Citrus Sinensis ID: 010740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MGMASASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEcc
Coil and Loop (DISEMBL)
mgmasasaslsfsssllpsplphphdtktnkhraqvpnfnlihcsvtstnkhtsfssESAVAAKKRLWkegeypgvsetsipgyrskrtpikNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMlkeqpfyqpkegTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQmktlpncqpdvyTYSTLIKACVDAMRFELIETLYQdmdersvtpntvtqnivlggygkagmfDQMERVLSGMlesatckpdvwtmNTILSVFANKGQVDMMERWYEKFRnfgidpetrTFNILIGAYGKKRMYDKMSSVMEYMRKLqfpwtsstYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKekhcrpdsetfSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Flexible Loop (DISEMBL)
MGMASASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTStnkhtsfssESAVAAKKRlwkegeypgvsetsipgyrskrtpiknlkkkleRKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYqdmdersvtpnTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFrnfgidpetrtfNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMkekhcrpdsetfSIMTEAYAKEGMNDKVYALEQEKLQMLLEAsghwqqni
Low Complexity Region (SEG)
MGMasasaslsfsssllpsplpHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIknlkkklerkakakaWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Disordered region (IsUnstruct)
*************************************NFNLIHCSV********************************************************KAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR************FSIMTEAYAK**MNDKVYAL*******************
Disordered Region (DISOPRED)
***************LL********************NFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Disordered Region (DISEMBL)
*************SSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTS***************KKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA********
Disordered Region (DISPRO)
**MASASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMASASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q9SQU6	486	Pentatricopeptide repeat-	yes	no	0.904	0.934	0.685	0.0
Q9FKC3	508	Pentatricopeptide repeat-	no	no	0.808	0.799	0.411	5e-90
Q9SCP4	447	Pentatricopeptide repeat-	no	no	0.782	0.879	0.387	3e-87
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.695	0.619	0.288	6e-42
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.683	0.418	0.320	2e-41
Q9LW84	642	Pentatricopeptide repeat-	no	no	0.675	0.528	0.272	2e-32
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.743	0.432	0.242	9e-32
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.659	0.533	0.256	7e-31
O64624	822	Pentatricopeptide repeat-	no	no	0.673	0.411	0.285	3e-30
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.750	0.609	0.246	6e-30

>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/468 (68%), Positives = 388/468 (82%), Gaps = 14/468 (2%)

Query: 24  PHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPG 83
           P   +  +HR    +  ++ C + ++       S      KKRLWK+GE+PG++E     
Sbjct: 18  PEGKRRFRHR----DVGIVRCVLAASK------SSPGSVTKKRLWKDGEFPGITEP---- 63

Query: 84  YRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK 143
              +RTPIKN+KKKL+R++KA  WVNTV ET SD + KKQW QAL+VF+ML+EQ FYQPK
Sbjct: 64  VNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPK 123

Query: 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLN 203
           EGTYMKLLVLLGKSGQP  A+K+F+EM+EEG+EPT ELYTALLAAY R++LID+AF  L+
Sbjct: 124 EGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILD 183

Query: 204 QMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263
           +MK+ P CQPDV+TYSTL+KACVDA +F+L+++LY++MDER +TPNTVTQNIVL GYG+ 
Sbjct: 184 KMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243

Query: 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT 323
           G FDQME+VLS ML S  CKPDVWTMN ILSVF N G++DMME WYEKFRNFGI+PETRT
Sbjct: 244 GRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRT 303

Query: 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383
           FNILIG+YGKKRMYDKMSSVMEYMRKL+FPWT+STYNN+IEAF+D+GDAK+ME TF+QM 
Sbjct: 304 FNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMR 363

Query: 384 AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
           +EGMKADTKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNAVISAC KADDL+
Sbjct: 364 SEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLI 423

Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
           EMERVY RMKE+ C  DS TF IM EAY KEGMNDK+Y LEQE+ +++
Sbjct: 424 EMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLM 471

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score =  332 bits (851), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/413 (41%), Positives = 244/413 (59%), Gaps = 7/413 (1%)

Query: 87  KRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGT 146
           +R   K++ +K  +K   K    TV E+  + +   +W  A+QVFE+L+EQ +Y+P  G 
Sbjct: 95  RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 152

Query: 147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206
           Y+KL+V+LGK  QPE A ++F EM+ EG     E+YTAL++AY R+   D AF  L +MK
Sbjct: 153 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 212

Query: 207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF 266
           +  NCQPDV+TYS LIK+ +    F+ ++ L  DM  + + PNT+T N ++  YGKA MF
Sbjct: 213 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 272

Query: 267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI 326
            +ME  L  ML    CKPD WTMN+ L  F   GQ++MME  YEKF++ GI+P  RTFNI
Sbjct: 273 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 332

Query: 327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG 386
           L+ +YGK   Y KMS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M +E 
Sbjct: 333 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 392

Query: 387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME 446
           +     T C L+  Y  A    K+   +R      I  ++ F+N ++ A  + +   EM+
Sbjct: 393 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 452

Query: 447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ 499
            V + M++K  +PD  T+  M +AY   GM   V     ++L  ++E+ G  Q
Sbjct: 453 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHV-----KELHGVVESVGEAQ 500

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1

 Score =  322 bits (826), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 248/397 (62%), Gaps = 4/397 (1%)

Query: 96  KKLERKAKAKA----WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLL 151
           K +ERKA ++     W   V E   + + + +W  AL++F +L++Q +Y+P+  TY KL 
Sbjct: 42  KGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLF 101

Query: 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC 211
            +LG   QP+ A  +F  M+ EG++PT ++YT+L++ Y ++ L+D+AF TL  MK++ +C
Sbjct: 102 KVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDC 161

Query: 212 QPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER 271
           +PDV+T++ LI  C    RF+L++++  +M    V  +TVT N ++ GYGKAGMF++ME 
Sbjct: 162 KPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMES 221

Query: 272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY 331
           VL+ M+E     PDV T+N+I+  + N   +  ME WY +F+  G+ P+  TFNILI ++
Sbjct: 222 VLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSF 281

Query: 332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT 391
           GK  MY KM SVM++M K  F  T+ TYN VIE F   G  + M+  F +M  +G+K ++
Sbjct: 282 GKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNS 341

Query: 392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR 451
            T+C L+N Y+ AGL  K+ S +R      +  +  F+N +I+A  +A DL  M+ +Y +
Sbjct: 342 ITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQ 401

Query: 452 MKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL 488
           M+E+ C+PD  TF+ M + Y   G+ D V  LE++ +
Sbjct: 402 MEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMI 438

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 5/354 (1%)

Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
           +W Q L+VF  +++Q +Y P  G Y KL+ ++GK GQ  +A  +F+EM   G  P   +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 183 TALLAAYC----RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY 238
            AL+ A+     +   +++    L++MK +  CQP+V TY+ L++A   + + + +  L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 239 QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
           +D+D   V+P+  T N V+  YGK GM  +ME VL+ M  S  CKPD+ T N ++  +  
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 290

Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
           K + + ME+ ++        P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350

Query: 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418
           Y  +I  +   G        FE++          T   ++  Y   GL+ +       AS
Sbjct: 351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410

Query: 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA 472
             ++  + S Y  +  A  KAD   +++ + K+M++    P+   F    E + 
Sbjct: 411 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFG 464

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 169/356 (47%), Gaps = 13/356 (3%)

Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
           +A QVFE +K   F   K  TY  LL + GKS +P+ A KV NEMV  G  P+   Y +L
Sbjct: 297 EAAQVFEEMKAAGFSYDKV-TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSL 355

Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
           ++AY R+ ++DEA    NQM      +PDV+TY+TL+     A + E   +++++M    
Sbjct: 356 ISAYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414

Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC--KPDVWTMNTILSVFANKGQVD 303
             PN  T N  +  YG  G F +M ++     E   C   PD+ T NT+L+VF   G   
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFTEMMKIFD---EINVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 304 MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI 363
            +   +++ +  G  PE  TFN LI AY +   +++  +V   M         STYN V+
Sbjct: 472 EVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVL 531

Query: 364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA---GLFHKVISSVRLASKL 420
            A +  G  +  E    +M     K +  T+C L++ YAN    GL H +   V      
Sbjct: 532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV-- 589

Query: 421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
            I         ++  C K D L E ER +  +KE+   PD  T + M   Y +  M
Sbjct: 590 -IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 168/349 (48%), Gaps = 10/349 (2%)

Query: 132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
           EM  E   + P   TY  L+    K G+ + A ++F+EM +  ++PT ++YT LL  Y +
Sbjct: 222 EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
              +++A     +MK    C P VYTY+ LIK    A R +     Y+DM    +TP+ V
Sbjct: 281 VGKVEKALDLFEEMKR-AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339

Query: 252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL-SVFANKGQVDMMERWYE 310
             N ++   GK G  +++  V S M     C P V + NT++ ++F +K  V  +  W++
Sbjct: 340 FLNNLMNILGKVGRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query: 311 KFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370
           K +   + P   T++ILI  Y K    +K   ++E M +  FP   + Y ++I A   +G
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA---LG 455

Query: 371 DAKHMEYT---FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427
            AK  E     F+++        ++ +  +I  +   G   + +             +V 
Sbjct: 456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query: 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
            YNA++S  +KA  + E   + ++M+E  CR D  + +I+   +A+ G+
Sbjct: 516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGV 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 177/409 (43%), Gaps = 36/409 (8%)

Query: 103 KAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPEL 162
           K K  +N  A  F +   +  W ++L++F+ ++ Q + +P E  Y  ++ LLG+ G  + 
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159

Query: 163 ARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI 222
             +VF+EM  +G+  +   YTAL+ AY RN   + +   L++MK      P + TY+T+I
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVI 218

Query: 223 KACV-DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV--------- 272
            AC    + +E +  L+ +M    + P+ VT N +L      G+ D+ E V         
Sbjct: 219 NACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278

Query: 273 -------------------------LSGMLESATCKPDVWTMNTILSVFANKGQVDMMER 307
                                    L G + S    PD+ + N +L  +A  G +     
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338

Query: 308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS 367
            + + +  G  P   T+++L+  +G+   YD +  +   M+       ++TYN +IE F 
Sbjct: 339 VFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFG 398

Query: 368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427
           + G  K +   F  M  E ++ D +T+  +I      GL       ++  +   I  +  
Sbjct: 399 EGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSK 458

Query: 428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
            Y  VI A  +A    E    +  M E    P  ETF  +  ++A+ G+
Sbjct: 459 AYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score =  135 bits (340), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 165/339 (48%), Gaps = 8/339 (2%)

Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
           +QP E TY  +L ++ KSGQ  LA ++  +M E  I+     Y+ ++   C++  +D AF
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267

Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
              N+M+ +   + D+  Y+TLI+    A R++    L +DM +R +TP+ V  + ++  
Sbjct: 268 NLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326

Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
           + K G   + E +   M++     PD  T  +++  F  + Q+D      +   + G  P
Sbjct: 327 FVKEGKLREAEELHKEMIQRGI-SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGP 385

Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT---SSTYNNVIEAFSDMGDAKHME 376
             RTFNILI  Y K  + D     +E  RK+        + TYN +I+ F ++G  +  +
Sbjct: 386 NIRTFNILINGYCKANLID---DGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAK 442

Query: 377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC 436
             F++M +  ++ D  ++  L++G  + G   K +       K ++  ++  YN +I   
Sbjct: 443 ELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGM 502

Query: 437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG 475
             A  + +   ++  +  K  +PD +T++IM     K+G
Sbjct: 503 CNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541

Arabidopsis thaliana (taxid: 3702)

>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 152/340 (44%), Gaps = 2/340 (0%)

Query: 140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF 199
           Y+P   TY  LL + GK+G    A  V  EM E         Y  L+AAY R     EA 
Sbjct: 312 YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAA 371

Query: 200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG 259
             + +M T     P+  TY+T+I A   A + +    L+  M E    PNT T N VL  
Sbjct: 372 GVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSL 430

Query: 260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP 319
            GK    ++M ++L  M +S  C P+  T NT+L++  NKG    + R + + ++ G +P
Sbjct: 431 LGKKSRSNEMIKMLCDM-KSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489

Query: 320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
           +  TFN LI AYG+       S +   M +  F    +TYN ++ A +  GD +  E   
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVI 549

Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
             M ++G K    ++  ++  YA  G +  +        + QI  +      ++ A  K 
Sbjct: 550 SDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKC 609

Query: 440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
             L   ER +   K+   +PD   F+ M   + +  M D+
Sbjct: 610 RALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 649

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 180/414 (43%), Gaps = 37/414 (8%)

Query: 110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE 169
           TV+   +   LK +  +AL + + + E  F QP E TY  +L  L KSG   LA  +F +
Sbjct: 177 TVSTLINGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSALALDLFRK 235

Query: 170 MVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM------------------------ 205
           M E  I+ +   Y+ ++ + C++   D+A    N+M                        
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295

Query: 206 -----KTL-----PNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI 255
                K L      N  PDV T+S LI   V   +    + LY +M  R + P+T+T N 
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355

Query: 256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF 315
           ++ G+ K     +  ++   M+ S  C+PD+ T + +++ +    +VD   R + +  + 
Sbjct: 356 LIDGFCKENCLHEANQMFDLMV-SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSK 414

Query: 316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM 375
           G+ P T T+N L+  + +    +    + + M     P +  TY  +++   D G+    
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474

Query: 376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA 435
              FE+M    M      +  +I+G  NA       S     S   +  +V  YN +I  
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534

Query: 436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMNDKVYALEQEKL 488
             K   L E + ++++MKE  C PD  T++I+  A+    G+   V  +E+ K+
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
255556562	491	pentatricopeptide repeat-containing prot	0.910	0.930	0.734	0.0
224112076	434	predicted protein [Populus trichocarpa]	0.854	0.988	0.780	0.0
225432159	498	PREDICTED: pentatricopeptide repeat-cont	0.852	0.859	0.784	0.0
147820978	525	hypothetical protein VITISV_025315 [Viti	0.848	0.811	0.788	0.0
449441652	496	PREDICTED: pentatricopeptide repeat-cont	0.910	0.921	0.726	0.0
356565453	488	PREDICTED: pentatricopeptide repeat-cont	0.944	0.971	0.704	0.0
356564951	488	PREDICTED: pentatricopeptide repeat-cont	0.944	0.971	0.702	0.0
15230719	486	pentatricopeptide repeat-containing prot	0.904	0.934	0.685	0.0
297833394	486	EMB2750 [Arabidopsis lyrata subsp. lyrat	0.910	0.940	0.683	0.0
357479161	496	Pentatricopeptide repeat-containing prot	0.926	0.937	0.687	0.0

>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/471 (73%), Positives = 394/471 (83%), Gaps = 14/471 (2%)

Query: 21  LPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETS 80
           L   ++    K R+  P   L+ C+   T          + + KK+ WK+GE+PG +ETS
Sbjct: 21  LAQSNNNCNTKPRSHQPKHTLVLCAYAPT----------STSPKKKHWKQGEFPGFTETS 70

Query: 81  IPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFY 140
            P    +RTPIKN+KKKL+RK KAKAWVNTV E  SD +LKKQWFQAL+VFEMLKEQPFY
Sbjct: 71  PP----RRTPIKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVFEMLKEQPFY 126

Query: 141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
            PKEGTYMKLLVLLG++GQP+ A ++F+EMVEEGIEPT ELYTALLAAYCRN L DEAF 
Sbjct: 127 HPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFS 186

Query: 201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
            L QMKTLP C PDVYTYSTL+KACVDA RFEL+E LYQ+M ER +TPNTVTQNIVL GY
Sbjct: 187 ILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGY 246

Query: 261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
           GKAGM+DQMERVLSGMLES  CKPDVWTMN ILSVF NKGQ+D+ME+WYEKFR+FGI+PE
Sbjct: 247 GKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPE 306

Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
           TRTFNILIGAYGKKRMYDKMSSVME+MRKLQFPWT+STYNNVIEAF+  GD KHMEYTF+
Sbjct: 307 TRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFD 366

Query: 381 QMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD 440
           QM AEGMKADTKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNA+ISAC KA+
Sbjct: 367 QMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAE 426

Query: 441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
           DLMEMERV+KRMK+  C+PDS T+SIM EAY +EGMNDKVY LEQEK  M+
Sbjct: 427 DLMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLEQEKQGMV 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/433 (78%), Positives = 386/433 (89%), Gaps = 4/433 (0%)

Query: 59  SAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDH 118
           S+   KK+ WK+GE+PG ++ S    R +RT IKN+KKKL+RK+KAKAWVNTVAE  +D 
Sbjct: 6   SSTFPKKKHWKQGEFPGFTDAS----RPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDC 61

Query: 119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT 178
           VLKKQW QA+QVFEMLKEQPFYQPKE TYMKLLVLLG+ GQP+ A ++F+EMVEEGIEPT
Sbjct: 62  VLKKQWLQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPT 121

Query: 179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY 238
            ELYTALLAAYCRN+LIDE F  +NQMK+LP CQPDVYTYSTL+KACVDA RFELI+TLY
Sbjct: 122 TELYTALLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLY 181

Query: 239 QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
           Q+MDER ++PNTVTQN+VL GYG+ GM+DQMERVLS MLESA CKPDVWTMN ILSVF N
Sbjct: 182 QEMDERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGN 241

Query: 299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
           +GQ+D+MERWYEKFRNFGI+PETRTFNILIGAYGKKRMYDKMSSVMEYMRK+QFPWT+ST
Sbjct: 242 EGQIDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTST 301

Query: 359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418
           YNNVIEAF+D+GDAK+MEY F+QM AE MKADTKTFCCLINGYANAGLFHKVISSV+LA+
Sbjct: 302 YNNVIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAA 361

Query: 419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
           K +I EN SF+NAVISAC KADDLMEMERV+KRMK+K C PDS T+SIM EAY KEGMND
Sbjct: 362 KFEIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMND 421

Query: 479 KVYALEQEKLQML 491
           K+Y LEQEK +M+
Sbjct: 422 KIYYLEQEKQEMI 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Vitis vinifera]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/432 (78%), Positives = 387/432 (89%), Gaps = 4/432 (0%)

Query: 63  AKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKK 122
            KKRLWK+GE+PG   TS  G RS++TPIKN+KKKL+RK  AKAW NTVAE  SD VLKK
Sbjct: 67  GKKRLWKQGEFPG---TSAEG-RSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKK 122

Query: 123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
           QW QAL+VFEML+EQPFYQPKEGTYMKLLVLLGKSGQP  A ++F+ MVEEG EPT ELY
Sbjct: 123 QWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELY 182

Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMD 242
           TALLA+YCR++LIDEAF  LNQMKTLP CQPDV+TYSTL+KACVDA RFEL+E+LY++MD
Sbjct: 183 TALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMD 242

Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302
            RS+TPNTVTQNIVL GYGKAG FD+ME+VLSGMLES + KPDVWTMNTILS+F NKGQ+
Sbjct: 243 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 302

Query: 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV 362
           ++ME+WYEKFRNFGI+PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT+STYNNV
Sbjct: 303 EIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNV 362

Query: 363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI 422
           IEAFSD+GDAK+MEYTF+QM AEGMKADTKTFCCLI GYANAGLFHKV+SSV+LA K +I
Sbjct: 363 IEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEI 422

Query: 423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA 482
            EN SFYNAVISAC KA+DL+EMERV+ RMK+KHC+PDS T+SIM EAY KEGMNDK+Y 
Sbjct: 423 PENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYD 482

Query: 483 LEQEKLQMLLEA 494
           LEQE+ +M+ + 
Sbjct: 483 LEQERQRMVADG 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/430 (78%), Positives = 386/430 (89%), Gaps = 4/430 (0%)

Query: 62  AAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLK 121
             KKRLWK+GE+PG   TS  G RS++TPIKN+KKKL+RK  AKAW NTVAE  SD VLK
Sbjct: 66  VGKKRLWKQGEFPG---TSAEG-RSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLK 121

Query: 122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPEL 181
           KQW QAL+VFEML+EQPFYQPKEGTYMKLLVLLGKSGQP  A ++F+ MVEEG EPT EL
Sbjct: 122 KQWLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTEL 181

Query: 182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM 241
           YTALLA+YCR++LIDEAF  LNQMKTLP CQPDV+TYSTL+KACVDA RFEL+E+LY++M
Sbjct: 182 YTALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEM 241

Query: 242 DERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ 301
           D RS+TPNTVTQNIVL GYGKAG FD+ME+VLSGMLES + KPDVWTMNTILS+F NKGQ
Sbjct: 242 DVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQ 301

Query: 302 VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNN 361
           +++ME+WYEKFRNFGI+PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT+STYNN
Sbjct: 302 IEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNN 361

Query: 362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ 421
           VIEAFSD+GDAK+MEYTF+QM AEGMKADTKTFCCLI GYANAGLFHKV+SSV+LA K +
Sbjct: 362 VIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFE 421

Query: 422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY 481
           I EN SFYNAVISAC KA+DL+EMERV+ RMK+KHC+PDS T+SIM EAY KEGMNDK+Y
Sbjct: 422 IPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIY 481

Query: 482 ALEQEKLQML 491
            LEQE+ +M+
Sbjct: 482 DLEQERQRMM 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucumis sativus] gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Cucumis sativus]

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/461 (72%), Positives = 392/461 (85%), Gaps = 4/461 (0%)

Query: 37  PNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKK 96
           PN  ++ C+  +  + +   S S+  AKKR WK+GE+PG +ETS      +R P+K +KK
Sbjct: 39  PNSRIVRCAFAAPTRKSPVPSTSSSPAKKRHWKQGEFPGTTETST----RRRAPLKRVKK 94

Query: 97  KLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK 156
           KL+RK  AKAW NTV E  SDH+  K+W QAL+VFEML+EQPFY+PKEGTYMKLLVLLG+
Sbjct: 95  KLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGR 154

Query: 157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVY 216
           SGQP  AR +F+ MV+E  EPTPELYTALLAAYCRN+LID+AF TLN MKTLP CQPDVY
Sbjct: 155 SGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVY 214

Query: 217 TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM 276
           TYS LIKACVD  RFE++E+LY++M ER +TPNTVTQNIVL GYGK G +DQME+VL GM
Sbjct: 215 TYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGM 274

Query: 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336
           LES TC+PDVWTMN ILSVF NKG ++MMERWYEKFRNFGI+PETRTFNILIGAYGKKRM
Sbjct: 275 LESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRM 334

Query: 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396
           YDKMSSVMEYMRKLQFPWT+STYNNVIEAF+D+GDAK+MEYTFEQM AEGM+ADTKTFCC
Sbjct: 335 YDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCC 394

Query: 397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH 456
           LINGYANAGLFHKVI SV+LA KL+I EN SFYNAVISAC KA+DLMEM+RV+KRMK+KH
Sbjct: 395 LINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKH 454

Query: 457 CRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497
           C+PD++T+SIM EAY KEGMND+V+ LE EK Q++  AS +
Sbjct: 455 CQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDNASNN 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Glycine max]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/488 (70%), Positives = 399/488 (81%), Gaps = 14/488 (2%)

Query: 6   ASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKK 65
           AS SLSF S ++PS +PH    KT+ H    P F LI   +            SA A KK
Sbjct: 2   ASMSLSFCSCIVPSRIPHDKSNKTHSHHQ--PTFPLIRFGI------------SAPAVKK 47

Query: 66  RLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWF 125
           R WK+GE+P  S+ S P    ++TP+KNLKKK ++K  AKAWVNTV E+ S+ +  K W 
Sbjct: 48  RHWKKGEFPATSQPSFPNDTRRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWL 107

Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
           QALQVF+ML+EQ FYQPKEGTYMKL+VLLGKSGQP  A ++F  M+EEG+EPTPELYTAL
Sbjct: 108 QALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTAL 167

Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
           LAAYCR+++IDEAF  LN+MK LP CQPDV+TYSTLIK CVDA +F+L+E LY++M ERS
Sbjct: 168 LAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERS 227

Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
           + PNTVTQNIVLGGYGKAGMFDQME+VLS ML S TCKPDVWTMNTI+SVF N GQ+DMM
Sbjct: 228 IMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMM 287

Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
           E+WYEKFR FGI+PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT+STYNNVIEA
Sbjct: 288 EKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEA 347

Query: 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425
           F+D GDAKHME TF+QM AEGMKADTKT CCLINGYANAGLFHKVISSVRLA KL+I EN
Sbjct: 348 FADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPEN 407

Query: 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQ 485
           ++FYNAV+SAC KA+DLMEMERV+KRMK+  C+PD  T++IM EAY KEGMNDK+Y LEQ
Sbjct: 408 ITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQ 467

Query: 486 EKLQMLLE 493
           EK  M+ +
Sbjct: 468 EKQTMMTD 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like [Glycine max]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/488 (70%), Positives = 400/488 (81%), Gaps = 14/488 (2%)

Query: 6   ASASLSFSSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKK 65
           AS SLSF SS++PS +PH    KT+ H    P F LI   +            SA A KK
Sbjct: 2   ASISLSFCSSIVPSRIPHDKSNKTHSHHN--PTFPLIRFGI------------SAPAVKK 47

Query: 66  RLWKEGEYPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWF 125
           R WK+GE+P  S+ S P    ++TP+KNLKKK ++K  AKAWVNTV E+ S+ +  K W 
Sbjct: 48  RHWKKGEFPATSQPSFPNDTRRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWL 107

Query: 126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
           QALQVF+ML+EQ FYQPKEGT MKL+VLLGKSGQP  A ++F  M+EEG+EPTPELYTAL
Sbjct: 108 QALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTAL 167

Query: 186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
           LAAYCR+++IDEAF  LN+MK LP CQPDV+TYSTLIK CVDA +F+L++ LY++M ERS
Sbjct: 168 LAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERS 227

Query: 246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
           +TPNTVTQNIVLGGYGKAGMFDQME+VLS ML+S TCKPDVWTMNTI+SVF N GQ+DM 
Sbjct: 228 ITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMT 287

Query: 306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
           E+WYEKFR FGI+PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT+STYNNVIEA
Sbjct: 288 EKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEA 347

Query: 366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425
           F+D GDAKHME TF+QM AEGMKADTKT CCLINGYANAGLFHKVISSVRLA KL+I EN
Sbjct: 348 FADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPEN 407

Query: 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQ 485
           ++FYNAV+SAC KA+DLMEMERV+KRMK+  C+PD  T++IM EAY KEGMNDK+Y LEQ
Sbjct: 408 ITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQ 467

Query: 486 EKLQMLLE 493
           EK  M+ +
Sbjct: 468 EKQTMMTD 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06430, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2750; Flags: Precursor gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana] gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana] gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana] gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/468 (68%), Positives = 388/468 (82%), Gaps = 14/468 (2%)

Query: 24  PHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPG 83
           P   +  +HR    +  ++ C + ++       S      KKRLWK+GE+PG++E     
Sbjct: 18  PEGKRRFRHR----DVGIVRCVLAASK------SSPGSVTKKRLWKDGEFPGITEP---- 63

Query: 84  YRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK 143
              +RTPIKN+KKKL+R++KA  WVNTV ET SD + KKQW QAL+VF+ML+EQ FYQPK
Sbjct: 64  VNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPK 123

Query: 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLN 203
           EGTYMKLLVLLGKSGQP  A+K+F+EM+EEG+EPT ELYTALLAAY R++LID+AF  L+
Sbjct: 124 EGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILD 183

Query: 204 QMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263
           +MK+ P CQPDV+TYSTL+KACVDA +F+L+++LY++MDER +TPNTVTQNIVL GYG+ 
Sbjct: 184 KMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243

Query: 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT 323
           G FDQME+VLS ML S  CKPDVWTMN ILSVF N G++DMME WYEKFRNFGI+PETRT
Sbjct: 244 GRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRT 303

Query: 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383
           FNILIG+YGKKRMYDKMSSVMEYMRKL+FPWT+STYNN+IEAF+D+GDAK+ME TF+QM 
Sbjct: 304 FNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMR 363

Query: 384 AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
           +EGMKADTKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNAVISAC KADDL+
Sbjct: 364 SEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLI 423

Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
           EMERVY RMKE+ C  DS TF IM EAY KEGMNDK+Y LEQE+ +++
Sbjct: 424 EMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLM 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata] gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/471 (68%), Positives = 388/471 (82%), Gaps = 14/471 (2%)

Query: 24  PHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPG 83
           P   +  +HR    + + + C + ++       S      KKRLWK+GE+PG++E   P 
Sbjct: 18  PEGKRRFRHR----DASFVRCVLAASK------SSPGSVTKKRLWKDGEFPGITEPVNP- 66

Query: 84  YRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK 143
              +RTPIKN+KKKL+R++KA  W NTV ET SD + KKQW QAL+VF+ML+EQ FYQPK
Sbjct: 67  ---RRTPIKNVKKKLDRRSKANGWANTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPK 123

Query: 144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLN 203
           EGTYMKLLVLLGKSGQP  A+K+F+EM+EEG+EPT ELYTALLAAY R++LID+AF  L+
Sbjct: 124 EGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILD 183

Query: 204 QMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA 263
            MK LP CQPDV+TYSTL+KACVDA +F+L+++LY++MDER +TPNTVTQNIVL GYG+ 
Sbjct: 184 TMKGLPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243

Query: 264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT 323
           G FDQME+VLS ML S  CKPDVWTMN ILSVF N G++DMME WYEKFRNFGI+PETRT
Sbjct: 244 GRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRT 303

Query: 324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH 383
           FNILIG+YGKKRMYDKMSSVMEYMRKL+FPWT+STYNN+IEAF+D+GDAK+ME TF+QM 
Sbjct: 304 FNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMR 363

Query: 384 AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM 443
           +EGMKADTKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNAVI+AC KADDL+
Sbjct: 364 SEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVIAACAKADDLI 423

Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA 494
           EMERVY RMKE+ C  DS TF IM EAY KEGMNDK+Y LEQE+ +++  A
Sbjct: 424 EMERVYTRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRA 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/471 (68%), Positives = 390/471 (82%), Gaps = 6/471 (1%)

Query: 23  HPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIP 82
           H   T  N  +  +P    I  +V+S+   T+ +S S+V  KK+ WK+GE+PGVSETS+P
Sbjct: 23  HNKTTHNNPRKPHLP----IFYAVSSSPSKTASASNSSVV-KKKHWKQGEFPGVSETSLP 77

Query: 83  GYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQP 142
              ++R PIKN+KKKL+RK  AKAW NTV E  S+ + KKQW QAL+  +ML+EQ FYQP
Sbjct: 78  S-STRRKPIKNVKKKLDRKNNAKAWANTVTEALSECIDKKQWLQALETLDMLREQSFYQP 136

Query: 143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTL 202
           +EGTYMKL+VLLGKSGQP+ A ++F  M+EEG +PTPELYTALLAAYCR+++IDEA   L
Sbjct: 137 REGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALSIL 196

Query: 203 NQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262
           ++MK  P CQPDV+TYSTLIKACVD  +FELIE LY++M +RS+ PNTVTQNIVL GYGK
Sbjct: 197 DEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGK 256

Query: 263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR 322
           AGMFDQME+VLSGML+SA CKPDVWTMNTI+ VF N GQ+DMME+WYEKFRNFGI+PETR
Sbjct: 257 AGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETR 316

Query: 323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQM 382
           TFNILIG+YGKKRMYDKMSSVMEYMRKLQFPWT+STYNNVIEAF++ GDAK+MEYTF QM
Sbjct: 317 TFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQM 376

Query: 383 HAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL 442
            +EGM+ADTKTFCCLI G+ANAGLFHKVISSV+LA+KL+I  N +FYNAV+SAC KA+DL
Sbjct: 377 RSEGMRADTKTFCCLIKGFANAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDL 436

Query: 443 MEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493
           MEM+RV+ RMK+  C  D  T+SIM EAY KEGMNDK+Y LEQEK  M+ +
Sbjct: 437 MEMDRVFMRMKDTQCPLDDTTYSIMVEAYRKEGMNDKIYYLEQEKQTMITD 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
TAIR|locus:2081041	486	PPR2 "pentatricopeptide repeat	0.898	0.927	0.685	1e-171
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.693	0.618	0.288	1.5e-42
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.683	0.418	0.323	1.6e-41
TAIR|locus:2093472	642	AT3G16010 [Arabidopsis thalian	0.675	0.528	0.272	9e-34
TAIR|locus:2044430	822	AT2G18940 [Arabidopsis thalian	0.699	0.427	0.285	4.9e-31
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.717	0.579	0.254	5.6e-31
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.737	0.429	0.233	1.2e-29
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.677	0.553	0.244	2.2e-29
TAIR|locus:2061310	918	GUN1 "AT2G31400" [Arabidopsis	0.611	0.334	0.279	3.3e-29
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.701	0.552	0.254	5.4e-29

TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1669 (592.6 bits), Expect = 1.0e-171, P = 1.0e-171
 Identities = 316/461 (68%), Positives = 378/461 (81%)

Query:    31 KHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTP 90
             K R +  +  ++ C V + +K    SS  +V  KKRLWK+GE+PG++E   P    +RTP
Sbjct:    21 KRRFRHRDVGIVRC-VLAASK----SSPGSVT-KKRLWKDGEFPGITE---P-VNQRRTP 70

Query:    91 IXXXXXXXXXXXXXXXWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKL 150
             I               WVNTV ET SD + KKQW QAL+VF+ML+EQ FYQPKEGTYMKL
Sbjct:    71 IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query:   151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPN 210
             LVLLGKSGQP  A+K+F+EM+EEG+EPT ELYTALLAAY R++LID+AF  L++MK+ P 
Sbjct:   131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query:   211 CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME 270
             CQPDV+TYSTL+KACVDA +F+L+++LY++MDER +TPNTVTQNIVL GYG+ G FDQME
Sbjct:   191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query:   271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA 330
             +VLS ML S  CKPDVWTMN ILSVF N G++DMME WYEKFRNFGI+PETRTFNILIG+
Sbjct:   251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query:   331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD 390
             YGKKRMYDKMSSVMEYMRKL+FPWT+STYNN+IEAF+D+GDAK+ME TF+QM +EGMKAD
Sbjct:   311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query:   391 TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK 450
             TKTFCCLINGYANAGLFHKVISSV+LA+K +I EN +FYNAVISAC KADDL+EMERVY 
Sbjct:   371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query:   451 RMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML 491
             RMKE+ C  DS TF IM EAY KEGMNDK+Y LEQE+ +++
Sbjct:   431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLM 471

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0048868 "pollen tube development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 102/353 (28%), Positives = 174/353 (49%)

Query:   123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
             +W Q L+VF  +++Q +Y P  G Y KL+ ++GK GQ  +A  +F+EM   G  P   +Y
Sbjct:   112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query:   183 TALLAAYCRN----SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY 238
              AL+ A+         +++    L++MK +  CQP+V TY+ L++A   + + + +  L+
Sbjct:   172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query:   239 QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
             +D+D   V+P+  T N V+  YGK GM  +ME VL+ M  S  CKPD+ T N ++  +  
Sbjct:   232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 290

Query:   299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST 358
             K + + ME+ ++        P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct:   291 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 350

Query:   359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS 418
             Y  +I  +   G        FE++          T   ++  Y   GL+ +       AS
Sbjct:   351 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 410

Query:   419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY 471
               ++  + S Y  +  A  KAD   +++ + K+M++    P+   F    E +
Sbjct:   411 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 1.6e-41, P = 1.6e-41
 Identities = 115/356 (32%), Positives = 171/356 (48%)

Query:   126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
             +A QVFE +K   F   K  TY  LL + GKS +P+ A KV NEMV  G  P+   Y +L
Sbjct:   297 EAAQVFEEMKAAGFSYDKV-TYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSL 355

Query:   186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
             ++AY R+ ++DEA    NQM      +PDV+TY+TL+     A + E   +++++M    
Sbjct:   356 ISAYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAG 414

Query:   246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
               PN  T N  +  YG  G F +M ++    +      PD+ T NT+L+VF   G    +
Sbjct:   415 CKPNICTFNAFIKMYGNRGKFTEMMKIFDE-INVCGLSPDIVTWNTLLAVFGQNGMDSEV 473

Query:   306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS--STYNNVI 363
                +++ +  G  PE  TFN LI AY +   +++  +V  Y R L    T   STYN V+
Sbjct:   474 SGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV--YRRMLDAGVTPDLSTYNTVL 531

Query:   364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA---GLFHKVISSVRLASKL 420
              A +  G  +  E    +M     K +  T+C L++ YAN    GL H +   V      
Sbjct:   532 AALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGV-- 589

Query:   421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
              I         ++  C K D L E ER +  +KE+   PD  T + M   Y +  M
Sbjct:   590 -IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQM 644

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 9.0e-34, P = 9.0e-34
 Identities = 95/349 (27%), Positives = 168/349 (48%)

Query:   132 EMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
             EM  E   + P   TY  L+    K G+ + A ++F+EM +  ++PT ++YT LL  Y +
Sbjct:   222 EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280

Query:   192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV 251
                +++A     +MK    C P VYTY+ LIK    A R +     Y+DM    +TP+ V
Sbjct:   281 VGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVV 339

Query:   252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL-SVFANKGQVDMMERWYE 310
               N ++   GK G  +++  V S M     C P V + NT++ ++F +K  V  +  W++
Sbjct:   340 FLNNLMNILGKVGRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query:   311 KFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG 370
             K +   + P   T++ILI  Y K    +K   ++E M +  FP   + Y ++I A   +G
Sbjct:   399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINA---LG 455

Query:   371 DAKHMEYT---FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS 427
              AK  E     F+++        ++ +  +I  +   G   + +             +V 
Sbjct:   456 KAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVY 515

Query:   428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM 476
              YNA++S  +KA  + E   + ++M+E  CR D  + +I+   +A+ G+
Sbjct:   516 AYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGV 564

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.9e-31, P = 4.9e-31
 Identities = 101/354 (28%), Positives = 158/354 (44%)

Query:   126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTAL 185
             +A + F  LK    Y+P   TY  LL + GK+G    A  V  EM E         Y  L
Sbjct:   299 EAKEFFAELKSCG-YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNEL 357

Query:   186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS 245
             +AAY R     EA   + +M T     P+  TY+T+I A   A + +    L+  M E  
Sbjct:   358 VAAYVRAGFSKEAAGVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416

Query:   246 VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM 305
               PNT T N VL   GK    ++M ++L  M +S  C P+  T NT+L++  NKG    +
Sbjct:   417 CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDM-KSNGCSPNRATWNTMLALCGNKGMDKFV 475

Query:   306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA 365
              R + + ++ G +P+  TFN LI AYG+       S +   M +  F    +TYN ++ A
Sbjct:   476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535

Query:   366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN 425
              +  GD +  E     M ++G K    ++  ++  YA  G +  +        + QI  +
Sbjct:   536 LARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPS 595

Query:   426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK 479
                   ++ A  K   L   ER +   K+   +PD   F+ M   + +  M D+
Sbjct:   596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQ 649

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 5.6e-31, P = 5.6e-31
 Identities = 95/374 (25%), Positives = 178/374 (47%)

Query:   127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL 186
             A+ + + + E  F QP E TY  +L ++ KSGQ  LA ++  +M E  I+     Y+ ++
Sbjct:   196 AVLLIDRMVETGF-QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query:   187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV 246
                C++  +D AF   N+M+ +   + D+  Y+TLI+    A R++    L +DM +R +
Sbjct:   255 DGLCKDGSLDNAFNLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKI 313

Query:   247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME 306
             TP+ V  + ++  + K G   + E +   M++     PD  T  +++  F  + Q+D   
Sbjct:   314 TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI-SPDTVTYTSLIDGFCKENQLDKAN 372

Query:   307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS---TYNNVI 363
                +   + G  P  RTFNILI  Y K  + D     +E  RK+      +   TYN +I
Sbjct:   373 HMLDLMVSKGCGPNIRTFNILINGYCKANLID---DGLELFRKMSLRGVVADTVTYNTLI 429

Query:   364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA 423
             + F ++G  +  +  F++M +  ++ D  ++  L++G  + G   K +       K ++ 
Sbjct:   430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query:   424 ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
              ++  YN +I     A  + +   ++  +  K  +PD +T++IM     K+G        
Sbjct:   490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS----- 544

Query:   484 EQEKLQMLLEASGH 497
             E + L   +E  GH
Sbjct:   545 EADLLFRKMEEDGH 558

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 87/373 (23%), Positives = 174/373 (46%)

Query:   108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVF 167
             +N  A  F +   +  W ++L++F+ ++ Q + +P E  Y  ++ LLG+ G  +   +VF
Sbjct:   105 LNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVF 164

Query:   168 NEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACV- 226
             +EM  +G+  +   YTAL+ AY RN   + +   L++MK      P + TY+T+I AC  
Sbjct:   165 DEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKISPSILTYNTVINACAR 223

Query:   227 DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDV 286
               + +E +  L+ +M    + P+ VT N +L      G+ D+ E V   M +     PD+
Sbjct:   224 GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV-PDL 282

Query:   287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY 346
              T + ++  F    +++ +     +  + G  P+  ++N+L+ AY K     +   V   
Sbjct:   283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342

Query:   347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL 406
             M+       ++TY+ ++  F   G    +   F +M +     D  T+  LI  +   G 
Sbjct:   343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query:   407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI 466
             F +V++      +  I  ++  Y  +I AC K     +  ++ + M      P S+ ++ 
Sbjct:   403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462

Query:   467 MTEAYAKEGMNDK 479
             + EA+ +  + ++
Sbjct:   463 VIEAFGQAALYEE 475

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 84/344 (24%), Positives = 165/344 (47%)

Query:   141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
             QP   TY  ++  L K G+P+LA  + N+M +  IE    +Y+ ++ + C+   +D+A  
Sbjct:   202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261

Query:   201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
                +M      +PDV+TYS+LI    +  R+     L  DM ER + PN VT N ++  +
Sbjct:   262 LFTEMDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320

Query:   261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
              K G   + E++   M++ +   P++ T N++++ F    ++D  ++ +    +    P+
Sbjct:   321 AKEGKLIEAEKLFDEMIQRSI-DPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379

Query:   321 TRTFNILIGAYGK-KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
               T+N LI  + K K++ D M    +  R+      + TY  +I  F    D  + +  F
Sbjct:   380 VVTYNTLINGFCKAKKVVDGMELFRDMSRR-GLVGNTVTYTTLIHGFFQASDCDNAQMVF 438

