..... ..++|+|++|++++| .+++.....+..+++|++|++++|..+++.....+.++++|+.|++++|
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            244433332 245677777777664 3565556666666777777777766666655555666677777777666

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-20  Score=168.27  Aligned_cols=203  Identities=23%  Similarity=0.305  Sum_probs=108.0

Q ss_pred             CCCCEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccC-CCCChHHHHHhhCCCCCCEEE
Q 010711          204 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN  282 (503)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~  282 (503)
                      +.+++|++++|.+....+..+.++++|++++++++.+.......+..+..++.+.+.. +.+....+..+..+++|+.|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3566777777766655444566666677777766666655555555555666555432 233322233344555555555


Q ss_pred             ccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCH
Q 010711          283 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD  362 (503)
Q Consensus       283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  362 (503)
                      ++++.+.......+....+|+.+++.++                        .++......++.+++|+.|++.+|.+..
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N------------------------~l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDN------------------------ALQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccc------------------------cccccChhHhccccchhhcccccCcccc
Confidence            5555443333333334444445555444                        4443333334445555555555555554


Q ss_pred             hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          363 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       363 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      ..+..+..+++|+.+.+++|++....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            44444555555555555555555544555555555555555555555555555555555555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-17  Score=145.91  Aligned_cols=252  Identities=19%  Similarity=0.252  Sum_probs=161.7

Q ss_pred             CEEEcCCCCCcHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHH-HHhhCCCCCCEEEccC
Q 010711          207 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDS  285 (503)
Q Consensus       207 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~  285 (503)
                      +.+++++..+.......+.. .....+.+......... .......+|++|+++++.+..... ..+..+++|++|.+.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            36788877665443333322 23445555443322111 112234578888888877765443 4467788888888888


Q ss_pred             CCCChhHHHHHhcCCCCCEEecCCC-ccChhhHHH-hhCCCCCCeeeccCC-CCChHHHH-HHh-CCCCCCEeecCCC--
Q 010711          286 CGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRH-LSGLTNLESINLSFT-GISDGSLR-KLA-GLSSLKSLNLDAR--  358 (503)
Q Consensus       286 ~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~-~~~-~~~~L~~L~l~~~--  358 (503)
                      |.+.+.....+..+++|++|+++++ .+.+..... ...+++|++|++++| .+++.... .+. .+++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            8887777778888888888888875 455544333 356788888888876 45554332 233 3578888888864  


Q ss_pred             CCCHhHHHhh-cCCCCCCEEEccCC-ccChHHHHHHhcCCCCCeEEecCC-CCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711          359 QITDTGLAAL-TSLTGLTHLDLFGA-RITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       359 ~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                      .+++.+...+ ..+|+|++|++++| .+++.....+.++++|++|++++| .+++.+...+..+++|+.|++++|  +++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d  238 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD  238 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCH
Confidence            4565554433 46788888888886 466666667778888888888885 577777777778888888888887  343


Q ss_pred             hhHH-HHhcCCCCcEEecccCccchhhHhhc
Q 010711          436 KTLE-LISGLTGLVSLNVSNSRITSAGLRHL  465 (503)
Q Consensus       436 ~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l  465 (503)
                      .... ....+|+|+   +..++++...+..+
T Consensus       239 ~~l~~l~~~lp~L~---i~~~~ls~~~~~~~  266 (284)
T d2astb2         239 GTLQLLKEALPHLQ---INCSHFTTIARPTI  266 (284)
T ss_dssp             TCHHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred             HHHHHHHHhCcccc---ccCccCCCCCCCcc
Confidence            3333 334566664   45556665544333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.2e-19  Score=153.96  Aligned_cols=197  Identities=21%  Similarity=0.170  Sum_probs=98.4

Q ss_pred             CCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeecc
Q 010711          253 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS  332 (503)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  332 (503)
                      .+.+++.+++.++. .|..+  .++++.|+|++|.++...+..|..+++|++|++++|.+....  .+..+++|+.|+  
T Consensus        11 ~~~~v~C~~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~--   83 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLD--   83 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEE--
T ss_pred             CCeEEEccCCCCCe-eCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccc--
Confidence            34445555554442 12111  135566666666555544445555555666666555544321  123344444444  


Q ss_pred             CCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhH
Q 010711          333 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       333 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                                            +++|+++.. +..+..+++|+.|+++++.+.......+..+++++.|.+++|.+....
T Consensus        84 ----------------------Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          84 ----------------------LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             ----------------------CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ----------------------ccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceec
Confidence                                  444444332 123334455555555555444443444444555555555555555444


Q ss_pred             HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCC
Q 010711          413 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       413 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  481 (503)
                      +..+..++.++.+++++| +++...+..+..+++|+.|+|++|+++.+ |+.+..+++|+.|++++|++
T Consensus       141 ~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccccchhcccccc-cccccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCCC
Confidence            444455555555555555 55555555555555566666665555543 33334455566666665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.5e-17  Score=141.28  Aligned_cols=198  Identities=22%  Similarity=0.140  Sum_probs=122.1