Query:   380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
             +QM ++G+  +  T+  L++G    G   K +       K ++  ++  YN +     KA
Sbjct:   439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498

Query:   440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL 483
               + +   ++  +  K  +PD   ++ M   + K+G+ ++ Y L
Sbjct:   499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
 Identities = 87/311 (27%), Positives = 150/311 (48%)

Query:   126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP-ELARKVFNEMVEEGIEPTPELYTA 184
             +A+ VF  +KE    +P   TY  ++   GK G   +   K F+EM   G++P    + +
Sbjct:   286 EAISVFNSMKEYGL-RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNS 344

Query:   185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER 244
             LLA   R  L + A    ++M T    + DV++Y+TL+ A     + +L   +   M  +
Sbjct:   345 LLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVK 403

Query:   245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM 304
              + PN V+ + V+ G+ KAG FD+    L G +       D  + NT+LS++   G+ + 
Sbjct:   404 RIMPNVVSYSTVIDGFAKAGRFDEALN-LFGEMRYLGIALDRVSYNTLLSIYTKVGRSEE 462

Query:   305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE 364
                   +  + GI  +  T+N L+G YGK+  YD++  V   M++        TY+ +I+
Sbjct:   463 ALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLID 522

Query:   365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE 424
              +S  G  K     F +  + G++AD   +  LI+     GL    +S +   +K  I+ 
Sbjct:   523 GYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582

Query:   425 NVSFYNAVISA 435
             NV  YN++I A
Sbjct:   583 NVVTYNSIIDA 593

GO:0003677 "DNA binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 5.4e-29, P = 5.4e-29
 Identities = 94/369 (25%), Positives = 169/369 (45%)

Query:   141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV 200
             QP   TY  +L ++ KSGQ  LA ++  +M E  I+     Y+ ++   C++  +D AF 
Sbjct:   225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284

Query:   201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY 260
               N+M+ +     ++ TY+ LI    +A R++    L +DM +R + PN VT ++++  +
Sbjct:   285 LFNEME-MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSF 343

Query:   261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
              K G   + E +   M+      PD  T  +++  F  +  +D   +  +   + G DP 
Sbjct:   344 VKEGKLREAEELHKEMIHRGIA-PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402

Query:   321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS---TYNNVIEAFSDMGDAKHMEY 377
              RTFNILI  Y K    D     +E  RK+      +   TYN +I+ F ++G     + 
Sbjct:   403 IRTFNILINGYCKANRID---DGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459

Query:   378 TFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI 437
              F++M +  +  +  T+  L++G  + G   K +       K ++  ++  YN +I    
Sbjct:   460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC 519

Query:   438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH 497
              A  + +   ++  +  K  +P  +T++IM     K+G        E E L   +E  GH
Sbjct:   520 NASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS-----EAELLFRKMEEDGH 574

Query:   498 ----WQQNI 502
                 W  NI
Sbjct:   575 APDGWTYNI 583

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQU6	PP216_ARATH	No assigned EC number	0.6858	0.9043	0.9341	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.786.1 hypothetical protein (434 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	502
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-17
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-14
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 80/344 (23%), Positives = 155/344 (45%), Gaps = 14/344 (4%)

Query: 142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT 201
           P   T+  L+ +   S   + A +V   + E G++   +LYT L++   ++  +D  F  
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG 261
            ++M      + +V+T+  LI  C  A +       Y  M  ++V P+ V  N ++   G
Sbjct: 495 FHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553

Query: 262 KAGMFDQMERVLSGM-LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE 320
           ++G  D+   VL+ M  E+    PD  T+  ++   AN GQVD  +  Y+    + I   
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613

Query: 321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE 380
              + I + +  +K  +D   S+ + M+K         ++ +++     G A  ++  FE
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV---AGHAGDLDKAFE 670

Query: 381 ---QMHAEGMKADTKTFCCLINGYANAGLFHK---VISSVRLASKLQIAENVSFYNAVIS 434
                  +G+K  T ++  L+   +NA  + K   +   ++ + KL+    VS  NA+I+
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLR--PTVSTMNALIT 727

Query: 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND 478
           A  + + L +   V   MK     P++ T+SI+  A  ++   D
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 74.1 bits (182), Expect = 8e-14
 Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 25/306 (8%)

Query: 176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC-----VDAMR 230
            PT   +  L++    +  ID A   L  ++     + D   Y+TLI  C     VDAM 
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAM- 491

Query: 231 FELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS--GMLESATCKPDVWT 288
           FE+    + +M    V  N  T   ++ G  +AG   Q+ +     G++ S   KPD   
Sbjct: 492 FEV----FHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVV 544

Query: 289 MNTILSVFANKGQVDMMERWYEKFRNFG-----IDPETRTFNILIGAYGKKRMYDKMSSV 343
            N ++S     G VD   R ++           IDP+  T   L+ A       D+   V
Sbjct: 545 FNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601

Query: 344 MEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
            + + +     T   Y   + + S  GD       ++ M  +G+K D   F  L++   +
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661

Query: 404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET 463
           AG   K    ++ A K  I      Y++++ AC  A +  +   +Y+ +K    RP   T
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721

Query: 464 F-SIMT 468
             +++T
Sbjct: 722 MNALIT 727

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 106/512 (20%), Positives = 195/512 (38%), Gaps = 86/512 (16%)

Query: 13  SSSLLPSPLPHPHDTKTNKHRAQVPNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGE 72
            S   P  L  P        R + P F+ I CS          S E  +  + RL  E  
Sbjct: 18  DSLSNPRLLHSPRKFSLRGRRTKTP-FSSISCS----------SVEQGLKPRPRLKPEPI 66

Query: 73  YPGVSETSIPGYRSKRTPIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFE 132
              VSE       SK      L     RK+       ++       V   +  +AL++FE
Sbjct: 67  RIEVSE-------SKDA---RLDDTQIRKSGV-----SLCSQIEKLVACGRHREALELFE 111

Query: 133 MLKEQ-PFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
           +L+   PF  P   TY  L+            + V+  +   G EP   +   +L  + +
Sbjct: 112 ILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170

Query: 192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR----FELIETLYQDMDE---- 243
             ++ +A    ++M      + ++ ++ T+I   VDA      F L   +++D  +    
Sbjct: 171 CGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225

Query: 244 ------RSVTP---------------------NTVTQNIVLGGYGKAGMFDQMERVLSGM 276
                 R+                        +T     ++  Y K G  +    V  GM
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285

Query: 277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM 336
            E  T     W  N++L+ +A  G  +     Y + R+ G+  +  TF+I+I  + +  +
Sbjct: 286 PEKTTV---AW--NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340

Query: 337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC 396
            +        + +  FP        +++ +S  G  +     F++M     + +  ++  
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396

Query: 397 LINGYANAGLFHKVISSVRLASKLQIAENVS----FYNAVISACIKADDLMEMERVYKRM 452
           LI GY N G   K   +V +  ++ IAE V+     + AV+SAC  +    +   +++ M
Sbjct: 397 LIAGYGNHGRGTK---AVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452

Query: 453 KEKH-CRPDSETFSIMTEAYAKEGMNDKVYAL 483
            E H  +P +  ++ M E   +EG+ D+ YA+
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAM 484

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.4 bits (140), Expect = 5e-11
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC 225
           Y  L+  YC+   ++EA    N+MK     +P+VYTYS LI   
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK 473
           +V  YN +I    K   + E  +++  MK++  +P+  T+SI+ +   K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK 262
           PDV TY+TLI       + E    L+ +M +R + PN  T +I++ G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 62/267 (23%), Positives = 101/267 (37%), Gaps = 15/267 (5%)

Query: 223 KACVDAMRF-ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT 281
           +A  +A RF +LI             P   T N+++     +   D   RVL  +++ A 
Sbjct: 420 RAVKEAFRFAKLIRN-----------PTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAG 467

Query: 282 CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS 341
            K D     T++S  A  G+VD M   + +  N G++    TF  LI    +     K  
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527

Query: 342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--MKADTKTFCCLIN 399
                MR          +N +I A    G          +M AE   +  D  T   L+ 
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587

Query: 400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
             ANAG   +     ++  +  I      Y   +++C +  D      +Y  MK+K  +P
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647

Query: 460 DSETFSIMTEAYAKEGMNDKVYALEQE 486
           D   FS + +     G  DK + + Q+
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQD 674

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 44/216 (20%)

Query: 126 QALQVFEMLKEQPFYQPKEGT---YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY 182
           +A +V++M+ E   Y  K GT   Y   +    + G  + A  ++++M ++G++P    +
Sbjct: 597 RAKEVYQMIHE---YNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652

Query: 183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMD 242
           +AL+        +D+AF  L   +     +    +YS+L+ AC +A  ++    LY+D  
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYED-- 709

Query: 243 ERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV 302
                                             ++S   +P V TMN +++      Q+
Sbjct: 710 ----------------------------------IKSIKLRPTVSTMNALITALCEGNQL 735

Query: 303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD 338
                   + +  G+ P T T++IL+ A  +K   D
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 81/352 (23%), Positives = 133/352 (37%), Gaps = 55/352 (15%)

Query: 154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP 213
           L   GQ E A K+   M E  +    + Y AL    C      E        +       
Sbjct: 61  LCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEE-----GSRVCSRALS 114

Query: 214 DVYTYSTLIKACVDAM--RF-ELIETLY--QDMDERSVTPNTVTQNIVLGGYGKAGMFDQ 268
              +    +   + +M  RF EL+   Y    M ER    +  + N+++GGY KAG FD+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDE 170

Query: 269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
              +   ML  A  +PDV+T   +L        +      +     FG + +    N LI
Sbjct: 171 ALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229

Query: 329 GAYGK-------KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ 381
             Y K       + ++D+M       R+    W     N +I  + + G+       F  
Sbjct: 230 TMYVKCGDVVSARLVFDRMP------RRDCISW-----NAMISGYFENGECLEGLELFFT 278

Query: 382 MHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ-------IAENVSFYNAVIS 434
           M    +  D  T   +I+         +++   RL  ++         A +VS  N++I 
Sbjct: 279 MRELSVDPDLMTITSVISA-------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331

Query: 435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK---VYAL 483
             +      E E+V+ RM+ K    D+ +++ M   Y K G+ DK    YAL
Sbjct: 332 MYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYAL 379

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 248 PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN 298
           P+ VT N ++ GY K G  ++  ++ + M +    KP+V+T + ++     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK 333
           PDV T NT++  +  KG+V+   + + + +  GI P   T++ILI    K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR 191
           TY  L+    K G+ E A K+FNEM + GI+P    Y+ L+   C+
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 131 FEMLKE--QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA 188
           FE+L++  +   +    +Y  L+     +   + A +++ ++    + PT     AL+ A
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728

Query: 189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP 248
            C  + + +A   L++MK L  C P+  TYS L+ A       ++   L     E  + P
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787

Query: 249 NTV 251
           N V
Sbjct: 788 NLV 790

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN 403
           TYN +I+ +   G  +     F +M   G+K +  T+  LI+G   
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDS 461
           YN +I    KA  + E   ++K MKE+   PD 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 50/245 (20%)

Query: 150 LLVLLGKSGQPELARKVFNEM-VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL 208
           L+ +  K G    AR VF+ M   + I      + A+++ Y  N    E       M+ L
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCIS-----WNAMISGYFENGECLEGLELFFTMREL 282

Query: 209 PNCQPDVYTYSTLIKACVDAMRFELI--ETLYQDMDERSVTP---------NTVTQ-NIV 256
            +  PD+ T +++I AC      EL+  E L ++M    V           N++ Q  + 
Sbjct: 283 -SVDPDLMTITSVISAC------ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335

Query: 257 LGGYGKAGM-FDQMER--------VLSG---------------MLESATCKPDVWTMNTI 292
           LG +G+A   F +ME         ++SG               ++E     PD  T+ ++
Sbjct: 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395

Query: 293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM-RKLQ 351
           LS  A  G +D+  + +E     G+       N LI  Y K +  DK   V   +  K  
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455

Query: 352 FPWTS 356
             WTS
Sbjct: 456 ISWTS 460

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD 368
           P+  T+N LI  Y KK   ++   +   M+K        TY+ +I+    
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK 206
           G++P    Y  L+   CR   +DEA   L++M+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEP 177
           TY  LL+ L K+G P+LA  V  EM   G++P
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 63/303 (20%), Positives = 119/303 (39%), Gaps = 34/303 (11%)

Query: 150 LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP 209
           +L +  + G+   A  VF +M E  +      +  L+  Y +    DEA    ++M    
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFDEALCLYHRM-LWA 181

Query: 210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG----- 264
             +PDVYT+  +++ C           ++  +       +    N ++  Y K G     
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241

Query: 265 --MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR 322
             +FD+M R             D  + N ++S +   G+       +   R   +DP+  
Sbjct: 242 RLVFDRMPRR------------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

Query: 323 TFNILI---GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF 379
           T   +I      G +R+  +M     Y+ K  F    S  N++I+ +  +G     E  F
Sbjct: 290 TITSVISACELLGDERLGREMHG---YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346

Query: 380 EQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA 439
            +M  +    D  ++  +I+GY   GL  K + +  L  +  ++ +     +V+SAC   
Sbjct: 347 SRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402

Query: 440 DDL 442
            DL
Sbjct: 403 GDL 405

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT 178
           TY  L+  L K+G+ E A ++F EM E GIEP 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT 250
            TY+TLI     A R E    L+++M ER + P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 429 YNAVISACIKADDLMEMERVYKRMKEKHC 457
           YN++IS   KA  L E   ++K MKEK  
Sbjct: 3   YNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRP 459
           +  YNA++ A  KA D      V + MK    +P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.8
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
KOG2003	840	consensus TPR repeat-containing protein [General f	99.76
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.75
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.74
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.69
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.68
KOG2076	895	consensus RNA polymerase III transcription factor	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG1126	638	consensus DNA-binding cell division cycle control	99.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
KOG1129	478	consensus TPR repeat-containing protein [General f	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
PRK12370	553	invasion protein regulator; Provisional	99.48
PRK12370	553	invasion protein regulator; Provisional	99.48
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.47
KOG1129	478	consensus TPR repeat-containing protein [General f	99.46
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.37
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.36
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.35
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.34
PF13041	50	PPR_2: PPR repeat family	99.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.33
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.31
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.3
PF13041	50	PPR_2: PPR repeat family	99.29
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.27
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.26
PRK04841	903	transcriptional regulator MalT; Provisional	99.21
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.17
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.16
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.15
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.02
PRK04841	903	transcriptional regulator MalT; Provisional	99.0
KOG1125	579	consensus TPR repeat-containing protein [General f	98.99
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.99
KOG1125	579	consensus TPR repeat-containing protein [General f	98.98
PLN02789	320	farnesyltranstransferase	98.96
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.92
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.88
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.88
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.88
PLN02789	320	farnesyltranstransferase	98.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.87
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.84
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.81
PF12854	34	PPR_1: PPR repeat	98.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.65
PF12854	34	PPR_1: PPR repeat	98.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.65
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.63
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.61
PRK15359	144	type III secretion system chaperone protein SscB;	98.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.48
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.42
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.19
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.18
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.16
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.07
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.06
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.06
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.04
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.0
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.98
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.96
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.94
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.93
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.92
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.89
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.88
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.86
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.85
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.83
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.82
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.81
KOG0553	304	consensus TPR repeat-containing protein [General f	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.8
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.79
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.79
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.76
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.74
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.74
KOG0553	304	consensus TPR repeat-containing protein [General f	97.73
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.72
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.7
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.68
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.66
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.64
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.6
PF12688	120	TPR_5: Tetratrico peptide repeat	97.55
PF12688	120	TPR_5: Tetratrico peptide repeat	97.52
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.48
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.42
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.39
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.34
PRK10803	263	tol-pal system protein YbgF; Provisional	97.32
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.25
PF13371	73	TPR_9: Tetratricopeptide repeat	97.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.17
PRK15331	165	chaperone protein SicA; Provisional	97.14
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.13
PRK10803	263	tol-pal system protein YbgF; Provisional	97.12
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.12
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.02
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.9
PRK15331	165	chaperone protein SicA; Provisional	96.87
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.81
PF13371	73	TPR_9: Tetratricopeptide repeat	96.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.68
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.64
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.57
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.55
KOG3941	406	consensus Intermediate in Toll signal transduction	96.55
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.45
KOG4555	175	consensus TPR repeat-containing protein [Function	96.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.35
PF13428	44	TPR_14: Tetratricopeptide repeat	96.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.32
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.3
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.29
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.26
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.23
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.18
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.15
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.03
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.02
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.96
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.94
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.92
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.92
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.89
PF13512	142	TPR_18: Tetratricopeptide repeat	95.86
KOG1258	577	consensus mRNA processing protein [RNA processing	95.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.77
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.76
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.73
KOG3941	406	consensus Intermediate in Toll signal transduction	95.69
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.67
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.62
PF13512	142	TPR_18: Tetratricopeptide repeat	95.6
PRK11906	458	transcriptional regulator; Provisional	95.58
KOG1585	308	consensus Protein required for fusion of vesicles	95.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.26
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.19
KOG4555	175	consensus TPR repeat-containing protein [Function	95.19
KOG1585	308	consensus Protein required for fusion of vesicles	95.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.13
PRK11906	458	transcriptional regulator; Provisional	95.09
PF13428	44	TPR_14: Tetratricopeptide repeat	95.08
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.94
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.75
PF13929	292	mRNA_stabil: mRNA stabilisation	94.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.5
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.4
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.34
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.34
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.8
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.77
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.69
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.62
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.49
KOG1258	577	consensus mRNA processing protein [RNA processing	93.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.07
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.06
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.98
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.83
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.6
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.56
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.27
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.08
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.95
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.86
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.82
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.75
PF13431	34	TPR_17: Tetratricopeptide repeat	91.75
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.66
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.57
PF13431	34	TPR_17: Tetratricopeptide repeat	91.44
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.22
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.17
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	91.11
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.11
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.04
KOG4234	271	consensus TPR repeat-containing protein [General f	90.6
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.89
PRK09687	280	putative lyase; Provisional	89.77
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.65
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.6
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.47
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.42
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	89.22
PRK11619	644	lytic murein transglycosylase; Provisional	89.22
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.88
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.57
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	87.17
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.83
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	86.57
COG3947	361	Response regulator containing CheY-like receiver a	86.46
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.06
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.96
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.84
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.47
KOG2297	412	consensus Predicted translation factor, contains W	85.4
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.3
COG3947	361	Response regulator containing CheY-like receiver a	85.24
PF13929	292	mRNA_stabil: mRNA stabilisation	84.92
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.53
KOG2168	835	consensus Cullins [Cell cycle control, cell divisi	84.51
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.43
COG5159	421	RPN6 26S proteasome regulatory complex component [	83.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.51
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	82.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.17
KOG4648	536	consensus Uncharacterized conserved protein, conta	82.09
KOG4648	536	consensus Uncharacterized conserved protein, conta	81.52
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.39
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.12
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.03

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.1e-59  Score=472.75  Aligned_cols=374  Identities=21%  Similarity=0.322  Sum_probs=354.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      +..+.+.|..++|+.+|+.|.     .||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus       413 i~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~  487 (1060)
T PLN03218        413 FKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK  487 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence            344445555555555555443     278899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                      +++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus       488 vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~  566 (1060)
T PLN03218        488 VDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA  566 (1060)
T ss_pred             HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999986 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740          275 GMLES-ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP  353 (502)
Q Consensus       275 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  353 (502)
                      +|... .++.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus       567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~  646 (1060)
T PLN03218        567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK  646 (1060)
T ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence            99753 57899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740          354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI  433 (502)
Q Consensus       354 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  433 (502)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||
T Consensus       647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI  726 (1060)
T PLN03218        647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI  726 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       434 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..+
T Consensus       727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p  787 (1060)
T PLN03218        727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP  787 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999976544

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-58  Score=466.96  Aligned_cols=384  Identities=19%  Similarity=0.281  Sum_probs=366.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      ..++..++..|++.|++++|.++|+.|.+.| +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus       437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~  515 (1060)
T PLN03218        437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID  515 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            3667789999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCC
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDE--RSVTPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g~  265 (502)
                      +|++.|++++|+++|++|.+. |+.||..+|+.|+.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|+
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~  594 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ  594 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence            999999999999999999986 8999999999999999999999999999999986  6799999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740          266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME  345 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  345 (502)
                      +++|.++|+.|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus       595 ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        595 VDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             HHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999955 588999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740          346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN  425 (502)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  425 (502)
                      +|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|+.||
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCcHHHHH
Q 010740          426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----E-------------------GMNDKVYA  482 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~  482 (502)
                      ..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+    .                   +..++|+.
T Consensus       754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~  833 (1060)
T PLN03218        754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM  833 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence            999999999999999999999999999999999999999999876542    1                   12467999


Q ss_pred             HHHHHHHhhhhc
Q 010740          483 LEQEKLQMLLEA  494 (502)
Q Consensus       483 ~~~~~~~~~~~~  494 (502)
                      +|++|.+.+..+
T Consensus       834 lf~eM~~~Gi~P  845 (1060)
T PLN03218        834 VYRETISAGTLP  845 (1060)
T ss_pred             HHHHHHHCCCCC
Confidence            999999987553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.9e-54  Score=434.67  Aligned_cols=371  Identities=18%  Similarity=0.228  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .++..++..+.+.++++.|.+++..+.+.| +.||..+|+.++.+|++.|+++.|.++|++|.    .||..+|+.++.+
T Consensus       124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~  198 (697)
T PLN03081        124 STYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGG  198 (697)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHH
Confidence            567777788888888888888888888777 67888888888888888888888888888886    4778888888888


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      |++.|++++|+++|++|.+. |..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus       199 ~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  277 (697)
T PLN03081        199 LVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED  277 (697)
T ss_pred             HHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence            88888888888888888764 55566555544444444444444444444444444444444444444455555555555


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      |.++|+.|.     .+|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.
T Consensus       278 A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~  352 (697)
T PLN03081        278 ARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI  352 (697)
T ss_pred             HHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            555554442     234444555555555555555555555555444444444444444444444444444444444444


Q ss_pred             HcCCCC-------------------------------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          349 KLQFPW-------------------------------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL  397 (502)
Q Consensus       349 ~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  397 (502)
                      +.|+.+                               |..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus       353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l  432 (697)
T PLN03081        353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV  432 (697)
T ss_pred             HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            444444                               5555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          398 INGYANAGLFHKVISSVRLASK-LQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      +.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+
T Consensus       433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~  509 (697)
T PLN03081        433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN  509 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence            5555555555555555555543 355555555555555555555555555555443   345555566666666666666


Q ss_pred             cHHHHHHHHHHHHhhhh
Q 010740          477 NDKVYALEQEKLQMLLE  493 (502)
Q Consensus       477 ~~~A~~~~~~~~~~~~~  493 (502)
                      .+.|.++++++.+..|.
T Consensus       510 ~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        510 LELGRLAAEKLYGMGPE  526 (697)
T ss_pred             cHHHHHHHHHHhCCCCC
Confidence            66666666655555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-53  Score=429.36  Aligned_cols=367  Identities=16%  Similarity=0.220  Sum_probs=350.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      .+...+..+.+.|++++|+++|+++...+.+.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y  168 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH  168 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            34567888899999999999999999876578999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a  269 (502)
                      ++.|++++|.++|++|.+     ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+
T Consensus       169 ~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        169 VKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             hcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            999999999999999964     799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      .+++..+.+ .|+.+|..+|+.++.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|+.++|.++|++|.+
T Consensus       244 ~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~  318 (697)
T PLN03081        244 QQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD  318 (697)
T ss_pred             HHHHHHHHH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999855 5789999999999999999999999999999996    56899999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740          350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY  429 (502)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (502)
                      .|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.    .+|..+|
T Consensus       319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~  394 (697)
T PLN03081        319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW  394 (697)
T ss_pred             cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence            999999999999999999999999999999999999999999999999999999999999999999885    4788999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      |.||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|.+.|..++|.++|++|.+.
T Consensus       395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999864

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.5e-51  Score=420.92  Aligned_cols=366  Identities=13%  Similarity=0.193  Sum_probs=222.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      ++..++..+++.|++++|+++|+.|.+.| +.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|
T Consensus       255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y  333 (857)
T PLN03077        255 SWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY  333 (857)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            34556677777788888888888887776 67888888888888888888888888888888888888888888888888


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a  269 (502)
                      ++.|++++|.++|++|..     ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|
T Consensus       334 ~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a  408 (857)
T PLN03077        334 LSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG  408 (857)
T ss_pred             HhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence            888888888888777753     566677777777777777777777777777777777777666666666666666666


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------------------CCCCC
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN------------------------------FGIDP  319 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------------~~~~~  319 (502)
                      .++++.+.+ .|+.|+..+|+.|+.+|++.|++++|.++|++|.+                              .++.|
T Consensus       409 ~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~p  487 (857)
T PLN03077        409 VKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP  487 (857)
T ss_pred             HHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCC
Confidence            666666633 35555555555555555555555555555554432                              13445


Q ss_pred             CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN  399 (502)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  399 (502)
                      |..||+.++.+|++.|..+.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|+.+     .+|..+|+.+|.
T Consensus       488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~  562 (857)
T PLN03077        488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLT  562 (857)
T ss_pred             CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHH
Confidence            555555544444444444444444444444444333333333333333333333333333332     344555555555


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740          400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK-EKHCRPDSETFSIMTEAYAKEGMND  478 (502)
Q Consensus       400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~  478 (502)
                      +|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++.+|.+.|+++
T Consensus       563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~  642 (857)
T PLN03077        563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT  642 (857)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence            555555555555555555555555555555555555555555555555555555 3455555555555555555555555


Q ss_pred             HHHHHHHHH
Q 010740          479 KVYALEQEK  487 (502)
Q Consensus       479 ~A~~~~~~~  487 (502)
                      +|.+++++|
T Consensus       643 eA~~~~~~m  651 (857)
T PLN03077        643 EAYNFINKM  651 (857)
T ss_pred             HHHHHHHHC
Confidence            555555554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.5e-51  Score=419.44  Aligned_cols=363  Identities=15%  Similarity=0.166  Sum_probs=331.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .....++..+++.|+++.|.++|+.|.     .||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+
T Consensus       122 ~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~  196 (857)
T PLN03077        122 RLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT  196 (857)
T ss_pred             hHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence            344667778889999999999999885     457889999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      |+..++++.+.+++..|.+. |+.||..+|+.|+.+|++.|+++.|.++|++|..    ||..+|+.+|.+|++.|++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e  271 (857)
T PLN03077        197 CGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE  271 (857)
T ss_pred             hCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence            99999999999999999886 8899999999999999999999999999999864    588899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      |+++|++|.+ .|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus       272 Al~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~  350 (857)
T PLN03077        272 GLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME  350 (857)
T ss_pred             HHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence            9999999954 578999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740          349 KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF  428 (502)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  428 (502)
                      .    +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.++..+
T Consensus       351 ~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~  426 (857)
T PLN03077        351 T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV  426 (857)
T ss_pred             C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence            4    588899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      |+.|+.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|+.++|+++|++|...
T Consensus       427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~  484 (857)
T PLN03077        427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT  484 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            99999999999999999999999875    58889999999999999999999999999864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.6e-24  Score=228.48  Aligned_cols=358  Identities=11%  Similarity=0.016  Sum_probs=197.8

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+...|++++|+..|+.+.+.+  +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  617 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL  617 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence            33344455555555555544432  3334444555555555555555555555554432 34445555555555555555


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG  275 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  275 (502)
                      ++|+..|+++.+..  +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.
T Consensus       618 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  694 (899)
T TIGR02917       618 NKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS  694 (899)
T ss_pred             HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555555554421  3344445555555555555555555555555442 22345555555555555555555555555


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 010740          276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT  355 (502)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  355 (502)
                      +.+..  ..+...+..+...+...|++++|.+.|+++...+  |+..++..+..++.+.|++++|.+.+..+.+.... +
T Consensus       695 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~  769 (899)
T TIGR02917       695 LQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-D  769 (899)
T ss_pred             HHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence            54332  2344455555555566666666666666555432  33345555555666666666666666665554433 5


Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ...+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .+|+.+++.+.+.. +.+..++..+...
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~  846 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            5566666666666666666666666666543 3345556666666666666 55666666655542 3344555566666


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740          436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKL  488 (502)
Q Consensus       436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  488 (502)
                      +...|++++|.++|+++.+.+.. +..++..++.++.+.|+.++|.+++++|+
T Consensus       847 ~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       847 LVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            66666666666666666665433 56666666666666666666666666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.9e-24  Score=227.92  Aligned_cols=324  Identities=10%  Similarity=0.053  Sum_probs=136.5

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...|++++|.+.|+.+.+..  +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus       475 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  551 (899)
T TIGR02917       475 YLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE  551 (899)
T ss_pred             HHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence            333444444444444443321  2223334444444444444444444444444332 2233344444444444444444


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      |..+++++.+..  +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..+|...|++++|...|+.+.
T Consensus       552 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  628 (899)
T TIGR02917       552 AVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL  628 (899)
T ss_pred             HHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444443321  2333334444444444444444444444444331 2234444444444444444444444444443


Q ss_pred             HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740          278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS  357 (502)
Q Consensus       278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  357 (502)
                      +..  +.+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.+.... +..
T Consensus       629 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~  704 (899)
T TIGR02917       629 ALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AAL  704 (899)
T ss_pred             HhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChH
Confidence            321  1233344444444444444444444444444322 223344444444444444444444444444443322 333


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      .+..+...+...|++++|.+.|+.+...+  |+..++..+..++...|++++|.+.++.+.+.. +.+..++..+...|.
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~  781 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL  781 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44444444444444444444444444332  222333334444444444444444444443332 333444444444444


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 010740          438 KADDLMEMERVYKRMKE  454 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~  454 (502)
                      ..|++++|.++|+++.+
T Consensus       782 ~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       782 AQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HCcCHHHHHHHHHHHHH
Confidence            44444444444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=1.2e-20  Score=187.78  Aligned_cols=377  Identities=11%  Similarity=0.035  Sum_probs=296.0

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL  186 (502)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  186 (502)
                      +...+......+...|++++|+..|+.+.+.   .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+.
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a  201 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA  201 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            3455666667788899999999999998874   6788899999999999999999999999999875 45678899999


Q ss_pred             HHHHhCCCHHHHHHHHHHhhcCCCCC----------------------------C---CHHHHHHH--------------
Q 010740          187 AAYCRNSLIDEAFVTLNQMKTLPNCQ----------------------------P---DVYTYSTL--------------  221 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~~~~~~~~~----------------------------~---~~~~~~~l--------------  221 (502)
                      .+|...|++++|+..|..+...++..                            .   ........              
T Consensus       202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (615)
T TIGR00990       202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE  281 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence            99999999999987665443221110                            0   00000000              


Q ss_pred             -------------HHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 010740          222 -------------IKAC------VDAMRFELIETLYQDMDERS-VTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESA  280 (502)
Q Consensus       222 -------------l~~~------~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  280 (502)
                                   +...      ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++.++..
T Consensus       282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~  361 (615)
T TIGR00990       282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD  361 (615)
T ss_pred             cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                         0000      11357889999999998765 223 45678888888999999999999999998742


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740          281 TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN  360 (502)
Q Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  360 (502)
                        +.....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+...+.... +...+.
T Consensus       362 --P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~  437 (615)
T TIGR00990       362 --PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHI  437 (615)
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHH
Confidence              2346688889999999999999999999998764 566788999999999999999999999999988654 778888


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh------HHHHHHHH
Q 010740          361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV------SFYNAVIS  434 (502)
Q Consensus       361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~  434 (502)
                      .+..++.+.|++++|+..|++..+.. +-+...++.+...+...|++++|++.|+......-..+.      ..++..+.
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~  516 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA  516 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence            89999999999999999999998753 335678899999999999999999999998876421111      11222233


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .+...|++++|.+++++...... .+...+..+...+.+.|++++|+++|+++.+....
T Consensus       517 ~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       517 LFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            34457999999999999988643 24557889999999999999999999999887543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=4.8e-22  Score=188.04  Aligned_cols=305  Identities=12%  Similarity=0.084  Sum_probs=191.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhc
Q 010740          151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP--DVYTYSTLIKACVDA  228 (502)
Q Consensus       151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~  228 (502)
                      ...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+...+  ....+..+...|...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            444566777888888888887764 34556777777777788888888888877766421111  124566677777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 010740          229 MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD---VWTMNTILSVFANKGQVDMM  305 (502)
Q Consensus       229 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a  305 (502)
                      |+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+.   ...+..+...+.+.|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            77777777777777652 235667777777777777777777777777654221111   12344555666677777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740          306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  385 (502)
                      ...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777766543 33445566666666677777777777776665533322345566666666666666666666666654


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHH
Q 010740          386 GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK---ADDLMEMERVYKRMKEKHCRPDSE  462 (502)
Q Consensus       386 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~  462 (502)
                        .|+...+..++..+.+.|++++|..+++.+.+.  .|+...++.++..+..   .|+.+++..++++|.+.+++|++.
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence              344445566666666666666666666666553  3555556655555543   346666666666666655555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=1.1e-21  Score=185.52  Aligned_cols=304  Identities=12%  Similarity=0.069  Sum_probs=254.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhc
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN---TVTQNIVLGGYGK  262 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~  262 (502)
                      ...+...|++++|+..|+++.+.+  +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            445678899999999999999853  55677899999999999999999999999987643222   2567888999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCcHH
Q 010740          263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE----TRTFNILIGAYGKKRMYD  338 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~  338 (502)
                      .|++++|+.+|+++.+..  ..+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|+++
T Consensus       120 ~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             CCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            999999999999997642  45678899999999999999999999999987653322    224566777888999999


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      +|..+|+++.+.... +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++.+.
T Consensus       198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999887543 5678888999999999999999999999976433234678889999999999999999999998


Q ss_pred             hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHhhhhcc
Q 010740          419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK---EGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       419 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      +.  .|+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.++++.+++++++......
T Consensus       277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            86  466667788999999999999999999999875  5899999988887765   5689999999999998766555


Q ss_pred             ccc
Q 010740          496 GHW  498 (502)
Q Consensus       496 ~~~  498 (502)
                      ..|
T Consensus       353 p~~  355 (389)
T PRK11788        353 PRY  355 (389)
T ss_pred             CCE
Confidence            544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=2e-20  Score=185.47  Aligned_cols=334  Identities=9%  Similarity=-0.027  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      -+...+..+.+.|++++|+.+++.+....  +-+...+..++.++...|+++.|...|+++.+.. +.+...+..+...+
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l  120 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL  120 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            34456777889999999999999988874  5556678888888889999999999999999875 55678889999999


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a  269 (502)
                      ...|++++|+..|+++.+..  +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus       121 ~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA  196 (656)
T PRK15174        121 LKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED  196 (656)
T ss_pred             HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence            99999999999999998753  566788899999999999999999999988776443 33344333 347889999999


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH----HHHHHH
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK----MSSVME  345 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~  345 (502)
                      ...++.+++... .++...+..+..++...|++++|+..++++.+.. +.+...+..+...|...|++++    |...|+
T Consensus       197 ~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        197 HDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR  274 (656)
T ss_pred             HHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence            999999876532 2334455566788899999999999999999865 5667888889999999999986    899999


Q ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740          346 YMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN  425 (502)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  425 (502)
                      .+.+.... +...+..+...+...|++++|...+++..+.. +-+...+..+..++...|++++|...++.+...+ +.+
T Consensus       275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~  351 (656)
T PRK15174        275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVT  351 (656)
T ss_pred             HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence            99987655 78899999999999999999999999999864 2245677788899999999999999999988753 223


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          426 VSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ...+..+..++...|+.++|...|++..+.
T Consensus       352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344455677889999999999999999876

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-21  Score=176.99  Aligned_cols=374  Identities=14%  Similarity=0.113  Sum_probs=316.8

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 010740          107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPEL-YTAL  185 (502)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l  185 (502)
                      ..+++..+...+-.+|++++|+.+|+.+.+..  +-....|..+..++...|+.+.|.+.|.+.++.  .|+... ...+
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence            34666667777788999999999999999863  445779999999999999999999999999876  465443 3455


Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  265 (502)
                      ...+...|++.+|...|.+..+..  +-=...|+.|...+-..|+...|++.|++..+.... -...|-.|...|...+.
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~  267 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI  267 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence            566667899999999998887642  333557999999999999999999999998876332 35788899999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740          266 FDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                      ++.|...+.+.+..   .| ....+..+...|...|+.|.|+..|++.++.. +.-...|+.|..++-..|+..+|.+.+
T Consensus       268 ~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY  343 (966)
T KOG4626|consen  268 FDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY  343 (966)
T ss_pred             chHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence            99999999988654   44 45678888889999999999999999999754 444678999999999999999999999


Q ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 010740          345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIA  423 (502)
Q Consensus       345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  423 (502)
                      +........ .....+.|...+...|.+++|..+|....+.  .|.- ..++.|...|-++|++++|+..|+++++  +.
T Consensus       344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~  418 (966)
T KOG4626|consen  344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK  418 (966)
T ss_pred             HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence            999988665 6788899999999999999999999998874  5553 5789999999999999999999999988  45


Q ss_pred             CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          424 EN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       424 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      |+ ...|+.+...|-..|+.+.|++.+.+.+..  .|. ...++.|...|...|+..+|+.-+++++++.|+.++.+
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence            65 678899999999999999999999999884  454 56889999999999999999999999999998877654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=5.8e-20  Score=182.12  Aligned_cols=362  Identities=8%  Similarity=0.026  Sum_probs=288.4

Q ss_pred             hhhcHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010740          120 LKKQWFQALQVFEMLKEQPF-YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEA  198 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  198 (502)
                      +..+|+.---.|....+... -..+..-...++..+.+.|++++|..+++..+... +-+...+..++.+....|++++|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence            34555554444443332210 01123345567788889999999999999998874 44566777777888889999999


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740          199 FVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE  278 (502)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  278 (502)
                      +..|+++.+..  +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus        96 ~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         96 LQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            99999999853  6677789999999999999999999999998863 33677888999999999999999999998865


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHH
Q 010740          279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST  358 (502)
Q Consensus       279 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  358 (502)
                      ...  .+...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.... +...
T Consensus       173 ~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~  248 (656)
T PRK15174        173 EVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL  248 (656)
T ss_pred             hCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence            432  233333333 347889999999999999887643344555566678889999999999999999987654 7888


Q ss_pred             HHHHHHHHHhcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKH----MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS  434 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  434 (502)
                      +..+...+...|++++    |...|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~  326 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            8899999999999986    899999998863 2356788999999999999999999999999864 556777888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDS-ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ++.+.|++++|+..|+++...+  |+. ..+..+..++...|+.++|++.|+++++..|+
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            9999999999999999999863  444 33444677899999999999999999998766

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=1e-18  Score=177.00  Aligned_cols=368  Identities=11%  Similarity=0.002  Sum_probs=225.2

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+...|++++|+++|+.+.+..  +.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.
T Consensus        57 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~  132 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH  132 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence            33444455555555555444431  3333344444444445555555555555544432 22333 44444444445555


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHh-----ccC
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT------VTQNIVLGGYG-----KAG  264 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~l~~~~~-----~~g  264 (502)
                      ++|+..++++.+..  +.+...+..+..++...+..+.|++.++....   .|+.      .....++....     ..+
T Consensus       133 ~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~  207 (765)
T PRK10049        133 WDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKE  207 (765)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence            55555555544421  23333334444444444444444444443332   1110      00111111111     111


Q ss_pred             Ch---HHHHHHHHHHHHcCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Q 010740          265 MF---DQMERVLSGMLESATCKPDVW-TM----NTILSVFANKGQVDMMERWYEKFRNFGID-PETRTFNILIGAYGKKR  335 (502)
Q Consensus       265 ~~---~~a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g  335 (502)
                      ++   ++|++.++.+++.....|+.. .+    ...+..+...|++++|+..|+++.+.+.+ |+ .....+..+|...|
T Consensus       208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g  286 (765)
T PRK10049        208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLH  286 (765)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcC
Confidence            22   456666666654322223221 11    11134456779999999999999887532 22 22233577899999


Q ss_pred             cHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----------CCC---HHHHHHHH
Q 010740          336 MYDKMSSVMEYMRKLQFPW---TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-----------KAD---TKTFCCLI  398 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~l~  398 (502)
                      ++++|+.+|+.+.+.....   .......+..++...|++++|..+++.+.+...           .|+   ...+..+.
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a  366 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS  366 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence            9999999999987754321   134566677788999999999999999987521           123   23456677


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 010740          399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMN  477 (502)
Q Consensus       399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~  477 (502)
                      ..+...|++++|++.++.+.... +.+...+..+...+...|++++|++.+++.....  |+ ...+..++..+.+.|++
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~  443 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEW  443 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCH
Confidence            88889999999999999998864 6778889999999999999999999999999853  54 66777788889999999


Q ss_pred             HHHHHHHHHHHHhhhhccc
Q 010740          478 DKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       478 ~~A~~~~~~~~~~~~~~~~  496 (502)
                      ++|.++++++++..|++..
T Consensus       444 ~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        444 RQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH
Confidence            9999999999998877653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=4.1e-19  Score=188.25  Aligned_cols=360  Identities=12%  Similarity=0.047  Sum_probs=203.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH------------
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP-TPELY------------  182 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------  182 (502)
                      ..+...|++++|+..|+.+.+..  +.+..++..+..++.+.|++++|...|++..+..-.. ....|            
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            34567899999999999998863  5578899999999999999999999999998764211 11112            


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---
Q 010740          183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG---  259 (502)
Q Consensus       183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---  259 (502)
                      ......+.+.|++++|+..|+++.+..  +.+...+..+..++...|++++|++.|+++.+.... +...+..+...   
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~  431 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQ  431 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            223456778999999999999998853  567778888999999999999999999999876332 34444433333   


Q ss_pred             ---------------------------------------HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          260 ---------------------------------------YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       260 ---------------------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                                                             +...|++++|++.|++.++..  +-+...+..+...|.+.|
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence                                                   334566666666666665532  223445555666666666