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEE
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL  136 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  136 (503)
                      ..+..++.++++++. .|..++  +++++|+|++| .+......+|..+++|++|++++|.. +.. + .++.+++|++|
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l-~-~~~~l~~L~~L   82 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL-TKL-Q-VDGTLPVLGTL   82 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCC-CEE-E-CCSCCTTCCEE
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCC-cCCCcCHHHhhccccccccccccccc-ccc-c-ccccccccccc
Confidence            344556777777763 344332  46888888886 56666666777888888888888753 321 2 24567777777


Q ss_pred             eccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCCC
Q 010711          137 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV  216 (503)
Q Consensus       137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  216 (503)
                      ++++| .+...+..+..+++|+.|+++++. ........+..+.++++|++.++.+.......+..++.++.+++++|.+
T Consensus        83 ~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          83 DLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             ECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccc-cccccccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence            77775 344445556667777777777644 3333445555666777777776666655555556666666666666666


Q ss_pred             cHHHHHHhhCCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCC
Q 010711          217 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI  264 (503)
Q Consensus       217 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  264 (503)
                      ....+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|+.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred             cccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCC
Confidence            55444455566666666666666652 344444555666666665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-16  Score=136.82  Aligned_cols=186  Identities=30%  Similarity=0.393  Sum_probs=114.1

Q ss_pred             CCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeec
Q 010711          276 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL  355 (503)
Q Consensus       276 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  355 (503)
                      .+|+.|.+.+|.+.+.  ..+..+++|++|++++|.+....  .+..+++++.+.+.++.+++.  ..+..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            3455555555544432  22445555555555555544322  245556666666665555432  23556667777777


Q ss_pred             CCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCCh
Q 010711          356 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD  435 (503)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  435 (503)
                      +++.....  ..+...+.++.+.++++.+....  .+..+++|+.|.+++|.+.+..  .+.++++|+.|++++| .++.
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n-~l~~  187 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN-KISD  187 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCC
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCC-ccCC
Confidence            66655542  23455667777777776665432  3556777788888777766532  3667778888888887 6666


Q ss_pred             hhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEecc
Q 010711          436 KTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES  478 (503)
Q Consensus       436 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  478 (503)
                      ..  .+.++++|+.|++++|+++++.  .+..+++|+.|++++
T Consensus       188 l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             Ch--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            43  3677788888888888877754  366778888888763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=2.3e-15  Score=137.28  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=132.5

Q ss_pred             HhhCCCCCCEEEccCCCCChhhhHhh----hcCCCCCEEEccCCCCCh----------HHHHHhhCCCCCCEEEccCCCC
Q 010711          223 SLSALGSLFYLNLNRCQLSDDGCEKF----SKIGSLKVLNLGFNEITD----------ECLVHLKGLTNLESLNLDSCGI  288 (503)
Q Consensus       223 ~l~~l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~----------~~~~~l~~~~~L~~L~l~~~~~  288 (503)
                      .+.....++.|++++|.+.......+    ...++|+.++++++....          .....+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            34455667777777776655443333    345666777666543211          0112234455666666666655


Q ss_pred             ChhH----HHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH-HHHHHhCCCCCCEeecCCCCCCHh
Q 010711          289 GDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITDT  363 (503)
Q Consensus       289 ~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~  363 (503)
                      +...    ...+...++|++|+++++.+.......+...  +          ... ........+.|+.+.++++.+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l----------~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--L----------QELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--H----------HHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccc--c----------cccccccccccCcccceeeccccccccc
Confidence            4432    2223345555556555554433221111000  0          000 000112455666666666666543


Q ss_pred             HH----HhhcCCCCCCEEEccCCccChHHH-----HHHhcCCCCCeEEecCCCCChhHHH----hhhcCCCCceeeccCC
Q 010711          364 GL----AALTSLTGLTHLDLFGARITDSGA-----AYLRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQN  430 (503)
Q Consensus       364 ~~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~  430 (503)
                      +.    ..+..++.|+.|++++|.+.....     ..+..+++|+.|++++|.+++.+..    .+..+++|+.|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            32    223455667777777766665432     2235566777777777776554432    3345677777777777


Q ss_pred             CCCChhhHHHH----hc--CCCCcEEecccCccchhhHhh----c-cCCcccceEEeccCCCCH
Q 010711          431 CNLTDKTLELI----SG--LTGLVSLNVSNSRITSAGLRH----L-KPLKNLRSLTLESCKVTA  483 (503)
Q Consensus       431 ~~l~~~~~~~~----~~--l~~L~~L~l~~~~~~~~~~~~----l-~~~~~L~~L~l~~~~~~~  483 (503)
                       .++......+    ..  .+.|+.|++++|.+...+...    + .++++|++|++++|.+.+
T Consensus       254 -~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         254 -LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             -CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             -ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence             6666544333    22  356888888888877654432    2 246788888888887755