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---------HHHHHHHHHHHhcCC
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS---------STYNNVIEAFSDMGD  371 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~  371 (502)
                      ++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.         ..+..+...+...|+
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            6666666666665432 223333333333333444444444444332111100000         000111222333333


Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010740          372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKR  451 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  451 (502)
                      .++|..+++.     .+.+...+..+...+.+.|++++|++.|+.+.+.. +.+...+..++..|...|++++|++.++.
T Consensus       589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3333333330     12223333444444445555555555555444432 33444444445555555555555555554


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          452 MKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       452 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      +.+... .+..++..+..++...|++++|.+++++++..
T Consensus       663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            443211 12333444444444455555555555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=4.3e-20  Score=167.30  Aligned_cols=355  Identities=15%  Similarity=0.148  Sum_probs=295.5

Q ss_pred             HhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 010740          105 KAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELY  182 (502)
Q Consensus       105 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~  182 (502)
                      ....+.+..+..++...|+.+.|.+.|....+.   .|+.. ....+...+-..|++++|...|.+.++.  .|. ..+|
T Consensus       147 p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiaw  221 (966)
T KOG4626|consen  147 PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAW  221 (966)
T ss_pred             chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeee
Confidence            344566777778899999999999999998875   55554 4555667777799999999999998876  444 5679


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740          183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK  262 (502)
Q Consensus       183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  262 (502)
                      ..|...+-.+|+...|++.|++..+.+  +.=...|-.|...|...+.++.|...|.+..... +.....+..+...|..
T Consensus       222 snLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye  298 (966)
T KOG4626|consen  222 SNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE  298 (966)
T ss_pred             hhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence            999999999999999999999998763  3335679999999999999999999999987763 2256778888888999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740          263 AGMFDQMERVLSGMLESATCKPD-VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  341 (502)
                      .|.++.|+..+++.++.   .|+ ...|+.|..++-..|++.+|.+.|.+.+... +......+.|...|...|.++.|.
T Consensus       299 qG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~  374 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT  374 (966)
T ss_pred             cccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence            99999999999999875   444 5789999999999999999999999998754 455678999999999999999999


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      .+|....+.... -....+.|...|-++|++++|+..|++.++  ++|+. ..|+.+...|-..|+.+.|.+.+..++..
T Consensus       375 ~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  375 RLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            999998886443 456789999999999999999999999987  57765 58999999999999999999999999885


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCc
Q 010740          421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMN  477 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~  477 (502)
                      + +-=...++.|...|-..|++.+|+.-|++...  ++|| +..|..++.++--..+|
T Consensus       452 n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw  506 (966)
T KOG4626|consen  452 N-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW  506 (966)
T ss_pred             C-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence            4 33356788999999999999999999999987  4666 44666666655443333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.89  E-value=2.8e-18  Score=181.93  Aligned_cols=368  Identities=8%  Similarity=0.005  Sum_probs=284.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTY------------MKLLVLLGKSGQPELARKVFNEMVEEGIE  176 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  176 (502)
                      ..+..+...+.+.|++++|+..|+.+.+...-.+....+            ......+.+.|++++|...|+++.+.. +
T Consensus       304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P  382 (1157)
T PRK11447        304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-N  382 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            455556677888999999999999988754212222212            223456788999999999999999874 4


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH-----------------------------------
Q 010740          177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL-----------------------------------  221 (502)
Q Consensus       177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----------------------------------  221 (502)
                      .+...+..+..++...|++++|++.|+++.+..  +.+...+..+                                   
T Consensus       383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~  460 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ  460 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            567788889999999999999999999988742  3333333222                                   


Q ss_pred             -------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740          222 -------IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS  294 (502)
Q Consensus       222 -------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  294 (502)
                             ...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|...++++++..  +.+...+..+..
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al  537 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGL  537 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence                   23445678999999999999887443 66788889999999999999999999997643  234455555556


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740          295 VFANKGQVDMMERWYEKFRNFGIDPET---------RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA  365 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  365 (502)
                      .+...++.++|+..++.+......++.         ..+..+...+...|+.++|.++++.     .+.+...+..+...
T Consensus       538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~  612 (1157)
T PRK11447        538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW  612 (1157)
T ss_pred             HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence            677899999999999876543222221         1233456778889999999999872     23466778889999


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740          366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM  445 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  445 (502)
                      +.+.|++++|++.|++..+.. +.+...+..++..+...|++++|++.++.+.+.. +.+...+..+..++...|++++|
T Consensus       613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA  690 (1157)
T PRK11447        613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAA  690 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999864 3357788999999999999999999999887653 44566777888999999999999


Q ss_pred             HHHHHHHHHCCCC--C---CHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          446 ERVYKRMKEKHCR--P---DSETFSIMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       446 ~~~~~~~~~~g~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      .++++++......  |   +...+..+...+...|++++|++.|++++.
T Consensus       691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999875322  2   234666778889999999999999999975

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=5e-18  Score=169.05  Aligned_cols=342  Identities=10%  Similarity=-0.042  Sum_probs=266.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      .+......+.+.|++++|...|++.++.  .|+...|..+..+|.+.|++++|++.+++..+..  +.+...|..+..++
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            4556778899999999999999999875  6788899999999999999999999999998853  56678899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCC-----------------------------C---CHHHHHHH-----------------
Q 010740          226 VDAMRFELIETLYQDMDERSVT-----------------------------P---NTVTQNIV-----------------  256 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~g~~-----------------------------~---~~~~~~~l-----------------  256 (502)
                      ...|++++|+..|..+...+..                             .   .......+                 
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            9999999998766544321100                             0   00000000                 


Q ss_pred             ----------HHHH------hccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010740          257 ----------LGGY------GKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP  319 (502)
Q Consensus       257 ----------~~~~------~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  319 (502)
                                +..+      ...+++++|.+.|+..++.....| ....+..+...+...|++++|+..|++..+.. +.
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence                      0000      123578899999999876543333 45668888888999999999999999998754 44


Q ss_pred             CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN  399 (502)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  399 (502)
                      ....|..+...+...|++++|...|+.+.+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence            4668888999999999999999999999887654 78899999999999999999999999998863 234667788889


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHh
Q 010740          400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS-----E-TFSIMTEAYAK  473 (502)
Q Consensus       400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-----~-~~~~l~~~~~~  473 (502)
                      ++...|++++|+..++...+.. +.+...|+.+..++...|++++|++.|++..+.....+.     . .++.....+..
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999988763 566888999999999999999999999999875322111     1 12222233445


Q ss_pred             cCCcHHHHHHHHHHHHhhhhcc
Q 010740          474 EGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .|++++|.++++++++..++..
T Consensus       521 ~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       521 KQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcH
Confidence            7999999999999998866543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=3e-16  Score=156.19  Aligned_cols=375  Identities=10%  Similarity=0.002  Sum_probs=275.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      .++..+...|+.++|+..++.....  .+........+...+...|++++|.++|+++.+.. +-+...+..++..+...
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~  149 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA  149 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence            5666677789999999999988732  13344455555778888999999999999999875 45577777888889999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      ++.++|++.++++...   .|+...+..++..+...++..+|++.++++.+... -+...+..++..+.+.|-...|+++
T Consensus       150 ~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l  225 (822)
T PRK14574        150 GRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRL  225 (822)
T ss_pred             CCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHH
Confidence            9999999999998875   46655565554455456666669999999988743 2566666666666655554444443


Q ss_pred             H------------------------------------------------HHHHHcCCCCCCH-H----HHHHHHHHHHhc
Q 010740          273 L------------------------------------------------SGMLESATCKPDV-W----TMNTILSVFANK  299 (502)
Q Consensus       273 ~------------------------------------------------~~~~~~~~~~~~~-~----~~~~l~~~~~~~  299 (502)
                      .                                                +.++...+-.|.. .    ...-.+-++...
T Consensus       226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r  305 (822)
T PRK14574        226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR  305 (822)
T ss_pred             HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence            3                                                2332222222321 1    122345567788


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-----CCChHHHHHHHHHHHhcCCHhH
Q 010740          300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF-----PWTSSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~  374 (502)
                      |++.++++.|+.+...+.+....+-..+..+|...++.++|..++..+.....     .++......|.-++...+++++
T Consensus       306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~  385 (822)
T PRK14574        306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK  385 (822)
T ss_pred             hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence            89999999999999888776677888899999999999999999998866532     2234445778888999999999


Q ss_pred             HHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 010740          375 MEYTFEQMHAEG-------------MKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD  440 (502)
Q Consensus       375 a~~~~~~m~~~~-------------~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  440 (502)
                      |..+++++.+.-             ..||-. .+..++..+...|++.+|++.++.+.... |-|..+...+...+...|
T Consensus       386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg  464 (822)
T PRK14574        386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARD  464 (822)
T ss_pred             HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            999999998731             122222 34456677888999999999999987764 778889999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          441 DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       441 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      .+.+|++.++....... -+..+....+..+...|++++|.++.+...+..|++..
T Consensus       465 ~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        465 LPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             CHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            99999999977776522 25667778888888999999999999888888777653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=8e-16  Score=156.14  Aligned_cols=379  Identities=9%  Similarity=0.016  Sum_probs=291.0

Q ss_pred             HhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010740          105 KAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA  184 (502)
Q Consensus       105 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  184 (502)
                      ......+...+......|+.++|+++|..+....  +.+...+..+...+...|++++|..+|++.++.. +.+...+..
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~   88 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG   88 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3445778888888899999999999999988642  5567789999999999999999999999998874 556788889


Q ss_pred             HHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740          185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG  264 (502)
Q Consensus       185 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g  264 (502)
                      +..++...|++++|+..++++.+..  +.+.. +..+..++...|++++|+..++++.+.... +...+..+...+...+
T Consensus        89 la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~  164 (765)
T PRK10049         89 LILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence            9999999999999999999998753  56666 888999999999999999999999987444 6667777888888999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----
Q 010740          265 MFDQMERVLSGMLESATCKPDV------WTMNTILSVFA-----NKGQV---DMMERWYEKFRNF-GIDPETR-TF----  324 (502)
Q Consensus       265 ~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----  324 (502)
                      ..+.|++.++....    .|+.      .....++....     ..+++   ++|++.++.+.+. ...|+.. .+    
T Consensus       165 ~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~  240 (765)
T PRK10049        165 LSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR  240 (765)
T ss_pred             ChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence            99999999987643    2221      11222222222     12234   7788899888854 1123221 11    


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 010740          325 NILIGAYGKKRMYDKMSSVMEYMRKLQFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKTFCCLING  400 (502)
Q Consensus       325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~  400 (502)
                      ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.....   .......+..+
T Consensus       241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a  319 (765)
T PRK10049        241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS  319 (765)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence            11133456779999999999999987643 222 22235778999999999999999988653211   13456667778


Q ss_pred             HHhcCChHHHHHHHHHHHhcCC-----------CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740          401 YANAGLFHKVISSVRLASKLQI-----------AEN---VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI  466 (502)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~  466 (502)
                      +...|++++|.++++.+....-           .|+   ...+..+...+...|+.++|+++++++.... +-+...+..
T Consensus       320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~  398 (765)
T PRK10049        320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID  398 (765)
T ss_pred             HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            8999999999999998887531           122   2345667788999999999999999998864 336788999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          467 MTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       467 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      +...+...|++++|++.++++++..|++..
T Consensus       399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~  428 (765)
T PRK10049        399 YASVLQARGWPRAAENELKKAEVLEPRNIN  428 (765)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence            999999999999999999999999887644

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=2.6e-15  Score=149.60  Aligned_cols=370  Identities=12%  Similarity=0.048  Sum_probs=269.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKE-GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      .+....+.|+++.|++.|+.+.+..   |+. .....++..+...|+.++|+..+++.... .+........+...+...
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE  115 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence            3344568999999999999998863   443 23338888899999999999999999822 123344445557789999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      |++++|+++|+++.+..  +.+...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.
T Consensus       116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            99999999999999853  566777888889999999999999999999876  44555565555555556777679999


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH------------------------------------------------
Q 010740          273 LSGMLESATCKPDVWTMNTILSVFANKGQVDM------------------------------------------------  304 (502)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------------------------------------------  304 (502)
                      ++++++..  +.+...+..++.+..+.|-...                                                
T Consensus       192 ~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~  269 (822)
T PRK14574        192 SSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK  269 (822)
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            99998763  2244444555555555443332                                                


Q ss_pred             HHHHHHHHHhC-CCCCCH-H----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740          305 MERWYEKFRNF-GIDPET-R----TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT  378 (502)
Q Consensus       305 a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  378 (502)
                      |+.-++.+... +..|.. .    ...-.+-++...|++.++++.++.+...+.+....+-..+..+|...++.++|..+
T Consensus       270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l  349 (822)
T PRK14574        270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI  349 (822)
T ss_pred             HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence            33333333321 111221 1    12234456677889999999999999888766677888899999999999999999


Q ss_pred             HHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC---hHHHHHHHHHHHHc
Q 010740          379 FEQMHAEG-----MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI-----------AEN---VSFYNAVISACIKA  439 (502)
Q Consensus       379 ~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~  439 (502)
                      |+.+....     ..++......|.-++...+++++|..+++.+.+...           .||   ...+..++..+...
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~  429 (822)
T PRK14574        350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL  429 (822)
T ss_pred             HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence            99987643     122334456788889999999999999998887311           122   22334567778889


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       440 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      |+..+|++.++++...... |......+...+...|...+|.+.++.+....|++
T Consensus       430 gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~  483 (822)
T PRK14574        430 NDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRS  483 (822)
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence            9999999999999876433 78888899999999999999999998888776554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.80  E-value=1.9e-14  Score=146.46  Aligned_cols=368  Identities=10%  Similarity=0.016  Sum_probs=266.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+..++..+.++++++.+.++..       ..|.......-..+....+...++...+..|.+.. +-+......+.-.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~  385 (987)
T PRK09782        314 YVVGATLPVLLKEGQYDAAQKLLA-------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ  385 (987)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhc-------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            445556677778888887776622       12222222111222224466777777777777652 4467777777777


Q ss_pred             HHhCCCHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTL-PNCQPDVYTYSTLIKACVDAMR---FELIETL----------------------YQDMD  242 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~  242 (502)
                      ..+.|+.++|.++|+..... +.-..+......++..|.+.+.   ...+..+                      .....
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            88899999999999988762 1123344455577777777665   3333222                      11111


Q ss_pred             hC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010740          243 ER-SV-TP--NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID  318 (502)
Q Consensus       243 ~~-g~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  318 (502)
                      .. +. ++  +...|..+..++.. ++.++|...+.+....   .|+......+...+...|++++|...|+++...  +
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~  539 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D  539 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence            11 11 33  56778888877776 7888899988887665   466554444555567899999999999987653  4


Q ss_pred             CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI  398 (502)
Q Consensus       319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~  398 (502)
                      |+...+..+..++.+.|+.++|...+....+.... +...+..+.......|++++|...+++..+.  .|+...+..+.
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA  616 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA  616 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            55555667778888999999999999999887533 3444444444555669999999999999875  56788899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740          399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND  478 (502)
Q Consensus       399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  478 (502)
                      .++.+.|++++|+..++...... +.+...++.+..++...|++++|+..|++..+... -+...+..+..++...|+++
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999875 66788888999999999999999999999998643 26778999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcc
Q 010740          479 KVYALEQEKLQMLLEAS  495 (502)
Q Consensus       479 ~A~~~~~~~~~~~~~~~  495 (502)
                      +|+..++++++..|+..
T Consensus       695 eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        695 ATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHHHHhcCCCCc
Confidence            99999999999877543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=4e-14  Score=134.72  Aligned_cols=364  Identities=10%  Similarity=0.061  Sum_probs=288.4

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV  200 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  200 (502)
                      .|++++|.+++..+.++.  +.....|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.+++|.-
T Consensus       152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            499999999999999884  7788899999999999999999999887766554 6678999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHH
Q 010740          201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN----IVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      .|.+..+..  +++...+-.-...|-+.|+...|...|.++.....+.|..-+.    .+++.+...++.+.|.+.++..
T Consensus       229 cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  229 CYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999864  6777777777888999999999999999999875443444333    3455677778889999999988


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHH
Q 010740          277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP---------------------------ETRTFNILIG  329 (502)
Q Consensus       277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~  329 (502)
                      +...+-.-+...++.++..+.+...++.+......+......+                           +..+ -.++-
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i  385 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI  385 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence            7754445566778899999999999999999888877622222                           2222 12223


Q ss_pred             HHHccCcHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQ--FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF  407 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  407 (502)
                      ++......+....+.....+..  +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            3444455555555555555555  44467789999999999999999999999999875555677899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740          408 HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK--------EKHCRPDSETFSIMTEAYAKEGMNDK  479 (502)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~g~~p~~~~~~~l~~~~~~~g~~~~  479 (502)
                      +.|.+.|+.++... +.+..+--.|...+.+.|+.++|.+.++.+.        ..+..|+..........+.+.|+.++
T Consensus       466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999999874 5566777788889999999999999999854        23456667777777888999999988


Q ss_pred             HHHHHHHHHHhh
Q 010740          480 VYALEQEKLQML  491 (502)
Q Consensus       480 A~~~~~~~~~~~  491 (502)
                      -+...-+++...
T Consensus       545 fi~t~~~Lv~~~  556 (895)
T KOG2076|consen  545 FINTASTLVDDF  556 (895)
T ss_pred             HHHHHHHHHHHH
Confidence            777766666643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.7e-14  Score=125.75  Aligned_cols=346  Identities=12%  Similarity=0.106  Sum_probs=262.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      +-+..+|..+|.++|+-...+.|.+++++........+..+||.+|.+-.-..    ..+++.+|... .+.||..|+|+
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~Pnl~TfNa  278 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMTPNLFTFNA  278 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcCCchHhHHH
Confidence            34567999999999999999999999999988877899999999987654332    26788888876 78999999999


Q ss_pred             HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHcC---CCC----CCHHH
Q 010740          221 LIKACVDAMRFEL----IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ-MERVLSGMLESA---TCK----PDVWT  288 (502)
Q Consensus       221 ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~----~~~~~  288 (502)
                      ++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...-   .++    .|...
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            9999999998765    56788999999999999999999999999887643 555555554321   122    24566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHH
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFG----IDPE---TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNN  361 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  361 (502)
                      |...+..|.+..+.+-|.++..-+....    +.|+   ..-|..+....++....+.....|+.|.-.-.-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            7788889999999999988876665321    2233   23467778888888899999999999988877789999999


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-Ch--------H-----HHHHHHH-------HHHhc
Q 010740          362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-LF--------H-----KVISSVR-------LASKL  420 (502)
Q Consensus       362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~  420 (502)
                      ++++....+.++-.-++|.+++..|..-.......++..+++.. ..        .     -|..+++       .+.+ 
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-  517 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-  517 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence            99999999999999999999998886666655555555555544 11        1     1111111       2222 


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHH---HHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-PDSETFS---IMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                       ........+.++-.+.+.|..++|.++|..+...+-+ |-....+   -+++.-.+.++...|+..++-|......
T Consensus       518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence             3445566788888899999999999999999665432 3333444   5566677888999999999998776443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.5e-15  Score=133.21  Aligned_cols=366  Identities=13%  Similarity=0.139  Sum_probs=228.1

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTY-MKLLVLLGKSGQPELARKVFNEMVEEGIEPT------PELYTALLAAY  189 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~  189 (502)
                      .+.....+.+|+..|+-+.+.. .-|+...+ ..+...+.+.+.+.+|++.|...+..  .|+      ....+.+...+
T Consensus       210 qy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  210 QYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeE
Confidence            3444455556666666555544 23333322 23445556666677777776666544  232      23345555566


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------------CHHHHHHH-
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP------------NTVTQNIV-  256 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~l-  256 (502)
                      ++.|+++.|+..|+.+.+.   .|+..+-..|+-++...|+.++..+.|..|+..-..+            +....+.- 
T Consensus       287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            6777777777777776654   4666655555556666677777777777765432111            11111100 


Q ss_pred             --------------------------------------------------------------HHHHhccCChHHHHHHHH
Q 010740          257 --------------------------------------------------------------LGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       257 --------------------------------------------------------------~~~~~~~g~~~~a~~~~~  274 (502)
                                                                                    ...|.+.|+++.|.++++
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk  443 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK  443 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence                                                                          112556777777777776


Q ss_pred             HHHHcCCCCCCHHHHHHHH------------------------------------HHHHhcCCHHHHHHHHHHHHhCCCC
Q 010740          275 GMLESATCKPDVWTMNTIL------------------------------------SVFANKGQVDMMERWYEKFRNFGID  318 (502)
Q Consensus       275 ~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~  318 (502)
                      -..++.. +.....-+.|-                                    ......|++++|.+.|++.+.....
T Consensus       444 v~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas  522 (840)
T KOG2003|consen  444 VFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS  522 (840)
T ss_pred             HHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence            5533211 11000111000                                    0111356777777777777654432


Q ss_pred             CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI  398 (502)
Q Consensus       319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~  398 (502)
                      .....|++ .-.+-..|++++|++.|-.+...-.. +......+...|....+...|++++.+.... ++.|+..+.-|.
T Consensus       523 c~ealfni-glt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~  599 (840)
T KOG2003|consen  523 CTEALFNI-GLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA  599 (840)
T ss_pred             HHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence            33333332 22455667777777777665443222 5566666777777777888888887665543 456778888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 010740          399 NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMN  477 (502)
Q Consensus       399 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~  477 (502)
                      ..|-+.|+-..|.+.+-.--+. ++.|..+...|...|....-+++++.+|++..-  ++|+..-|..++..| .+.|++
T Consensus       600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence            9999999888888876554443 577888899999999999999999999998765  689999999888755 689999


Q ss_pred             HHHHHHHHHHHHhhhhcc
Q 010740          478 DKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       478 ~~A~~~~~~~~~~~~~~~  495 (502)
                      .+|+++++..-...|++.
T Consensus       677 qka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  677 QKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             HHHHHHHHHHHHhCccch
Confidence            999999999888766654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=7.8e-14  Score=142.12  Aligned_cols=355  Identities=9%  Similarity=0.045  Sum_probs=241.0

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhCCC---HH
Q 010740          122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-G-IEPTPELYTALLAAYCRNSL---ID  196 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~  196 (502)
                      +...++.+.+..+.+..  +-+......+.-...+.|+.++|.++|+..... + -..+......++..|.+.+.   ..
T Consensus       356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            44444444444444431  334445555555555666666666666655541 1 11233334455555554443   12


Q ss_pred             HH-------------------------HHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740          197 EA-------------------------FVTLNQMKTLPNCQP--DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN  249 (502)
Q Consensus       197 ~a-------------------------~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  249 (502)
                      ++                         .+.+.....  ..++  +...|..+..++.. ++.++|...+.+....  .|+
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd  508 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD  508 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence            22                         222222222  1134  67778888877776 7888888877777765  355


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG  329 (502)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  329 (502)
                      ......+...+...|++++|...|+++...   .|+...+..+..++.+.|++++|...+++..+.+ +.....+..+..
T Consensus       509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~  584 (987)
T PRK09782        509 AWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA  584 (987)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence            544444555567889999999999887543   4455556677778888999999999999888754 333334444444


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK  409 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  409 (502)
                      .+...|++++|...+.+..+..+  +...|..+..++.+.|+.++|+..|++..+.. +-+...+..+..++...|++++
T Consensus       585 ~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        585 QRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            55566999999999998887654  57788888899999999999999999988863 2345677788888899999999


Q ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740          410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKL  488 (502)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  488 (502)
                      |+..++.+.+.. +.+...+..+..++...|++++|+..|++..+.  .|+ ..+.........+..++++|.+-+++..
T Consensus       662 Ai~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        662 SREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999888864 567788888999999999999999999999875  344 3455566677777778888888888777


Q ss_pred             Hhhhh
Q 010740          489 QMLLE  493 (502)
Q Consensus       489 ~~~~~  493 (502)
                      ...++
T Consensus       739 ~~~~~  743 (987)
T PRK09782        739 TFSFD  743 (987)
T ss_pred             hcCcc
Confidence            66544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.9e-14  Score=137.87  Aligned_cols=375  Identities=9%  Similarity=0.028  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      +.+....+.+-..|++++|...|....+..  +.+ ...+.-|.+.+.+.|+++.+...|+...+.. +.+..+...|..
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~  384 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence            445556667777888888888887776653  222 3345567788888888888888888887763 444566666666


Q ss_pred             HHHhCC----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHH
Q 010740          188 AYCRNS----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM----DERSVTPNTVTQNIVLGG  259 (502)
Q Consensus       188 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~  259 (502)
                      .|...+    ..+.|..++.+..+.  .+.|...|-.+...+-...-+.. +.+|...    ...+..+.....|.+...
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl  461 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL  461 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence            666654    467777777777763  36677777777666655444333 5555543    345555777888888888


Q ss_pred             HhccCChHHHHHHHHHHHHcCC--CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740          260 YGKAGMFDQMERVLSGMLESAT--CKP------DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY  331 (502)
Q Consensus       260 ~~~~g~~~~a~~~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  331 (502)
                      +...|+++.|...|........  ..+      +..+-..+..+.-..++++.|.+.|..+.... +-=+..|.-++...
T Consensus       462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma  540 (1018)
T KOG2002|consen  462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMA  540 (1018)
T ss_pred             HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHH
Confidence            8888888888888887754410  112      22233334555556667777777777766532 11122222222122


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH---------------------------------------
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA---------------------------------------  372 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------------------  372 (502)
                      ...+...+|...++.....+-. ++..++.+...+.....+                                       
T Consensus       541 ~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r  619 (1018)
T KOG2002|consen  541 RDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR  619 (1018)
T ss_pred             HhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence            2234445555555554443222 333333333333333333                                       


Q ss_pred             ---------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740          373 ---------KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM  443 (502)
Q Consensus       373 ---------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  443 (502)
                               +.|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.++.+.. .....+|-.+..+|..+|++.
T Consensus       620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHH
Confidence                     44555555544432 2233444444455555555555555555555442 223344455555555555555


Q ss_pred             HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          444 EMERVYKRMKEK-HCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       444 ~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .|+++|+..... +..-+......|.+++.+.|.+.+|.+.+..+....|.
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            555555544433 22234445555555555555555555555555554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.74  E-value=2.1e-13  Score=127.89  Aligned_cols=283  Identities=8%  Similarity=0.018  Sum_probs=191.2

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhCCCHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGT-YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT--ALLAAYCRNSLIDE  197 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~  197 (502)
                      .|+|++|.+......+..   ++... |.....+..+.|+++.|.+.|.++.+.  .|+.....  .....+...|++++
T Consensus        97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            688888887777665542   12233 333345557888888888888888765  45554333  33567778888888


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHhccCChHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV-------TQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~l~~~~~~~g~~~~a~  270 (502)
                      |...++++.+..  +.+......+...|.+.|++++|.+++..+.+.+..++..       +|..++.......+.+...
T Consensus       172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            888888887743  5667778888888888888888888888888776543221       2233333333444555556


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      ++++.+.+.  .+.+......+...+...|+.++|.+++++..+.  +++....  ++.+....++.+++.+..+...+.
T Consensus       250 ~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        250 RWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             HHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence            666655432  2346667777777888888888888888777762  4444222  223333457777788777777776


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      ... |...+..+...+.+.+++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|.+++++...
T Consensus       324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            554 6677777777888888888888888877764  57777777777777788888888777776644

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2.9e-13  Score=118.25  Aligned_cols=365  Identities=12%  Similarity=0.141  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .++..+|..+++--..++|.++|+...... .+.+..+||.+|.+-.-..+    .+++.+|....+.||..|+|+++.+
T Consensus       208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c  282 (625)
T KOG4422|consen  208 ETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC  282 (625)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence            667778888888899999999999887765 48889999999987654333    7899999999999999999999999


Q ss_pred             HHhCCCHHH----HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC---C-CHHHHHH
Q 010740          189 YCRNSLIDE----AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL-IETLYQDMDE----RSVT---P-NTVTQNI  255 (502)
Q Consensus       189 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~---~-~~~~~~~  255 (502)
                      ..+.|+++.    |.+++.+|++. |+.|...+|..++..+++.++..+ +..++.++..    ..++   | |...|..
T Consensus       283 ~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  283 AAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            999998765    56788889997 899999999999999999888744 4444444433    2222   2 4455677


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESAT---CKPD---VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG  329 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  329 (502)
                      .+..|.+..+.+-|.++..-+....+   +.|+   ..-|..+....|.....+....+|+.|+-.-+-|+..+...+++
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            78888899999999998876632221   1222   23466777888899999999999999998888899999999999


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CH--------hH-----HHHH-------HHHHHHcCCC
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG-DA--------KH-----MEYT-------FEQMHAEGMK  388 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~-------~~~m~~~~~~  388 (502)
                      +..-.|.++-.-+++..+...|...+...-..++..+++.. ..        ..     |..+       -.+|.+  ..
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~  519 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QD  519 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--cc
Confidence            99999999999999999999887666666666666666544 11        10     1111       122333  34


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740          389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQI----AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF  464 (502)
Q Consensus       389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~  464 (502)
                      ......+.+.-.+.+.|..++|.+++..+.+.+-    .|.......+++.-.+.++...|..+++-|...+..--...-
T Consensus       520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La  599 (625)
T KOG4422|consen  520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLA  599 (625)
T ss_pred             CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHH
Confidence            5566777888888999999999999999865532    233334446667777889999999999999776443222233


Q ss_pred             HHHHHHHHhcCCcHHHH
Q 010740          465 SIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       465 ~~l~~~~~~~g~~~~A~  481 (502)
                      +-+...|.-+..-.+|+
T Consensus       600 ~RI~e~f~iNqeq~~~l  616 (625)
T KOG4422|consen  600 QRIMEDFAINQEQKEAL  616 (625)
T ss_pred             HHHHHhcCcCHHHHHHH
Confidence            44444454443333333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=1.5e-12  Score=119.73  Aligned_cols=377  Identities=10%  Similarity=0.062  Sum_probs=293.5

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHH
Q 010740          113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM----VEEGIEPTPELYTALLAA  188 (502)
Q Consensus       113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~  188 (502)
                      .+..++.+..-|+.|..+++.+++.  ++-+...|.+-...=-.+|+.+...+++++-    ...|+..+...|-.=...
T Consensus       411 dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~  488 (913)
T KOG0495|consen  411 DLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA  488 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence            3444556666777777777777765  4666667776666666777777777776643    344777777777777777


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQ--PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      |-..|..-.+..+....... |+.  .-..||+.-...|.+.+.++-|..+|...++. ++-+...|...+..--..|..
T Consensus       489 ~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~  566 (913)
T KOG0495|consen  489 CEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTR  566 (913)
T ss_pred             HhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcH
Confidence            77777777777777666544 222  22456777777888888888888888887776 344667777777666677888


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEY  346 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  346 (502)
                      +....+|++.+..  ++.....|-.....+-..|+...|..++.+..+.. +.+...|-.-+..-....+++.|..+|.+
T Consensus       567 Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llak  643 (913)
T KOG0495|consen  567 ESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAK  643 (913)
T ss_pred             HHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            8888888888764  34455666667777788899999999999888765 55778888888888999999999999998


Q ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 010740          347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN  425 (502)
Q Consensus       347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  425 (502)
                      ....  .++...|..-+...--.+..++|.+++++.++.  -|+. ..|..+.+.+-+.++++.|.+.|..-.+. ++..
T Consensus       644 ar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~  718 (913)
T KOG0495|consen  644 ARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS  718 (913)
T ss_pred             Hhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence            8774  457777877777777789999999999998875  5554 47778888999999999999998876664 4666


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccccccC
Q 010740          426 VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQNI  502 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~i  502 (502)
                      +..|-.|...--+.|.+-.|..++++.+-++.+ +...|-..|+.-.+.|..+.|..++-++++..|.+.-.|.++|
T Consensus       719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI  794 (913)
T KOG0495|consen  719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI  794 (913)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence            778888888888999999999999999988655 8889999999999999999999999999999999999998765

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=7.5e-14  Score=131.62  Aligned_cols=292  Identities=12%  Similarity=0.072  Sum_probs=193.6

Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a  269 (502)
                      ..|+++.|.+.+.+..+.   .|+ ...+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus        96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            467777777777766553   233 3334444556666777777777777766543222222333346667777778888


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HccCcHHHHHHHHH
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN-ILIGAY---GKKRMYDKMSSVME  345 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~  345 (502)
                      ...++.+.+..  +-+...+..+...+...|++++|.+++..+.+.++. +...+. .-..++   ...+..+++.+.+.
T Consensus       173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            87777776643  335566777777777888888888888777776543 222221 111111   22222233333444


Q ss_pred             HHHHcCCC---CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          346 YMRKLQFP---WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT--F-CCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       346 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      .+.+....   .+...+..++..+...|+.++|.+++++..+..  ||...  + ..........++.+.+.+.++...+
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            44443221   377888888889999999999999999988763  44432  1 1112222345778888888888777


Q ss_pred             cCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          420 LQIAENV--SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       420 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      .. +.|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+...
T Consensus       328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            53 5555  67778999999999999999999964444457899999999999999999999999999987764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.72  E-value=1.5e-13  Score=128.91  Aligned_cols=285  Identities=8%  Similarity=0.035  Sum_probs=187.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHH
Q 010740          192 NSLIDEAFVTLNQMKTLPNCQPDVYT-YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN--IVLGGYGKAGMFDQ  268 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~  268 (502)
                      .|++++|.+.+....+.   .++... |........+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence            46666666666554432   112222 222233335666666666666666554  23332221  22455666677777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCcHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET-------RTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~  341 (502)
                      |...++.+.+..  +.+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...
T Consensus       172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            777776665532  334555666666667777777777777776665433221       12223333333334455555


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      ++++.+.+.- +.++.....+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+..
T Consensus       250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence            5655554332 347788888899999999999999999888874  4555322  2333445688999999998888763


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                       +.|...+..+...|.+.|++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|.+++++.+...
T Consensus       325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence             667778889999999999999999999999984  6899999999999999999999999999987754

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=5.1e-13  Score=125.96  Aligned_cols=288  Identities=9%  Similarity=0.012  Sum_probs=159.9

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALLAAYCRNSLID  196 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~  196 (502)
                      ..|+++.|.+.+....+.   .|+ ...+-....++...|+++.|.+.+.+..+.  .|+.  .........+...|+++
T Consensus        96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence            467888888887776654   233 233444556677778888888888777654  2443  23334467777778888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hccCChHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY---GKAGMFDQMERVL  273 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~g~~~~a~~~~  273 (502)
                      .|...++.+.+..  +.+...+..+...+...|++++|.+++..+.+.++.+.......-...+   ...+..+...+.+
T Consensus       171 ~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       171 AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888888777642  5566677777777888888888888888877776542222111111111   2222222223344


Q ss_pred             HHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          274 SGMLESAT--CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT---FNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       274 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      ..+.+...  .+.+...+..+...+...|+.++|.+++++..+..  |+...   ...........++.+.+.+.++...
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            33333210  11255666666667777777777777777666542  22221   0111111122345555555555555


Q ss_pred             HcCCCCCh--HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740          349 KLQFPWTS--STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA  417 (502)
Q Consensus       349 ~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  417 (502)
                      +.... |.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus       327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44332 33  4445555556666666666666663332223455555555666666666666666665544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=2.6e-16  Score=141.01  Aligned_cols=261  Identities=18%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740          149 KLLVLLGKSGQPELARKVFNEMVEEG-IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD  227 (502)
Q Consensus       149 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  227 (502)
                      .+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+  +.+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence            44566666667777777665433322 12334444455555556666666776666666542  2234445555555 56


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      .+++++|.+++....+..  ++...+..++..+...++++++.++++.+.+......+...|..+...+.+.|+.++|++
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            666666666666554432  344555566666666666666666666665443334555666666666666666666766


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740          308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM  387 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~  387 (502)
                      .+++..+.. +.+......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+..|++..+.. 
T Consensus       168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            666666543 3345566666666666666666666666655543 2245556666666666666666666666666542 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740          388 KADTKTFCCLINGYANAGLFHKVISSVRLA  417 (502)
Q Consensus       388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  417 (502)
                      +.|......+..++...|+.++|.++.+++
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             TT-HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            235555566666666666666666665544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.7e-12  Score=115.52  Aligned_cols=371  Identities=11%  Similarity=0.050  Sum_probs=261.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALL  186 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~  186 (502)
                      ..+......+.++|+|++|++.|.+..+.   .|+ ...|.....+|...|+|+++.+--...++.+  |+ ...+..-.
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA  190 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRA  190 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHH
Confidence            44555566788999999999999999985   677 7789999999999999999999888888763  44 34555555


Q ss_pred             HHHHhCCCHHHHHHHH----------------------H---------Hhhc-CCCCCCCHHHHHHHHHHHHh-------
Q 010740          187 AAYCRNSLIDEAFVTL----------------------N---------QMKT-LPNCQPDVYTYSTLIKACVD-------  227 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~----------------------~---------~~~~-~~~~~~~~~~~~~ll~~~~~-------  227 (502)
                      +++-..|++++|+.=.                      .         .+.+ ...+-|+.....+....+..       
T Consensus       191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~  270 (606)
T KOG0547|consen  191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD  270 (606)
T ss_pred             HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence            6666667666654211                      1         1110 11122444333333332211       


Q ss_pred             ------------------cC---CHHHHHHHHHHHHhC---CCCC---C------HHHHHHHHHHHhccCChHHHHHHHH
Q 010740          228 ------------------AM---RFELIETLYQDMDER---SVTP---N------TVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       228 ------------------~~---~~~~a~~~~~~~~~~---g~~~---~------~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                                        .+   .+..+...+.+-...   ....   |      ..+.......+.-.|+.-.|.+-|+
T Consensus       271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~  350 (606)
T KOG0547|consen  271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD  350 (606)
T ss_pred             CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence                              00   122222222221110   0011   1      1111222223445788899999999


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740          275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW  354 (502)
Q Consensus       275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  354 (502)
                      ..+.-..  .+...|.-+...|....+.++..+.|.+....+ +-+..+|..-.+.+.-.+++++|..-|++.+..... 
T Consensus       351 ~~I~l~~--~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-  426 (606)
T KOG0547|consen  351 AAIKLDP--AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-  426 (606)
T ss_pred             HHHhcCc--ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence            9876432  222337778888999999999999999998876 667788888888888899999999999999998666 


Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CC--hH
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA-----EN--VS  427 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~--~~  427 (502)
                      +...|-.+..+..+.++++++...|++.++. .+-.+..|+.....+..+++++.|.+.|+..++..-.     .+  +.
T Consensus       427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl  505 (606)
T KOG0547|consen  427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL  505 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence            7778888888888999999999999999876 4556789999999999999999999999998876311     12  22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      +-..++..- -.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...+.
T Consensus       506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  506 VHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             hhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            222333332 348999999999999986543 45578999999999999999999999988763

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.68  E-value=6.9e-13  Score=127.37  Aligned_cols=346  Identities=11%  Similarity=0.046  Sum_probs=222.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG----QPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      +.+.+...|+++.+..+|+.+.+..  +.+..+...|...|...+    ..+.|..++.+..+.- +.|...|-.+...+
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL  424 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence            4556777888888888888887763  555667777777766664    4556666666655543 44555665555555


Q ss_pred             HhCCCHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHH
Q 010740          190 CRNSLIDEAFVTLNQMK----TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVT------PNTVTQNIV  256 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~------~~~~~~~~l  256 (502)
                      ....-+.. +..|....    .. +-.+-....|.+.......|+++.|...|......   ...      ++..+-..+
T Consensus       425 e~~d~~~s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl  502 (1018)
T KOG2002|consen  425 EQTDPWAS-LDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL  502 (1018)
T ss_pred             HhcChHHH-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence            44332222 33333221    11 22345555666666666666666666666655433   111      111122233


Q ss_pred             HHHHhccCChH----------------------------------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          257 LGGYGKAGMFD----------------------------------QMERVLSGMLESATCKPDVWTMNTILSVFANKGQV  302 (502)
Q Consensus       257 ~~~~~~~g~~~----------------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (502)
                      ..++-..++.+                                  +|...++..++..  ..+...+..+...+.+...+
T Consensus       503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhh
Confidence            33333344444                                  4444444444322  23334444455556666666


Q ss_pred             HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc------------cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740          303 DMMERWYEKFRNFG-IDPETRTFNILIGAYGK------------KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM  369 (502)
Q Consensus       303 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  369 (502)
                      ..|.+-|+...+.- ..+|..+.-.|.+.|.+            .+..++|+++|..+.+..+. |...-|-+.-+++..
T Consensus       581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~k  659 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEK  659 (1018)
T ss_pred             cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhc
Confidence            66666555444321 12566666666665543            24678899999999988766 889999999999999


Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740          370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL-QIAENVSFYNAVISACIKADDLMEMERV  448 (502)
Q Consensus       370 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~  448 (502)
                      |++.+|..+|.+..+... -...+|..+.++|...|++..|+++|+...+. .-..+..+...|.+++.+.|++.+|.+.
T Consensus       660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~  738 (1018)
T KOG2002|consen  660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA  738 (1018)
T ss_pred             cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999998743 34567889999999999999999999876654 4455788899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHH
Q 010740          449 YKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       449 ~~~~~~~g~~p~~~~~~~l~  468 (502)
                      +...+...+.-....||..+
T Consensus       739 ll~a~~~~p~~~~v~FN~a~  758 (1018)
T KOG2002|consen  739 LLKARHLAPSNTSVKFNLAL  758 (1018)
T ss_pred             HHHHHHhCCccchHHhHHHH
Confidence            99888764443444555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.68  E-value=1.5e-12  Score=124.23  Aligned_cols=336  Identities=13%  Similarity=0.117  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      .......+.+...|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-.....  .+.|...|..+...
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence            344444555566699999999999999886 678899999999999999999999888776654  36778899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcC
Q 010740          225 CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKG  300 (502)
Q Consensus       225 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g  300 (502)
                      ..+.|+++.|.-.|.+.++... ++...+-.-+..|-+.|+...|.+.|.++.+..+ ..|    ......+++.+...+
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998844 3666666677889999999999999999987532 111    122334566777788


Q ss_pred             CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---------------------------
Q 010740          301 QVDMMERWYEKFRNF-GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF---------------------------  352 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------------------------  352 (502)
                      +-+.|.+.++..... +-..+...++.++..|.+...++.+......+.....                           
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            889999998887762 2345667788999999999999999988877766211                           


Q ss_pred             CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHH
Q 010740          353 PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYN  430 (502)
Q Consensus       353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  430 (502)
                      .++... -.+.-++.+....+....+.....+....|  +...|.-+..+|...|++.+|+.++..+.....--+..+|-
T Consensus       375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence            112222 123334455555555555666666665333  45688899999999999999999999999876666788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740          431 AVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKL  488 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  488 (502)
                      .+..+|...|..++|.+.|+.....  .| +...--.|...+-+.|+.++|.+.+..+.
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999999999985  34 45566677888999999999999999876

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.4e-12  Score=109.98  Aligned_cols=296  Identities=11%  Similarity=0.070  Sum_probs=167.6

Q ss_pred             CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHH
Q 010740          194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERS-VTPN--TVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      +.++|++.|-+|.+.  -+.+..+--+|.+.|.+.|..+.|+++.+.+.+.- .+.+  ......|..-|...|-+|.|+
T Consensus        50 Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          50 QPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             CcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            344444444444432  12233333344444444444444444444444331 0000  112223344455566666666


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE----TRTFNILIGAYGKKRMYDKMSSVMEY  346 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~  346 (502)
                      ++|..+.+..  .--......|+..|-...+|++|++.-+++...+-.+.    ...|.-|...+....+.+.|..++.+
T Consensus       128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            6666654422  11233455566666666666666666666655432222    12334444455556677777777777


Q ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 010740          347 MRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV  426 (502)
Q Consensus       347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  426 (502)
                      ..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-..+...|..+|...|+.++...++..+.+.  .++.
T Consensus       206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~  282 (389)
T COG2956         206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA  282 (389)
T ss_pred             HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence            7766544 444555566677777888888888888777654444566777778888888888888888777764  3444


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA---KEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      ..-..+........-.+.|..++.+-..+  +|+...+..++..-.   ..|...+.+.+++.|..........|
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y  355 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY  355 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence            44455555555555566666655554443  578888888877654   34456677777777777655444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.67  E-value=7.1e-16  Score=138.16  Aligned_cols=259  Identities=13%  Similarity=0.171  Sum_probs=80.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          222 IKACVDAMRFELIETLYQDMDERS-VTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                      ...+.+.|++++|+++++...... .+.|...|..+...+...++++.|.+.++++++..  .-+...+..++.. ...+
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence            444444555555555553332222 12233333334444444555555555555554321  1123334444443 4555


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ-FPWTSSTYNNVIEAFSDMGDAKHMEYTF  379 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~  379 (502)
                      ++++|.+++++..+.  .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++++
T Consensus        92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555444332  2333444455555555566666666655554322 2234555566666666666666666666


Q ss_pred             HHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740          380 EQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR  458 (502)
Q Consensus       380 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~  458 (502)
                      ++..+.  .| |......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|..+|++..... +
T Consensus       170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            666654  34 34555666666666666666666666655543 4455566667777777777777777777766642 2


Q ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          459 PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      .|+.....+..++...|+.++|.++.+++..
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            2566666777777777777777777666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.66  E-value=1.4e-11  Score=113.47  Aligned_cols=364  Identities=10%  Similarity=0.041  Sum_probs=188.9

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      |...+.++-|..+|..+.+-  ++-+...|......--..|..+....+|+++... ++-....|-.....+...|+...
T Consensus       526 ~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~  602 (913)
T KOG0495|consen  526 CEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA  602 (913)
T ss_pred             HHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence            33444444444444444432  2333344444444444445555555555555443 12223333444444444555555


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      |..++.+..+..  +.+...|..-+........++.|..+|.+....  .|+..+|..-+....-.+..++|.+++++.+
T Consensus       603 ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  603 ARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            555555544421  334444444445555555555555555544432  3344444444444444455555555555554


Q ss_pred             HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740          278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS  357 (502)
Q Consensus       278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  357 (502)
                      +..  +.-...|-.+.+.+-+.++.+.|.+.|..-.+ .++.....|..|...=-+.|..-.|..+++...-.++. +..
T Consensus       679 k~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~  754 (913)
T KOG0495|consen  679 KSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NAL  754 (913)
T ss_pred             HhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cch
Confidence            431  11223344444444455555555444443222 12222333444444444445555555555555544444 555


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      .|-..|++-.+.|..+.|..++.+..+. .+-+...|..-|....+.++-......++     ....|..+.-.+...|.
T Consensus       755 lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk-----kce~dphVllaia~lfw  828 (913)
T KOG0495|consen  755 LWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK-----KCEHDPHVLLAIAKLFW  828 (913)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH-----hccCCchhHHHHHHHHH
Confidence            5555555555555555555555554443 22233344444443333333222222222     13456777778888888


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740          438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                      ...++++|.+.|.+.+..+.. +-.+|.-+...+.++|.-+.-.+++++.....|.....|.
T Consensus       829 ~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~  889 (913)
T KOG0495|consen  829 SEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ  889 (913)
T ss_pred             HHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence            889999999999999886432 4568888888889999988888999888887777666664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=9.2e-12  Score=110.17  Aligned_cols=256  Identities=12%  Similarity=0.121  Sum_probs=126.2

Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCC
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV--TPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~  265 (502)
                      ++-...+.+++++-.+..... |++-+...-+....+.....++++|+.+|+++.+...  --|..+|..++-.-.....
T Consensus       236 a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            333444555555555555543 4444444444444444555566666666666555421  1134455544422221111


Q ss_pred             hH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740          266 FD-QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       266 ~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                      .. -|..++    +-.  +-.+.|+..+.+-|.-.++.++|...|++.++.+ +.....|+.+..-|....+...|.+-+
T Consensus       315 Ls~LA~~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  315 LSYLAQNVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             HHHHHHHHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence            11 111111    111  1122344445555555555555555555555544 334445555555555555555555555


Q ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740          345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE  424 (502)
Q Consensus       345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  424 (502)
                      +...+.++. |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|..+...| ..
T Consensus       388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt  464 (559)
T KOG1155|consen  388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT  464 (559)
T ss_pred             HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence            555555443 55555555555555555555555555555432 2244555555555555555555555555555544 23


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +...+..|.+.|-+.++..+|...|++.++
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            444555555555555555555555554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=2.5e-11  Score=105.72  Aligned_cols=285  Identities=9%  Similarity=-0.016  Sum_probs=150.2

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV  200 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  200 (502)
                      .|+|.+|.++.....+.++  -....|..-..+.-+.|+.+.+-.++.+..+..-.++...+-...+.....|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            5777777777766665541  12334555556666677777777777776665324555556666666677777777777


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCChHHHHHHH
Q 010740          201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT-------VTQNIVLGGYGKAGMFDQMERVL  273 (502)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~  273 (502)
                      -++++.+..  +.+.........+|.+.|++.....++..+.+.|.--+.       .+|..+++-....+..+.-...+
T Consensus       175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            766666642  555666666777777777777777777777766654333       23444444444444444444444


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740          274 SGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP  353 (502)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  353 (502)
                      +....+  .+.++..-..++.-+...|+.++|.++..+..+.+..++..    ..-.+.+-++...-.+..+...+....
T Consensus       253 ~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~  326 (400)
T COG3071         253 KNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE  326 (400)
T ss_pred             HhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence            444322  12233344444445555555555555555555444333311    111223334444444444433333222


Q ss_pred             CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          354 WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       354 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                       ++..+..|...|.+.+.|.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus       327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence             3344455555555555555555555544332  4455555555555555555555555544443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=1.6e-13  Score=126.66  Aligned_cols=285  Identities=11%  Similarity=0.102  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV--TPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      ..+|+..|.++...  ..-+......+..+|...+++++|+++|+.+.+...  .-+.++|...+..+-+.    -++..
T Consensus       335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            34555555554331  122223344455555555555555555555544311  11334444444332211    11111


Q ss_pred             HH-HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740          273 LS-GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ  351 (502)
Q Consensus       273 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  351 (502)
                      +. .++...  +-.+.+|.++..+|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+......
T Consensus       409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            11 111111  2234555555555555555555555555555432 2245555555555555555555555555555442


Q ss_pred             CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHH
Q 010740          352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNA  431 (502)
Q Consensus       352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  431 (502)
                      .. +-..|--+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.++|+++++++...+ +.|+..--.
T Consensus       486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~  562 (638)
T KOG1126|consen  486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH  562 (638)
T ss_pred             ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence            22 22333344455555555666655555555432 1133444445555555555666666665555543 222222222


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          432 VISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      -+..+...++.++|++.++++++.  .| +...|..+...|.+.|+.+.|+.-|--|..+.|.
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            344444555566666666665553  22 3344555555566666666665555555554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2e-11  Score=108.13  Aligned_cols=332  Identities=14%  Similarity=0.090  Sum_probs=247.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHH--H
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT--Y  218 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~  218 (502)
                      ..|...+-.....+.+.|....|...|......- +-.=..|..|...+   .+.+.+    .....  +.+.|...  =
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~--~l~~~~h~M~~  230 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVV--GLPSDMHWMKK  230 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHh--cCcccchHHHH
Confidence            3355555566666778888888888888777431 22333333333322   222222    22222  22222111  1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHH
Q 010740          219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCK-PDVWTMNTILSVFA  297 (502)
Q Consensus       219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~  297 (502)
                      -.+..++......+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..... -|..+|..++-.-.
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~  310 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence            23455666777888888888888888888777766777777888999999999999998764333 25677877764332


Q ss_pred             hcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHH
Q 010740          298 NKGQVD-MMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME  376 (502)
Q Consensus       298 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  376 (502)
                      ....+. -|..++. +  .  +--+.|...+.+.|+-.++.++|...|+...+.+.. ....|+.+..-|....+...|.
T Consensus       311 ~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  311 DKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             hhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence            222211 1111111 1  1  334567788889999999999999999999998776 7788999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          377 YTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       377 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      +.|+..++.. +-|...|..|.++|.-.+...-|+-+|+++.... +.|...|.+|..+|.+.++.++|++-|.+....|
T Consensus       385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999864 4578899999999999999999999999999874 7789999999999999999999999999999876


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          457 CRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      -. +...+..|...|-+.++.++|...+++.++..
T Consensus       463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33 56789999999999999999999999988853

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=4e-12  Score=107.34  Aligned_cols=287  Identities=12%  Similarity=0.044  Sum_probs=185.2

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCC
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP------ELYTALLAAYCRNS  193 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g  193 (502)
                      -.++.++|+++|-.+.+..  +.+..+--+|.+.|.+.|..+.|+.+...+.++   ||.      .+...|..-|...|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence            4577888888888877753  445556677888888888888888888888764   332      34456677777888


Q ss_pred             CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHH
Q 010740          194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN----TVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a  269 (502)
                      -+|.|.++|..+.+.+  ..-......|+..|....+|++|+++-+++.+.+..+.    ...|--+...+....+++.|
T Consensus       122 l~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         122 LLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            8888888888877643  34455677788888888888888888887777654432    12344555555566777778


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      ..++.+..+..  +..+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+
T Consensus       200 ~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         200 RELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            88877776542  2233344455667777788888888887777766555566677777777777777777777777766


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 010740          350 LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN---AGLFHKVISSVRLASK  419 (502)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~  419 (502)
                      ....++  .-..+........-.+.|...+.+-...  +|+...+..++..-..   .|...+-..+++.|..
T Consensus       278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            543322  2333333333344444454444443332  5777777777765543   2334444445555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=3.2e-12  Score=112.67  Aligned_cols=345  Identities=14%  Similarity=0.150  Sum_probs=250.0

Q ss_pred             HhhhcHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          119 VLKKQWFQALQVFEMLKEQPFYQPK------EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      .+.+.+.+|+++|+....+   .|+      ....+.+...+.+.|+++.|...|+...+.  .|+..+--.|+-++...
T Consensus       248 ~kkr~fskaikfyrmaldq---vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i  322 (840)
T KOG2003|consen  248 FKKREFSKAIKFYRMALDQ---VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI  322 (840)
T ss_pred             eehhhHHHHHHHHHHHHhh---ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence            3557889999999887765   232      224555566778889999999999988766  57777766677777778


Q ss_pred             CCHHHHHHHHHHhhcCCCCC-----------CCHHHHHHH----------------------------------------
Q 010740          193 SLIDEAFVTLNQMKTLPNCQ-----------PDVYTYSTL----------------------------------------  221 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~l----------------------------------------  221 (502)
                      |+.++..+.|.+|...++..           |+....+.-                                        
T Consensus       323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~  402 (840)
T KOG2003|consen  323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC  402 (840)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence            88888888888876553321           221111110                                        


Q ss_pred             -----------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--------------------
Q 010740          222 -----------------------IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG--------------------  258 (502)
Q Consensus       222 -----------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~--------------------  258 (502)
                                             ..-+.+.|+++.|.++++-+.+..-..-...-+.|-.                    
T Consensus       403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a  482 (840)
T KOG2003|consen  403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA  482 (840)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence                                   1135578888999888887765432211111111100                    


Q ss_pred             ----------------HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010740          259 ----------------GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR  322 (502)
Q Consensus       259 ----------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  322 (502)
                                      .....|++++|.+.+++.+...  .......-.+.-.+-..|++++|++.|-++... +..+..
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e  559 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE  559 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence                            0123578999999999886531  122233333445677899999999999888652 245677


Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                      +...+.+.|-...+...|++++.+.... ++.|+.....|...|-+.|+-..|.+++-+--+. .+-+..+..-|...|.
T Consensus       560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi  637 (840)
T KOG2003|consen  560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI  637 (840)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence            8888899999999999999998877665 4458999999999999999999998887654433 3557788888999999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISAC-IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      ...-+++++.+|+...-  +.|+..-|..++..| .+.|++.+|..+|+....+ ++-|......|++.+...|.
T Consensus       638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            99999999999998765  689999999887655 5689999999999998876 66689999999999888774

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=2.5e-13  Score=125.39  Aligned_cols=286  Identities=9%  Similarity=0.019  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740          160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC-QPDVYTYSTLIKACVDAMRFELIETLY  238 (502)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~  238 (502)
                      ..+|...|+.+.++ +.-+..+...+..+|...+++++|..+|+.+.+.... ..+..+|.+.+--+-+.    -++.++
T Consensus       335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            45555666653333 2233345555566666666666666666665543211 12344555554433221    111111


Q ss_pred             -HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740          239 -QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNFG  316 (502)
Q Consensus       239 -~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (502)
                       +.+.+. -+-...+|-++..+|.-+++.+.|++.|++.++-   .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence             122222 1224556666666666666666666666666542   33 45566666666666666666666666655321


Q ss_pred             CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740          317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC  396 (502)
Q Consensus       317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  396 (502)
                       +-+-..|.-+.-.|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|+.+|++....+.+ |+..-..
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~  562 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH  562 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence             122233344555666666666666666666666554 5556666666666666666666666666654322 3333334


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR  458 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~  458 (502)
                      .+..+...+++++|+..++++++. ++.+..+|..+...|.+.|+.+.|+.-|.-+.+.+.+
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            455555666666676666666664 3445556666666677777777776666666665443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=1.8e-11  Score=106.63  Aligned_cols=287  Identities=10%  Similarity=0.057  Sum_probs=193.8

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740          192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER  271 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~  271 (502)
                      .|+|.+|++...+-.+.+  +.....|..-..+..+.|+.+.+-.++.+..+.--.++....-...+.....|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            467777777776655532  333444555556666677777777777776665334455556666666777777777777


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCcHHHHHHHH
Q 010740          272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET-------RTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                      -++++.+..  +.+........++|.+.|++.++..++.++.+.++-.+.       .+|..+++-....+..+.-...+
T Consensus       175 ~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         175 NVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            777765532  345566677777777777777777777777776655443       34555555555555555545555


Q ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 010740          345 EYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE  424 (502)
Q Consensus       345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  424 (502)
                      +..... .+.++..-..++.-+.++|+.++|.++.++..+.+..|...    ..-.+.+-++.+.-++..+.-.+. .+.
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~  326 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPE  326 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence            554433 23366677777888888888888888888888776655521    222345666766666666655544 345


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      ++..+..|...|.+.+.|.+|...|+...+  ..|+..+|+-+..++.+.|+..+|.+..++.+..
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            567788888888899999999999887776  4688888988888999999999998888888744

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=6.2e-10  Score=99.11  Aligned_cols=358  Identities=14%  Similarity=0.074  Sum_probs=217.9

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF  199 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  199 (502)
                      ..+++.+|..+|+.+....  ..+...|...+.+=.++..+..|..++++....- +.-...|-..+..=-..|++.-|.
T Consensus        85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHH
Confidence            3567777888888777653  4455566666666666666666666666665431 111223333333333445555666


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740          200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES  279 (502)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  279 (502)
                      ++|++..+-   .|+...|++.++.-.+-+.++.|..+|+...-.  .|++.+|-...+.-.+.|....|..+|...++.
T Consensus       162 qiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  162 QIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            666555532   456666666666555555555555555555443  345555544444444444444444444333221


Q ss_pred             CC------------------------------------------------------------------------------
Q 010740          280 AT------------------------------------------------------------------------------  281 (502)
Q Consensus       280 ~~------------------------------------------------------------------------------  281 (502)
                      .|                                                                              
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            10                                                                              


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HccCcHHHHHHHHHHHHHc
Q 010740          282 -CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR-------TFNILIGAY---GKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       282 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g~~~~a~~~~~~~~~~  350 (502)
                       -+-|-.+|--.+..-...|+.+...++|++.+. +++|-..       .|.-+=-+|   ....+.+.+.+++....+.
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence             011333444445555556666777777776665 3344221       111111111   2246666777777766663


Q ss_pred             CCCCChHHHHHHHHHH----HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 010740          351 QFPWTSSTYNNVIEAF----SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV  426 (502)
Q Consensus       351 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  426 (502)
                       ++....|+..+--.|    .++.++..|.+++...+  |.-|-..+|...|..-.+.++++.+..+|+..++.+ |.|.
T Consensus       396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c  471 (677)
T KOG1915|consen  396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC  471 (677)
T ss_pred             -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence             344555555443333    35677778888877655  557888888888888888999999999999998876 6678


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEKHC-RPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      .+|......-...|+.+.|..+|+-.++... ..-...|.+.|..-...|.+++|..++++.++.
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            8888888888888999999999998887521 112446777777778899999999999988875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=3e-11  Score=105.60  Aligned_cols=201  Identities=10%  Similarity=0.049  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740          286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA  365 (502)
Q Consensus       286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  365 (502)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++...+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            3445555666666666666666666665533 334555566666666667777777666666665433 45566666666


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740          366 FSDMGDAKHMEYTFEQMHAEGMK-ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME  444 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  444 (502)
                      +...|++++|...+++..+.... .....+..+...+...|++++|...++...+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            77777777777777776653211 233456666777778888888888887777653 3455667777788888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      |..++++..+. ...+...+..++..+...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            88888887775 3345666667777788888888888887776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=7.1e-12  Score=105.91  Aligned_cols=230  Identities=11%  Similarity=0.044  Sum_probs=102.8

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740          255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK  334 (502)
Q Consensus       255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  334 (502)
                      -+.++|.+.|.+.+|++.|+..++.   .|-+.||-.|-++|.+..+++.|+.+|.+-++. .+.++....-+...+-..
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            3444444444444444444444332   334444444444444444444444444444431 122222223333344444


Q ss_pred             CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740          335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV  414 (502)
Q Consensus       335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  414 (502)
                      ++.++|.++++...+.... ++....++...|.-.++.+-|+.+|+++.+.|+. ++..|+.+.-+|...+++|-++.-|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            4444455554444443322 3444444444444444555555555555544432 3444444444444455555544444


Q ss_pred             HHHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          415 RLASKLQIAEN--VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       415 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      +.+...--.|+  ..+|-.+....+..||+..|.+-|+-....+.. +...++.|.-.-.+.|+.++|..+++.+....
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            44443321121  233444444444455555555555554443221 34445555544455555555555555544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=5.6e-11  Score=103.92  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..  +.+...+..+...
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~  108 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence            344445555555555555555555554432 2234444444455555555555555555444421  2333344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740          225 CVDAMRFELIETLYQDMDERSV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD  303 (502)
Q Consensus       225 ~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (502)
                      +...|++++|.+.+++...... ......+..+...+...|++++|.+.+++.++..  +.+...+..+...+...|+++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence            4444555555555444443211 1112233333344444444444444444443321  112233333334444444444


Q ss_pred             HHHHHHHHHH
Q 010740          304 MMERWYEKFR  313 (502)
Q Consensus       304 ~a~~~~~~~~  313 (502)
                      +|...+++..
T Consensus       187 ~A~~~~~~~~  196 (234)
T TIGR02521       187 DARAYLERYQ  196 (234)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=6.8e-11  Score=115.97  Aligned_cols=251  Identities=10%  Similarity=-0.008  Sum_probs=174.9

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740          158 GQPELARKVFNEMVEEGIEPTPELYTALLAAYCR---------NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA  228 (502)
Q Consensus       158 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  228 (502)
                      +++++|...|++..+.. +-+...|..+..++..         .+++++|...+++..+.+  +.+...+..+...+...
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence            45889999999988764 3345566666555442         244789999999988753  56778888888888899


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 010740          229 MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDV-WTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       229 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      |++++|...|++..+.+.. +...+..+...+...|++++|...+++.++..   |+. ..+..++..+...|++++|..
T Consensus       352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHH
Confidence            9999999999998887533 56778888888999999999999999987653   332 233344555667889999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-
Q 010740          308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-  386 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-  386 (502)
                      .++++.....+.+...+..+..++...|++++|...+..+...... +....+.+...|...|  +.|...++.+.+.. 
T Consensus       428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~  504 (553)
T PRK12370        428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ  504 (553)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence            9988876542334555777788888899999999999887665332 4455566666777777  47777777665431 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      ..+....+  +-..|.-.|+-+.+..+ +.+.+.+
T Consensus       505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            12222222  34445556666666555 6666543

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=1.2e-10  Score=114.22  Aligned_cols=272  Identities=4%  Similarity=-0.102  Sum_probs=165.9

Q ss_pred             CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 010740          213 PDVYTYSTLIKACVD-----AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG---------KAGMFDQMERVLSGMLE  278 (502)
Q Consensus       213 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~  278 (502)
                      .+...|...+.+...     .+++++|..+|++..+.... +...|..+..++.         ..+++++|...+++.++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            344445555554322     12356777777777765322 3445554444433         23447788888887766


Q ss_pred             cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHH
Q 010740          279 SATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSST  358 (502)
Q Consensus       279 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  358 (502)
                      ..  +.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...
T Consensus       333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            42  3356667777777778888888888888887754 555667777777788888888888888888777554 3333


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK  438 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  438 (502)
                      +..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...++.+.... +.+....+.+...|..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence            334444566677888888888877654312234456667777778888888888887765532 2334445555556666


Q ss_pred             cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          439 ADDLMEMERVYKRMKEK-HCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       439 ~g~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .|  ++|...++.+.+. +-.+...-+  +-..|.-.|+.+.+..+ +++.+.++...
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~~  540 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNIWF  540 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence            66  3666666665543 111222222  33445556666666665 77766655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.48  E-value=3.6e-10  Score=107.11  Aligned_cols=299  Identities=14%  Similarity=0.127  Sum_probs=216.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +.--...+...|++++|++.++.....  +......+......+.+.|+.++|..+|..+++++ +.|..-|..+..+..
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence            333444567789999999999886654  34445677888999999999999999999999986 344444555555552


Q ss_pred             hC-----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740          191 RN-----SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF-ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG  264 (502)
Q Consensus       191 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g  264 (502)
                      -.     ...+...++|+++...   -|.......+.-.+.....+ ..+...+..+...|+++   +|..|-..|....
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~  157 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE  157 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence            22     3577888999988764   24443433333223222233 34566677778888763   5666666777666


Q ss_pred             ChHHHHHHHHHHHHcC-------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          265 MFDQMERVLSGMLESA-------------TCKPDV--WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG  329 (502)
Q Consensus       265 ~~~~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  329 (502)
                      ..+-..+++.......             .-.|+.  +++..+...|-..|++++|++++++.++.. +..+..|..-..
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar  236 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            6666667766664321             112444  455667888999999999999999999864 444778888899


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH--------HHHHHHHH
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKT--------FCCLINGY  401 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~l~~~~  401 (502)
                      .+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|....        ......+|
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~  315 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY  315 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877 888888889999999999999999998887765443221        23456788


Q ss_pred             HhcCChHHHHHHHHHHHhc
Q 010740          402 ANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~  420 (502)
                      .+.|++..|++.|..+.+.
T Consensus       316 ~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  316 LRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHHhhHHHHHHHHHHHHHH
Confidence            9999999998887766553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=3e-10  Score=101.51  Aligned_cols=337  Identities=11%  Similarity=0.059  Sum_probs=227.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHH
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKA  224 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~  224 (502)
                      +....+-|.+.|++++|.+.|.+.++.  .|+ +..|.....+|...|+|+++++.-.+..+.   .|+ +..+..-..+
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASA  192 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHH
Confidence            344556788999999999999999987  677 888999999999999999999888777764   343 3344444455


Q ss_pred             HHhcCCHHHH----------------------HHHHHHH--------Hh-CC--CCCCHHHHHHHHHHHhc---------
Q 010740          225 CVDAMRFELI----------------------ETLYQDM--------DE-RS--VTPNTVTQNIVLGGYGK---------  262 (502)
Q Consensus       225 ~~~~~~~~~a----------------------~~~~~~~--------~~-~g--~~~~~~~~~~l~~~~~~---------  262 (502)
                      +-..|++++|                      .+++...        .+ .+  +-|...........+-.         
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~  272 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK  272 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence            5555555443                      2222221        11 11  22333333333322211         


Q ss_pred             c----------------C---ChHHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740          263 A----------------G---MFDQMERVLSGMLESATCKPD-----------VWTMNTILSVFANKGQVDMMERWYEKF  312 (502)
Q Consensus       263 ~----------------g---~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (502)
                      .                +   .+..|.+.+.+-....-..++           ..+.......+.-.|+.-.|..-|+..
T Consensus       273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA  352 (606)
T ss_pred             CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence            0                0   122222222221111000111           111122222334578888999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CH
Q 010740          313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA-DT  391 (502)
Q Consensus       313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~  391 (502)
                      +... +.+...|-.+..+|....+.++.++.|+...+.+.. ++.+|..-...+.-.+++++|..=|++.+..  .| +.
T Consensus       353 I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~  428 (606)
T KOG0547|consen  353 IKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENA  428 (606)
T ss_pred             HhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Chhhh
Confidence            8765 333334777888899999999999999999998877 8889999999999999999999999998875  34 33


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH--HH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-----PDSE--TF  464 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~--~~  464 (502)
                      ..|.-+.-+..+.+.+++++..|++.++. +|..+.+|+.....+..+++++.|.+.|+..++....     .+..  ..
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~  507 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence            45555666666889999999999998886 6778899999999999999999999999998874211     1222  22


Q ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          465 SIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      -.++..-. .++++.|++++.++++..|..
T Consensus       508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkc  536 (606)
T KOG0547|consen  508 KALLVLQW-KEDINQAENLLRKAIELDPKC  536 (606)
T ss_pred             hhHhhhch-hhhHHHHHHHHHHHHccCchH
Confidence            23332223 389999999999999987653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=2.4e-09  Score=95.50  Aligned_cols=346  Identities=13%  Similarity=0.119  Sum_probs=243.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      .+...|....+-=..++++..|..+|++.+... ..+...|-..+.+=.++..+..|..++++....  ++.-...|--.
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            355566666666677888999999999999876 577888999999999999999999999998873  33334456666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010740          222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ  301 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (502)
                      +..--..|++..|.++|+.-.+.  .|+...|+..|+.-.+-+.++.|..+++..+-   +-|++..|--....-.+.|.
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~  222 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGN  222 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCc
Confidence            66667789999999999998875  89999999999999999999999999999864   46899999888888888999


Q ss_pred             HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----------------------------
Q 010740          302 VDMMERWYEKFRNF-GI-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-----------------------------  350 (502)
Q Consensus       302 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------------------  350 (502)
                      ...+..+|+...+. |- ..+...|.++...=.++..++.|.-+|+...+.                             
T Consensus       223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~  302 (677)
T KOG1915|consen  223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA  302 (677)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence            88888888877652 10 111223333333333344455555544443332                             


Q ss_pred             --------------CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH--HHHHHH----H-H---HHhcCC
Q 010740          351 --------------QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK--TFCCLI----N-G---YANAGL  406 (502)
Q Consensus       351 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~----~-~---~~~~g~  406 (502)
                                    .-+.|-.+|--.++.-...|+.+...++|++.+.+ ++|-..  .|...|    + +   -....+
T Consensus       303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed  381 (677)
T KOG1915|consen  303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED  381 (677)
T ss_pred             HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                          11225567777777777788888888888888875 344221  111111    1 1   124677


Q ss_pred             hHHHHHHHHHHHhcCCCCChHHHHHHHH----HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740          407 FHKVISSVRLASKLQIAENVSFYNAVIS----ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      .+.+.++|+..++. +|....++.-+--    ...++.++..|.+++...+  |..|...+|...|..-.+.+++|....
T Consensus       382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRk  458 (677)
T KOG1915|consen  382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRK  458 (677)
T ss_pred             HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence            78888888777774 4444444443333    2345667777777777665  446777777777777777788888888


Q ss_pred             HHHHHHHhhhhcccccc
Q 010740          483 LEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       483 ~~~~~~~~~~~~~~~~~  499 (502)
                      ++++-+.-.|++--.|.
T Consensus       459 LYEkfle~~Pe~c~~W~  475 (677)
T KOG1915|consen  459 LYEKFLEFSPENCYAWS  475 (677)
T ss_pred             HHHHHHhcChHhhHHHH
Confidence            88887777776665553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5e-09  Score=95.60  Aligned_cols=260  Identities=11%  Similarity=0.021  Sum_probs=157.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      .+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+=.++++..  +....+|-++.--|...|...+|.+
T Consensus       257 ~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARr  333 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARR  333 (611)
T ss_pred             cChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHH
Confidence            33444444444444333 12233333333334444444444443333443321  2233445555555555556666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740          308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM  387 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~  387 (502)
                      .|.+....+ +.-...|-.+...|+-.|..++|+..+....+.-.. ...-+--+.--|.+.+..+.|.++|.+....- 
T Consensus       334 y~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-  410 (611)
T KOG1173|consen  334 YFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-  410 (611)
T ss_pred             HHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence            665554322 122334555555566666666666555554443111 11112223334556677777777777766542 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010740          388 KADTKTFCCLINGYANAGLFHKVISSVRLASKL------QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS  461 (502)
Q Consensus       388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~  461 (502)
                      +-|+..++-+.-.....+.+.+|..+|+..+..      ...-...+++.|..+|.+.+.+++|+..+++...... -+.
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~  489 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDA  489 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cch
Confidence            335667777777777788899999999876632      1112456688999999999999999999999998743 388


Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .++.++.-.|...|+++.|++.|.+++...|.+
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999887665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.3e-11  Score=104.38  Aligned_cols=230  Identities=11%  Similarity=0.028  Sum_probs=173.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHH
Q 010740          218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWT-MNTILSVF  296 (502)
Q Consensus       218 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~  296 (502)
                      -+.+.++|.+.|.+.+|++.++.-.+.  .|-..||..|-+.|.+..+.+.|+.++.+.++.   .|-.+| ..-+.+.+
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHH
Confidence            356777777888888888877776665  445667777777888888888888888777664   343333 44566777


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHH
Q 010740          297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHME  376 (502)
Q Consensus       297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  376 (502)
                      ...++.++|.++|+...+.. +.++.....+...|.-.++.+-|+.++.++.+.|.. +...|+.+.-+|.-.++++-++
T Consensus       301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            77788888888888877654 556666666666777778888888888888888887 7888888888888888888888


Q ss_pred             HHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          377 YTFEQMHAEGMKADT--KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       377 ~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      ..|++....--.|+.  ..|..+.......|++..|.+.|+..+..+ ..+...+|.|...-.+.|++++|..+++....
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            888887765444543  467778888888888888888888887765 45667788888888888999999888888776


Q ss_pred             C
Q 010740          455 K  455 (502)
Q Consensus       455 ~  455 (502)
                      .
T Consensus       458 ~  458 (478)
T KOG1129|consen  458 V  458 (478)
T ss_pred             h
Confidence            4

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=5.1e-09  Score=91.82  Aligned_cols=296  Identities=8%  Similarity=-0.012  Sum_probs=216.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740          192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMER  271 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~  271 (502)
                      .++...|...+-.+.....++-|+.....+.+++...|+.++|+..|+...-.+.. +........-.+.+.|+++....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence            34444455444444333356778888899999999999999999999987765321 23333444445677888888888


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740          272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ  351 (502)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  351 (502)
                      +...+....  +-+...|-.-+......++++.|+.+-++.++.+ +.+...|-.=...+...|+.++|.-.|...+...
T Consensus       288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            888776432  2344445555556667888999999998888754 4455566555667788899999999999888765


Q ss_pred             CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCCCChHHH
Q 010740          352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI-NGYAN-AGLFHKVISSVRLASKLQIAENVSFY  429 (502)
Q Consensus       352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (502)
                      +. +...|.-|+.+|...|++.+|..+-+..... +..+..++..+. ..|.. ...-++|.++++...... |.-....
T Consensus       365 p~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV  441 (564)
T KOG1174|consen  365 PY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAV  441 (564)
T ss_pred             hh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHH
Confidence            43 7889999999999999999988776665543 233555555553 33332 223478888888877643 2335667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      +.+...|...|..++++.++++...  ..||....+.|...+...+.+.+|++.|..++...|.+..
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            7888899999999999999998886  4689999999999999999999999999999998776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.44  E-value=1.5e-09  Score=102.99  Aligned_cols=291  Identities=13%  Similarity=0.122  Sum_probs=145.4

Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA-----  263 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----  263 (502)
                      +...|++++|++.++.-..  .+.............+.+.|+.++|..+|..+++.+.. |..-|..+..+.+-.     
T Consensus        14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence            3455555555555554433  12222333344445555555555555555555555322 333333333333111     


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV-DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSS  342 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  342 (502)
                      ...+...++++++.+.   -|.......+.-.+..-..+ ..+..++..+...|+|+   +|+.|-..|....+.+-..+
T Consensus        91 ~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   91 EDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             ccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence            1344445555555332   12222222221111111112 12334444455555433   34444444444444343444


Q ss_pred             HHHHHHHc----C----------CCCChH--HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 010740          343 VMEYMRKL----Q----------FPWTSS--TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAG  405 (502)
Q Consensus       343 ~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g  405 (502)
                      ++......    +          -+|...  ++..+...|-..|++++|++++++.++.  .|+ +..|..-.+.+-+.|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence            44433221    0          112332  3344556666677777777777777665  444 456666667777777


Q ss_pred             ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHhcCCc
Q 010740          406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS--E----TF--SIMTEAYAKEGMN  477 (502)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~----~~--~~l~~~~~~~g~~  477 (502)
                      ++++|.+.++.+...+ .-|..+-+-.+..+.++|++++|.+++......+..|-.  .    .|  .-...+|.+.|++
T Consensus       243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            7777777777776664 345555556666667777777777777766655432221  1    22  2335567777777


Q ss_pred             HHHHHHHHHHHHhh
Q 010740          478 DKVYALEQEKLQML  491 (502)
Q Consensus       478 ~~A~~~~~~~~~~~  491 (502)
                      ..|++.|....+..
T Consensus       322 ~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  322 GLALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776666543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=1.5e-10  Score=108.25  Aligned_cols=241  Identities=16%  Similarity=0.174  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--
Q 010740          250 TVTQNIVLGGYGKAGMFDQMERVLSGMLES----ATC-KPDVWT-MNTILSVFANKGQVDMMERWYEKFRNF-----G--  316 (502)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--  316 (502)
                      ..++..+...|...|+++.|+.+++..++.    .|. -|...+ .+.+...|...+++++|..+|+++...     |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            455666777888888888888887776543    121 123322 334667788888888888888887642     2  


Q ss_pred             CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCC-CC-hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---C
Q 010740          317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-----QFP-WT-SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE---G  386 (502)
Q Consensus       317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~  386 (502)
                      .+--..+++.|..+|.+.|++++|...++...+.     +.. +. ...++.++..+...+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            1122446777777888889888888777765432     111 12 234666777888889999999888876532   1


Q ss_pred             CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          387 MKAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQ-------IAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       387 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ..++    ..+++.|...|...|++++|.++++.+....       ..-....++.|...|.+.+.+.+|.++|.+....
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    3578999999999999999999998776541       1222456778889999999999999999876543


Q ss_pred             ----CC-CCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          456 ----HC-RPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       456 ----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                          |. .|+ ..+|..|...|.+.|++++|+++.+.....
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence                32 233 457889999999999999999999988754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=1.5e-11  Score=117.13  Aligned_cols=274  Identities=15%  Similarity=0.142  Sum_probs=166.4

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC
Q 010740          131 FEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPN  210 (502)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  210 (502)
                      +-.+...| +.|+..+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.           
T Consensus        13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            33444455 6777777777777777777777777 7777766666667777777777766666655443           


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 010740          211 CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMN  290 (502)
Q Consensus       211 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  290 (502)
                       .|...+|..|..+|...||......+=+            -...+...+...|.-.....++..+.-..+..||...  
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--  144 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--  144 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence             3666677777777777777655222211            1222333455555555555555544333333444332  


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740          291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG  370 (502)
Q Consensus       291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  370 (502)
                       .+......|-++.+++++..+-.... ..  .+..+++-+...  ..-..++.+......-.+++.+|..++.+-...|
T Consensus       145 -~illlv~eglwaqllkll~~~Pvsa~-~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag  218 (1088)
T KOG4318|consen  145 -AILLLVLEGLWAQLLKLLAKVPVSAW-NA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG  218 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhCCcccc-cc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence             33334455666666666654432110 01  111123333322  2223333333333222468888888888888888


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD  441 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  441 (502)
                      +.+.|..++.+|++.|...+..-|..|+-+   .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus       219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            888888888888888888777777777655   67777788888888888888888888877777776554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.37  E-value=5.5e-08  Score=90.43  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE  474 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  474 (502)
                      .++..+-..|+++.|..+++.+.++  .|+ +..|-.-.+.+...|++++|..++++.++.+. ||...-..-+....+.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrA  452 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRA  452 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHc
Confidence            3444555556666666655555543  222 22333333455555666666666665555432 2333333344444555


Q ss_pred             CCcHHHHHHHHHHHHh
Q 010740          475 GMNDKVYALEQEKLQM  490 (502)
Q Consensus       475 g~~~~A~~~~~~~~~~  490 (502)
                      ++.++|.++.-+-.+.
T Consensus       453 n~i~eA~~~~skFTr~  468 (700)
T KOG1156|consen  453 NEIEEAEEVLSKFTRE  468 (700)
T ss_pred             cccHHHHHHHHHhhhc
Confidence            5555555555444443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.36  E-value=1.5e-10  Score=110.42  Aligned_cols=76  Identities=21%  Similarity=0.260  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      -++..++..|+..|+.+.|- +|..|.-.. .+-+...++.++......++.+.+.           .|...+|..|..+
T Consensus        26 vtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a   92 (1088)
T KOG4318|consen   26 VTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA   92 (1088)
T ss_pred             hhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence            45888999999999999998 999887775 5777889999999999999988766           6889999999999


Q ss_pred             HHhCCCHHH
Q 010740          189 YCRNSLIDE  197 (502)
Q Consensus       189 ~~~~g~~~~  197 (502)
                      |...|++..
T Consensus        93 yr~hGDli~  101 (1088)
T KOG4318|consen   93 YRIHGDLIL  101 (1088)
T ss_pred             HHhccchHH
Confidence            999999655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.36  E-value=1.9e-09  Score=101.01  Aligned_cols=198  Identities=15%  Similarity=0.177  Sum_probs=111.6

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-H
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESA----T-CKP-DVWTMNTILSVFANKGQVDMMERWYEKFRNF-----GI-DPET-R  322 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~  322 (502)
                      +...|...+++++|..+|+.++...    | ..| -..+++.|..+|.+.|++++|...+++..+.     +. .+.+ .
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            4444555555555555555443210    1 011 1233444444555555555544444443320     10 1111 2


Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----C--CC
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQ---FPW----TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG----M--KA  389 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~--~p  389 (502)
                      .++.+...|...+++++|..++....+.-   +.+    -..+++.|...|...|++++|.++|+.++...    -  .+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~  406 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY  406 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence            34445555666666666666665443321   111    23567777788888888888888877765431    1  11


Q ss_pred             -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          390 -DTKTFCCLINGYANAGLFHKVISSVRLASKL----Q--IAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       390 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                       ....++.+...|.+.+++++|.++|.+....    |  .+....+|..|...|...|++++|+++.+...
T Consensus       407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             2346677778888888888887777654332    2  23346778889999999999999998887765

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.36  E-value=5.7e-08  Score=90.30  Aligned_cols=128  Identities=12%  Similarity=0.146  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      +-.++..+-..|+++.|...++....+  .|+.. .|..-.+.+...|++++|..++++..+.+ .+|..+-.--+.-..
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL  450 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML  450 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            344677788899999999999998875  67654 56666788999999999999999999876 566665556677778


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHH--HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          438 KADDLMEMERVYKRMKEKHCRPDSE--------TFSIM--TEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ++++.++|.++.......|.  +..        .|-.+  ..+|.+.|++..|++=|....+..
T Consensus       451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~  512 (700)
T KOG1156|consen  451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY  512 (700)
T ss_pred             HccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            89999999999998887764  222        23333  457888888888888777766653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=2.6e-09  Score=86.49  Aligned_cols=200  Identities=13%  Similarity=0.063  Sum_probs=170.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .+...+.-.+...|++..|.+-++...++.  +.+..+|..+...|-+.|+.+.|.+.|++..+.. +-+..+.|.....
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F  112 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence            445556667889999999999999999974  5566699999999999999999999999999875 5678899999999


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      +|..|++++|...|++....+....-..+|..+.-|..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            99999999999999999887666666778999999999999999999999999887443 55677788888999999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                      |...++......  .++..+.-..|+.-...|+-+.+.++=.++..
T Consensus       192 Ar~~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         192 ARLYLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999986554  37888888888888899999888887776665