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=1.6e-14  Score=131.71  Aligned_cols=251  Identities=20%  Similarity=0.236  Sum_probs=158.6

Q ss_pred             HhhhcCCCCCEEEcCCCCCcHHHHHH----hhCCCCCCEEEccCCCCChh----------hhHhhhcCCCCCEEEccCCC
Q 010711          198 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLSDD----------GCEKFSKIGSLKVLNLGFNE  263 (503)
Q Consensus       198 ~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~~~  263 (503)
                      ..+.....++.|++++|.+.......    +...++|+.+++.++.....          ....+...++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            44577889999999999887654444    44678999999987654321          22344567899999999998


Q ss_pred             CChHH----HHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChH
Q 010711          264 ITDEC----LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG  339 (503)
Q Consensus       264 ~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  339 (503)
                      +....    ...+...++|+.|++++|.++......+...  +..+         .........+.|+.+.+.++.+.+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccccccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeeccccccccc
Confidence            77543    3345678999999999998865443333210  0000         0011123345556666655555432


Q ss_pred             HH----HHHhCCCCCCEeecCCCCCCHhHH-----HhhcCCCCCCEEEccCCccChHHH----HHHhcCCCCCeEEecCC
Q 010711          340 SL----RKLAGLSSLKSLNLDARQITDTGL-----AALTSLTGLTHLDLFGARITDSGA----AYLRNFKNLRSLEICGG  406 (503)
Q Consensus       340 ~~----~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~  406 (503)
                      ..    ..+..++.|++|++++|.+...+.     ..+..+++|+.|++++|.++....    ..+..+++|++|++++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            22    233456667777777776665432     224456777777777777665432    34456777888888888


Q ss_pred             CCChhHHHhhh------cCCCCceeeccCCCCCChhhHH----HHh-cCCCCcEEecccCccchh
Q 010711          407 GLTDAGVKHIK------DLSSLTLLNLSQNCNLTDKTLE----LIS-GLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       407 ~~~~~~~~~~~------~~~~L~~L~l~~~~~l~~~~~~----~~~-~l~~L~~L~l~~~~~~~~  460 (503)
                      .+++.+...+.      ..+.|++|++++| +++.....    .+. ++++|+.|++++|++.+.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            77776554442      1356888888888 67664433    232 477888888888887653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.4e-16  Score=132.92  Aligned_cols=188  Identities=28%  Similarity=0.391  Sum_probs=108.6

Q ss_pred             CCCCCCEEEccCCCCChhhhHhhhcCCCCCEEEccCCCCChHHHHHhhCCCCCCEEEccCCCCChhHHHHHhcCCCCCEE
Q 010711          226 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL  305 (503)
Q Consensus       226 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  305 (503)
                      .+.+|+.|++.++.+...  +.+..+++|+.|++++|.+....  .+..+++++.+.+.++.++..              
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--------------  100 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--------------  100 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--------------
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--------------
Confidence            344666666666665542  33555666666666665554322  144555555555555544322              


Q ss_pred             ecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccC
Q 010711          306 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT  385 (503)
Q Consensus       306 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  385 (503)
                                  ..+..+++|+.+.+.++.....  ..+...+.++.+.++++.+...  ..+..+++|+.|++++|.+.
T Consensus       101 ------------~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2         101 ------------SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             ------------GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             ------------cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence                        1233444555555544433321  1233455666666666555442  22445667777777777665


Q ss_pred             hHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEeccc
Q 010711          386 DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN  454 (503)
Q Consensus       386 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~  454 (503)
                      ...  .+.++++|++|++++|.+++.  ..+..+++|+.|++++| +++...  .+.++++|+.|++++
T Consensus       165 ~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N-~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         165 DLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEE
T ss_pred             cch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCC-cCCCCc--ccccCCCCCEEEeeC
Confidence            432  356677777777777777653  23667788888888887 677655  367788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.4e-15  Score=126.24  Aligned_cols=164  Identities=29%  Similarity=0.363  Sum_probs=110.9

Q ss_pred             CCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEc
Q 010711          300 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL  379 (503)
Q Consensus       300 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  379 (503)
                      .++++|++.++.+...  ..++.+++|++|++++|.+++..  .++.+++|+.|++++|++++.  ..+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--cccccccccccccc
Confidence            3455566655554432  12455666777777666665532  245677777777777777653  24667777888888


Q ss_pred             cCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          380 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      ++|.+...  ..+.++++++.+++++|.+++.  ..+..+++|+.+++++| .++...  .+.++++|++|++++|.+++
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n-~l~~i~--~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--cccccccccccccccccccccc--ccccccccccccccccc-cccccc--cccCCCCCCEEECCCCCCCC
Confidence            77766553  2466778888888888877653  34566788888888888 666644  36778888888888888876


Q ss_pred             hhHhhccCCcccceEEecc
Q 010711          460 AGLRHLKPLKNLRSLTLES  478 (503)
Q Consensus       460 ~~~~~l~~~~~L~~L~l~~  478 (503)
                      +  ..+..+++|++|+|++
T Consensus       193 l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 L--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             C--GGGTTCTTCSEEEEEE
T ss_pred             C--hhhcCCCCCCEEEccC
Confidence            5  2577788888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2e-15  Score=125.54  Aligned_cols=127  Identities=35%  Similarity=0.514  Sum_probs=53.5

Q ss_pred             CCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeE
Q 010711          322 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL  401 (503)
Q Consensus       322 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  401 (503)
                      .+++|++|++++|.+++..  .+..+++|++|++++|.+....  .+..++.|+.+++++|.....  ..+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCcc--cccCCccccccccccccccccc--ccccccccccccccccccccc--cccchhhhhHHh
Confidence            3344444444444443321  1344444444444444443321  233444444444444433332  123344444444


Q ss_pred             EecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccch
Q 010711          402 EICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS  459 (503)
Q Consensus       402 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  459 (503)
                      ++++|.+...  ..+..+++|+.|++.+| +++...  .+.++++|+.|++++|++++
T Consensus       134 ~l~~n~l~~~--~~l~~~~~L~~L~l~~n-~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         134 ELSSNTISDI--SALSGLTSLQQLNFSSN-QVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhccc--ccccccccccccccccc-cccCCc--cccCCCCCCEEECCCCCCCC
Confidence            4444444332  12334444444444444 343322  24444444444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.3e-15  Score=126.79  Aligned_cols=161  Identities=32%  Similarity=0.431  Sum_probs=131.9

Q ss_pred             CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      +++++.|++.++.+.+.  ..+..+++|++|++++|.+++..  .+..+++|+.|++++|.+....  .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc--cccccccccccc
Confidence            46777788877777653  34678999999999999998754  4789999999999999887754  478899999999


Q ss_pred             ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCC
Q 010711          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      ++++.+...  ..+..+++|+.|++++| .+....  .+..+++|+.|++.+|.+++..  .+.++++|++|++++|+++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSN-TISDIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhh-hhcccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            999987764  34778899999999999 676643  5788999999999999998863  4789999999999999998


Q ss_pred             HHHHHHHHhcCCCCcccc
Q 010711          483 ANDIKRLQSRDLPNLVSF  500 (503)
Q Consensus       483 ~~~~~~~~~~~~~~L~~l  500 (503)
                      ...  .+.  .+++|++|
T Consensus       186 ~i~--~l~--~L~~L~~L  199 (199)
T d2omxa2         186 DIS--VLA--KLTNLESL  199 (199)
T ss_dssp             CCG--GGG--GCTTCSEE
T ss_pred             CCc--ccc--CCCCCCcC
Confidence            743  344  78888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.1e-14  Score=122.16  Aligned_cols=163  Identities=26%  Similarity=0.332  Sum_probs=105.7

Q ss_pred             CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChhhHHHhhCCCCCCeeeccCCCCChHHHHHHhCCCCCCEeecC
Q 010711          277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD  356 (503)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  356 (503)
                      +|+.|+++++.+....  .+..+++|++|++++|.+.+..  .++.+++|+.|++++|.+++.  ..+..+++|+.+++.
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccccc
Confidence            4555555555443321  2445556666666666554432  245566666666666666542  235667777777777


Q ss_pred             CCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChh
Q 010711          357 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK  436 (503)
Q Consensus       357 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  436 (503)
                      ++.+...  ..+..++.++.+.+++|.+++.  ..+..+++|+.+++++|.+++..  .+..+++|+.|++++| .++..
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS-CCCBC
T ss_pred             ccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCC-CCCCC
Confidence            7766542  3456677788888877776653  24566788888888888877643  3677888888888888 67764


Q ss_pred             hHHHHhcCCCCcEEeccc
Q 010711          437 TLELISGLTGLVSLNVSN  454 (503)
Q Consensus       437 ~~~~~~~l~~L~~L~l~~  454 (503)
                      .  .+.++++|+.|+|++
T Consensus       194 ~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCSEEEEEE
T ss_pred             h--hhcCCCCCCEEEccC
Confidence            3  577888888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.2e-16  Score=133.24  Aligned_cols=201  Identities=19%  Similarity=0.149  Sum_probs=111.0