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.6e-09  Score=97.40  Aligned_cols=270  Identities=13%  Similarity=0.041  Sum_probs=114.2

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...+++.+..++++.+.+..  ++....+..-|..+...|+..+-..+=.+|.+.- |..+.+|-++.--|.-.|+..+
T Consensus       254 ~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~se  330 (611)
T KOG1173|consen  254 LYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSE  330 (611)
T ss_pred             HHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHH
Confidence            334445555555555444442  3333333333444444444444444444444331 3334444444444444455555


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      |.+.|.+....+  +.=...|-.+...|+-.+.-++|...+....+. ++-...-+--+.--|.+.+..+.|.+.|.+..
T Consensus       331 ARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~  407 (611)
T KOG1173|consen  331 ARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL  407 (611)
T ss_pred             HHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            555554444321  112233444444555555555554444443332 00011111112223444445555555554443


Q ss_pred             HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 010740          278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ  351 (502)
Q Consensus       278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  351 (502)
                      ..  .+.|+...+-+.-.....+.+.+|..+|+..+..      ....-..+++.|..+|.+.+.+++|+..++......
T Consensus       408 ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  408 AI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             hc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            22  1223344444444444444555555555444310      000112234444445555555555555555444443


Q ss_pred             CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          352 FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI  398 (502)
Q Consensus       352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~  398 (502)
                      .. +..++.++.-.|...|+++.|.+.|.+...  +.|+..+...++
T Consensus       486 ~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL  529 (611)
T KOG1173|consen  486 PK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL  529 (611)
T ss_pred             CC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence            33 444455554445555555555555544443  244443333333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=4e-08  Score=84.62  Aligned_cols=163  Identities=14%  Similarity=0.090  Sum_probs=91.1

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID  196 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  196 (502)
                      ++...|++++|+..|..+.+..  .++...+..|..++.-.|.+.+|..+-.+..     .++-.-..|.....+.|+-+
T Consensus        66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHH
Confidence            3445677777777776666543  5555666666666666666666666655432     22333333444444555555


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI-VLGGYGKAGMFDQMERVLSG  275 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~  275 (502)
                      +-..+.+.+...      ..--.+|.......-.+.+|+++|......+  |+-...|. +.-+|.+..-++.+.++++-
T Consensus       139 ~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v  210 (557)
T KOG3785|consen  139 RILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV  210 (557)
T ss_pred             HHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence            555544444321      1222234444444556788888888877652  33333443 34467778888888888888


Q ss_pred             HHHcCCCCCCHHHHHHHHHHH
Q 010740          276 MLESATCKPDVWTMNTILSVF  296 (502)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~  296 (502)
                      .++..  ..+....|......
T Consensus       211 YL~q~--pdStiA~NLkacn~  229 (557)
T KOG3785|consen  211 YLRQF--PDSTIAKNLKACNL  229 (557)
T ss_pred             HHHhC--CCcHHHHHHHHHHH
Confidence            77652  33344445444333

>PF13041 PPR_2: PPR repeat family

Probab=99.34  E-value=4.4e-12  Score=79.61  Aligned_cols=50  Identities=34%  Similarity=0.559  Sum_probs=43.4

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          424 ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       424 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      ||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888888888888888888888888888888888888888888888864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.33  E-value=1e-07  Score=90.50  Aligned_cols=348  Identities=12%  Similarity=0.071  Sum_probs=199.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740          140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS  219 (502)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (502)
                      +.-+...|..|.-++..+|+++.+.+.|++....- .-....|..+...|...|.-..|+.+++.......-++|...+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            34466677777777777777777777777765432 23456666677777777777777777766544211123333333


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhcc-----------CChHHHHHHHHHHHHcCCCC
Q 010740          220 TLIKACVD-AMRFELIETLYQDMDER--SV--TPNTVTQNIVLGGYGKA-----------GMFDQMERVLSGMLESATCK  283 (502)
Q Consensus       220 ~ll~~~~~-~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~  283 (502)
                      ..-..|.+ .+..++++.+-.+....  +.  ......|..+.-+|...           ....++++.+++.++..+..
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33333332 34455555444444431  10  01122222222222211           12334455555555444434


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CC----------
Q 010740          284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL-QF----------  352 (502)
Q Consensus       284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----------  352 (502)
                      |++..|-++  -|...++.+.|++..++..+.+-..+...|..|.-.+...+++.+|+.+.+..... +.          
T Consensus       478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH  555 (799)
T ss_pred             chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence            433333222  23444555555555555555433444455555544444444444444444332211 00          


Q ss_pred             --------------------------------------------------------------------------------
Q 010740          353 --------------------------------------------------------------------------------  352 (502)
Q Consensus       353 --------------------------------------------------------------------------------  352 (502)
                                                                                                      
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence                                                                                            


Q ss_pred             -----CCC------hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          353 -----PWT------SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       353 -----~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                           .|+      ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|......+
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence                 000      1123344445555566666666666555432 2233455666667778888899999888887764


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          422 IAENVSFYNAVISACIKADDLMEMER--VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                       |.++.+..++..++.+.|+..-|..  ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|+-+.++...
T Consensus       715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence             5567788899999999998888887  88999887644 7889999999999999999999999999887543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.31  E-value=3.7e-09  Score=85.62  Aligned_cols=202  Identities=13%  Similarity=0.054  Sum_probs=150.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      ...+.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+-|+...+.... +..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            4456667778888888888888877754 555667777777888888888888888887777665 67777778888888


Q ss_pred             cCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740          369 MGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER  447 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  447 (502)
                      .|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.++..++.. +......-.+.....+.|++..|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888877643222 23577778777788888888888888887764 4445556677777888888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +++.....+. ++..+.-..|+.-.+.|+-+.+-++-.+.....|..
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            8888877765 778887778888888888888877776666665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.31  E-value=2.7e-09  Score=95.84  Aligned_cols=219  Identities=10%  Similarity=-0.046  Sum_probs=133.0

Q ss_pred             cCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010740          228 AMRFELIETLYQDMDERS-VTPN--TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM  304 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (502)
                      .+..+.++.-+.+++... ..|+  ...|..+...|...|++++|...|++.++..  +.+...|+.+...+...|++++
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHH
Confidence            455566777777776532 1222  3456666777778888888888888776642  3356777778888888888888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      |...|++..+.. +-+..++..+..++...|++++|.+.|+...+.... +.. .......+...++.++|...|.+...
T Consensus       117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            888888877643 444566777777777788888888888877776443 221 11112223345677888887766543


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL---QI---AENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      .. .|+...+   .......|+...+ +.++.+.+.   ..   +.....|..+...+.+.|++++|+..|++..+.+
T Consensus       194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            22 2222211   2222334554443 233333321   10   1123467777777888888888888888877754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=5.8e-08  Score=89.31  Aligned_cols=373  Identities=12%  Similarity=0.057  Sum_probs=212.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +..-+..+...|++++|++....+...+  +-+...+..-+-++.+.+++++|+.+.+.-...  ..+..-+--=..+..
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence            3344566678899999999999998874  566778888888999999999999666543211  111111112234455


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----------------------
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP----------------------  248 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----------------------  248 (502)
                      +.+..++|+..++-..     +.+..+...-...+.+.+++++|..+|+.+.+++...                      
T Consensus        91 rlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            7899999999988332     2445566667788899999999999999996654320                      


Q ss_pred             -----CHHHHHHH---HHHHhccCChHHHHHHHHHHHH----c---CCC-----CCCHH-HHHHHHHHHHhcCCHHHHHH
Q 010740          249 -----NTVTQNIV---LGGYGKAGMFDQMERVLSGMLE----S---ATC-----KPDVW-TMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       249 -----~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~----~---~~~-----~~~~~-~~~~l~~~~~~~g~~~~a~~  307 (502)
                           ...+|..+   .-.+...|++.+|+++++....    .   ...     ..... .--.+.-++...|+.++|..
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence                 11123322   2335567899999999887721    1   000     00111 12234556677899999999


Q ss_pred             HHHHHHhCCCCCCHHHH----HHHHHHHHccCcHH-HHHHHH------------HHH-----------------------
Q 010740          308 WYEKFRNFGIDPETRTF----NILIGAYGKKRMYD-KMSSVM------------EYM-----------------------  347 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~-~a~~~~------------~~~-----------------------  347 (502)
                      +|..++... ++|....    |.|+..-.-..-++ .++..+            ..+                       
T Consensus       246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~  324 (652)
T KOG2376|consen  246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD  324 (652)
T ss_pred             HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            998888765 3443221    22211110000000 000000            000                       


Q ss_pred             ------HHcCCCCChHHHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH----
Q 010740          348 ------RKLQFPWTSSTYNNVIEAFSD--MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR----  415 (502)
Q Consensus       348 ------~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~----  415 (502)
                            ...........+.+++..+.+  ......+.+++...-+....-.....-..+......|+++.|.+++.    
T Consensus       325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~  404 (652)
T KOG2376|consen  325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE  404 (652)
T ss_pred             HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence                  000001112233333333222  22355566666655544222223445556666778888888888888    


Q ss_pred             ----HHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCcHHHHHHHH
Q 010740          416 ----LASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK--HCRPDSE----TFSIMTEAYAKEGMNDKVYALEQ  485 (502)
Q Consensus       416 ----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~  485 (502)
                          .+.+.+..  +.+...++..+.+.++.+.|..++......  .-.+...    ++.-++..-.+.|+-++|..+++
T Consensus       405 ~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le  482 (652)
T KOG2376|consen  405 SWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE  482 (652)
T ss_pred             hhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence                44444433  344566677777777777676666665532  0011222    33333334456788888888888


Q ss_pred             HHHHhhhhcc
Q 010740          486 EKLQMLLEAS  495 (502)
Q Consensus       486 ~~~~~~~~~~  495 (502)
                      +..+..+.+.
T Consensus       483 el~k~n~~d~  492 (652)
T KOG2376|consen  483 ELVKFNPNDT  492 (652)
T ss_pred             HHHHhCCchH
Confidence            8888655544

>PF13041 PPR_2: PPR repeat family

Probab=99.29  E-value=1.3e-11  Score=77.47  Aligned_cols=50  Identities=40%  Similarity=0.680  Sum_probs=34.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740          213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK  262 (502)
Q Consensus       213 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  262 (502)
                      ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56667777777777777777777777777777777777777777766653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.4e-08  Score=86.09  Aligned_cols=290  Identities=8%  Similarity=-0.046  Sum_probs=214.8

Q ss_pred             hcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740          156 KSGQPELARKVFNEMVEE-GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI  234 (502)
Q Consensus       156 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  234 (502)
                      -.++...|...+-.+... -++-|......+..++...|+.++|+..|++....+  +-+........-.+.+.|+++..
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence            334444444444433332 346678889999999999999999999999987642  22333344444556788999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          235 ETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       235 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                      ..+...+.... .-+...|..-.......++++.|+.+-++.++..  ..+...+-.-...+...|+.++|.--|+....
T Consensus       286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            99988887652 1234445554555667788999999999887642  34556666667888899999999999999886


Q ss_pred             CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH-HHHHh-cCCHhHHHHHHHHHHHcCCCCCH-
Q 010740          315 FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI-EAFSD-MGDAKHMEYTFEQMHAEGMKADT-  391 (502)
Q Consensus       315 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~m~~~~~~p~~-  391 (502)
                      .. +.+...|.-|+.+|...|++.+|...-+...+.-.. +..+...+. ..+.- ..--++|.++++...+.  .|+. 
T Consensus       363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~  438 (564)
T KOG1174|consen  363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT  438 (564)
T ss_pred             cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence            53 567899999999999999999998877766554222 555555552 23322 23357788888887663  6665 


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      ...+.+...|...|..++++.+++....  ..+|....+.|.+.+...+.+.+|...|......+
T Consensus       439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            3667778889999999999999998877  46888999999999999999999999999988764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.27  E-value=1e-08  Score=92.10  Aligned_cols=150  Identities=16%  Similarity=0.048  Sum_probs=82.4

Q ss_pred             cHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740          123 QWFQALQVFEMLKEQPFYQPK--EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV  200 (502)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  200 (502)
                      +.+.++.-+..+.......|+  ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            344444444444433212222  2345566666666677777776666666653 3456666666666666677777776


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      .|++..+..  +.+..+|..+..++...|++++|.+.|+...+...  +..........+...++.++|...|.+..
T Consensus       120 ~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        120 AFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            666666532  33455566666666666666666666666665422  22111111222334456666666665443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.27  E-value=1.4e-07  Score=88.25  Aligned_cols=201  Identities=11%  Similarity=-0.020  Sum_probs=94.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CC--hHHHHHHHHHHHh
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP-WT--SSTYNNVIEAFSD  368 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~  368 (502)
                      +...+...|++++|...+++..+.. +.+...+..+...|...|++++|...++........ ++  ...|..+...+..
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            3344445555555555555555433 333344444555555555555555555554443221 11  1233345555555


Q ss_pred             cCCHhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChHHHHHH--H-HHHHhc-CCCCChHHHHHHHHHHHHcC
Q 010740          369 MGDAKHMEYTFEQMHAEGM-KADTKTF-C--CLINGYANAGLFHKVISS--V-RLASKL-QIAENVSFYNAVISACIKAD  440 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~g  440 (502)
                      .|++++|..+|++...... .+..... +  .++.-+...|..+.+.++  + ...... ..............++...|
T Consensus       199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  278 (355)
T cd05804         199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG  278 (355)
T ss_pred             CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence            5666666666655532211 1111111 1  122222233322222222  1 111110 00111122224566677788


Q ss_pred             CHHHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          441 DLMEMERVYKRMKEKHCR-------P-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       441 ~~~~a~~~~~~~~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      +.++|..+++.+......       . ..........++...|++++|.+.+.+++.....
T Consensus       279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~  339 (355)
T cd05804         279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR  339 (355)
T ss_pred             CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            888888888887653211       0 1222223334567889999999999998887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.26  E-value=1.3e-06  Score=81.54  Aligned_cols=371  Identities=11%  Similarity=0.104  Sum_probs=182.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      ....+.-+..+|+...-...|+.....-.+.-....|...+......|-++.+..++++.++.    ++..-+..|..++
T Consensus       105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~  180 (835)
T KOG2047|consen  105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA  180 (835)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence            334455566777777888888766554212222346777777777777788888888887743    3444666777777


Q ss_pred             hCCCHHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPN-----CQPDVYTYSTLIKACVDAMRFEL---IETLYQDMDERSVTPNT--VTQNIVLGGY  260 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~~--~~~~~l~~~~  260 (502)
                      ..+++++|-+.+..+...+.     -+.+-..|..+-+..++..+.-.   ...+++.+...  -+|.  ..|..|.+.|
T Consensus       181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY  258 (835)
T ss_pred             hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence            77888877777766643310     02222333333333333222111   11122222111  1121  2344444444


Q ss_pred             hccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--------------------------------------------
Q 010740          261 GKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVF--------------------------------------------  296 (502)
Q Consensus       261 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------------------  296 (502)
                      .+.|.++.|..+|++.++.   ..++.-|+.+..+|                                            
T Consensus       259 Ir~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            4444444444444443322   11111111111111                                            


Q ss_pred             ----------------------HhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          297 ----------------------ANKGQVDMMERWYEKFRNFGIDP------ETRTFNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       297 ----------------------~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                                            +..|+..+....|.+..+. +.|      -...|..+.+.|-..|+.+.|..+|++..
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                                  1233344444455444432 111      12345666677777777777777777776


Q ss_pred             HcCCCCC---hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHhcCChH
Q 010740          349 KLQFPWT---SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK----------A-------DTKTFCCLINGYANAGLFH  408 (502)
Q Consensus       349 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~  408 (502)
                      +...+.-   ..+|..-...=.++.+++.|++++++....--.          |       +...|..++..--..|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            6544311   233444444445566677777766665432100          1       1223444444445566666


Q ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCcHHHHHHH
Q 010740          409 KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS-ETFSIMTEAYAK---EGMNDKVYALE  484 (502)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~  484 (502)
                      ....+|+.+.+..+-- +.+.-.....+.....++++.++|++-+..=-.|++ ..|+..+..+.+   .-..+.|..+|
T Consensus       495 stk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  495 STKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            6677777666654322 222222222334444555555555554443222332 255555544432   22456666666


Q ss_pred             HHHHHhhh
Q 010740          485 QEKLQMLL  492 (502)
Q Consensus       485 ~~~~~~~~  492 (502)
                      +++++..|
T Consensus       574 EqaL~~Cp  581 (835)
T KOG2047|consen  574 EQALDGCP  581 (835)
T ss_pred             HHHHhcCC
Confidence            66666544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.21  E-value=3.5e-07  Score=96.77  Aligned_cols=379  Identities=11%  Similarity=0.022  Sum_probs=235.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      ........+...|++.+|+..+......   ..-..........+...|+++.+..+++.+.......+..........+
T Consensus       343 lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~  419 (903)
T PRK04841        343 LHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA  419 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence            3344445566778888777654433211   1011122233345566788888888877653221112222334455566


Q ss_pred             HhCCCHHHHHHHHHHhhcCCC-C----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPN-C----QPD--VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT----VTQNIVLG  258 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~  258 (502)
                      ...|++++|..++......-. .    .+.  ......+...+...|+++.|...+++....-...+.    ...+.+..
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~  499 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE  499 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            788999999999987654210 0    111  112223344566789999999999987763111121    23455666


Q ss_pred             HHhccCChHHHHHHHHHHHHcCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH
Q 010740          259 GYGKAGMFDQMERVLSGMLESATC--KP--DVWTMNTILSVFANKGQVDMMERWYEKFRNF----GID--P-ETRTFNIL  327 (502)
Q Consensus       259 ~~~~~g~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l  327 (502)
                      .+...|++++|...+.+......-  .+  ....+..+...+...|++++|...+++....    +..  + ....+..+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            778899999999999887643211  11  1234556677888999999999998877652    211  1 22334555


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCCHH--HH--HHH
Q 010740          328 IGAYGKKRMYDKMSSVMEYMRKL----QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--MKADTK--TF--CCL  397 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~l  397 (502)
                      ...+...|++++|...+.+....    +.......+..+...+...|+.++|.+.+.+.....  ......  ..  ...
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  659 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR  659 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence            66677789999999998877553    111123445556677888999999999998875431  111111  10  112


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 010740          398 INGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVISACIKADDLMEMERVYKRMKEK----HCRPD-SETFSIMTE  469 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~  469 (502)
                      +..+...|+.+.|..++...........   ...+..+..++...|+.++|...+++....    |..++ ..+...+..
T Consensus       660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            2444568899999998776544221111   111346777888999999999999988753    33222 345667778


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhh
Q 010740          470 AYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ++.+.|+.++|.+.+.++++..
T Consensus       740 a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            8999999999999999999874

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.21  E-value=2.3e-06  Score=79.91  Aligned_cols=224  Identities=9%  Similarity=0.143  Sum_probs=142.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 010740          263 AGMFDQMERVLSGMLESATCKPD------VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE---TRTFNILIGAYGK  333 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  333 (502)
                      .|+..+-..++.+.++.  +.|.      ...|..+...|-..|+++.|..+|++..+...+--   ..+|......=.+
T Consensus       360 e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr  437 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR  437 (835)
T ss_pred             cCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence            35566666666666653  2232      34578888899999999999999999886543322   3345555555566


Q ss_pred             cCcHHHHHHHHHHHHHcCCC-----------C------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740          334 KRMYDKMSSVMEYMRKLQFP-----------W------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCC  396 (502)
Q Consensus       334 ~g~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  396 (502)
                      ..+++.|++++.......-.           +      +...|...++.-...|-++....+|+++.+..+. ++.....
T Consensus       438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N  516 (835)
T KOG2047|consen  438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN  516 (835)
T ss_pred             hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            77888888887766432111           1      2345666666667778888889999999887643 3444334


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHHH
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKA---DDLMEMERVYKRMKEKHCRPDSE-TF-SIMTEA  470 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~g~~p~~~-~~-~~l~~~  470 (502)
                      ....+-...-++++.++|++-...=-.|+ ..+|+..+..+.+.   -..+.|..+|++..+ |++|... |. -.....
T Consensus       517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l  595 (835)
T KOG2047|consen  517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL  595 (835)
T ss_pred             HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence            44445566667888888876655422333 45667666666542   367888888888888 5665433 22 222222


Q ss_pred             HHhcCCcHHHHHHHHHHHHh
Q 010740          471 YAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       471 ~~~~g~~~~A~~~~~~~~~~  490 (502)
                      --+.|....|+.+++++...
T Consensus       596 EEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  596 EEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHhhHHHHHHHHHHHHHhc
Confidence            23567777888888876553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.18  E-value=4.5e-07  Score=84.74  Aligned_cols=199  Identities=12%  Similarity=0.076  Sum_probs=92.7

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 010740          255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPET--RTFNILIGAY  331 (502)
Q Consensus       255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~  331 (502)
                      .+...+...|++++|.+.+++.++..  +.+...+..+..++...|++++|..++++...... .++.  ..|..+...+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            34445555666666666666655432  22344455555556666666666666655554321 1111  2233455555


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCC-hHHH-H--HHHHHHHhcCCHhHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHh
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWT-SSTY-N--NVIEAFSDMGDAKHMEYT--FEQMHAEGM--KADTKTFCCLINGYAN  403 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~  403 (502)
                      ...|++++|..+++.......... .... +  .++.-+...|....+.+.  +........  ............++..
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  276 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG  276 (355)
T ss_pred             HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence            666666666666665543222111 1111 1  112222223322222111  111110000  0111122245556667


Q ss_pred             cCChHHHHHHHHHHHhcCCC---C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          404 AGLFHKVISSVRLASKLQIA---E-----NVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .|+.+.|..+++.+......   -     .+...-....++...|+.++|.+.+......
T Consensus       277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77788888777766553211   0     1122222333456788999998888877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.3e-07  Score=86.16  Aligned_cols=368  Identities=13%  Similarity=0.076  Sum_probs=242.4

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLI  195 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  195 (502)
                      .....|+++.|+.+|.......  ++|...|..-..+|++.|++++|++=-.+-++.  .|+ ...|.....++.-.|++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence            3457899999999999988875  678889999999999999999998877777765  454 67899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHhc-------
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI---ETLYQDMDER---SVTPNTVTQNIVLGGYGK-------  262 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~---g~~~~~~~~~~l~~~~~~-------  262 (502)
                      ++|+.-|.+-.+..  +.+...++.+..++.......+.   -.++..+...   ........|..++..+-+       
T Consensus        87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            99999999987743  56677788888777211000000   0011111000   000011223333222211       


Q ss_pred             ---cCChHHHHHHHHHHH----HcC-------CCCC----------------------CHHHHHHHHHHHHhcCCHHHHH
Q 010740          263 ---AGMFDQMERVLSGML----ESA-------TCKP----------------------DVWTMNTILSVFANKGQVDMME  306 (502)
Q Consensus       263 ---~g~~~~a~~~~~~~~----~~~-------~~~~----------------------~~~~~~~l~~~~~~~g~~~~a~  306 (502)
                         -.++..+.-++....    ...       +..|                      -..-...+.++..+..+++.++
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence               111111111111000    000       0011                      1123456777788888999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH-------HHHHhcCCHhHHHHHH
Q 010740          307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI-------EAFSDMGDAKHMEYTF  379 (502)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~  379 (502)
                      +-+....+..  -+..-++....+|...|.+..+...-....+.|.. ...-|+.+.       .+|.+.++++.++..|
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            9999888754  55556677777888889888888777777666554 333333333       3555667888888888


Q ss_pred             HHHHHcCCCCCHHH-------------------------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740          380 EQMHAEGMKADTKT-------------------------FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS  434 (502)
Q Consensus       380 ~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  434 (502)
                      ++.......|+..+                         ...-...+.+.|++..|+..|.++++.. +.|...|..-.-
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence            88766544443322                         1112345677899999999999998886 778899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      +|.+.|.+..|++-.+..++.+. +....|.-=..++.-..++++|.+.|++.++..|...
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            99999999999998888887621 1333444445566667789999999999998876543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=8.7e-08  Score=80.66  Aligned_cols=329  Identities=12%  Similarity=0.090  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTA-LLAA  188 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~  188 (502)
                      .+..++..+.+..++++|++++....++.  +.+......|..+|....++..|-..++++-..  .|...-|.. -...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            36677888899999999999999887764  447778899999999999999999999999865  566666643 3567


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA--CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      +.+.+.+.+|+.+...|...    ++...-..-+.+  ....+++..+..++++....|   +..+.+...-...+.|++
T Consensus        88 LY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence            77899999999999888652    333222222222  345788888888888876432   455556666667789999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------CHHH--------HH
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP-------------ETRT--------FN  325 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~~--------~~  325 (502)
                      +.|.+-|+...+-.|..| ...|+..+ +..+.|+++.|++...+++++|++.             |+..        -+
T Consensus       161 EaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            999999999988888765 34566544 5567899999999999999998762             2111        12


Q ss_pred             HHHH-------HHHccCcHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          326 ILIG-------AYGKKRMYDKMSSVMEYMRKL-QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL  397 (502)
Q Consensus       326 ~l~~-------~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  397 (502)
                      .++.       .+.+.|+++.|.+-+-.|.-. ....|++|...+.-.-. .+++.+..+-+.-+.... +....||..+
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence            2333       345667888887777666432 23346677666543322 344555555555555543 2345788888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 010740          398 INGYANAGLFHKVISSVRLASKLQI-AENVSFYNAVISACIK-ADDLMEMERVYKRMKE  454 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~  454 (502)
                      +-.||+..-++.|-.++.+-..... -.+...|+ |++++.. .-..++|.+-++.+..
T Consensus       317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~  374 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG  374 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8888888888888877764222211 12344444 3444433 3466777766665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=6.5e-07  Score=77.39  Aligned_cols=150  Identities=12%  Similarity=0.044  Sum_probs=78.0

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID  196 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  196 (502)
                      .+...+++..|+.+++.....+. .....+-..+..++...|++++|...+.-+.... .++...+..|.-++.-.|.+.
T Consensus        31 dfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence            34455666666666665543321 1111233344455566677777777776665543 455566666666666666666


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +|..+-.+..+      +...-..|+....+.++-++...+.+.+.+.     ..---.|.......-.+.+|.+++..+
T Consensus       109 eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  109 EAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             HHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            66666554422      2222333444445556655555555444332     122223333333344566677777766


Q ss_pred             HHc
Q 010740          277 LES  279 (502)
Q Consensus       277 ~~~  279 (502)
                      +..
T Consensus       178 L~d  180 (557)
T KOG3785|consen  178 LQD  180 (557)
T ss_pred             Hhc
Confidence            554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.11  E-value=2.1e-06  Score=81.88  Aligned_cols=333  Identities=13%  Similarity=0.056  Sum_probs=214.9

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT----------------  178 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------  178 (502)
                      --.+...|+++.+.+.|+.....  .-...+.|+.+...+...|.-..|..+++.-....-.|+                
T Consensus       330 t~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l  407 (799)
T KOG4162|consen  330 TFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL  407 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence            34566778999998888876543  122344566666666666665555555554443211121                


Q ss_pred             -------------------------HHHHHHHHHHHHhC-----------CCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          179 -------------------------PELYTALLAAYCRN-----------SLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       179 -------------------------~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                                               ...|..+.-+|...           ....++++.+++..+.+...|+...|  +.
T Consensus       408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--la  485 (799)
T KOG4162|consen  408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LA  485 (799)
T ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HH
Confidence                                     12222222222211           12345667777776655444444444  44


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC------------------
Q 010740          223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP------------------  284 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------  284 (502)
                      --|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..++..|..-                  
T Consensus       486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~  565 (799)
T KOG4162|consen  486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE  565 (799)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence            55677889999999999999887777899999999999999999999999998877644311                  


Q ss_pred             CHHHHHHHHHHHHhc------C-----------------CHHHHHHHHHHHH--------hCC----CC-------CC--
Q 010740          285 DVWTMNTILSVFANK------G-----------------QVDMMERWYEKFR--------NFG----ID-------PE--  320 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~------g-----------------~~~~a~~~~~~~~--------~~~----~~-------~~--  320 (502)
                      -..|...++..+-..      +                 +..++.+....+.        ..|    ++       |+  
T Consensus       566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~  645 (799)
T KOG4162|consen  566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL  645 (799)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence            012223333222200      0                 0111111111110        001    00       11  


Q ss_pred             ----HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHH
Q 010740          321 ----TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFC  395 (502)
Q Consensus       321 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~  395 (502)
                          ...|......+.+.+..++|..-+.+..+.... ....|......+...|.+++|.+.|......  .|+ .....
T Consensus       646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~  722 (799)
T KOG4162|consen  646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMT  722 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHH
Confidence                112334555666777777887776666665432 6667777778888899999999999998875  454 45888


Q ss_pred             HHHHHHHhcCChHHHHH--HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          396 CLINGYANAGLFHKVIS--SVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ++...+.+.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|+...+.
T Consensus       723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            99999999999888887  999999987 778999999999999999999999999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=1.6e-07  Score=89.66  Aligned_cols=321  Identities=12%  Similarity=0.077  Sum_probs=208.8

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-------CCCCHHHHHHHHHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-G-------IEPTPELYTALLAA  188 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~~  188 (502)
                      -|+..|+.+.|.+-.+.++.       ...|..+..+|.+..+++-|.-.+..|... |       .+.+...-......
T Consensus       737 fyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL  809 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL  809 (1416)
T ss_pred             EEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence            35667999999988887764       458999999999999999888877777532 1       11111222233344


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      ....|.+++|..+|++.++          |..|=..|...|.+++|.++-+.=.+-  . =..||......+-..++.+.
T Consensus       810 AieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHH
Confidence            5677999999999999876          444556677889999999886653222  2 23567777777777888888


Q ss_pred             HHHHHHHH----------HHcC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          269 MERVLSGM----------LESA--------TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA  330 (502)
Q Consensus       269 a~~~~~~~----------~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  330 (502)
                      |++.|++.          +...        .-..|...|.......-..|+.+.|+.+|.....         |-.+++.
T Consensus       877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI  947 (1416)
T KOG3617|consen  877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI  947 (1416)
T ss_pred             HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence            88887643          1110        0122444555555556667777777777766553         4556666


Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 010740          331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL----  406 (502)
Q Consensus       331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----  406 (502)
                      .|-.|+.++|-++-++-.      |....-.+.+.|...|++.+|..+|.+...         |...|+.|-..+-    
T Consensus       948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred             EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHH
Confidence            677788888877765432      556677888999999999999999987653         3334443333322    


Q ss_pred             -----------hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCC--CCCHHHHH
Q 010740          407 -----------FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK--------RMKEKHC--RPDSETFS  465 (502)
Q Consensus       407 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~g~--~p~~~~~~  465 (502)
                                 .-.|-.+|+   +.|.     -+...+..|-+.|.+.+|+++-=        +++..++  .-|+...+
T Consensus      1013 ~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred             HHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence                       222222332   2221     12234556778888888876532        1222223  34677788


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          466 IMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       466 ~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      --.+.++...++++|+.++-.+..
T Consensus      1085 RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH
Confidence            778888889999999888766554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=2.1e-06  Score=79.34  Aligned_cols=331  Identities=12%  Similarity=0.052  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      ..-+=++.+...|++++|.+...+++..+ +-+...+..-+-++++.+++++|+.+.+.-..   ...+...+..-..+.
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHH
Confidence            34445677788999999999999999876 66778888888899999999999976655332   112222222334455


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------------------------
Q 010740          226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT------------------------  281 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------------  281 (502)
                      .+.+..++|+..++-....    |..+...-...+.+.|++++|+++|+.+.+...                        
T Consensus        90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            6789999999998832222    344667777889999999999999998854321                        


Q ss_pred             ---CCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCC-------CCCCH------H-HHHHHHHHHHccCcHHHHH
Q 010740          282 ---CKPDVWTMNTI---LSVFANKGQVDMMERWYEKFRNFG-------IDPET------R-TFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       282 ---~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~g~~~~a~  341 (502)
                         ..| ..+|..+   .-.+...|++.+|+++++.....+       -.-+.      . .-..|.-.+-..|+.++|.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence               111 1123222   334567899999999998883211       01111      1 1123444566789999999


Q ss_pred             HHHHHHHHcCCCCChH----HHHHHHHHHHhcCCHh----------------HHHHHH----------------------
Q 010740          342 SVMEYMRKLQFPWTSS----TYNNVIEAFSDMGDAK----------------HMEYTF----------------------  379 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~----------------~a~~~~----------------------  379 (502)
                      .++..+++.... |..    .-|.|+..-....-.+                .++.-|                      
T Consensus       245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999887654 332    2222221111000000                000000                      


Q ss_pred             ---HHHHHc--CCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHH-
Q 010740          380 ---EQMHAE--GMKADTKTFCCLINGYAN--AGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYK-  450 (502)
Q Consensus       380 ---~~m~~~--~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~-  450 (502)
                         ++....  +..|. ..+.+++..+..  ......+.+++...-+.. +.+ ..+.-..+......|+++.|.+++. 
T Consensus       324 ~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  324 DQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             HHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence               000000  11222 234444443332  223566677666665543 333 4455566777888999999999999 


Q ss_pred             -------HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          451 -------RMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       451 -------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                             .+.+.+..  +.+...++..+.+.++.+.|..++.++++-
T Consensus       402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~  446 (652)
T KOG2376|consen  402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKW  446 (652)
T ss_pred             HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence                   55554444  445556677788888888888888887764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=2.5e-06  Score=73.54  Aligned_cols=212  Identities=10%  Similarity=0.013  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELY-TALLAAY  189 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~  189 (502)
                      -..+-..+..+|++.+|+.-|..+.+.+  +.+-.++..-...|...|+-..|+.=+.+.++.  .||-..- ..-...+
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            3344455555566666666666555432  222224444445555555555555555555544  3443221 1223344


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM  269 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a  269 (502)
                      .++|.+++|..-|+.+...   .|+..+   ...++.+.--.++-..                ....+..+.-.|+...|
T Consensus       117 lK~Gele~A~~DF~~vl~~---~~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a  174 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQH---EPSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA  174 (504)
T ss_pred             hhcccHHHHHHHHHHHHhc---CCCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence            4555555555555555543   222211   1111111111111111                12223345556777777


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          270 ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      +..+..+++..  +-+...+..-..+|...|++..|+.-++..-+.. ..+..++-.+-..+...|+.+.++....+..+
T Consensus       175 i~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  175 IEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            77777776632  3466666667777777777777777666665543 34455555666667777777777777777666


Q ss_pred             cC
Q 010740          350 LQ  351 (502)
Q Consensus       350 ~~  351 (502)
                      .+
T Consensus       252 ld  253 (504)
T KOG0624|consen  252 LD  253 (504)
T ss_pred             cC
Confidence            53

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=5.1e-06  Score=71.74  Aligned_cols=270  Identities=13%  Similarity=0.081  Sum_probs=187.4

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----H-----------
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP----E-----------  180 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~-----------  180 (502)
                      .|...|+-..|+.-+..+.+   .+||-. +-..-...+.+.|.++.|..=|+..++..  |+.    .           
T Consensus        81 ~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~  155 (504)
T KOG0624|consen   81 VYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEH  155 (504)
T ss_pred             HHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHH
Confidence            35556777777777777766   366644 33345577889999999999999999874  422    1           


Q ss_pred             -HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          181 -LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG  259 (502)
Q Consensus       181 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~  259 (502)
                       .....+..+...|+...|+++...+.+.  .+.|...|..-..+|...|++..|+.-++...+..- .+..++..+-..
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L  232 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQL  232 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence             1233445556678888888888888874  367888888888888888888888887777666533 366677777788


Q ss_pred             HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740          260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  339 (502)
                      +...|+.+.++..+++.++   +.||...+-..-      ..+.+..+.++.|.+                ....++|.+
T Consensus       233 ~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~Y------KklkKv~K~les~e~----------------~ie~~~~t~  287 (504)
T KOG0624|consen  233 LYTVGDAENSLKEIRECLK---LDPDHKLCFPFY------KKLKKVVKSLESAEQ----------------AIEEKHWTE  287 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHc---cCcchhhHHHHH------HHHHHHHHHHHHHHH----------------HHhhhhHHH
Confidence            8888888888888888765   356544322211      112223333333322                234577778


Q ss_pred             HHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010740          340 MSSVMEYMRKLQFPWTSSTY---NNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVR  415 (502)
Q Consensus       340 a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~  415 (502)
                      +++-.+...+.........|   ..+-.++...+++.+|+..-.+..+.  .|| ..++.--..+|.-...++.|+.-|+
T Consensus       288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye  365 (504)
T KOG0624|consen  288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYE  365 (504)
T ss_pred             HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            88877777776554333333   34455666778999999999888874  455 7788888899999999999999999


Q ss_pred             HHHhcC
Q 010740          416 LASKLQ  421 (502)
Q Consensus       416 ~~~~~~  421 (502)
                      .+.+.+
T Consensus       366 ~A~e~n  371 (504)
T KOG0624|consen  366 KALELN  371 (504)
T ss_pred             HHHhcC
Confidence            998865

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=7.5e-07  Score=75.18  Aligned_cols=358  Identities=9%  Similarity=-0.005  Sum_probs=219.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMK-LLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA--YC  190 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~  190 (502)
                      +.-++-...++..|.++|+.+...   .|...-|.. -.+.+.+.+.+..|+.+...|...   ++...-..-+.+  ..
T Consensus        50 LgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY  123 (459)
T KOG4340|consen   50 LGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY  123 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence            344566788999999999998874   555555542 356777889999999999988743   333222222333  23


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      ..+++..+..++++....    -+..+.+...-...+.|+++.|.+-|+...+-|---....|+..+ +..+.|+++.|+
T Consensus       124 se~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasAL  198 (459)
T KOG4340|consen  124 SEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASAL  198 (459)
T ss_pred             ccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHH
Confidence            467888888888887642    344455555555678999999999999988754333556676555 556778999999


Q ss_pred             HHHHHHHHcCCCCCC----------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH
Q 010740          271 RVLSGMLESATCKPD----------------------------VWTMNTILSVFANKGQVDMMERWYEKFRNF-GIDPET  321 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~  321 (502)
                      +...+++++ |++..                            +..+|.-...+.+.|+++.|.+-+..|-.+ ....|+
T Consensus       199 k~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP  277 (459)
T KOG4340|consen  199 KHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP  277 (459)
T ss_pred             HHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence            999999876 44421                            122444445567888999999888877543 224566


Q ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 010740          322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KADTKTFCCLING  400 (502)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~  400 (502)
                      .|...+.-.-. .+++.+..+-+.-+...++ -...||..++-.||+..-++.|-.++.+=...-. -.+...|+ |+.+
T Consensus       278 vTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLda  354 (459)
T KOG4340|consen  278 VTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDA  354 (459)
T ss_pred             hhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHH
Confidence            77666543322 3455555555566666655 3668899999999999999988888765221111 11233333 3444


Q ss_pred             HH-hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          401 YA-NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM---EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       401 ~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      +. ..-..+++.+-++.+.+.- .........-+.--...++-.   .+++-+++..+.    -.....+-...|.+..+
T Consensus       355 LIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~D  429 (459)
T KOG4340|consen  355 LITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLED  429 (459)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccc
Confidence            43 4456777777666544321 111111111111111222222   222333333332    12223333456778899


Q ss_pred             cHHHHHHHHHHHHhh
Q 010740          477 NDKVYALEQEKLQML  491 (502)
Q Consensus       477 ~~~A~~~~~~~~~~~  491 (502)
                      +..+.++|....+.-
T Consensus       430 y~~vEk~Fr~SvefC  444 (459)
T KOG4340|consen  430 YPMVEKIFRKSVEFC  444 (459)
T ss_pred             cHHHHHHHHHHHhhh
Confidence            999999998877654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=2.3e-08  Score=88.44  Aligned_cols=253  Identities=9%  Similarity=0.104  Sum_probs=146.3

Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  265 (502)
                      ++-+.-.|.+..++.-.+ ..... -..+......+.+++...|+++.+.   .++.... .|.......+...+...++
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence            345556788888886665 32221 1123334555677777788766543   3433332 5666666666655554455


Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740          266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME  345 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  345 (502)
                      -+.+..-+++.+.......+..........+...|++++|++++...      .+.......+..|.+.++.+.|.+.++
T Consensus        82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555444332211122233333334556678888888777532      455666677778888888888888888


Q ss_pred             HHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          346 YMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      .|.+.+   +..+...++.++..    .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+
T Consensus       156 ~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  156 NMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             HHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             HHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            877653   22344445554433    23577788888886554 45677777777777778888888888777776554


Q ss_pred             CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 010740          422 IAENVSFYNAVISACIKADDL-MEMERVYKRMKEK  455 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  455 (502)
                       +-+..+...++.+....|+. +.+.+++.++...
T Consensus       232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence             44555666666666666766 5566777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.00  E-value=7.1e-06  Score=86.96  Aligned_cols=308  Identities=9%  Similarity=-0.032  Sum_probs=200.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC----H
Q 010740          148 MKLLVLLGKSGQPELARKVFNEMVEEGI------EPT--PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD----V  215 (502)
Q Consensus       148 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~  215 (502)
                      ......+...|++++|..+++.....--      .+.  ......+...+...|++++|...+++...... ..+    .
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~  491 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHH
Confidence            4445566788999999999988754310      111  12223334556689999999999998765211 112    1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCC--C-
Q 010740          216 YTYSTLIKACVDAMRFELIETLYQDMDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES---ATCK--P-  284 (502)
Q Consensus       216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~--~-  284 (502)
                      ...+.+...+...|++++|...+.+....    |. .....++..+...+...|+++.|...+++....   .+..  + 
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            34556667778899999999999887642    11 111234556677788999999999998886542   1111  1 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFG--IDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-TSSTY  359 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~  359 (502)
                      ....+..+...+...|++++|...+++.....  ..+  ....+..+...+...|+++.|.+.+.......... ....+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            22344556667788899999999998876531  112  23344556667788999999999988875531111 11111