Q ss_pred             CCCEEEccCCCCChhHHHHHhcCCCCCEEecCCCccChh-hHHHhhCCCCCCeeeccC-CCCChHHHHHHhCCCCCCEee
Q 010711          277 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN  354 (503)
Q Consensus       277 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  354 (503)
                      ++++|+++++.++.....+|.++++|++|++++|.+... ....+..++.++.+.+.. +.+....+..+.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            344444444444333333344444444444444433221 122334445555554432 233333333445566666666


Q ss_pred             cCCCCCCHhHH-HhhcCCCCCCEEEccCCccChHHHHHHhcC-CCCCeEEecCCCCChhHHHhhhcCCCCceee-ccCCC
Q 010711          355 LDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLN-LSQNC  431 (503)
Q Consensus       355 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-l~~~~  431 (503)
                      +.++.+..... ..+..+..+..+...++.+.......+..+ ..++.|.+++|.++......+. .+.++.+. +++| 
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n-  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNN-  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCT-
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccccc-
Confidence            66665544221 111223344444445555554444444444 3677788888888765444443 35555554 4555 


Q ss_pred             CCChhhHHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccC
Q 010711          432 NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC  479 (503)
Q Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  479 (503)
                      +++..+...|.++++|+.|++++|+++.+++..+.++++|+.+++...
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            788777777888999999999999998877777888888888877653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.9e-14  Score=114.52  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=85.0

Q ss_pred             CCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCcee
Q 010711          346 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL  425 (503)
Q Consensus       346 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  425 (503)
                      +..++++|++++|+++... ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4556777777777776642 3334567777777777777654  235667777777777777766555455567777777


Q ss_pred             eccCCCCCChhh-HHHHhcCCCCcEEecccCccchhh---HhhccCCcccceEEeccCCCCHH
Q 010711          426 NLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSLTLESCKVTAN  484 (503)
Q Consensus       426 ~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~  484 (503)
                      ++++| .+.... ...+..+++|+.|++++|++.+..   ...+..+|+|+.|+  +.+++..
T Consensus        93 ~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~  152 (162)
T d1a9na_          93 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKLK  152 (162)
T ss_dssp             ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCHH
T ss_pred             eeccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCHH
Confidence            77777 565543 245666777777777777765543   12345567777654  4455554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.7e-15  Score=127.99  Aligned_cols=201  Identities=15%  Similarity=0.101  Sum_probs=92.9

Q ss_pred             eEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCCCCCcEEecc
Q 010711           60 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE  139 (503)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  139 (503)
                      +.++.++.+++ ..|..+.  +++++|+++++ .+......+|.++++|++|++++|.......+.+|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45556655554 2333221  35677777765 45554455566677777777766653322233445566666666655


Q ss_pred             CcccccC-ccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCC-CCCEEEcCCCCCc
Q 010711          140 RCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQ-KLTLLNLEGCPVT  217 (503)
Q Consensus       140 ~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~  217 (503)
                      .+..+.. .+..+..+++|+++++.++..........+..+..+..+...++.+.......+..++ .++.+++.++.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4333322 2344566666666666654322211112222233333333333344333333333332 4555555555544


Q ss_pred             HHHHHHhhCCCCCCEE-EccCCCCChhhhHhhhcCCCCCEEEccCCCCC
Q 010711          218 AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEIT  265 (503)
Q Consensus       218 ~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  265 (503)
                      ..... ....++++.+ .+.++.+.......|.++++|+.|++++|.++
T Consensus       167 ~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         167 EIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            32111 1222333333 23334444333333444555555555554444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.46  E-value=2.7e-12  Score=117.23  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=29.8

Q ss_pred             CCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccchh
Q 010711          395 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA  460 (503)
Q Consensus       395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  460 (503)
                      +++|++|++++|.+....    ..+++|+.|++++| +++..+    ..+++|+.|++++|++.++
T Consensus       283 ~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N-~L~~l~----~~~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFN-HLAEVP----ELPQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSSC
T ss_pred             CCCCCEEECCCCccCccc----cccCCCCEEECCCC-cCCccc----cccCCCCEEECcCCcCCCC
Confidence            455666666665554321    12455666666666 455432    1234566666666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=113.50  Aligned_cols=105  Identities=20%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             CCCCCeeeccCCCCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          323 LTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       323 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      +.++++|++++|.++.. +..+..+++|+.|++++|.++..  +.+..+++|++|++++|.++..++..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34455555555544432 12223344555555555554432  2344445555555555554444333334455555555


Q ss_pred             ecCCCCChhH-HHhhhcCCCCceeeccCC
Q 010711          403 ICGGGLTDAG-VKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       403 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~  430 (503)
                      +++|.+.+.. ...+..+++|+.|++++|
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             eccccccccccccccccccccchhhcCCC
Confidence            5555544322 123444455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.42  E-value=9.7e-12  Score=113.49  Aligned_cols=136  Identities=15%  Similarity=0.082  Sum_probs=78.2

Q ss_pred             CCeeEEEccCCCCChhhhhhccCCCCCCEEecCCCeecChhhHHHhhCCCCCCEEEcCCCccccHHHHHHHhCC-CCCcE
Q 010711           57 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL-INLVK  135 (503)
Q Consensus        57 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~  135 (503)
                      .++++|++++++++. .|.   ..++|++|++++| .++.. +   ....+|+.|++.++.. +.     +..+ +.|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N-~l~~l-p---~~~~~L~~L~l~~n~l-~~-----l~~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCN-SLTEL-P---ELPQSLKSLLVDNNNL-KA-----LSDLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS-CCSSC-C---CCCTTCCEEECCSSCC-SC-----CCSCCTTCCE
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCC-CCccc-c---cchhhhhhhhhhhccc-ch-----hhhhcccccc
Confidence            468888999888763 332   3468888988876 55533 1   1346788888887753 21     2233 35788


Q ss_pred             EeccCcccccCccccccCCccccEeeccCCcCCCccccccccCCCCCCEEEeecccCCchhHHhhhcCCCCCEEEcCCCC
Q 010711          136 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP  215 (503)
Q Consensus       136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  215 (503)
                      |++++|. +...+ .++.+++|++|++.++....     .......+..+.+.......  ...+..++.++.+.+.++.
T Consensus       103 L~L~~n~-l~~lp-~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         103 LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             EECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccc-ccccc-chhhhccceeeccccccccc-----cccccccccchhhccccccc--cccccccccceeccccccc
Confidence            8887753 43333 34667777777777644321     11123455556554433321  2234555666666666654


Q ss_pred             C
Q 010711          216 V  216 (503)
Q Consensus       216 ~  216 (503)
                      .
T Consensus       174 ~  174 (353)
T d1jl5a_         174 L  174 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=2.7e-14  Score=117.86  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             CCCCEeecCCCCCCH-hHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceee
Q 010711          348 SSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN  426 (503)
Q Consensus       348 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  426 (503)
                      +++++|++++|.++. .....|..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            345555555555543 2223344455555555555554444444444455555555555555544444444455555555


Q ss_pred             ccCCCCCChhhHHHHhcCCCCcEEecccCcc
Q 010711          427 LSQNCNLTDKTLELISGLTGLVSLNVSNSRI  457 (503)
Q Consensus       427 l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  457 (503)
                      |++| .++.+.+..|.++++|++|+|++|++
T Consensus       109 L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         109 LYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCc-cccccCHHHhcCCccccccccccccc
Confidence            5555 44444444444555555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.9e-13  Score=102.04  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=64.2

Q ss_pred             EEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccC
Q 010711          376 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS  455 (503)
Q Consensus       376 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~  455 (503)
                      .|++++|.++...  .+.++++|++|++++|.++.. +..+..+++|+.|++++| .++...  .+..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N-~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccc-cccccC--ccccccccCeEECCCC
Confidence            4555555555432  245556666666666666543 234555666666666666 555542  3556666666666666


Q ss_pred             ccchhh-HhhccCCcccceEEeccCCCCHHH-HHHHHhcCCCCcccc
Q 010711          456 RITSAG-LRHLKPLKNLRSLTLESCKVTAND-IKRLQSRDLPNLVSF  500 (503)
Q Consensus       456 ~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~l  500 (503)
                      ++.+.. ...+..+++|+.|++++|+++... .+.-....+|+|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            665543 244556666666666666654321 111111355665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.2e-12  Score=98.66  Aligned_cols=118  Identities=24%  Similarity=0.316  Sum_probs=83.1

Q ss_pred             CEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCC
Q 010711          351 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       351 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  430 (503)
                      +.|++++|.++..  ..+..+++|++|++++|.++..+ ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~lp-~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC--cccccCCCCCEEECCCCccCcch-hhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            4577777777653  24567778888888888777653 3567788888888888888764  24677888888888888


Q ss_pred             CCCChhh-HHHHhcCCCCcEEecccCccchhh---HhhccCCcccceE
Q 010711          431 CNLTDKT-LELISGLTGLVSLNVSNSRITSAG---LRHLKPLKNLRSL  474 (503)
Q Consensus       431 ~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L  474 (503)
                       .++... ...+..+++|+.|++++|++....   ......+|+|+.|
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             666543 356778888888888888876542   1223446777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=6.5e-13  Score=109.39  Aligned_cols=126  Identities=18%  Similarity=0.218  Sum_probs=91.3

Q ss_pred             CEEecCCCccChhhHHHhhCCCCCCeeeccCCCCCh-HHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccC
Q 010711          303 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG  381 (503)
Q Consensus       303 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  381 (503)
                      +.++.+++.+...+ ..+  .+++++|++++|.++. .....|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP-~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccC-CCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555444322 111  2578888888887764 3345567788888888888888777667777788888888888