Q ss_pred             -----HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-Ch
Q 010740          360 -----NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT---KTFCCLINGYANAGLFHKVISSVRLASKL----QIAE-NV  426 (502)
Q Consensus       360 -----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~  426 (502)
                           ...+..+...|+.+.|...+............   ..+..+..++...|++++|...++.+...    +... ..
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a  731 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN  731 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence                 11224445678999999988775542211111   12346677888999999999999877654    2222 23


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      .+...+..++.+.|+.++|...+.+..+..
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            456677788899999999999999998763

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2.5e-07  Score=85.10  Aligned_cols=254  Identities=10%  Similarity=0.063  Sum_probs=176.1

Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      -+.+.|++.+|.-.|+...+.+  +.+...|..|.......++-..|+..+++..+.... |......|.-.|...|.-.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            3456777888888887777643  566777887777777777777888888877776433 6677777777788888777


Q ss_pred             HHHHHHHHHHHcCC-----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740          268 QMERVLSGMLESAT-----CK--PDVWTMNTILSVFANKGQVDMMERWYEKF-RNFGIDPETRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       268 ~a~~~~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~  339 (502)
                      .|++.++.-+....     ..  ++...-..  ........+....++|-++ ...+..+|..+...|.-.|.-.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            88887777654320     00  00000000  1122233334445555444 344445777888888888888899999


Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      |.+-|+.+....+. |..+||.|...++...+.++|+..|++.++.  +|..+ ....|.-+|...|.+++|.+.|-.++
T Consensus       449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999988887766 8889999999999999999999999998874  66653 56678888999999999988876554


Q ss_pred             hcC---------CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740          419 KLQ---------IAENVSFYNAVISACIKADDLMEMERVY  449 (502)
Q Consensus       419 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~  449 (502)
                      ...         ..++..+|..|=.++.-.++.|-+.+..
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            431         1224567888877787788877655543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.99  E-value=1.7e-08  Score=89.33  Aligned_cols=151  Identities=13%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             HHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hc
Q 010740          258 GGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY----GK  333 (502)
Q Consensus       258 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~  333 (502)
                      ..+...|++++|++++...       .+.......+.+|.+.++++.|.+.++.|.+.+  .| .+...+..++    ..
T Consensus       110 ~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g  179 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATG  179 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhC
Confidence            3445556666666555422       244455555666666666666666666665432  22 2333333332    22


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHH
Q 010740          334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-HKVIS  412 (502)
Q Consensus       334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~  412 (502)
                      .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..++..++.+....|+. +.+.+
T Consensus       180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~  257 (290)
T PF04733_consen  180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER  257 (290)
T ss_dssp             TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence            33566777777776554 33466666667777777777777777777665543 22455666666666666665 45556


Q ss_pred             HHHHHHhc
Q 010740          413 SVRLASKL  420 (502)
Q Consensus       413 ~~~~~~~~  420 (502)
                      ++.++...
T Consensus       258 ~l~qL~~~  265 (290)
T PF04733_consen  258 YLSQLKQS  265 (290)
T ss_dssp             HHHHCHHH
T ss_pred             HHHHHHHh
Confidence            66666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=1.2e-07  Score=87.21  Aligned_cols=251  Identities=10%  Similarity=0.028  Sum_probs=190.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740          224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD  303 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (502)
                      -+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+.-+.+.++-.  +.+......|.-.|...|.-.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence            456789999999999999888554 78899999999999999999999999987642  346778888889999999999


Q ss_pred             HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHhH
Q 010740          304 MMERWYEKFRNFGID--------PETRTFNILIGAYGKKRMYDKMSSVMEYMRK-LQFPWTSSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       304 ~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  374 (502)
                      +|++.++.-+....+        ++...-..  ..+.....+....++|-++.. .+..+|..+...|.-.|--.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999887653311        00000000  122233444555556655544 4445788999999999999999999


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740          375 MEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRM  452 (502)
Q Consensus       375 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  452 (502)
                      |...|+..+..  +| |..+|+.|...++...+.++|+..|+++++.  .|+ +.+...|.-.|...|.+++|.+.|=..
T Consensus       449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999985  45 5678999999999999999999999999985  454 555566888899999999999988765


Q ss_pred             HHC---------CCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740          453 KEK---------HCRPDSETFSIMTEAYAKEGMNDKVYAL  483 (502)
Q Consensus       453 ~~~---------g~~p~~~~~~~l~~~~~~~g~~~~A~~~  483 (502)
                      +..         +..++...|.+|=.++.-.++.|-+.+.
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            532         2233567898888888888888865544

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=1.9e-06  Score=77.52  Aligned_cols=204  Identities=7%  Similarity=-0.060  Sum_probs=91.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH--HH
Q 010740          263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY--DK  339 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~  339 (502)
                      .++.++|+.+..++++..  +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.  ++
T Consensus        50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence            344444455444444321  112223333333333333 3445555555544432 33333444333333333331  34


Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----hHHHHH
Q 010740          340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA---GL----FHKVIS  412 (502)
Q Consensus       340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a~~  412 (502)
                      ++.+++.+.+.+.. +..+|+....++...|+++++++.++++++.+.. +...|+.....+.+.   |.    .++.++
T Consensus       127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence            45555555554443 5555555555555555555555555555554322 233333333333222   11    134444


Q ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          413 SVRLASKLQIAENVSFYNAVISACIKA----DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +...++... +-|...|+.+...+...    +...+|.+.+.+..+.++. +......|+..|+.
T Consensus       205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~  267 (320)
T PLN02789        205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence            444444443 44556666665555552    2334465666555543322 45555566666654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=2.5e-06  Score=80.86  Aligned_cols=221  Identities=10%  Similarity=0.073  Sum_probs=168.8

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740          177 PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV  256 (502)
Q Consensus       177 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  256 (502)
                      |--..-..+...+...|-...|..+|+++..          |..++.+|...|+..+|..+..+..++  +||...|..+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            3334445667788888889999999888753          666888888889888888888887773  6788888888


Q ss_pred             HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740          257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM  336 (502)
Q Consensus       257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  336 (502)
                      .+......-+++|.++.+....+        +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            88887777888888888776332        12222223345788889988888776654 5556778778888888899


Q ss_pred             HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740          337 YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL  416 (502)
Q Consensus       337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (502)
                      ++.+.+.|.......+. +...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+......|.+++|.+.+..
T Consensus       535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999888888776554 67889999999999999999999999888876 44556677777778888999999998887


Q ss_pred             HHhc
Q 010740          417 ASKL  420 (502)
Q Consensus       417 ~~~~  420 (502)
                      +.+.
T Consensus       613 ll~~  616 (777)
T KOG1128|consen  613 LLDL  616 (777)
T ss_pred             HHHh
Confidence            7654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.3e-05  Score=78.76  Aligned_cols=303  Identities=11%  Similarity=0.161  Sum_probs=138.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      |.+.....+.++...+-+.+..++++++.-..  +.-+...-|.|+-...+. +.....++.+++...+  .|+      
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD--a~~------ 1053 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--APD------ 1053 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC--chh------
Confidence            45556666677777777777777777765331  111223334444444333 3345555655554422  222      


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC---------------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740          221 LIKACVDAMRFELIETLYQDMDERSV---------------------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES  279 (502)
Q Consensus       221 ll~~~~~~~~~~~a~~~~~~~~~~g~---------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  279 (502)
                      +...+...+-+++|..+|+...-.+-                     --....|..+..+-.+.|.+.+|.+-|-+.   
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            22334444455555555554321100                     002233444444444444444444333222   


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHH
Q 010740          280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY  359 (502)
Q Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  359 (502)
                          .|+..|..++..+.+.|.|++..+++...++..-.|..  -+.|+-+|++.++..+..+++.       -|+....
T Consensus      1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred             ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence                13334444444444444444444444433333222222  2234444444444333332221       1233333


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 010740          360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA  439 (502)
Q Consensus       360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  439 (502)
                      ..+.+-|...|.++.|.-+|..         ..-|..|...+...|+++.|...-++      ..+..+|..+..+|...
T Consensus      1198 ~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhch
Confidence            3333334444444444333322         12244444555555555555443332      23455666666666655


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          440 DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       440 g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      +.+.-|     +|...++-....-..-+++.|-..|-+++.+.+++..+.+
T Consensus      1263 ~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1263 EEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred             hhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence            544322     3333333344555666777777777777777777766654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.88  E-value=3.2e-06  Score=85.65  Aligned_cols=238  Identities=10%  Similarity=0.059  Sum_probs=190.9

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740          247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP---DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRT  323 (502)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  323 (502)
                      +-....|-..|......++.++|.+++++.+..-++.-   -...|.++++.-..-|.-+...++|+++.+.  ......
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            33566788888899999999999999999987543322   2346778888888888889999999999874  344567


Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---TKTFCCLING  400 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~  400 (502)
                      |..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++.+-+.|..++.+..+.  -|-   .....-.+..
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence            89999999999999999999999988754 37889999999999999999999999998875  343   2344455556


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCcH
Q 010740          401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS--ETFSIMTEAYAKEGMND  478 (502)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~  478 (502)
                      -.+.|+.+.+..+|+..... .|-....|+.+++.-.++|+.+.+..+|++....++.|-.  ..|...+..--+.|+-+
T Consensus      1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            67899999999999988775 4667889999999999999999999999999999887753  36677777667778876


Q ss_pred             HHHHHHHHHHHh
Q 010740          479 KVYALEQEKLQM  490 (502)
Q Consensus       479 ~A~~~~~~~~~~  490 (502)
                      .+..+=.++.+.
T Consensus      1689 ~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1689 NVEYVKARAKEY 1700 (1710)
T ss_pred             hHHHHHHHHHHH
Confidence            666655555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.88  E-value=3.1e-06  Score=85.78  Aligned_cols=207  Identities=10%  Similarity=0.042  Sum_probs=124.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-GIE---PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYT  217 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  217 (502)
                      -+...|...|......++.++|++++++++.. ++.   --...|.++++.-...|.-+...++|+++.+.   -..-..
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence            34456777777777777777777777776643 111   11245666666655666666667777776653   112234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010740          218 YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFA  297 (502)
Q Consensus       218 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (502)
                      |..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++...-.-......-.+..-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            666667777777777777777777654 2235566667777777777767777777666553211112333444445555


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 010740          298 NKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP  353 (502)
Q Consensus       298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  353 (502)
                      +.|+.+.+..+|+..+... +.-...|+.+++.-.+.|+.+.++.+|+++...++.
T Consensus      1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            6666666666666665432 444556666666666666666666666666666554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=1e-06  Score=83.45  Aligned_cols=223  Identities=12%  Similarity=0.090  Sum_probs=177.7

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010740          247 TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI  326 (502)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  326 (502)
                      +|-...-..+...+...|-...|..++++..          .|..++.+|...|+.++|..+..+..+  -+|+...|..
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~  462 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL  462 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence            3444445567778888999999999998772          477788999999999999999988876  3789999999


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740          327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL  406 (502)
Q Consensus       327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  406 (502)
                      +.+......-+++|+++.+.....       .-..+.....+.++++++.+.|+.-.+.. .....+|..+..+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            998888888889999998865443       22222333345788999999998877653 3356788888888889999


Q ss_pred             hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740          407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE  486 (502)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  486 (502)
                      ++.|.+.|....... +.+...||.+-.+|.+.|+..+|...+.+..+.+.. +...|...+-...+.|.+++|++.+.+
T Consensus       535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence            999999998887754 567788999999999999999999999999887633 667788888888999999999999999


Q ss_pred             HHHhh
Q 010740          487 KLQML  491 (502)
Q Consensus       487 ~~~~~  491 (502)
                      +..+.
T Consensus       613 ll~~~  617 (777)
T KOG1128|consen  613 LLDLR  617 (777)
T ss_pred             HHHhh
Confidence            88764

>PLN02789 farnesyltranstransferase

Probab=98.87  E-value=5.6e-06  Score=74.44  Aligned_cols=136  Identities=9%  Similarity=-0.066  Sum_probs=82.4

Q ss_pred             HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH--
Q 010740          119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG-QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI--  195 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--  195 (502)
                      ...++.++|+.+++.+.+..  +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+.  
T Consensus        48 ~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence            34567777777777777653  334446666666666666 4677777777776654 44555666555555555542  


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY  260 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~  260 (502)
                      ++++.+++++.+.+  +-+..+|+...-++...|+++++++.++++++.++. |...|+.....+
T Consensus       125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl  186 (320)
T PLN02789        125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence            55666666666542  456666666666666666677777777776666544 455555544433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.9e-06  Score=78.85  Aligned_cols=339  Identities=16%  Similarity=0.112  Sum_probs=220.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcC
Q 010740          151 LVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAM  229 (502)
Q Consensus       151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~  229 (502)
                      ..+....|+++.|...|-+.+... ++|...|..-..+|...|++++|++=-.+..+.   .|+ ...|+....++.-.|
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcc
Confidence            356678899999999999999886 568899999999999999999999888877764   454 457999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH---HHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcC----
Q 010740          230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM---ERVLSGMLESAT--CKPDVWTMNTILSVFANKG----  300 (502)
Q Consensus       230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g----  300 (502)
                      ++++|+.-|.+-++... .+...++.+..++.......+.   -.++..+.....  .......|..++..+-+.-    
T Consensus        85 ~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             cHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            99999999999887633 3667777777776211000000   001111100000  0001112333332221110    


Q ss_pred             ---CHHHHHHHHHHHHh--------CC-------CCC----------------------CHHHHHHHHHHHHccCcHHHH
Q 010740          301 ---QVDMMERWYEKFRN--------FG-------IDP----------------------ETRTFNILIGAYGKKRMYDKM  340 (502)
Q Consensus       301 ---~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a  340 (502)
                         ..+......-.+..        .+       ..|                      -..-...+.++..+..+++.+
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence               01111111111110        00       011                      011235567777778889999


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHhcCChHHHHHHH
Q 010740          341 SSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--D----TKTFCCLINGYANAGLFHKVISSV  414 (502)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~----~~~~~~l~~~~~~~g~~~~a~~~~  414 (502)
                      .+-+....+..  .+..-++....+|...|.+..+...-....+.|-..  +    ...+..+..+|.+.++++.++..|
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            99998888876  377777888888999998888777776666654211  1    112233445666778889999888


Q ss_pred             HHHHhcCCCCChHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740          415 RLASKLQIAENVSF-------------------------YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE  469 (502)
Q Consensus       415 ~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  469 (502)
                      .........|+...                         ...-...+.+.|++..|++.|.+++.... -|...|....-
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            87655433332111                         11124556788999999999999999863 37889999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740          470 AYAKEGMNDKVYALEQEKLQMLLEASGH  497 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~  497 (502)
                      +|.+.|.+..|++-.+..+++.|.....
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            9999999999999999988887665443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.85  E-value=5.4e-06  Score=78.66  Aligned_cols=104  Identities=20%  Similarity=0.251  Sum_probs=46.9

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740          262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  341 (502)
                      ....|.+|+.+++.+..+   +....-|..+...|...|+++.|.++|.+..         .++-.|..|.+.|+|+.|.
T Consensus       744 ~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence            334444555555444221   1122334445555555555555555554321         2334455555555555555


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740          342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF  379 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  379 (502)
                      ++-.+.  .|.......|-.-..-+-.+|++.+|.++|
T Consensus       812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            543322  222223344444444444555555555444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=5.3e-05  Score=74.73  Aligned_cols=44  Identities=14%  Similarity=0.036  Sum_probs=29.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ  159 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  159 (502)
                      +....-++++..--+.+++...+.|  .-|..++|+|...|...++
T Consensus       844 Lv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNN  887 (1666)
T KOG0985|consen  844 LVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNN  887 (1666)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCC
Confidence            4444556677777777777777777  5577788888777765443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.81  E-value=3.8e-06  Score=82.31  Aligned_cols=367  Identities=11%  Similarity=-0.017  Sum_probs=211.9

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740          122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT  201 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  201 (502)
                      .+...|+..|-......  +.=...|..|...|+...+...|.+.|+...+.+ .-+...+......|++..+++.|..+
T Consensus       472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence            34666666665555432  2224488999999998889999999999998775 45677888899999999999999998


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 010740          202 LNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT  281 (502)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  281 (502)
                      .-...+......-...|....-.|.+.++...+..-|+...+..+. |...|..+..+|...|++..|.++|.+...   
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~---  624 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL---  624 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh---
Confidence            5444332111111223444444567788889999999988877554 888999999999999999999999988754   


Q ss_pred             CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCcHH-------HHHHHHHHH
Q 010740          282 CKPDVWT-MNTILSVFANKGQVDMMERWYEKFRNFG------IDPETRTFNILIGAYGKKRMYD-------KMSSVMEYM  347 (502)
Q Consensus       282 ~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~-------~a~~~~~~~  347 (502)
                      +.|+... ---..-.-+..|.+.++...+.......      ..--..++-.+...+.-.|-..       ++.+.|.-.
T Consensus       625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            3444322 1122334567889999988887776421      1111222222222222233333       333333333


Q ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHh------HHHHHH-HHHHHcCC--------------------CCCHHHHHHHHHH
Q 010740          348 RKLQFPWTSSTYNNVIEAFSDMGDAK------HMEYTF-EQMHAEGM--------------------KADTKTFCCLING  400 (502)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~m~~~~~--------------------~p~~~~~~~l~~~  400 (502)
                      .......+...|-.+.++|.-.-..+      ....++ .+....+.                    ..+..+|..|+..
T Consensus       705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN  784 (1238)
T ss_pred             HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence            33221223333333333221110000      000111 11111111                    1123344444443


Q ss_pred             HHh----cC----ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          401 YAN----AG----LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       401 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      |.+    .|    +...|+..+....+.. ..+..+|+.|... ...|.+.-|..-|-+-+... +-...+|..+...|.
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l  861 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL  861 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence            332    11    2235556666655543 4456666666554 44466666666555554432 225567777777777


Q ss_pred             hcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          473 KEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       473 ~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      +..+++-|...|...+.+.|.+.-.|
T Consensus       862 ~n~d~E~A~~af~~~qSLdP~nl~~W  887 (1238)
T KOG1127|consen  862 ENQDFEHAEPAFSSVQSLDPLNLVQW  887 (1238)
T ss_pred             ecccHHHhhHHHHhhhhcCchhhHHH
Confidence            77788888888877777777665554

>PF12854 PPR_1: PPR repeat

Probab=98.80  E-value=6.6e-09  Score=58.34  Aligned_cols=32  Identities=31%  Similarity=0.643  Sum_probs=23.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          456 HCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       456 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      |+.||..||++||.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            66777777777777777777777777777766

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.80  E-value=0.00012  Score=67.51  Aligned_cols=378  Identities=11%  Similarity=0.082  Sum_probs=230.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      +.+..+++.+..+ .++++.+.++.+...  ++-....|..-|..-....+++....+|.+.+..  ..+...|...+.-
T Consensus        21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~Y   95 (656)
T KOG1914|consen   21 DSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSY   95 (656)
T ss_pred             HHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHH
Confidence            4445566666555 999999999999876  5667779999999999999999999999998876  4567777766653


Q ss_pred             HHh-CCCHH----HHHHHHHHhhcCCCCCC-CHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          189 YCR-NSLID----EAFVTLNQMKTLPNCQP-DVYTYSTLIKAC---------VDAMRFELIETLYQDMDERSVTPNTVTQ  253 (502)
Q Consensus       189 ~~~-~g~~~----~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~  253 (502)
                      -.+ .|+..    ...+-|+-....-|+.+ +-..|+..+..+         ....+++...++|+++...-+.-=...|
T Consensus        96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW  175 (656)
T KOG1914|consen   96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW  175 (656)
T ss_pred             HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence            332 23322    22333443333223333 233455555443         3344667788888888764222111222


Q ss_pred             HHH------HHH-------HhccCChHHHHHHHHHHHHc-CCC-------CCC--------HHHHHHHHH----------
Q 010740          254 NIV------LGG-------YGKAGMFDQMERVLSGMLES-ATC-------KPD--------VWTMNTILS----------  294 (502)
Q Consensus       254 ~~l------~~~-------~~~~g~~~~a~~~~~~~~~~-~~~-------~~~--------~~~~~~l~~----------  294 (502)
                      +..      |+.       --+...+..|.++++++..- .|.       +|.        ...|..+|.          
T Consensus       176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~  255 (656)
T KOG1914|consen  176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL  255 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence            211      110       01122344455554444210 011       000        001111111          


Q ss_pred             ---------------------------------------HHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010740          295 ---------------------------------------VFANKGQ-------VDMMERWYEKFRNFGIDPETRTFNILI  328 (502)
Q Consensus       295 ---------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~  328 (502)
                                                             .+...|+       .+++..+++.....-..-+..+|..+.
T Consensus       256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a  335 (656)
T KOG1914|consen  256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA  335 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   1111121       233444444433321122222222222


Q ss_pred             HHHH---ccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 010740          329 GAYG---KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANA  404 (502)
Q Consensus       329 ~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~  404 (502)
                      ..--   .-...+....+++++......--..+|..++....+..-++.|..+|.+..+.+..+ +....++++.-+| .
T Consensus       336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s  414 (656)
T KOG1914|consen  336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S  414 (656)
T ss_pred             hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence            1111   111245555666666555444345678888888888889999999999999988777 6667777777665 5


Q ss_pred             CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHH
Q 010740          405 GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD--SETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       405 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      ++.+-|.++|+.-++. +..+.......++.+...++-..+..+|++....++.||  ...|..++..-..-|+...+++
T Consensus       415 kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~  493 (656)
T KOG1914|consen  415 KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK  493 (656)
T ss_pred             CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence            7789999999877664 344555556788888899999999999999999866655  4689999999999999999999


Q ss_pred             HHHHHHHhhhh
Q 010740          483 LEQEKLQMLLE  493 (502)
Q Consensus       483 ~~~~~~~~~~~  493 (502)
                      +-+++....+.
T Consensus       494 lekR~~~af~~  504 (656)
T KOG1914|consen  494 LEKRRFTAFPA  504 (656)
T ss_pred             HHHHHHHhcch
Confidence            99998877663

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.80  E-value=1.3e-06  Score=72.99  Aligned_cols=148  Identities=10%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 010740          293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA  372 (502)
Q Consensus       293 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  372 (502)
                      +..|...|+++.+....+.+..    +.        ..+...++.+++...+....+.+.. +...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence            3556677777766444322211    10        0222355566666666666666554 667777777777777777


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740          373 KHMEYTFEQMHAEGMKADTKTFCCLINGY-ANAGL--FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVY  449 (502)
Q Consensus       373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  449 (502)
                      ++|...|++..+.. +-+...+..+..++ ...|+  .++|.+++++..+.+ +.+...+..+...+.+.|++++|+..|
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777776653 22445555555543 45555  467777777777654 445666666777777777777777777


Q ss_pred             HHHHHC
Q 010740          450 KRMKEK  455 (502)
Q Consensus       450 ~~~~~~  455 (502)
                      +++.+.
T Consensus       168 ~~aL~l  173 (198)
T PRK10370        168 QKVLDL  173 (198)
T ss_pred             HHHHhh
Confidence            777665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.76  E-value=2.8e-06  Score=74.13  Aligned_cols=189  Identities=12%  Similarity=0.010  Sum_probs=131.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--H
Q 010740          283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET---RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS--S  357 (502)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~  357 (502)
                      ......+..+...+...|++++|...|+++.... +.+.   ..+..+..++.+.|++++|...++.+.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456778888888999999999999999988743 2222   46677888899999999999999999887554222  2


Q ss_pred             HHHHHHHHHHhc--------CCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740          358 TYNNVIEAFSDM--------GDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF  428 (502)
Q Consensus       358 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  428 (502)
                      .+..+..++...        |+.+.|.+.|+.+.+.  .|+.. .+..+.....    ....      .        ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHH
Confidence            455555555544        6788888888888875  34432 2222111100    0000      0        011


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          429 YNAVISACIKADDLMEMERVYKRMKEKHC-RP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ...+...+.+.|++++|+..++...+... .| ....+..+..++.+.|++++|...++......+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            12466778899999999999999987632 12 356888999999999999999999988776654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.75  E-value=2.6e-05  Score=76.76  Aligned_cols=157  Identities=9%  Similarity=-0.034  Sum_probs=113.4

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCC
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP--TPELYTALLAAYCRNS  193 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g  193 (502)
                      .-|..--+..+|.+.|+.+.+.+  ..+........+.|+...+++.|..+.-..-+.. +.  -...|....-.|.+.+
T Consensus       500 ~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~  576 (1238)
T KOG1127|consen  500 QIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAH  576 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCcc
Confidence            33444457889999999998875  5677789999999999999999999844433321 11  1123344555677788


Q ss_pred             CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740          194 LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL  273 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~  273 (502)
                      +...|+..|+...+..  +-|...|..++.+|.+.|++..|.++|.+....... +...-.-..-.-+..|.+.+|+..+
T Consensus       577 n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l  653 (1238)
T KOG1127|consen  577 NLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDAL  653 (1238)
T ss_pred             chhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            8999999999888743  678888999999999999999999999887765221 2222223334456788888888888


Q ss_pred             HHHHH
Q 010740          274 SGMLE  278 (502)
Q Consensus       274 ~~~~~  278 (502)
                      ..++.
T Consensus       654 ~~ii~  658 (1238)
T KOG1127|consen  654 GLIIY  658 (1238)
T ss_pred             HHHHH
Confidence            77654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.73  E-value=1.3e-05  Score=76.14  Aligned_cols=175  Identities=18%  Similarity=0.307  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      +.+...+.+.....+|.+|+.+++.+..+.   .-..-|..+.+.|+..|+++.|.++|-+.-         .++..|..
T Consensus       733 ~~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~m  800 (1636)
T KOG3616|consen  733 NCLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDM  800 (1636)
T ss_pred             hhHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHH
Confidence            344455666677788889999988887753   234467788899999999999999986542         35667889


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      |.+.|+++.|.++-++...   -......|-.-..-+-+.|++.+|+++|-.+-.    |+     ..|.+|-+.|..++
T Consensus       801 y~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~dd  868 (1636)
T KOG3616|consen  801 YGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDD  868 (1636)
T ss_pred             HhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchH
Confidence            9999999999999887753   245556676666677788888888877644321    22     34566777777777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK  311 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (502)
                      .+++..+--.    ..-..|...+..-+-..|+...|..-|-+
T Consensus       869 mirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  869 MIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             HHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence            7766654411    11123344455555556666666555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3e-05  Score=64.81  Aligned_cols=138  Identities=19%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---
Q 010740          257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK---  333 (502)
Q Consensus       257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  333 (502)
                      ...|+..|++++|++..... .      +......-+..+.+..+++-|.+.+++|.+.   .+..|.+.|..++.+   
T Consensus       115 a~i~~~~~~~deAl~~~~~~-~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG-E------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc-c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence            33455556666665555442 1      2222222233344555555555555555542   233444444444332   


Q ss_pred             -cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740          334 -KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL  406 (502)
Q Consensus       334 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  406 (502)
                       .+.+.+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++....... -++.++..++..-...|.
T Consensus       185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGK  256 (299)
T ss_pred             cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCC
Confidence             33455555555555543 223555555555555555555555555555554432 234444444444444443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.72  E-value=8.4e-06  Score=71.12  Aligned_cols=60  Identities=8%  Similarity=0.025  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .+...+...|++++|...++.+.+..  .+.....+..+..++.+.|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556777777888877777776642  1223456777777888888888888877777654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.71  E-value=8.9e-06  Score=67.89  Aligned_cols=164  Identities=18%  Similarity=0.091  Sum_probs=126.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      |... ..+-..+...|+-+....+....... .+.+.......+...++.|++..|+..|++....  -++|..+|+.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHH
Confidence            4444 66677777788877777777765432 2456667777888888999999999999988874  478888999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV  302 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (502)
                      -+|.+.|++++|..-|.+..+.-.. +....+.+.-.|.-.|+.+.|..++.......  .-|...-..+.......|++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCCh
Confidence            9999999999999988888876333 56677888888888899999999888875532  33677777788888888999


Q ss_pred             HHHHHHHHHHH
Q 010740          303 DMMERWYEKFR  313 (502)
Q Consensus       303 ~~a~~~~~~~~  313 (502)
                      ++|.++...-.
T Consensus       219 ~~A~~i~~~e~  229 (257)
T COG5010         219 REAEDIAVQEL  229 (257)
T ss_pred             HHHHhhccccc
Confidence            88888876544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.70  E-value=4.4e-07  Score=71.75  Aligned_cols=94  Identities=10%  Similarity=-0.070  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK  438 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  438 (502)
                      +..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.+.... +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            3334444445555555555555544432 2233444445555555555555555555554432 3344444445555555


Q ss_pred             cCCHHHHHHHHHHHHH
Q 010740          439 ADDLMEMERVYKRMKE  454 (502)
Q Consensus       439 ~g~~~~a~~~~~~~~~  454 (502)
                      .|++++|+..|+...+
T Consensus       105 ~g~~~eAi~~~~~Al~  120 (144)
T PRK15359        105 MGEPGLAREAFQTAIK  120 (144)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=9.7e-06  Score=67.70  Aligned_cols=157  Identities=15%  Similarity=0.015  Sum_probs=88.6

Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 010740          254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGK  333 (502)
Q Consensus       254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  333 (502)
                      ..+-..+...|+-+....+.......  ...+.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            44455555566666655555554321  12233444445666666666666666666665533 5666666666666666


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010740          334 KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISS  413 (502)
Q Consensus       334 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  413 (502)
                      .|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence            66666666666666665444 55555566656666666666666666555543 22444455555555556666666555


Q ss_pred             HH
Q 010740          414 VR  415 (502)
Q Consensus       414 ~~  415 (502)
                      ..
T Consensus       225 ~~  226 (257)
T COG5010         225 AV  226 (257)
T ss_pred             cc
Confidence            43

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.69  E-value=2e-05  Score=79.22  Aligned_cols=239  Identities=9%  Similarity=0.096  Sum_probs=144.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP-ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS  219 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (502)
                      +.+...+..|+..+...+++++|.++.+...+.  .|+. ..|-.+...+.+.++.+++..+                  
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------   87 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------   87 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence            334557778888888888888888888866655  3433 3333333455555654444433                  


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740          220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (502)
                      .++.......++..+..+...|.+.+  -+...+..+..+|-+.|+.++|..+++++++-.  .-|..+.|.+...|...
T Consensus        88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720         88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE  163 (906)
T ss_pred             hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh
Confidence            22333333334444444444444432  244467777778888888888888888877653  44667777777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 010740          300 GQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTF  379 (502)
Q Consensus       300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  379 (502)
                       ++++|.+++.+.+..               |...+++..+.+++.++...... +...+-.                +.
T Consensus       164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~----------------i~  210 (906)
T PRK14720        164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLR----------------IE  210 (906)
T ss_pred             -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHH----------------HH
Confidence             788887777776643               55556777777777777766433 2222222                22


Q ss_pred             HHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          380 EQMHAE-GMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       380 ~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      +.+... |..--..++..+-..|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus       211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            222221 112223455556667777778888888888888765 445666666666665

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.65  E-value=3.6e-05  Score=77.43  Aligned_cols=220  Identities=9%  Similarity=0.060  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL  186 (502)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  186 (502)
                      ....+..++..+...+++++|.++.+...+..  +-....|..+...+.+.++.+.+..+  .               ++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N---------------LI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence            34667778888889999999999999777753  33344555555577778876665555  2               23


Q ss_pred             HHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740          187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      .......++.-...+...|...   ..+...+..+..+|-+.|+.+++..+|+++.+... -|..+.|.+...|... +.
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hH
Confidence            3333444443333333444432   34455677778888888888888888888887763 3777778888877777 88


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHH
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-------------------IDPETRTFNIL  327 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l  327 (502)
                      ++|++++.+.++.                +...+++.++.++|.++....                   ...-..++-.+
T Consensus       166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence            8888877777653                344445555555555555432                   12223334444


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740          328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS  367 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  367 (502)
                      -..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            45555556666666666666665444 4444555555443

>PF12854 PPR_1: PPR repeat

Probab=98.65  E-value=6.2e-08  Score=54.36  Aligned_cols=31  Identities=35%  Similarity=0.739  Sum_probs=13.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740          175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQM  205 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  205 (502)
                      +.||..+|+.||.+|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3444444444444444444444444444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=1.5e-05  Score=76.71  Aligned_cols=151  Identities=15%  Similarity=0.158  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCC--------
Q 010740          142 PKEGTYMKLLV--LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNC--------  211 (502)
Q Consensus       142 ~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------  211 (502)
                      -|..+-..+++  .|..-|+.+.|.+-.+-++      +..+|..|.+.|.+.++++-|.-.+-.|....|.        
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            35566666664  5678899999988877665      4578999999999999998887777666433221        


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010740          212 QPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT  291 (502)
Q Consensus       212 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  291 (502)
                      .++ .+=....-.....|.+++|+.+|.+-++.         ..|=+.|...|++++|.++-+.- .+   ..=..||..
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~-DR---iHLr~Tyy~  863 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK-DR---IHLRNTYYN  863 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-cc---eehhhhHHH
Confidence            121 22222333346778999999999987653         45556788899999999987643 21   112345666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 010740          292 ILSVFANKGQVDMMERWYEKF  312 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~  312 (502)
                      -...+...+|.+.|++.|++.
T Consensus       864 yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhc
Confidence            667777788899999888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=4.4e-05  Score=63.83  Aligned_cols=251  Identities=12%  Similarity=0.044  Sum_probs=162.9

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ++.+.-.|+|..++..-......   +.+...-..+.++|...|++.....   +.+... .|.......+......-++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~   87 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESN   87 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcch
Confidence            34445568888888777665543   2345555566677777777654332   222222 3444444444444444455


Q ss_pred             HHHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740          195 IDEAFV-TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVL  273 (502)
Q Consensus       195 ~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~  273 (502)
                      .++-+. +.+.+... ....+......-...|++.+++++|++......      +....-.=+..+.+..+++-|.+.+
T Consensus        88 ~~~~~~~l~E~~a~~-~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l  160 (299)
T KOG3081|consen   88 KKSILASLYELVADS-TDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL  160 (299)
T ss_pred             hHHHHHHHHHHHHhh-ccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443 33444332 223333333444556888999999999887622      3333333345567788899999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          274 SGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      ++|.+.    .+..+.+.|..++.+    .+.+.+|.-+|++|-+. .+|+..+.+-...++...|++++|..+++....
T Consensus       161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999653    356677767766654    45788999999999863 589999999999999999999999999999998


Q ss_pred             cCCCCChHHHHHHHHHHHhcCCH-hHHHHHHHHHHHc
Q 010740          350 LQFPWTSSTYNNVIEAFSDMGDA-KHMEYTFEQMHAE  385 (502)
Q Consensus       350 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~  385 (502)
                      .... ++.+...++.+-...|.. +...+.+.+++..
T Consensus       236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            8776 677777777666666654 3445556666554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.61  E-value=2.3e-05  Score=77.95  Aligned_cols=147  Identities=10%  Similarity=0.027  Sum_probs=119.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740          140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS  219 (502)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (502)
                      ++.+...+-.|..+....|++++|..+++...+.. +-+......+...+.+.+++++|+..+++....  -+.+.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            46678899999999999999999999999998874 445667788889999999999999999998874  256677788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010740          220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTI  292 (502)
Q Consensus       220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  292 (502)
                      .+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+..++..  .+....|+..
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~  228 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHH
Confidence            88888999999999999999998843 3367888889999999999999999999987653  3344444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.61  E-value=7.6e-06  Score=64.67  Aligned_cols=103  Identities=8%  Similarity=-0.053  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +..+...+...|++++|...++.+.... +.+...|..+..++...|++++|+..|++....+. .+...+..+..++.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence            4445556666666666666666666553 44566666666666666666666666666665432 255566666666666


Q ss_pred             cCCcHHHHHHHHHHHHhhhhccccc
Q 010740          474 EGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      .|+.++|++.|+++++..|++.+.|
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHH
Confidence            6666666666666666665554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.60  E-value=5.8e-06  Score=69.17  Aligned_cols=120  Identities=12%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 010740          157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC-VDAMR--FEL  233 (502)
Q Consensus       157 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~  233 (502)
                      .++.+++...++..++.. +.+...|..+...|...|++++|...|++..+..  +.+...+..+..++ ...|+  .++
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            566677777777766654 5677778888888888888888888888877753  45666777777654 55565  478


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 010740          234 IETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA  280 (502)
Q Consensus       234 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  280 (502)
                      |.+++++..+.+.. +...+..+...+...|++++|...|+++++..
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            88888888777544 66777777777888888888888888877653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=6e-05  Score=75.03  Aligned_cols=181  Identities=6%  Similarity=0.047  Sum_probs=132.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH
Q 010740          283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV  362 (502)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  362 (502)
                      ..+...+..|.......|.+++|..+++.+.+.. +-+......+...+.+.+++++|+..++........ +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            4467888888888999999999999999988754 555667788888889999999999999988888766 77788888


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740          363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL  442 (502)
Q Consensus       363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  442 (502)
                      ..++.+.|++++|.++|+++...+ .-+..++..+..++...|+.++|...|+...+.. .+...-|+.++      +++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~  232 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL  232 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence            888899999999999999998742 2346788888888999999999999998888763 44555555544      233


Q ss_pred             HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHh
Q 010740          443 MEMERVYKRMKEKH----CRPDSETFSIMTEAYAK  473 (502)
Q Consensus       443 ~~a~~~~~~~~~~g----~~p~~~~~~~l~~~~~~  473 (502)
                      ..-..+++++.-.+    ..........++.-|.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (694)
T PRK15179        233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR  267 (694)
T ss_pred             HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence            34444555554332    22233344555554543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.58  E-value=0.0006  Score=63.05  Aligned_cols=338  Identities=10%  Similarity=0.082  Sum_probs=201.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      +-|..+|..||+-+..+ -.+++++.++++... ++-....|..-|..-....+++....+|.+....   ..+...|..
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW~l   91 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLWKL   91 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHHHH
Confidence            66889999999988877 999999999999865 3556789999999999999999999999998763   466777877


Q ss_pred             HHHHHHhc-CCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---hccCChH------HHHHHHHHHHHcCCCCC
Q 010740          221 LIKACVDA-MRFEL----IETLYQDMD-ERSVTPN-TVTQNIVLGGY---GKAGMFD------QMERVLSGMLESATCKP  284 (502)
Q Consensus       221 ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~-~~~~~~l~~~~---~~~g~~~------~a~~~~~~~~~~~~~~~  284 (502)
                      .++--.+. ++...    ..+.|+-.. +.|+.+- -..|+..+..+   -..|.++      ...+++++++.    .|
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~----tP  167 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV----TP  167 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc----Cc
Confidence            77654443 33322    333344433 4554332 23455555433   3356554      45566666654    33


Q ss_pred             --C-------HHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHH--
Q 010740          285 --D-------VWTMNTILSVF-------ANKGQVDMMERWYEKFRN--FGIDPETR---------------TFNILIG--  329 (502)
Q Consensus       285 --~-------~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~--  329 (502)
                        +       -..|..=|+..       -+...+..|.++++++..  .|......               .|-.+|.  
T Consensus       168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE  247 (656)
T KOG1914|consen  168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE  247 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence              1       11222112111       122344556666655542  12111100               0111111  


Q ss_pred             --------------------------HH---------------------HccCc-------HHHHHHHHHHHHHcCCCCC
Q 010740          330 --------------------------AY---------------------GKKRM-------YDKMSSVMEYMRKLQFPWT  355 (502)
Q Consensus       330 --------------------------~~---------------------~~~g~-------~~~a~~~~~~~~~~~~~~~  355 (502)
                                                .+                     ...|+       .+++..+++.....-...+
T Consensus       248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~  327 (656)
T KOG1914|consen  248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN  327 (656)
T ss_pred             hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence                                      10                     01111       2233333333322211112


Q ss_pred             hHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChHHHH
Q 010740          356 SSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEG-MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAE-NVSFYN  430 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~  430 (502)
                      ..+|..+...--..-   ..+.....++++...- +.|+ .+|..+++.-.+..-++.|..+|.++.+.+..+ .+.+++
T Consensus       328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~  406 (656)
T KOG1914|consen  328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA  406 (656)
T ss_pred             HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence            222222222111111   2444555566655432 3333 457778888888888999999999999887666 788888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      +++..|| .++.+-|.++|+.-... +.-++..-...+..+...|+-..|..+|++.+..
T Consensus       407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            8888776 57889999999976664 3335555567788888889888888888888776

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.56  E-value=0.0011  Score=65.10  Aligned_cols=193  Identities=16%  Similarity=0.149  Sum_probs=124.3

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +.+.|+.++|..+++.....+  ..|..+...+-.+|...|+.++|..+|++....  .|+......+..+|++.+.+.+
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence            457899999998888877664  347788999999999999999999999998865  5778888888888888888766


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCh
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR----------FELIETLYQDMDERS-VTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      -.+.--++-+  .++-+...+-.+++.+.....          ...|.+.++.+.+.+ -.-+..-.......+...|++
T Consensus       129 qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~  206 (932)
T KOG2053|consen  129 QQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY  206 (932)
T ss_pred             HHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence            4444333333  224445555555555543211          234666777776654 222222223333445567888


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG  316 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (502)
                      ++|.+++..-....-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus       207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            89988884332222223344444455666667777777777776666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=7.3e-05  Score=68.17  Aligned_cols=113  Identities=11%  Similarity=-0.004  Sum_probs=65.7

Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a  410 (502)
                      ...|++++|+..+..+.+..+. |+..+......+...++.++|.+.++++...  .|+ ......+..++.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            3446666666666665555433 5555555556666666666666666666654  344 34445555666666666666


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740          411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV  448 (502)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  448 (502)
                      +.+++...... +.+...|..|..+|...|+..++...
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH
Confidence            66666555542 55566666666666666665555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=0.00081  Score=61.61  Aligned_cols=113  Identities=11%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             HhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCcHH
Q 010740          260 YGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE-TRTFNILIGAYGKKRMYD  338 (502)
Q Consensus       260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  338 (502)
                      +...|++++|+..++.++..  .+-|...+......+.+.++.++|.+.++++...  .|+ ....-.+.++|.+.|+..
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            34445555555555555443  1233444444455555555555555555555543  222 333444445555555555


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHH
Q 010740          339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY  377 (502)
Q Consensus       339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  377 (502)
                      +|..+++........ |+..|..|..+|...|+..++..
T Consensus       392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence            555555555444333 55555555555555555544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.49  E-value=5e-06  Score=65.41  Aligned_cols=99  Identities=11%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      ...+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            3444455555556666666555555543 3345555555555555666666666666555542 2244555555555566


Q ss_pred             cCCcHHHHHHHHHHHHhhhhc
Q 010740          474 EGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .|++++|+..++++++..+.+
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGEN  118 (135)
T ss_pred             cCCHHHHHHHHHHHHHhcccc
Confidence            666666666666665555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.00028  Score=58.76  Aligned_cols=189  Identities=10%  Similarity=0.064  Sum_probs=123.1

Q ss_pred             hhcHHHHHHHHHHHHhC---CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740          121 KKQWFQALQVFEMLKEQ---PFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID  196 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~---~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  196 (502)
                      .++.++.++++..+...   |...++.. .|..++-+....|+.+.|...++++..+- +-+..+-..-.-.+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            46777888887766432   11334444 56677777778888888888888877653 334444333333445568888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +|+++|+.+.+.+  +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus       104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            8888888888753  667777776666666677777777777777665 4557888888888888888888888888877


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 010740          277 LESATCKPDVWTMNTILSVFANKG---QVDMMERWYEKFRNF  315 (502)
Q Consensus       277 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~  315 (502)
                      +-..  +.+...+..+...+.-.|   +.+.+.++|.+.++.
T Consensus       181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6532  223334444444443333   445666667666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=0.00039  Score=57.94  Aligned_cols=189  Identities=14%  Similarity=0.067  Sum_probs=135.5

Q ss_pred             CChHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740          158 GQPELARKVFNEMVEE---G-IEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE  232 (502)
Q Consensus       158 g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  232 (502)
                      .+.++..+++..+...   | ..++.. .|..++-+....|+.+.|...++++...  ++-+...-..-...+-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence            4566677777666543   3 345543 4566777888899999999999998763  3333333222233345678999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740          233 LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF  312 (502)
Q Consensus       233 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (502)
                      +|+++|+.+.+.+ +.|..++-.=+...-..|+--+|++-+...++.  +..|...|.-+...|...|++++|.-.++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999886 336667766666666677777888888888775  4678999999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHcc---CcHHHHHHHHHHHHHcCC
Q 010740          313 RNFGIDPETRTFNILIGAYGKK---RMYDKMSSVMEYMRKLQF  352 (502)
Q Consensus       313 ~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~  352 (502)
                      .-.. |.+...+..+...+.-.   .+.+.+.++|....+...
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            8654 55555666666655443   356678888888877644

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.42  E-value=1.6e-05  Score=62.41  Aligned_cols=99  Identities=15%  Similarity=0.014  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      +......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++..+..  +.+...+..+.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la   92 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAA   92 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence            33445555566666666666666666665543 3455666666666666666666666666665532  44455555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC
Q 010740          223 KACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      .++...|+++.|.+.|+...+.
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666665554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.24  E-value=8.6e-05  Score=58.96  Aligned_cols=126  Identities=13%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVIS  434 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~  434 (502)
                      |..++..+ ..++...+...++.+......-.  ....-.+...+...|++++|...|+.+......++  ....-.|..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444444 36777777777777776532111  12333455667778888888888888777652222  123344667


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      .+...|++++|+..++......  .....+.....+|.+.|++++|...|+++
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7788888888888887654332  24556667788888888888888888775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=5.6e-05  Score=69.49  Aligned_cols=126  Identities=13%  Similarity=0.078  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      ....|+..+...++++.|..+|+++.+..  |+.  ...+++.+...++-.+|.+++.+..+.. +.+...+......|.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            33445555556677777777777777653  443  3346666666777777777777776542 445666666677777


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          438 KADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      +.++++.|+++.+++.+.  .| +..+|..|..+|.+.|++++|+..++-+.-.
T Consensus       246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            888888888888888774  34 4557888888888888888888777766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.21  E-value=6.6e-05  Score=69.05  Aligned_cols=121  Identities=12%  Similarity=0.084  Sum_probs=59.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740          183 TALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK  262 (502)
Q Consensus       183 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  262 (502)
                      ..|+..+...++++.|+++|+++.+.   .|+.  ...++..+...++-.+|.+++.+..+.. +-+......-...+.+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            34444444455555555555555543   2332  2234444445555555555555555432 2244444444455555


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740          263 AGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMMERWYEKF  312 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (502)
                      .++++.|+++.+++.+.   .| +..+|..|..+|...|+++.|+..++.+
T Consensus       247 k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            55555555555555442   23 2335555555555555555555555544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.19  E-value=0.00034  Score=55.57  Aligned_cols=125  Identities=14%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT--PELYTAL  185 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l  185 (502)
                      +..++..+ ..+++..+...++.+.+..  +.+   ....-.+...+...|++++|...|+........++  ....-.+
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            33333333 4778888888888777753  333   22334455777788888888888888887642222  1234456


Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDM  241 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  241 (502)
                      ...+...|++++|+..++.....   ......+....+++...|++++|...|+..
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77778888888888888765432   344556667777888888888888887653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.18  E-value=3.9e-06  Score=47.90  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPD  460 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~  460 (502)
                      +|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.16  E-value=4.3e-06  Score=47.34  Aligned_cols=33  Identities=36%  Similarity=0.622  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRP  459 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p  459 (502)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777787777777766

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.14  E-value=0.011  Score=58.42  Aligned_cols=230  Identities=13%  Similarity=0.056  Sum_probs=154.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLV--LLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      |-.....+++.+|++....+.++   .|+. .|...+.  .+.+.|+.++|..+++.....+. -|..+...+-.+|.+.
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDL   90 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHH
Confidence            33455679999999999988876   3442 3333333  34688999999999988876653 3888999999999999


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--------
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG--------  264 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--------  264 (502)
                      ++.++|..+|++....   .|+......+..+|.+.+++.+-.+.--+|.+. ++-+...+=.++..+...-        
T Consensus        91 ~~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen   91 GKLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             hhhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence            9999999999999864   477888888889999988886644444444332 3334444445555444321        


Q ss_pred             --ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740          265 --MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY-EKFRNFGIDPETRTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       265 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  341 (502)
                        -..-|.+.++.+++..|-.-+..-...-...+...|++++|.+++ ....+.-...+...-+.-+..+...+++.+..
T Consensus       167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~  246 (932)
T KOG2053|consen  167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF  246 (932)
T ss_pred             chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence              123466667777666542222222333334455677888888888 34443333444455556677777888888888


Q ss_pred             HHHHHHHHcCCC
Q 010740          342 SVMEYMRKLQFP  353 (502)
Q Consensus       342 ~~~~~~~~~~~~  353 (502)
                      ++-.++...+..
T Consensus       247 ~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  247 ELSSRLLEKGND  258 (932)
T ss_pred             HHHHHHHHhCCc
Confidence            888888777654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.07  E-value=7.9e-05  Score=54.12  Aligned_cols=95  Identities=19%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740          395 CCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE  474 (502)
Q Consensus       395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  474 (502)
                      ..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence            344555555666666666666665542 23335555566666666667777766666665432 2334566666666666


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 010740          475 GMNDKVYALEQEKLQML  491 (502)
Q Consensus       475 g~~~~A~~~~~~~~~~~  491 (502)
                      |++++|...+++..+..
T Consensus        82 ~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          82 GKYEEALEAYEKALELD   98 (100)
T ss_pred             HhHHHHHHHHHHHHccC
Confidence            77777777666665543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.06  E-value=8e-06  Score=46.58  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD  390 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~  390 (502)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.06  E-value=0.00017  Score=55.12  Aligned_cols=100  Identities=10%  Similarity=0.006  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQI--AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR--PDSETFSIMTE  469 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~~  469 (502)
                      +..++..+...|++++|.+.+..+.+..-  +.....+..+..++.+.|++++|...|+.+......  .....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            34444445555555555555555544320  001233444555555555555555555555543211  11334455555


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          470 AYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ++.+.|+.++|.+.++++++..|.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcC
Confidence            555555555555555555555444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.04  E-value=0.00015  Score=67.04  Aligned_cols=122  Identities=12%  Similarity=0.080  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740          283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNF--GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYN  360 (502)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  360 (502)
                      ..+......++..+....+.+++..++.+.+..  ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            446677777888888888888888888888764  222223455688888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010740          361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA  404 (502)
Q Consensus       361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  404 (502)
                      .|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888888776666666666666655554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.03  E-value=1.1e-05  Score=45.62  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA  389 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p  389 (502)
                      +|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.00  E-value=0.00022  Score=63.49  Aligned_cols=132  Identities=10%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                      +|..++....+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|.++|+...+. ++.+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34444444444444555555555554321 1122223222222 11233444455555555443 344455555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          437 IKADDLMEMERVYKRMKEKHCRPDS---ETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      .+.|+.+.|..+|++.... +.++.   ..|...++.-.+.|+.+.+.++.+++.+..+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            5555555555555555543 22111   2555555555555555555555555555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.98  E-value=0.00014  Score=67.30  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=96.1

Q ss_pred             CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 010740          315 FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ--FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTK  392 (502)
Q Consensus       315 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  392 (502)
                      .+.+.+......+++.+....+.+.+..++.......  ...-..|..++++.|...|..+.++++++.=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            3456677778888888888888888888888777652  22233455688888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA  439 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  439 (502)
                      +++.||..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888888777776666666666666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.98  E-value=0.013  Score=53.43  Aligned_cols=145  Identities=9%  Similarity=0.066  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740          127 ALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMK  206 (502)
Q Consensus       127 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  206 (502)
                      -+++=+.+++.   +.|..+|-.|+..+..+|..++.++++++|..- ++-=..+|...+++-....++.....+|.+..
T Consensus        28 ~lrLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL  103 (660)
T COG5107          28 ELRLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL  103 (660)
T ss_pred             HHHHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence            34666677664   668889999999999999999999999999743 34446788888888888899999999999988


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHh-CCCCCC-HHHHHHHHHHH---hccCCh------HHH
Q 010740          207 TLPNCQPDVYTYSTLIKACVDAMRF------ELIETLYQDMDE-RSVTPN-TVTQNIVLGGY---GKAGMF------DQM  269 (502)
Q Consensus       207 ~~~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~g~~------~~a  269 (502)
                      ..   ..+...|...+.-..+.+..      ....+.|+-... .++.|- ...|+..+..+   -..|.+      +..
T Consensus       104 ~k---~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i  180 (660)
T COG5107         104 KK---SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI  180 (660)
T ss_pred             hh---hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence            74   45677787777665554422      122333444333 344443 33455444433   334444      455


Q ss_pred             HHHHHHHHH
Q 010740          270 ERVLSGMLE  278 (502)
Q Consensus       270 ~~~~~~~~~  278 (502)
                      .+.+.+++.
T Consensus       181 R~~Y~ral~  189 (660)
T COG5107         181 RNGYMRALQ  189 (660)
T ss_pred             HHHHHHHHc
Confidence            566666654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.0037  Score=56.10  Aligned_cols=351  Identities=10%  Similarity=0.000  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      +.....-..+....+|..|+..+..+.+..  +.++.-|..-+..+...|++++|.--.+.-++.. +-....+...-++
T Consensus        50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c  126 (486)
T KOG0550|consen   50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC  126 (486)
T ss_pred             HHHHhhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence            333344455666667777777777766653  4445556666666666666666665554444331 1112233334444


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHhccCCh
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-TPNTVTQNIV-LGGYGKAGMF  266 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l-~~~~~~~g~~  266 (502)
                      +...++..+|.+.++.          ...+           ....++..++.+..... +|...++..+ ..++.-.|++
T Consensus       127 ~~a~~~~i~A~~~~~~----------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~  185 (486)
T KOG0550|consen  127 HLALSDLIEAEEKLKS----------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY  185 (486)
T ss_pred             hhhhHHHHHHHHHhhh----------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence            4444444444444431          1111           11122222222222211 2333444433 3456778999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHH----------HHHHHc
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTF---NIL----------IGAYGK  333 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l----------~~~~~~  333 (502)
                      ++|.++--.+++..  ..+......-..++.-.++.+.+...|++.+..+  |+...-   ...          .+-..+
T Consensus       186 ~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  186 DEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             hhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            99998887776532  1222333333344556788999999999888653  443322   111          223456


Q ss_pred             cCcHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHH
Q 010740          334 KRMYDKMSSVMEYMRKLQ---FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHK  409 (502)
Q Consensus       334 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~  409 (502)
                      .|++..|.+.+.+.+...   ..++...|.....+..+.|+..+|+.--++....  .+.. ..|..-..++...++|++
T Consensus       262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999887764   3456677888888888999999999888877753  2211 233333455667788999


Q ss_pred             HHHHHHHHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcHHHHHHHH
Q 010740          410 VISSVRLASKLQIAE-NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA---KEGMNDKVYALEQ  485 (502)
Q Consensus       410 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~  485 (502)
                      |.+.++...+....+ ...++.....++-+..+.+ =.+++--.+.....|....|..+.-.+.   ..|.-.+|...|+
T Consensus       340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFk  418 (486)
T KOG0550|consen  340 AVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFK  418 (486)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHH
Confidence            999998887764332 2233333333333322222 1223333333333455666765544432   3455577777777


Q ss_pred             HHHHh
Q 010740          486 EKLQM  490 (502)
Q Consensus       486 ~~~~~  490 (502)
                      ++-..
T Consensus       419 evgeA  423 (486)
T KOG0550|consen  419 EVGEA  423 (486)
T ss_pred             HHHHH
Confidence            76543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.95  E-value=0.00035  Score=54.49  Aligned_cols=95  Identities=7%  Similarity=0.003  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK  438 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  438 (502)
                      .-.+...+...|++++|..+|+-+...+ .-+..-|..|..++-..|++++|+..|..+...+ +.++..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence            3344445556666666666666666543 2234455566666666666666666666666655 4555666666666666


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 010740          439 ADDLMEMERVYKRMKEK  455 (502)
Q Consensus       439 ~g~~~~a~~~~~~~~~~  455 (502)
                      .|+.+.|.+-|+..+..
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            66666666666665543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.94  E-value=0.0006  Score=53.21  Aligned_cols=94  Identities=6%  Similarity=-0.040  Sum_probs=62.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740          184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA  263 (502)
Q Consensus       184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  263 (502)
                      .+...+...|++++|..+|+.+...+  +-+...|-.|..++...|++++|+..|.......+. |...+..+..++...
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l  116 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            34445556677777777777766542  455556666777777777777777777777666543 666666677777777


Q ss_pred             CChHHHHHHHHHHHHcC
Q 010740          264 GMFDQMERVLSGMLESA  280 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~  280 (502)
                      |+.+.|.+-|+..+...
T Consensus       117 G~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        117 DNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            77777777777665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.93  E-value=0.00043  Score=52.82  Aligned_cols=96  Identities=16%  Similarity=0.020  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 010740          112 AETFSDHVLKKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI--EPTPELYTALLAA  188 (502)
Q Consensus       112 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~  188 (502)
                      ......+...|++++|++.|+.+.+...- +.....+..+..++.+.|+++.|...|+.+....-  +....++..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            33444455566666666666665543200 11123455566666666666666666666554320  1113445555555


Q ss_pred             HHhCCCHHHHHHHHHHhhc
Q 010740          189 YCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~  207 (502)
                      +.+.|+.++|...++++.+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHhCChHHHHHHHHHHHH
Confidence            6666666666666666555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=0.00034  Score=64.71  Aligned_cols=91  Identities=13%  Similarity=0.048  Sum_probs=78.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ...+...|++++|++.|+.+.+..  +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            445567899999999999998874  5677788899999999999999999999998875 4567888889999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 010740          195 IDEAFVTLNQMKTL  208 (502)
Q Consensus       195 ~~~a~~~~~~~~~~  208 (502)
                      +++|+..|++..+.
T Consensus        86 ~~eA~~~~~~al~l   99 (356)
T PLN03088         86 YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.93  E-value=0.0081  Score=52.13  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEGTY---MKLLVLLGKSGQPELARKVFNEMVEE  173 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~  173 (502)
                      .+...|++++|++.|+.+....  +-+....   -.++.++.+.++++.|...+++..+.
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            3445666667777666666542  2222222   34455666666666666666666655

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.92  E-value=0.00027  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.160  Sum_probs=8.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHH
Q 010740          149 KLLVLLGKSGQPELARKVFNEM  170 (502)
Q Consensus       149 ~l~~~~~~~g~~~~a~~~~~~~  170 (502)
                      .+...+...|++++|.+.|+..
T Consensus        39 ~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189          39 NLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.89  E-value=0.00026  Score=65.42  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740          362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD  441 (502)
Q Consensus       362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  441 (502)
                      -...+...|++++|+++|+++++.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            3456677899999999999998864 3356778888899999999999999999998875 5577788889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740          442 LMEMERVYKRMKEKHCRPDSETFSIM  467 (502)
Q Consensus       442 ~~~a~~~~~~~~~~g~~p~~~~~~~l  467 (502)
                      +++|+..|++....+  |+......+
T Consensus        86 ~~eA~~~~~~al~l~--P~~~~~~~~  109 (356)
T PLN03088         86 YQTAKAALEKGASLA--PGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            999999999998853  444433333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.88  E-value=0.00032  Score=62.43  Aligned_cols=124  Identities=13%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVL-LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      ++...+.+..+.|..+|..+.+.+  ..+...|...... +...++.+.|.++|+...+. ++.+...|...+..+...|
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~   84 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLN   84 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhC
Confidence            334444444555555555555432  1222333333333 22233444455555555443 2344445555555555555


Q ss_pred             CHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          194 LIDEAFVTLNQMKTLPNCQPDV---YTYSTLIKACVDAMRFELIETLYQDMDE  243 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~  243 (502)
                      +.+.|..+|++....  +..+.   ..|...+..=.+.|+.+.+.++.+++.+
T Consensus        85 d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   85 DINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             -HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555555442  11111   2444444444444555555444444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.86  E-value=4.2e-05  Score=54.10  Aligned_cols=81  Identities=9%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             cCChHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740          404 AGLFHKVISSVRLASKLQIA-ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      .|+++.|+.+++.+.+.... ++...+..+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            45666777777666665321 1334444466777777777777777766 22211 123444455666777777777777


Q ss_pred             HHHH
Q 010740          483 LEQE  486 (502)
Q Consensus       483 ~~~~  486 (502)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.86  E-value=7.8e-05  Score=49.69  Aligned_cols=62  Identities=13%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +...+.+.|++++|++.|+++.+.... +...+..+..++.+.|++++|...|+++++..|.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            455677888888888888888876422 56677788888888888888888888888777654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.85  E-value=0.00034  Score=50.47  Aligned_cols=29  Identities=7%  Similarity=0.313  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          374 HMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                      ..+.+|++|...+++|+..+|+.++..+.
T Consensus        87 ~LLtvYqDiL~~~lKP~~etYnivl~~Ll  115 (120)
T PF08579_consen   87 NLLTVYQDILSNKLKPNDETYNIVLGSLL  115 (120)
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            44555666666666666666666665544

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.83  E-value=3.2e-05  Score=54.71  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=37.1

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740          122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT  201 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  201 (502)
                      |+++.|+.+|+.+.+.....++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            555556666655554421001223334455555555555555555555 2211 11223333345555555555555555


Q ss_pred             HHH
Q 010740          202 LNQ  204 (502)
Q Consensus       202 ~~~  204 (502)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.82  E-value=0.0093  Score=47.47  Aligned_cols=130  Identities=11%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      -|+..--..|..++...|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.+.-..+..+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            34444444555555666666666666665554333445555555555555556666666666555443211112223334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          221 LIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       221 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      +...+...|.++.|+.-|+.....-  |+...-......+.+.|+.+++..-
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence            4555555556555665555555542  2222222222334445544444433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.81  E-value=0.00054  Score=49.46  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHH
Q 010740          112 AETFSDHVLKKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSG--------QPELARKVFNEMVEEGIEPTPELY  182 (502)
Q Consensus       112 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~  182 (502)
                      ...|..+...+++...-.+|+.++..| + .|+..+|+.++.+.++..        ++-..+.+|+.|+..++.|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            345556667799999999999999888 6 889999999998887654        244677888888888888888888


Q ss_pred             HHHHHHHHh
Q 010740          183 TALLAAYCR  191 (502)
Q Consensus       183 ~~l~~~~~~  191 (502)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            888877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.81  E-value=0.0017  Score=53.26  Aligned_cols=91  Identities=12%  Similarity=0.038  Sum_probs=63.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT--PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|+..+++.....  +.+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence            344677777778888888888888888876532221  3567778888888888888888888877642  445666666


Q ss_pred             HHHHHHhcCCHHHHH
Q 010740          221 LIKACVDAMRFELIE  235 (502)
Q Consensus       221 ll~~~~~~~~~~~a~  235 (502)
                      +..++...|+...+.
T Consensus       112 lg~~~~~~g~~~~a~  126 (172)
T PRK02603        112 IAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHcCChHhHh
Confidence            777777766654433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.001  Score=57.19  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      +.+..--..+.+.++|++|+..|..+.+..  +-|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A  158 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence            444444556778899999999999999863  6678888999999999999999999999998764 3446889999999


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      |...|++++|++.|++..+.   .|+-.+|-.=+.
T Consensus       159 ~~~~gk~~~A~~aykKaLel---dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALEL---DPDNESYKSNLK  190 (304)
T ss_pred             HHccCcHHHHHHHHHhhhcc---CCCcHHHHHHHH
Confidence            99999999999999999875   576666644443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.80  E-value=0.0018  Score=53.15  Aligned_cols=62  Identities=13%  Similarity=-0.034  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT--SSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444445555555555555555544322211  23444444555555555555555555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.79  E-value=0.00013  Score=49.32  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=52.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHhhh
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG-MNDKVYALEQEKLQMLL  492 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~  492 (502)
                      +..+|..+...+...|++++|+..|++..+.+.. +...|..+..+|.+.| ++++|++.++++++..|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4566778888888888888888888888886422 5667888888888888 68888888888887654

...

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.79  E-value=3.6e-05  Score=42.35  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            46666666666666666666666666654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.047  Score=53.18  Aligned_cols=330  Identities=12%  Similarity=0.110  Sum_probs=180.5

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh--HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP--ELAR-KVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      ++..++..+.|..|+++-.++...-  .-+...|.....-+.+..+.  +++. .+-+++.. .. -...+|..+.+-..
T Consensus       443 vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  443 VIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRAY  518 (829)
T ss_pred             hhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHHH
Confidence            4556677788888888888876432  11245666666666666432  2233 33333322 12 34556777777777


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQ---PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      ..|+.+-|..+++.=.....-.   .+..-+...+.-+.+.|+.+....++-.+...-   +...+...      ..+.-
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p  589 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQP  589 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhch
Confidence            8888888888776432211000   122234455666667777777777766665531   11222221      12344


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHHccCc-----
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYE--KFR----NFGIDPETRTFNILIGAYGKKRM-----  336 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~l~~~~~~~g~-----  336 (502)
                      .|..+|.+..++.+-.    +   +-..| +.++-.++..-|.  ...    ..+..|+   .....+.|.+...     
T Consensus       590 ~a~~lY~~~~r~~~~~----~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~  658 (829)
T KOG2280|consen  590 LALSLYRQFMRHQDRA----T---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA  658 (829)
T ss_pred             hhhHHHHHHHHhhchh----h---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence            5666666654432211    0   11111 2222222222211  100    0122222   2333344444332     


Q ss_pred             -----HHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010740          337 -----YDKMSSVMEYMRK-LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       337 -----~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  410 (502)
                           ..+-+.+...+.. .+....--+.+--+.-+...|+..+|.++-.+.+    -||-..|-.-+.+++..+++++-
T Consensus       659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL  734 (829)
T KOG2280|consen  659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL  734 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence                 1122222222222 1222233445555666777888888888777665    57888888888888888888877


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740          411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE  486 (502)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  486 (502)
                      +++-+...      .+.=|..++.+|.+.|+.++|.+++.+....     .    -.+.+|.+.|++.+|.++.-+
T Consensus       735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence            77655332      1344778888999999999999888766431     1    456778888888888776544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.031  Score=50.49  Aligned_cols=110  Identities=11%  Similarity=0.040  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                      +.+..+.-+...|+...|.++-.+.   .+ |+...|...+.+++..++|++...+...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            3444455566667776666664433   22 4777777778888888887776665432      123456777777777


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740          403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM  452 (502)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  452 (502)
                      ..|+..+|..+...     ++     +..-+..|.++|++.+|.+.--+.
T Consensus       249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            77877777776654     11     244566677778777776654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.74  E-value=0.00095  Score=54.57  Aligned_cols=63  Identities=11%  Similarity=-0.094  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      .|..+...+...|++++|+..|++.......+  ...++..+...|...|++++|...+......
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34444444455555555555555554332111  1224444555555555555555555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.74  E-value=0.00094  Score=54.61  Aligned_cols=92  Identities=11%  Similarity=-0.010  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      .|..+...+...|++++|...|++.......+  ...++..+...+...|++++|+..++...... +.....+..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            34444455555566666666665555432111  12345555555666666666666665555432 2233334444444


Q ss_pred             HH-------HcCCHHHHHHHHH
Q 010740          436 CI-------KADDLMEMERVYK  450 (502)
Q Consensus       436 ~~-------~~g~~~~a~~~~~  450 (502)
                      +.       ..|++++|...++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHH
Confidence            44       5555554444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.031  Score=50.45  Aligned_cols=185  Identities=10%  Similarity=-0.026  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLI-KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG  275 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  275 (502)
                      .++..++.+....--+|...+|..+- .++.-.+++++|.+.--..++..-. +......--.++.-.++.+.+...|++
T Consensus       150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~q  228 (486)
T KOG0550|consen  150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQ  228 (486)
T ss_pred             hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhh
Confidence            34444444433222234444444433 3455678888888776666655221 222222222334456778888888887


Q ss_pred             HHHcCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCcHHH
Q 010740          276 MLESATCKPDVWT-------------MNTILSVFANKGQVDMMERWYEKFRNF---GIDPETRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       276 ~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~  339 (502)
                      .+.-   .|+...             +..-..-..+.|.+..|.+.|.+.+..   ++.++...|........+.|+..+
T Consensus       229 al~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  229 ALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             hhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence            7542   444322             122223456789999999999988863   345667778888888889999999


Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740          340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG  386 (502)
Q Consensus       340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  386 (502)
                      |+.--+...+.+.. -...|..-..++...++|++|.+-|+...+..
T Consensus       306 aisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  306 AISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99888887775221 12233333455666789999999998887654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.0026  Score=54.67  Aligned_cols=97  Identities=11%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHH
Q 010740          296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM  375 (502)
Q Consensus       296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  375 (502)
                      ..+.++|++|+..|.+.++.. +-|..-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence            445667777777777777643 455566666666777777777777666666665433 455677777777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHH
Q 010740          376 EYTFEQMHAEGMKADTKTFCC  396 (502)
Q Consensus       376 ~~~~~~m~~~~~~p~~~~~~~  396 (502)
                      ++.|++.++  +.|+-.+|-.
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHH
Confidence            777776665  3566555533

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.72  E-value=0.017  Score=50.10  Aligned_cols=176  Identities=11%  Similarity=0.063  Sum_probs=95.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRT---FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      ....+...|++++|.+.|+++.... +-+...   .-.+..++.+.+++++|...+++..+..+.....-|...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            3334455666666666666665532 111111   134445566666666666666666665444333333333333221


Q ss_pred             --c---------------CC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740          369 --M---------------GD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF  428 (502)
Q Consensus       369 --~---------------~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  428 (502)
                        .               .+   ...|...|+++++.  -|+             ..-..+|...+..+...   .-.. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la~~-  177 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LAKY-  177 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HHHH-
Confidence              0               11   22344455555443  233             23334454444333221   0011 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          429 YNAVISACIKADDLMEMERVYKRMKEK--HCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      --.+...|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.+.....
T Consensus       178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            124667788899999999999998876  22234556778888999999999988776543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.72  E-value=0.001  Score=59.39  Aligned_cols=285  Identities=12%  Similarity=0.022  Sum_probs=141.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHhh----cCCCCCCCHHHHHHHHH
Q 010740          152 VLLGKSGQPELARKVFNEMVEEGIEPTP----ELYTALLAAYCRNSLIDEAFVTLNQMK----TLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~ll~  223 (502)
                      .-+++.|+......+|+..++.| .-|.    ..|..|..+|.-.+++++|+++...=.    ..+.-.-...+...|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            45788888888888888888877 3443    345666677777778888877643210    00000111223333444


Q ss_pred             HHHhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010740          224 ACVDAMRFELIETLYQD----MDERSVT-PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN  298 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~----~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (502)
                      .+--.|.+++|.-.-.+    ..+.|-. .....+..+...|...|+.-....-     +..|-.+..++          
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p-----ee~g~f~~ev~----------  168 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP-----EEKGAFNAEVT----------  168 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh-----hhcccccHHHH----------
Confidence            44455556555433221    1122211 1223344444444444321100000     00000011000          


Q ss_pred             cCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHH----HcCCC-CChHHHHHHHHHHHh
Q 010740          299 KGQVDMMERWYEKFR----NFGID-PETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFP-WTSSTYNNVIEAFSD  368 (502)
Q Consensus       299 ~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~  368 (502)
                       ..++.|.++|.+-+    +.|-. .-...|..|.+.|.-.|+++.|+...+.-.    +.|-. .....+..+..++.-
T Consensus       169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence             01122333332211    11100 112356666666677778887776654322    22211 123466677777777


Q ss_pred             cCCHhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHH
Q 010740          369 MGDAKHMEYTFEQMHA----EGM-KADTKTFCCLINGYANAGLFHKVISSVRLASKL-----QIAENVSFYNAVISACIK  438 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~  438 (502)
                      .|+++.|.+.|+....    .|- .....+..+|.+.|.-..++++|+.++..-+..     ...-....+-+|..+|..
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            7888888777765432    221 223345566777777777777777776532221     112234556667777777


Q ss_pred             cCCHHHHHHHHHHHH
Q 010740          439 ADDLMEMERVYKRMK  453 (502)
Q Consensus       439 ~g~~~~a~~~~~~~~  453 (502)
                      .|..++|+.+.+.-.
T Consensus       328 lg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  328 LGEHRKALYFAELHL  342 (639)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            777777776665444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.71  E-value=0.0029  Score=61.27  Aligned_cols=65  Identities=8%  Similarity=0.088  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ..|..+.......|++++|...++++.+.+  |+...|..+...|...|+.++|.+.++++..+.|.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            444444444444455555555555555432  34445555555555555555555555555554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.71  E-value=0.0036  Score=60.61  Aligned_cols=134  Identities=9%  Similarity=-0.012  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC--------CHHHHHHHHHHhh
Q 010740          141 QPKEGTYMKLLVLLGKS-----GQPELARKVFNEMVEEGIEPT-PELYTALLAAYCRNS--------LIDEAFVTLNQMK  206 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~  206 (502)
                      +.+..+|...+++....     ++.+.|..+|++..+..  |+ ...|..+..++....        +...+.+..++..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            45556666666554332     22556777777777653  33 344443333322210        1222223333222


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740          207 TLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE  278 (502)
Q Consensus       207 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  278 (502)
                      .....+.+...|..+.......|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            211112333444444444444455555555555554442  3444555555555555555555555555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.70  E-value=0.011  Score=53.05  Aligned_cols=61  Identities=10%  Similarity=0.105  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMK-----ADTK-TFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      +..++..+.+.|++++|.++|+++...-..     .+.. .|...+-++...|++..|.+.++....
T Consensus       158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344445555555555555555555443211     1111 122223344445555555555555543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.68  E-value=6.6e-05  Score=41.23  Aligned_cols=30  Identities=50%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGI  175 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  175 (502)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            677788888888888888888888777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.0042  Score=59.49  Aligned_cols=246  Identities=13%  Similarity=0.117  Sum_probs=150.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740          176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL------IKACVDAMRFELIETLYQDMDERSVTPN  249 (502)
Q Consensus       176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~g~~~~  249 (502)
                      .|.+..|..+.......-.++.|...|-+.....|++.-...-...      ...-+--|++++|+++|-+|.++.    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            5888999999888888888888888888876654443211111111      111122478899999998887662    


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG  329 (502)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  329 (502)
                           ..+..+.+.|++-.+.++++.--....-..-...|+.+...+.....|++|.+.|..-..         ....+.
T Consensus       765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e  830 (1189)
T KOG2041|consen  765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE  830 (1189)
T ss_pred             -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence                 346677788888877777654211100111245788888888888888888888875432         134566


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK  409 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  409 (502)
                      ++.+..++++...+...+.     -+....-.+..++.+.|.-++|.+.|-+--    .|-     ..+..|...+++.+
T Consensus       831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGE  896 (1189)
T ss_pred             HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHH
Confidence            6777666666555544433     366777788888888888888887764422    121     34566777777777


Q ss_pred             HHHHHHHHHhcCCC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          410 VISSVRLASKLQIA-----------ENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       410 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      |.++-+...-..+.           .+.. .---|..+.+.|+.-+|.+++.+|.+
T Consensus       897 avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  897 AVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence            77765532211000           0000 11224455666766666667666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.66  E-value=0.012  Score=46.77  Aligned_cols=130  Identities=14%  Similarity=0.076  Sum_probs=75.4

Q ss_pred             CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCCCHHH
Q 010740          317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---MKADTKT  393 (502)
Q Consensus       317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~  393 (502)
                      ..|++..-..|..+....|++.+|...|.+...--+..|....-.+.++....++...|...++++-+..   -.||  +
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence            3566666666666666777777777777666665555566666666666666666666666666665542   1222  2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK  450 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  450 (502)
                      ...+.+.+...|.+.+|...|+.....  -|+...-......+.++|+.+++..-+.
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            334556666666666666666666653  3333333333444556665555544333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.66  E-value=0.0025  Score=57.04  Aligned_cols=210  Identities=11%  Similarity=0.150  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010740          108 VNTVAETFSDHVLKKQWFQALQVFEMLKE----QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYT  183 (502)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  183 (502)
                      .+.+..+...+-..|+|++|.+.|.....    .+....-...|.....+|.+. ++++|.+.+++..            
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------------  101 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------------  101 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------------
Confidence            35566666666677777777777765422    110000112333333333333 5555555555543            


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCC-CCHHHHHHHH
Q 010740          184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA-MRFELIETLYQDMDE----RSVT-PNTVTQNIVL  257 (502)
Q Consensus       184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~g~~-~~~~~~~~l~  257 (502)
                         ..|...|++..|-+.+..+                ...|... |+++.|.+.|++..+    .|.. .-..++..+.
T Consensus       102 ---~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A  162 (282)
T PF14938_consen  102 ---EIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA  162 (282)
T ss_dssp             ---HHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ---HHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence               3444455544444444332                2233333 555555555555433    1211 0123445556


Q ss_pred             HHHhccCChHHHHHHHHHHHHcCC----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHH
Q 010740          258 GGYGKAGMFDQMERVLSGMLESAT----CKPDVW-TMNTILSVFANKGQVDMMERWYEKFRNFG--IDPE--TRTFNILI  328 (502)
Q Consensus       258 ~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~  328 (502)
                      ..+.+.|++++|.++|+++....-    .+.+.. .|-..+-++...||...|.+.+++.....  +..+  ......|+
T Consensus       163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~  242 (282)
T PF14938_consen  163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL  242 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence            666666777777777766644211    011111 22233345556667777777776665431  1111  33445555


Q ss_pred             HHHHc--cCcHHHHHHHHHHHHH
Q 010740          329 GAYGK--KRMYDKMSSVMEYMRK  349 (502)
Q Consensus       329 ~~~~~--~g~~~~a~~~~~~~~~  349 (502)
                      .+|-.  ...++.+..-|+.+.+
T Consensus       243 ~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  243 EAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHhCCHHHHHHHHHHHcccCc
Confidence            55544  2334555555554433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.64  E-value=0.0012  Score=59.06  Aligned_cols=136  Identities=14%  Similarity=0.084  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCh
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMH----AEGMK-ADTKTFCCLINGYANAGLFHKVISSVRLASKL----QI-AENV  426 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~  426 (502)
                      ..|..|...|.-.|+++.|+..-+.-.    +.|-+ .....+..+.+++.-.|+++.|.+.|+.....    |- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            457777777888899999987655432    33322 22357888999999999999999998865433    21 2234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEK----H-CRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ....+|...|.-..++++|+.++.+-...    + ..-....+.+|..+|...|..++|+.+.+..++...
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            44557888888888999999887654321    1 112466888999999999999999999998887643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.62  E-value=0.022  Score=48.13  Aligned_cols=180  Identities=14%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALL  186 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~  186 (502)
                      .+-.....+...|++++|++.|+.+.......+ -..+.-.++.++.+.|+++.|...+++..+.  -|+.  .-+...+
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence            344455566788999999999998877531122 2336667788888999999999999988776  2332  1222222


Q ss_pred             HHHHhCCCHHHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          187 AAYCRNSLIDEAFVTLNQMKTLPNCQPD-------VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG  259 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~  259 (502)
                      .+.+.........     ..     ..|       ...+..++.-|=......+|...+..+.+.    =...-..+.+.
T Consensus        85 ~g~~~~~~~~~~~-----~~-----~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~  150 (203)
T PF13525_consen   85 LGLSYYKQIPGIL-----RS-----DRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHHHHHHH------T-----T---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHhCccch-----hc-----ccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            2222111111110     00     011       112333444444444455555555544432    11112235566


Q ss_pred             HhccCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010740          260 YGKAGMFDQMERVLSGMLESATCKP-DVWTMNTILSVFANKGQVDMM  305 (502)
Q Consensus       260 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a  305 (502)
                      |.+.|.+..|..-++.+++...-.+ .......++.+|.+.|..+.+
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            7777777777777777776532111 123445566667777666643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.61  E-value=0.00027  Score=47.58  Aligned_cols=52  Identities=13%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE  173 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  173 (502)
                      ..|++++|+++|+.+.+..  +-+...+..+..+|.+.|++++|.++++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455666666666555442  335555555556666666666666666655554

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0041  Score=53.82  Aligned_cols=102  Identities=16%  Similarity=0.108  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740          390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD---DLMEMERVYKRMKEKHCRPDSETFSI  466 (502)
Q Consensus       390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~  466 (502)
                      |...|..|..+|...|+++.|...|....+.. ++|...+..+..++....   +..++..+|+++...+.. |+.+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            33444444444444444444444444444432 334444444444333221   233444444444443211 3334444


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          467 MTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       467 l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      |...+...|++.+|...|+.|++..+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            444444445555555555544444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.55  E-value=0.0074  Score=45.45  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740          154 LGKSGQPELARKVFNEMVEEGIEPT--PELYTALLAAYCRNSLIDEAFVTLNQMK  206 (502)
Q Consensus       154 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  206 (502)
                      +-..|+.++|..+|++....|....  ...+-.+...+...|++++|+.+|++..
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444444444444432222  1223333344444444444444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.52  E-value=0.012  Score=44.39  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=53.1

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChHHHHHHHHHH
Q 010740          362 VIEAFSDMGDAKHMEYTFEQMHAEGMKAD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAE---NVSFYNAVISAC  436 (502)
Q Consensus       362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  436 (502)
                      +..++-..|+.++|+.+|++....|+...  ...+..+...+...|++++|..+++...... +.   +......+..++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence            34455566777777777777776665443  2345556666677777777777776665531 11   222222334455


Q ss_pred             HHcCCHHHHHHHHHHHH
Q 010740          437 IKADDLMEMERVYKRMK  453 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~  453 (502)
                      ...|+.++|++.+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            66677777776665544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.50  E-value=0.0042  Score=51.03  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH
Q 010740          283 KPDVWTMNTILSVFAN-----KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS  357 (502)
Q Consensus       283 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  357 (502)
                      ..+..+|..++..|.+     .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+--        
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence            4466666666666654     46677777777788888888888888888877654 3221 0111111100        


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL  406 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  406 (502)
                             .  .-.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus       114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                   0  112445677778888888888888888888877766554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.48  E-value=0.00075  Score=45.37  Aligned_cols=63  Identities=24%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       155 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      .+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++...   .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            45677777777777777663 446667777777777777777777777777764   3554444333

...