Q ss_pred             CccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCC
Q 010711          382 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC  431 (503)
Q Consensus       382 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  431 (503)
                      |++...++.+|.++++|++|+|++|.++...+..|..+++|++|++++|+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            88887777777888888888888888887777777788888888888873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=7e-13  Score=109.21  Aligned_cols=149  Identities=22%  Similarity=0.237  Sum_probs=101.3

Q ss_pred             CCCeeeccCC--CCChHHHHHHhCCCCCCEeecCCCCCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEE
Q 010711          325 NLESINLSFT--GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE  402 (503)
Q Consensus       325 ~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  402 (503)
                      .++.+.+.+.  .+.. .+..+..+++|++|++++|.++..  ..+..+++|+.|++++|.++..+ .....+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~~-l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCCC-CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchhh-hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccccc-ccccccccccccc
Confidence            4555555543  2322 234577788888888888887764  34667788888888888776542 2233456788888


Q ss_pred             ecCCCCChhHHHhhhcCCCCceeeccCCCCCChhh-HHHHhcCCCCcEEecccCccchhhHh----------hccCCccc
Q 010711          403 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNL  471 (503)
Q Consensus       403 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----------~l~~~~~L  471 (503)
                      +++|.++..  ..+..+++|+.|++++| .++... ...+.++++|+.|++++|++....+.          .+..+|+|
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             ccccccccc--ccccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            888888764  34667788888888888 677654 35677888888888888877654332          14567788


Q ss_pred             ceEEeccCCCC
Q 010711          472 RSLTLESCKVT  482 (503)
Q Consensus       472 ~~L~l~~~~~~  482 (503)
                      +.|+  +.+++
T Consensus       177 ~~LD--~~~I~  185 (198)
T d1m9la_         177 KKLD--GMPVD  185 (198)
T ss_dssp             CEES--SGGGT
T ss_pred             CEeC--CccCC
Confidence            8764  55554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=4.9e-13  Score=110.16  Aligned_cols=109  Identities=27%  Similarity=0.282  Sum_probs=54.3

Q ss_pred             hhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCC
Q 010711          367 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG  446 (503)
Q Consensus       367 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~  446 (503)
                      .+..+++|+.|++++|.++...  .+..+++|+.|++++|.++.. +.....+++|+.|++++| .++...  .+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N-~i~~l~--~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEE-ECCCHH--HHHHHHH
T ss_pred             HHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccc-cccccccccccccccccc-cccccc--ccccccc
Confidence            3444555555555555555431  244555555555555555432 112222345555555555 444432  3444555


Q ss_pred             CcEEecccCccchhhH-hhccCCcccceEEeccCCC
Q 010711          447 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKV  481 (503)
Q Consensus       447 L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~  481 (503)
                      |+.|++++|+++.... ..+..+++|+.|++++|++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcc
Confidence            5555555555554432 3445555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=91.09  Aligned_cols=105  Identities=20%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             CEEEccCCccChHHHHHHhcCCCCCeEEecCC-CCChhHHHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecc
Q 010711          375 THLDLFGARITDSGAAYLRNFKNLRSLEICGG-GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS  453 (503)
Q Consensus       375 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  453 (503)
                      +.++.+++..... +..+..+++|++|+++++ .++......|..+++|+.|++++| +++.+.+.+|.++++|+.|+|+
T Consensus        11 ~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceecc
Confidence            3344444433332 223344556666666544 355555556666677777777776 6666666667777777777777


Q ss_pred             cCccchhhHhhccCCcccceEEeccCCCC
Q 010711          454 NSRITSAGLRHLKPLKNLRSLTLESCKVT  482 (503)
Q Consensus       454 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  482 (503)
                      +|++..+....+.. .+|++|+|++|++.
T Consensus        89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhcc-ccccccccCCCccc
Confidence            77776655544433 35777777777663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.2e-10  Score=89.91  Aligned_cols=86  Identities=22%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             HhCCCCCCEeecCCC-CCCHhHHHhhcCCCCCCEEEccCCccChHHHHHHhcCCCCCeEEecCCCCChhHHHhhhcCCCC
Q 010711          344 LAGLSSLKSLNLDAR-QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL  422 (503)
Q Consensus       344 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  422 (503)
                      +..+++|++|++.++ .++.....+|..+++|+.|++++|+++...+.+|..+++|++|++++|.++......+.. ..|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccc
Confidence            344555555555443 355444445555555566665555555555555555555555555555555443333332 245


Q ss_pred             ceeeccCC
Q 010711          423 TLLNLSQN  430 (503)
Q Consensus       423 ~~L~l~~~  430 (503)
                      +.|+|++|
T Consensus       106 ~~L~L~~N  113 (156)
T d2ifga3         106 QELVLSGN  113 (156)
T ss_dssp             CEEECCSS
T ss_pred             cccccCCC
Confidence            55555555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.36  E-value=4.3e-06  Score=65.71  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             CCCCCCEEEccCCccChHH----HHHHhcCCCCCeEEecCCCCChhHHHh----hhcCCCCceeeccCC
Q 010711          370 SLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH----IKDLSSLTLLNLSQN  430 (503)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~  430 (503)
                      ..+.|++|++++|.+.+..    ...+...+.|++|++++|.+++.+...    +...++|+.|++++|
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            4444555555555444332    223344555666666666555544332    223355555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=6.5e-06  Score=64.61  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             CCCCCCeeeccCC-CCChHHH----HHHhCCCCCCEeecCCCCCCHhHH----HhhcCCCCCCEEEccCCccChHHHH--
Q 010711          322 GLTNLESINLSFT-GISDGSL----RKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA--  390 (503)
Q Consensus       322 ~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~--  390 (503)
                      +.+.|++|+++++ .+++...    ..+...+.|++|++++|.+.+.+.    ..+...+.|+.|++++|.+...+..  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455555555543 3444322    233445666666666666655433    2333456677777777766665533  


Q ss_pred             --HHhcCCCCCeEEecCCCCC---hhH----HHhhhcCCCCceeeccCC
Q 010711          391 --YLRNFKNLRSLEICGGGLT---DAG----VKHIKDLSSLTLLNLSQN  430 (503)
Q Consensus       391 --~~~~~~~L~~L~l~~~~~~---~~~----~~~~~~~~~L~~L~l~~~  430 (503)
                        ++...++|++|++++|.+.   +.+    ...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              3355667777777766432   222    222333456666655544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4e-07  Score=71.39  Aligned_cols=66  Identities=21%  Similarity=0.185  Sum_probs=37.4

Q ss_pred             HhcCCCCCeEEecCCCCChhH--HHhhhcCCCCceeeccCCCCCChhhHHHHhcCCCCcEEecccCccc
Q 010711          392 LRNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT  458 (503)
Q Consensus       392 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  458 (503)
                      ...+++|++|++++|.+++..  ...+..+++|+.|++++| .++......+.+..+|+.|++++|++.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcC
Confidence            345667777777777665532  233455666666666666 555544333334445666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.15  E-value=3.2e-05  Score=60.53  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             CCCCCCEEEccCCccChHHHH----HHhcCCCCCeEEecCCCCChhH
Q 010711          370 SLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDAG  412 (503)
Q Consensus       370 ~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~  412 (503)
                      ..+.|++|++++|.+.+....    .+...++++.++++++.+.+.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            444555555555544443322    2344555556665555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.3e-07  Score=70.68  Aligned_cols=84  Identities=20%  Similarity=0.229  Sum_probs=46.4

Q ss_pred             hcCCCCceeeccCCCCCChhh--HHHHhcCCCCcEEecccCccchhhHhhccCCcccceEEeccCCCCH-----HHHHHH
Q 010711          417 KDLSSLTLLNLSQNCNLTDKT--LELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA-----NDIKRL  489 (503)
Q Consensus       417 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~  489 (503)
                      ..++.|++|++++| +++...  ...+..+++|+.|++++|.+.+...-......+|+.|++++|+++.     ...+..
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            44566666666666 555432  2345556666666666666666544233344456666666666542     233333


Q ss_pred             HhcCCCCccccc
Q 010711          490 QSRDLPNLVSFR  501 (503)
Q Consensus       490 ~~~~~~~L~~l~  501 (503)
                      ....+|+|+.|+
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            335666666553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.04  E-value=4.2e-05  Score=59.85  Aligned_cols=110  Identities=20%  Similarity=0.175  Sum_probs=57.8

Q ss_pred             hCCCCCCeeeccC-CCCChHHHH----HHhCCCCCCEeecCCCCCCHhHHH----hhcCCCCCCEEEccCCccChHHHH-
Q 010711          321 SGLTNLESINLSF-TGISDGSLR----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAA-  390 (503)
Q Consensus       321 ~~~~~L~~L~l~~-~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-  390 (503)
                      .+.|.|++|.+.+ +.+++....    ++...++|++|++++|.++..+..    .+...++++.+++.+|.+...+.. 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3445566666654 345443332    233556666666666666654433    233456777777777776665533 


Q ss_pred             ---HHhcCCCCCeEEec--CCCCChhHHHhh----hcCCCCceeeccCC
Q 010711          391 ---YLRNFKNLRSLEIC--GGGLTDAGVKHI----KDLSSLTLLNLSQN  430 (503)
Q Consensus       391 ---~~~~~~~L~~L~l~--~~~~~~~~~~~~----~~~~~L~~L~l~~~  430 (503)
                         .+...++|+.++++  +|.+.+.+...+    ...++|+.|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               33455666655443  445555443322    23455555555443