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.47  E-value=0.0063  Score=50.06  Aligned_cols=33  Identities=24%  Similarity=0.172  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAM  229 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  229 (502)
                      +-|++++++|... |+-||..++..+++.+.+.+
T Consensus       120 ~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  120 ECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence            4456666666553 56666666666666665544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.42  E-value=0.087  Score=47.36  Aligned_cols=284  Identities=13%  Similarity=0.064  Sum_probs=140.7

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHhcCCH
Q 010740          156 KSGQPELARKVFNEMVEEGIEPTPELYTALLA--AYCRNSLIDEAFVTLNQMKTLPNCQPDVY--TYSTLIKACVDAMRF  231 (502)
Q Consensus       156 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~  231 (502)
                      -.|+-..|.++-.+..+. +..|......++.  +-.-.|+++.|.+-|+.|...    |...  -...|.-...+.|+.
T Consensus        96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar  170 (531)
T COG3898          96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR  170 (531)
T ss_pred             ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence            345666666665554322 1233333333332  233457777777777777652    2222  233333344556777


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHH---hcCCHHHHH
Q 010740          232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTM--NTILSVFA---NKGQVDMME  306 (502)
Q Consensus       232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~~a~  306 (502)
                      +.|.++-+.....-.. -...+...+...+..|+++.|+++++.-.+..-+.++..--  ..|+.+-.   -..+...|.
T Consensus       171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar  249 (531)
T COG3898         171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR  249 (531)
T ss_pred             HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence            7777666665544222 23456667777777777777777777665544444443221  11221110   112333344


Q ss_pred             HHHHHHHhCCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740          307 RWYEKFRNFGIDPETR-TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  385 (502)
                      ..-.+..+  +.|+.. .-..-..++.+.|+..++-.+++.+=+....|+..      ..|.+..--+.+..-+++..+.
T Consensus       250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHH
Confidence            33333332  233322 22233455666677777777777666654443321      2222222222233333332211


Q ss_pred             -CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 010740          386 -GMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEK  455 (502)
Q Consensus       386 -~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~  455 (502)
                       .++|+ ..+...+..+-...|++..|..--+....  ..|....|-.|.+.-... ||-.++..++.+....
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             12333 34455555666666666666555554444  356666666666554433 6777776666666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.044  Score=46.37  Aligned_cols=130  Identities=12%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH-----HH
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS-----TL  221 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l  221 (502)
                      .+.++..+.-.|.+.-...++.+..+..-+.++.....|++.-.+.|+.+.|..+|++..+..+ ..|..+++     ..
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence            3444555555555555555555555554344555555555555556666666655554443211 12222222     22


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010740          222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLE  278 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  278 (502)
                      ...+.-.+++..|...+.+....+.. |....|.-.-+..-.|+..+|.+.++.+.+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22333444555555555554443222 333333322233334455555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.39  E-value=0.0012  Score=43.85  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE  173 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  173 (502)
                      ..+...|++++|+..|+.+.+..  +-+...+..+..++...|++++|...|+++.+.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34556677777777777776653  445556677777777777777777777776654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.39  E-value=0.096  Score=47.11  Aligned_cols=295  Identities=14%  Similarity=0.073  Sum_probs=191.1

Q ss_pred             HHHHHHHHHH--hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740          181 LYTALLAAYC--RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC--VDAMRFELIETLYQDMDERSVTPNTVTQNIV  256 (502)
Q Consensus       181 ~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  256 (502)
                      -|..|-.+++  -.|+-..|.++-.+..+  -+..|....-.|+.+-  .-.|+++.|.+-|+.|... .+.-.--...|
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgL  160 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGL  160 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHH
Confidence            3455555544  35788888888777654  3456666666666654  4479999999999999864 11111112233


Q ss_pred             HHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHc
Q 010740          257 LGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDPETR--TFNILIGAYGK  333 (502)
Q Consensus       257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~  333 (502)
                      .-.-.+.|..+.|...-+..-+..  ..-...+...+...+..|+++.|+++.+.-.... +.++..  .-..|+.+-..
T Consensus       161 yleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         161 YLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            333457899999999888875542  2345788899999999999999999998776533 233332  12223322111


Q ss_pred             ---cCcHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740          334 ---KRMYDKMSSVMEYMRKLQFPWTSST-YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK  409 (502)
Q Consensus       334 ---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  409 (502)
                         ..+...|.+.-.+..+.  .||..- --.-..++.+.|+..++-.+++.+-+....|+..  .  +..+.+.|+  .
T Consensus       239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--t  310 (531)
T COG3898         239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--T  310 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--c
Confidence               23455555555544443  444332 2334577899999999999999999875555432  2  222344554  4


Q ss_pred             HHHHHHHHHhc-CC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHH
Q 010740          410 VISSVRLASKL-QI-AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA-KEGMNDKVYALEQE  486 (502)
Q Consensus       410 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~  486 (502)
                      +..-++...+. .+ +.|....-.+..+-...|++..|..--+....  ..|....|..|.+.-. ..|+-+++...+-+
T Consensus       311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq  388 (531)
T COG3898         311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ  388 (531)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence            44444433322 13 34556666777888889999998887777665  4678888888888764 55999999999988


Q ss_pred             HHHh
Q 010740          487 KLQM  490 (502)
Q Consensus       487 ~~~~  490 (502)
                      .++.
T Consensus       389 av~A  392 (531)
T COG3898         389 AVKA  392 (531)
T ss_pred             HhcC
Confidence            8764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.02  Score=49.74  Aligned_cols=105  Identities=11%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC
Q 010740          348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG---LFHKVISSVRLASKLQIAE  424 (502)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~  424 (502)
                      ...+.. |...|-.|...|...|+...|...|.+..+.. .++...+..+..++....   ...++..+++++...+ +-
T Consensus       149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~  225 (287)
T COG4235         149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PA  225 (287)
T ss_pred             HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Cc
Confidence            333443 77777777888888888888877777777652 334555555555554332   3457777777777764 55


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      |+.....|...+...|++.+|...|+.|.+.
T Consensus       226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            6777777777778888888888888888775

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.32  E-value=0.0066  Score=53.13  Aligned_cols=100  Identities=7%  Similarity=-0.019  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVISACIKADDLMEMERVYKRMKEKHCR--PDSETFSIMT  468 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--p~~~~~~~l~  468 (502)
                      |...+..+.+.|++++|...|+.+.+.- +.+   ...+..+..+|...|++++|...|+.+.+....  .....+..+.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3333333344566666666666665542 111   234555666666666666666666666653111  1233444455


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          469 EAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       469 ~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      ..+...|+.++|.+.+++.++..|..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            55666666666666666666665543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.25  E-value=0.095  Score=44.27  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcH
Q 010740          432 VISACIKADDLMEMERVYKRMKEKHCRPD----SETFSIMTEAYAKEGMND  478 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~  478 (502)
                      +...|.+.|.+..|..-++.+++. . |+    ......++.+|.+.|..+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~-y-p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIEN-Y-PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHH-S-TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH-C-CCCchHHHHHHHHHHHHHHhCChH
Confidence            444555566666666555555554 1 22    223345555555555555

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.25  E-value=0.0021  Score=43.27  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010740          391 TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD-DLMEMERVYKRMKE  454 (502)
Q Consensus       391 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~  454 (502)
                      ...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3445555555566666666666666555543 344555555666666666 46666666655554

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.24  E-value=0.0013  Score=44.95  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.++++++..|+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            344455555555555555544221 3444444455555555555555555555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.17  E-value=0.0012  Score=45.84  Aligned_cols=64  Identities=19%  Similarity=0.270  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKEK----HC-RPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      .+|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+..+|...|++++|+++++++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45677777788888888888887776643    11 122 446777788888888888888888887765

...

>PRK15331 chaperone protein SicA; Provisional

Probab=97.14  E-value=0.019  Score=45.29  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=61.6

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740          365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME  444 (502)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  444 (502)
                      -+...|++++|..+|.-+...+. -+..-+..|..++-..+++++|+..|......+ ..|+..+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            34567888888888887776542 244556667777777788888888887766654 3444445566777888888888


Q ss_pred             HHHHHHHHHH
Q 010740          445 MERVYKRMKE  454 (502)
Q Consensus       445 a~~~~~~~~~  454 (502)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            8888887776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.14  E-value=0.15  Score=46.76  Aligned_cols=167  Identities=9%  Similarity=-0.030  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHcCCCCChHHHH
Q 010740          287 WTMNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGK---KRMYDKMSSVMEYMRKLQFPWTSSTYN  360 (502)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~  360 (502)
                      .+...++-+|....+++..+++.+.+...-   +.-...+--...-++.+   .|+.++|++++..+......+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            344456667888889999999988887641   12222333344445566   788888888888866666666888888


Q ss_pred             HHHHHHHhc---------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-H---HHHHHH---H-HHHhcCC-
Q 010740          361 NVIEAFSDM---------GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-H---KVISSV---R-LASKLQI-  422 (502)
Q Consensus       361 ~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~---~a~~~~---~-~~~~~~~-  422 (502)
                      .+.+.|-..         ...+.|...|.+.-+.  .||..+--.++..+...|.. +   +..++-   . ...+.|. 
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~  299 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL  299 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence            887766421         1244555555554442  34443322222222233321 1   222222   0 1111121 


Q ss_pred             --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          423 --AENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       423 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                        ..+-..+..++.++.-.|+.++|.+..++|...
T Consensus       300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              122333445555555566666666666666543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.13  E-value=0.01  Score=47.18  Aligned_cols=74  Identities=20%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 010740          107 WVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVE-----EGIEPTPEL  181 (502)
Q Consensus       107 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~  181 (502)
                      +...+..++..+...|++++|+.+.+.+....  +.+...|..+|.+|...|+...|.++|+.+.+     .|+.|+..+
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34566666667777888888888888888764  66777888888888888888888888887753     377777665


Q ss_pred             H
Q 010740          182 Y  182 (502)
Q Consensus       182 ~  182 (502)
                      -
T Consensus       139 ~  139 (146)
T PF03704_consen  139 R  139 (146)
T ss_dssp             H
T ss_pred             H
Confidence            4

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.12  E-value=0.011  Score=51.82  Aligned_cols=87  Identities=13%  Similarity=-0.002  Sum_probs=52.2

Q ss_pred             HhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCC
Q 010740          119 VLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g  193 (502)
                      ...|++++|+..|+.+.+..  +-+   ..++..+...|...|++++|...|+.+.+.-  -+.....+-.+..++...|
T Consensus       154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            44567777777777666542  212   2456666677777777777777777766541  1112344445555666667


Q ss_pred             CHHHHHHHHHHhhc
Q 010740          194 LIDEAFVTLNQMKT  207 (502)
Q Consensus       194 ~~~~a~~~~~~~~~  207 (502)
                      +.++|..+|+++.+
T Consensus       232 ~~~~A~~~~~~vi~  245 (263)
T PRK10803        232 DTAKAKAVYQQVIK  245 (263)
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777777766665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.3  Score=47.53  Aligned_cols=75  Identities=9%  Similarity=0.057  Sum_probs=38.2

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          157 SGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIET  236 (502)
Q Consensus       157 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  236 (502)
                      -|++++|.++|-+|.+++         ..|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+
T Consensus       747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666555432         23444555566655555554321110001113456666666666666666666


Q ss_pred             HHHH
Q 010740          237 LYQD  240 (502)
Q Consensus       237 ~~~~  240 (502)
                      .|..
T Consensus       818 yY~~  821 (1189)
T KOG2041|consen  818 YYSY  821 (1189)
T ss_pred             HHHh
Confidence            6544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.09  E-value=0.21  Score=45.21  Aligned_cols=110  Identities=17%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                      .+.+..+.-+...|+...|.++-.+..    -||..-|...+.+++..++|++-.++...      .-++.-|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            355566777788899988888866653    47889999999999999999988876542      22345689999999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740          437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQE  486 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  486 (502)
                      .+.|...+|..++.++.      +    ..-+..|.+.|++.+|.+..-+
T Consensus       248 ~~~~~~~eA~~yI~k~~------~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKIP------D----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHCCCHHHHHHHHHhCC------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999999988721      2    4446778899999888766433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.02  E-value=0.011  Score=46.96  Aligned_cols=72  Identities=21%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFS  465 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~  465 (502)
                      ++..++..+...|++++|..+++.+.... |.+...|..++.+|...|+..+|.++|+++..     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            34445566667777777777777777664 55677777777777777777777777776642     37777666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.90  E-value=0.019  Score=43.78  Aligned_cols=98  Identities=10%  Similarity=0.010  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      |..++..++.++++.|+++....+++..-.  +.++...         ..+.          ........|+..+..+++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv   59 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV   59 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence            345677777777777777777777665432  1111000         0000          111123445666666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHh
Q 010740          223 KACVDAMRFELIETLYQDMDE-RSVTPNTVTQNIVLGGYG  261 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~  261 (502)
                      .+|+..+++..|.++++...+ -+++.+..+|..|+.-..
T Consensus        60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            666666666666666655443 345555556666555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK15331 chaperone protein SicA; Provisional

Probab=96.87  E-value=0.11  Score=41.02  Aligned_cols=89  Identities=10%  Similarity=-0.078  Sum_probs=65.1

Q ss_pred             HHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 010740          187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      .-+...|++++|..+|+-+...+  .-+..-|..|..++...+++++|...|......+.. |...+.....+|...|+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence            34457788888888888776643  455666777777788888888888888876665432 455556667788888888


Q ss_pred             HHHHHHHHHHHH
Q 010740          267 DQMERVLSGMLE  278 (502)
Q Consensus       267 ~~a~~~~~~~~~  278 (502)
                      +.|...|...++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888888765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.85  E-value=0.033  Score=42.44  Aligned_cols=56  Identities=7%  Similarity=-0.044  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740          244 RSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       244 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (502)
                      ....|+..+..+++.+|+..|++..|+++++...+..+++.+...|..|++-+...
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            34567778888888888888888888888888877777777777777777655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.81  E-value=0.27  Score=42.00  Aligned_cols=80  Identities=18%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      +.+-.....+.|+|++|.+.|+.+..+....| ...+.-.++.++-+.++++.|+..+++....--.....-|...|.++
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            33344445567888888888887776532222 23355566667777788888888777777653222223344444444


Q ss_pred             H
Q 010740          190 C  190 (502)
Q Consensus       190 ~  190 (502)
                      +
T Consensus       117 s  117 (254)
T COG4105         117 S  117 (254)
T ss_pred             H
Confidence            4

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.81  E-value=0.0066  Score=41.38  Aligned_cols=53  Identities=19%  Similarity=0.164  Sum_probs=23.0

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740          154 LGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       154 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  207 (502)
                      |.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|++..+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444444444444444432 23333444444444444444444444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.68  E-value=0.17  Score=48.67  Aligned_cols=51  Identities=8%  Similarity=-0.037  Sum_probs=25.3

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH  383 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  383 (502)
                      ...+...+.+...+..|-++|..|-..         ..+++.....++|.+|..+-+...
T Consensus       750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc
Confidence            333333344445555555555554331         234455555666666665555443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.65  E-value=0.18  Score=37.88  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          426 VSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      +...-.+..+|.+.|+..++.+++.++-+.|
T Consensus       120 p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen  120 PEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3333333344444444444444444333333

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.64  E-value=0.0086  Score=41.46  Aligned_cols=62  Identities=13%  Similarity=0.181  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKL----QI-AEN-VSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +++.+...|...|++++|+..+++..+.    |- .+. ..++..+..+|...|++++|++++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555666666666666666554432    10 111 44566667777777777777777766543

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.4  Score=41.76  Aligned_cols=167  Identities=12%  Similarity=0.063  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740           90 PIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE  169 (502)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  169 (502)
                      +-..+.+.+++.-.. .- .....-.......|++.+|..+|..+....  +-+...-..++.+|...|+++.|..++..
T Consensus       118 Pesqlr~~ld~~~~~-~~-e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         118 PESQLRQFLDKVLPA-EE-EEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             cHHHHHHHHHHhcCh-HH-HHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344556666554322 11 222223445667888888888888877663  44556777788888888888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC
Q 010740          170 MVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER--SVT  247 (502)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~  247 (502)
                      +....-.........-|..+.+.....+...+-.+.-..   +-|...-..+...+...|+.+.|.+.+-.+.+.  |..
T Consensus       194 lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         194 LPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            765421111222223344455555555444554554442   346666666777777777777777666555543  222


Q ss_pred             CCHHHHHHHHHHHhccC
Q 010740          248 PNTVTQNIVLGGYGKAG  264 (502)
Q Consensus       248 ~~~~~~~~l~~~~~~~g  264 (502)
                       |...-..++..+.-.|
T Consensus       271 -d~~~Rk~lle~f~~~g  286 (304)
T COG3118         271 -DGEARKTLLELFEAFG  286 (304)
T ss_pred             -CcHHHHHHHHHHHhcC
Confidence             3444445555444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.57  E-value=0.3  Score=47.20  Aligned_cols=170  Identities=13%  Similarity=0.042  Sum_probs=111.8

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh------HHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHH
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS------STYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKT  393 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~  393 (502)
                      +..+++..+=.|+-+.+++.+....+.+--..+      -.|..++..++.    ..+.+.|.++++.+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            345555556667888888777766553211111      234444444433    35678899999998875  577666


Q ss_pred             HHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740          394 FCCL-INGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE  469 (502)
Q Consensus       394 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  469 (502)
                      |... .+.+...|++++|++.++.+....   -+.....+--+...+.-.++|++|.+.|..+.+..- .+..+|..+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            5433 456677899999999998765421   122344566677788889999999999999998632 24445544443


Q ss_pred             -HHHhcCCc-------HHHHHHHHHHHHhhhhccc
Q 010740          470 -AYAKEGMN-------DKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       470 -~~~~~g~~-------~~A~~~~~~~~~~~~~~~~  496 (502)
                       ++...|+.       ++|.++++++........+
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g  382 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG  382 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence             34578888       8899999988887655433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.4  Score=40.86  Aligned_cols=133  Identities=11%  Similarity=0.007  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLI----  398 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~----  398 (502)
                      +.+.++.++...|.+.-....++++++...+.++.....|++.-.+.||.+.|...|++..+..-+.|..+++.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4566677777778888888888888887767788888888888888888888888888776544344444444333    


Q ss_pred             -HHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          399 -NGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       399 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                       ..|.-++++..|...+.++...+ +.++...|.-.-+..-.|+..+|++.++.|.+..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             34455667777777777776654 3344444444444445688888888888888763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.55  E-value=0.14  Score=48.59  Aligned_cols=160  Identities=18%  Similarity=0.179  Sum_probs=105.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      .+..+.+++++++.++.+.-.-.+.+  .....+.++..+-+.|-.+.|+++...-.            .-.....+.|+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~  333 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN  333 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence            44556688999988777522111102  24568899999999999999998865432            23456678899


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                      ++.|.++.++.       .+...|..|.+.....|+++.|++.|++..+         +..|+-.|.-.|+.+.-.++.+
T Consensus       334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence            99998775443       4677899999999999999999999988653         4566777888888888888777


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740          275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEK  311 (502)
Q Consensus       275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (502)
                      ....++       -++....++.-.|+.++..+++.+
T Consensus       398 ~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  398 IAEERG-------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHTT--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHcc-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            764432       255566666677888887777754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.55  E-value=0.084  Score=45.25  Aligned_cols=75  Identities=25%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          130 VFEMLKEQPFYQPKEGTYMKLLVLLGKS----------------GQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      .++.|.+-| +.-|..+|+.|++.+-+.                .+-+-+.+++++|...|+.||..+-..++.++.+.+
T Consensus        94 ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen   94 ALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            334444444 455555666555544332                123446677777777777777777777777776665


Q ss_pred             C-HHHHHHHHHHh
Q 010740          194 L-IDEAFVTLNQM  205 (502)
Q Consensus       194 ~-~~~a~~~~~~~  205 (502)
                      - ..+...++-.|
T Consensus       173 ~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  173 FPTKKVKRMLYWM  185 (406)
T ss_pred             ccHHHHHHHHHhh
Confidence            4 23333333334

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.45  E-value=0.75  Score=42.59  Aligned_cols=81  Identities=5%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHhcCCCC----ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 010740          407 FHKVISSVRLASKLQIAE----NVSFYNAVISA--CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV  480 (502)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A  480 (502)
                      +..-..+-+-+.+.|++|    +...-|.|.++  +..+|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            344444444555567665    34445555554  4568899888755444443  789999999999999999999999


Q ss_pred             HHHHHHHHH
Q 010740          481 YALEQEKLQ  489 (502)
Q Consensus       481 ~~~~~~~~~  489 (502)
                      .+++.+...
T Consensus       515 ~~~l~~LP~  523 (549)
T PF07079_consen  515 WEYLQKLPP  523 (549)
T ss_pred             HHHHHhCCC
Confidence            999987543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.42  E-value=0.099  Score=39.11  Aligned_cols=91  Identities=9%  Similarity=-0.022  Sum_probs=43.9

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHcCC
Q 010740          365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF---YNAVISACIKADD  441 (502)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~  441 (502)
                      +++..|+.+.|++.|.+.+.. .+-....||.-..++.-+|+.++|++-+++..+..-.-....   |-.-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            344555666666666555543 122344555555555555555555555555554421112111   1122223444555


Q ss_pred             HHHHHHHHHHHHHCC
Q 010740          442 LMEMERVYKRMKEKH  456 (502)
Q Consensus       442 ~~~a~~~~~~~~~~g  456 (502)
                      -+.|..-|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            555555555555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.13  Score=44.22  Aligned_cols=102  Identities=10%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RP-DSETFSIMT  468 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p-~~~~~~~l~  468 (502)
                      .|+.-+. +...|++..|...|...++..  -.-....+-.|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            3444333 345566777777777776652  111233455677778888888888888877776421 12 245667777


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          469 EAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .+..+.|+.++|...|++..+..|..+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            777888888888888888887776654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.35  E-value=0.82  Score=42.02  Aligned_cols=169  Identities=15%  Similarity=0.079  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHhhcCCCCCCCHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEG---IEPTPELYTALLAAYCR---NSLIDEAFVTLNQMKTLPNCQPDVYT  217 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~  217 (502)
                      ..+...++-.|....+++...++++.+....   +.-+..+-....-++.+   .|+.++|++++..+... ...++..+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~  219 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDT  219 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHH
Confidence            3355566667888888999999998887651   12233333344555666   78889999998884432 33577777


Q ss_pred             HHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH----HHHHHH---HHHHHcCC
Q 010740          218 YSTLIKACVD---------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD----QMERVL---SGMLESAT  281 (502)
Q Consensus       218 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~~~~~  281 (502)
                      |..+...|-.         ....++|...|.+.-+.  .||...--.++..+...|...    +..++-   ..+..+.|
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg  297 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG  297 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence            7777666532         12345666666654443  234333222333333333211    111111   11111111


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          282 ---CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF  315 (502)
Q Consensus       282 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (502)
                         -..+-+.+.+++.++.-.|++++|.+..++|...
T Consensus       298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence               1234445555556666666666666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.34  E-value=0.0046  Score=37.07  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      +|..+...|.+.|++++|.++++++++..|++...|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~   38 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW   38 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            344555555555555555555555555555555444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.16  Score=46.19  Aligned_cols=94  Identities=9%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS  367 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  367 (502)
                      ++..+.-+|.+.+++.+|++.-++.+..+ +.|....-.-..+|...|+++.|+..|..+++..+. |-..-+.++.+-.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~  336 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ  336 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            45555566666666666666666666554 555555555566666666666666666666665443 3333333333333


Q ss_pred             hcCCHh-HHHHHHHHHH
Q 010740          368 DMGDAK-HMEYTFEQMH  383 (502)
Q Consensus       368 ~~~~~~-~a~~~~~~m~  383 (502)
                      +..... ...++|..|.
T Consensus       337 k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            332222 2244555554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.30  E-value=0.18  Score=45.00  Aligned_cols=47  Identities=9%  Similarity=0.132  Sum_probs=22.8

Q ss_pred             HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          226 VDAMRFELIETLYQDMDER--SVTPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      ....+.+.++..+.....+  +...-..++..+..+.++.|.+++++..
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            3455666666666554433  0111223444455555556655555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=1.3  Score=43.90  Aligned_cols=99  Identities=10%  Similarity=0.050  Sum_probs=68.5

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQP---KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      +.+.+.+++|+..-+.....   .|   -.......|..+...|++++|-...-.|.    .-+..-|..-+..+...++
T Consensus       366 ll~~k~yeeAl~~~k~~~~~---~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~  438 (846)
T KOG2066|consen  366 LLEKKKYEEALDAAKASIGN---EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQ  438 (846)
T ss_pred             HHHhhHHHHHHHHHHhccCC---ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccc
Confidence            55778999999888776543   33   34577788899999999999999998887    3466777777777777766


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD  227 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  227 (502)
                      ......+   +... .-..+...|..++..+..
T Consensus       439 l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  439 LTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cchhhcc---CCCC-CcccCchHHHHHHHHHHH
Confidence            5544333   3321 112456678877777766

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.29  E-value=0.026  Score=52.27  Aligned_cols=97  Identities=11%  Similarity=0.043  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740          389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV----SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF  464 (502)
Q Consensus       389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~  464 (502)
                      .+...++.+..+|...|++++|+..|+..++.+  |+.    ..|..+..+|...|+.++|+..+++..+.+    ...|
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f  146 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKF  146 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhH
Confidence            356789999999999999999999999998864  543    358889999999999999999999999852    1123


Q ss_pred             HHHHH--HHHhcCCcHHHHHHHHHHHHhh
Q 010740          465 SIMTE--AYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       465 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ..+..  .+....+..+..++++++.+-+
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G  175 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGG  175 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence            21111  1122234446666777666654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.26  E-value=0.4  Score=37.63  Aligned_cols=62  Identities=10%  Similarity=0.154  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      .++..|.+.+.++++..++..+..         +...+..+... ++.+.|.+++.+-      -+...|..++..+.
T Consensus        74 ~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       74 KVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            344555555555555555543321         12222333333 5555555555441      14555555555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.25  E-value=0.091  Score=48.81  Aligned_cols=67  Identities=10%  Similarity=-0.056  Sum_probs=45.5

Q ss_pred             CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740          318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS---STYNNVIEAFSDMGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  385 (502)
                      +.+...++.+..+|.+.|++++|+..|+...+.+.. +.   .+|..+..+|...|+.++|++.+++.++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344566777777777777777777777777766444 22   34777777777777777777777777664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.23  E-value=0.23  Score=47.30  Aligned_cols=130  Identities=12%  Similarity=0.095  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 010740          287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF  366 (502)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  366 (502)
                      ...+.++.-+.+.|..+.|+.+-..-.            .-.....+.|+++.|.++.++.      .+...|..|....
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A  357 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence            334455555555555555554432211            1122233445555555443211      1444555555555


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740          367 SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  446 (502)
                      ...|+++-|.+.|++..+         |..|+-.|...|+.+.-.++.+.....|      -++....++.-.|+.++..
T Consensus       358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred             HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence            555555555555554332         3344444455555554444444444433      1333333344445555544


Q ss_pred             HHH
Q 010740          447 RVY  449 (502)
Q Consensus       447 ~~~  449 (502)
                      +++
T Consensus       423 ~lL  425 (443)
T PF04053_consen  423 DLL  425 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.76  Score=40.15  Aligned_cols=145  Identities=12%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF  231 (502)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  231 (502)
                      ......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.... -.........-+..+.+....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence            34556677777777777776653 3345556667777777777777777777765431 001111111223334444444


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                      .+...+-.+.-..  +-|...-..+...+...|+.+.|.+.+-.++.+..-.-|...-..++..+.-.|
T Consensus       220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            4444444443332  225566666667777777777777766666554322334444455555554444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.17  Score=45.97  Aligned_cols=129  Identities=15%  Similarity=0.004  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCC----CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPF----YQP---------KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEP  177 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  177 (502)
                      ...--..+.+.|+|..|..-|+.+...-.    .++         -..++..+.-++.+.+++..|++..++.+..+ +.
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~  289 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PN  289 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence            33344567788999999998887543210    111         11244455556666666666666666666554 45


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 010740          178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL-IETLYQDMD  242 (502)
Q Consensus       178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~  242 (502)
                      |....-.-..+|...|+++.|+..|+++.+..  +.|..+-+.|+.+..+...+.. ..++|..|.
T Consensus       290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  290 NVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555666666666666666666666532  3333333333333333333222 244455444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.15  E-value=0.63  Score=44.98  Aligned_cols=88  Identities=9%  Similarity=0.047  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE---------  462 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~---------  462 (502)
                      .+...+...+.+...+..|-++|..|-+.         ..+++.....++|++|..+-+...+  +.||+.         
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE  816 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence            33444444444455555566666554332         2455556666666666666655443  223322         


Q ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          463 --TFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       463 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                        -|.-.-.+|.+.|+..+|.+++++....
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence              1222234667777777777777775543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.11  E-value=0.78  Score=39.43  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          229 MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       229 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      +....+...+.......... ....+......+...+.+..+...+...............+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            44455555555554442221 24555556666666666666666666654310112334445555555666666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHH-HHHccCcHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          308 WYEKFRNFGIDPETRTFNILIG-AYGKKRMYDKMSSVMEYMRKLQF--PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      .+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666665433222 111222222 45556666666666665543211  01222233333334445555555555555554


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .........+..+...+...++++.+...+....... +.....+..+...+...+..+++...+.+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3211123444555555555555555555555554432 11122233333333344445555555555544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.03  E-value=0.84  Score=39.07  Aligned_cols=179  Identities=13%  Similarity=0.117  Sum_probs=103.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---
Q 010740          295 VFANKGQVDMMERWYEKFRNFG--IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM---  369 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  369 (502)
                      .-.+.|++++|.+.|+.+....  -+-...+.-.++.++.+.++++.|+..+++.....+.....-|...|.+++.-   
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence            3457788888888888887542  12335566667777888888888888888887776555555555555555422   


Q ss_pred             ----CCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740          370 ----GDAKH---MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL  442 (502)
Q Consensus       370 ----~~~~~---a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  442 (502)
                          .|...   |..-|+++++.  -|+.             .-...|...+..+...=    ...=-.+.+.|.+.|.+
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~L----A~~Em~IaryY~kr~~~  183 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDAL----AGHEMAIARYYLKRGAY  183 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHH----HHHHHHHHHHHHHhcCh
Confidence                22222   33333333332  2222             11222222222222110    00012456778888888


Q ss_pred             HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          443 MEMERVYKRMKEKHCRPD---SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       443 ~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ..|..-+++|++. .+-+   ...+..+..+|...|-.++|.+.-+-+....|+
T Consensus       184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~  236 (254)
T COG4105         184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD  236 (254)
T ss_pred             HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence            8888888888876 3222   334556677888888888887766554444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.02  E-value=1.1  Score=40.29  Aligned_cols=124  Identities=12%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH----cCCCCCh-HHH--
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFG-----IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK----LQFPWTS-STY--  359 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~-~~~--  359 (502)
                      +..++...+.++++++.|+.....-     --....++..|...|.+..++++|.-+..+..+    .++. |. .-|  
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~  206 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA  206 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence            4444555555556665555544311     012234455555566666666655544333222    2222 11 111  


Q ss_pred             ---HHHHHHHHhcCCHhHHHHHHHHHH----HcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740          360 ---NNVIEAFSDMGDAKHMEYTFEQMH----AEGMKAD-TKTFCCLINGYANAGLFHKVISSVRL  416 (502)
Q Consensus       360 ---~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (502)
                         -.+.-++...|....|.+.-++..    ..|-.+. ......+...|...|+.+.|+.-|+.
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence               122233444555555554444432    2221111 12334455566666666666555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.19  Score=43.25  Aligned_cols=88  Identities=23%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhC
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPK---EGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLAAYCRN  192 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  192 (502)
                      +...|++..|.+-|....+..  +-+   ..++..|...+...|+++.|..+|..+.+.-  .+--+..+-.|..+..+.
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            344555666666665555432  211   2244555566666666666666665555431  011134555555555555


Q ss_pred             CCHHHHHHHHHHhhc
Q 010740          193 SLIDEAFVTLNQMKT  207 (502)
Q Consensus       193 g~~~~a~~~~~~~~~  207 (502)
                      |+.++|..+|+++.+
T Consensus       229 ~~~d~A~atl~qv~k  243 (262)
T COG1729         229 GNTDEACATLQQVIK  243 (262)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            666666666655554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.94  E-value=0.018  Score=32.61  Aligned_cols=31  Identities=13%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      +|..|...|.+.|++++|++++++++....+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4667788888888888888888886655443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.92  E-value=1.2  Score=39.87  Aligned_cols=164  Identities=11%  Similarity=0.094  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHccCcH---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          323 TFNILIGAYGKKRMY---DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN  399 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  399 (502)
                      ++..++.+|...+..   ++|..+++.+...... .+..+..-+..+.+.++.+++.+++.+|+..- .-....+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            445556666655543   3444455555433322 34444444555555667777777777776542 112233333333


Q ss_pred             HH---HhcCChHHHHHHHHHHHhcCCCCChH-HHHH-HHHH---HHHcC------CHHHHHHHHHHHHHC-CCCCCHHHH
Q 010740          400 GY---ANAGLFHKVISSVRLASKLQIAENVS-FYNA-VISA---CIKAD------DLMEMERVYKRMKEK-HCRPDSETF  464 (502)
Q Consensus       400 ~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~~---~~~~g------~~~~a~~~~~~~~~~-g~~p~~~~~  464 (502)
                      .+   ... ....+...+..+....+.+... .... ++..   ....+      .++...++++..... +.+.+..+-
T Consensus       164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            33   222 2344555554444433344332 1111 1111   11111      144444445533222 222333332


Q ss_pred             H---HH----HHHHHhcCCcHHHHHHHHHHHH
Q 010740          465 S---IM----TEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       465 ~---~l----~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      .   ++    +..+.+.+++++|.++++-.+.
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            2   22    2346678899999999986653

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.92  E-value=1.2  Score=41.92  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          395 CCLINGYANAGLFHKVISSVRLASKLQ-IAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       395 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      ..+..++.+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            445556666777777777777665432 222344566677777777777777777777654

The molecular function of this protein is uncertain.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.89  E-value=1.2  Score=39.86  Aligned_cols=132  Identities=13%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--c----CcHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHhcCC--
Q 010740          303 DMMERWYEKFRNFGIDPETRTFNILIGAYGK--K----RMYDKMSSVMEYMRKLQFP---WTSSTYNNVIEAFSDMGD--  371 (502)
Q Consensus       303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--  371 (502)
                      ++.+.+++.|.+.|..-+..+|-+.......  .    ....++..+++.|.+..+-   ++-..+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            4566677777777777776666543332222  1    2245677777777776432   233344444333  2222  


Q ss_pred             --HhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          372 --AKHMEYTFEQMHAEGMKADTK--TFCCLINGYANAGL--FHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       372 --~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                        .+.++.+|+.+.+.|...+..  ....++..+.....  ...+.++++.+.+.|++.....|..+.-..
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence              345666777777766544322  23333322222211  345666677777777776666665554433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.86  E-value=0.23  Score=38.37  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQP-KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      +........+.|+|++|++.|+.+..+-...+ ...+...|+.+|.+.+++++|...+++.++..-.....-|...+.++
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            34445566788999999999999988732222 23467788999999999999999999999874222223455555554


Q ss_pred             HhC
Q 010740          190 CRN  192 (502)
Q Consensus       190 ~~~  192 (502)
                      +..
T Consensus        93 ~~~   95 (142)
T PF13512_consen   93 SYY   95 (142)
T ss_pred             HHH
Confidence            443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.85  E-value=1.9  Score=41.62  Aligned_cols=86  Identities=14%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhCCCHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLG-KSGQPELARKVFNEMVEE-GIE-PTPELYTALLAAYCRNSLID  196 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~  196 (502)
                      +.|..+.+.++|+.....  ++.+...|......+. ..|+.+.....|+..+.. |.. .+...|...|.--..++++.
T Consensus        91 klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k  168 (577)
T KOG1258|consen   91 KLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK  168 (577)
T ss_pred             HhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence            346666666666665553  4445555554443333 445666666666666543 211 23445566666556666666


Q ss_pred             HHHHHHHHhhc
Q 010740          197 EAFVTLNQMKT  207 (502)
Q Consensus       197 ~a~~~~~~~~~  207 (502)
                      ....+|+++.+
T Consensus       169 ~v~~iyeRile  179 (577)
T KOG1258|consen  169 RVANIYERILE  179 (577)
T ss_pred             HHHHHHHHHHh
Confidence            66666666665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.35  Score=42.75  Aligned_cols=151  Identities=6%  Similarity=-0.051  Sum_probs=84.1

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE---GIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +|++.+|-..++++.+.  +|-|..++...=++|.-.|+.+.-...+++....   +++-...+...+.-++...|-+++
T Consensus       116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            45666666666666654  4556666666666777777777666666666543   222122333334445556677777


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVTPNTVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                      |.+.-++..+.+  +.|...-.++...+-..+++.++.+++.+-...   +.-.-..-|=...-.+...+.++.|+++|+
T Consensus       194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            777777766643  556666666666666677777776665543221   000001111122223445567777777776


Q ss_pred             H
Q 010740          275 G  275 (502)
Q Consensus       275 ~  275 (502)
                      .
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            4

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.76  E-value=1.6  Score=41.25  Aligned_cols=169  Identities=9%  Similarity=0.043  Sum_probs=96.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      ++...-+.++.++-++.-+++.+.   .|+ ...|..|..  -......+|.++|++..+.|-    ..+..-- .....
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei---~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~  243 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEI---NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHH  243 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh---hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcc
Confidence            444445667777777777777664   333 233333322  234557889999988876541    1111000 00011


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHH
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT-PNTVTQNIVLGGYGKAGMFDQMER  271 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~a~~  271 (502)
                      |.      .++.+... ...+-..+-..+..++.+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..
T Consensus       244 g~------~~e~~~~R-dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  244 GH------FWEAWHRR-DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             cc------hhhhhhcc-ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence            11      11112111 12233444456777888899999999999999865322 244577789999999999999999


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740          272 VLSGMLESATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (502)
                      ++.+.-+....+.-...|+..+--+...
T Consensus       317 lL~kYdDi~lpkSAti~YTaALLkaRav  344 (539)
T PF04184_consen  317 LLAKYDDISLPKSATICYTAALLKARAV  344 (539)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHhh
Confidence            9988732211122345566655433333

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.73  E-value=1.7  Score=40.38  Aligned_cols=65  Identities=11%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKTFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      ...+|..++..+.+.|.++.|...+.++...+...   ++.....-.+..-..|+.++|...++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677788888888888888888888887643211   334444556667778888888888877766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.69  E-value=0.12  Score=44.25  Aligned_cols=103  Identities=14%  Similarity=0.253  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740          355 TSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY  429 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (502)
                      |-.+|-..+..+...     +.++-....++.|.+.|+.-|..+|..|++.+-+..                +.|. .++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf  128 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF  128 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence            666676666666543     456666677778888888888888888877654432                1121 122


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      ..+.-.|-+  +-+-++.++++|...|+.||..+-..|++++.+.|-
T Consensus       129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            222222222  223466777777777777787777777777776664

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.67  E-value=0.78  Score=35.95  Aligned_cols=83  Identities=11%  Similarity=0.031  Sum_probs=39.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      ++..+...+.......+++.+...+  ..+...++.++..|++.+ .....+.+..      ..+......+++.|.+.+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            3444444555666666666665554  244455666666665543 2222222221      112222333555555555


Q ss_pred             CHHHHHHHHHHh
Q 010740          194 LIDEAFVTLNQM  205 (502)
Q Consensus       194 ~~~~a~~~~~~~  205 (502)
                      .++++.-++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.65  E-value=1.5  Score=39.14  Aligned_cols=124  Identities=13%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             HhhhcHHHHHHHHHHHHhCC-CCCCCHH-----HHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCCH----
Q 010740          119 VLKKQWFQALQVFEMLKEQP-FYQPKEG-----TYMKLLVLLGKSG-QPELARKVFNEMVEE--------GIEPTP----  179 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~~----  179 (502)
                      .+.|+.+.|..++.++.... ...|+..     .+..+.......+ +++.|...+++..+.        ...++.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            35788888888888776543 1233322     1222233334445 777766666654432        111221    


Q ss_pred             -HHHHHHHHHHHhCCC---HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          180 -ELYTALLAAYCRNSL---IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       180 -~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                       .++..++.+|...+.   .++|..+++.+....  +-....+..-+..+.+.++.+.+.+.+.+|...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence             334445555555444   233444554554322  122333333444444455666666666666554

It is also involved in sporulation [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.63  E-value=0.42  Score=42.29  Aligned_cols=155  Identities=8%  Similarity=-0.081  Sum_probs=104.5

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH----HHHHHHHHHHhcCCH
Q 010740          297 ANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS----TYNNVIEAFSDMGDA  372 (502)
Q Consensus       297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~  372 (502)
                      -..|+..+|-..++++++ ..|.|...+..-=.+|...|+.+.-...++++... ..+|..    .-..+..++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            357788888888888887 45777777887788888888888888888877654 112332    223334455678889


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740          373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ---IAENVSFYNAVISACIKADDLMEMERVY  449 (502)
Q Consensus       373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~  449 (502)
                      ++|++.-++..+.+ +.|.-.-..+...+.-.|+..++.++..+-...-   .-.-..-|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99988888877754 4466666777777788888888888776543321   0111222333444556678889999998


Q ss_pred             HHHHH
Q 010740          450 KRMKE  454 (502)
Q Consensus       450 ~~~~~  454 (502)
                      ++-+-
T Consensus       271 D~ei~  275 (491)
T KOG2610|consen  271 DREIW  275 (491)
T ss_pred             HHHHH
Confidence            75443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.62  E-value=3.6  Score=43.22  Aligned_cols=130  Identities=12%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFY--QPKEGTYMKLLVLLGKS-GQPELARKVFNEMVEEGIEPTPELYTAL  185 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l  185 (502)
                      ..+.+.++.++.+++|.+|+++.+.-+-.-.+  ..+...|..-+.++.+. ++.+-....+-.+...++  +...|...
T Consensus       678 ~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDv--tk~~y~~~  755 (1265)
T KOG1920|consen  678 ILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDV--TKTMYSST  755 (1265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchh--hhhhcccc
Confidence            45666777888889999988877654322111  12233444444455443 445544445555543321  11222111


Q ss_pred             H----HHHHhC----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 010740          186 L----AAYCRN----SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAM--RFELIETLYQDMDE  243 (502)
Q Consensus       186 ~----~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~  243 (502)
                      .    ..|...    .+.+...+.++.....  ..|+ .....++..|.+.+  .++++++...+...
T Consensus       756 ~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  756 SGSGKQVYMSRDPYDNKVNSVCDAVRNALER--RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             ccccceeEEeccchhhHHHHHHHHHHHHHhh--cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            1    011111    2233444444444432  2455 44556778888877  67777777776664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.60  E-value=0.49  Score=36.57  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=28.4

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          366 FSDMGDAKHMEYTFEQMHAEGM--KADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      ..+.|++++|.+.|+.+...-.  .-....-..|+.+|.+.+++++|...++..++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3455666666666666554311  112233444555555666666666666555554

>PRK11906 transcriptional regulator; Provisional

Probab=95.58  E-value=2  Score=40.33  Aligned_cols=79  Identities=9%  Similarity=-0.037  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      +|.++-++..+.+ .-|......+..+....++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444444443 2344444444444444555555555555555543 2233334444444444555555555555544


Q ss_pred             H
Q 010740          454 E  454 (502)
Q Consensus       454 ~  454 (502)
                      +
T Consensus       400 r  400 (458)
T PRK11906        400 Q  400 (458)
T ss_pred             c
Confidence            3

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.53  E-value=1.3  Score=37.52  Aligned_cols=54  Identities=15%  Similarity=0.257  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGKKRMYDKMSSV  343 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~  343 (502)
                      |-..|-.+.-..|+..|.+.++.--+.+   -+-+..+...|+.+|-. |+.+++.++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv  249 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV  249 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence            3344444555556666666665533221   12334455555555433 555554444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.26  E-value=1.3  Score=36.11  Aligned_cols=93  Identities=12%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAENVS--FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE  474 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  474 (502)
                      +...+...|++++|..-++.........+..  +--.|.+.....|.+++|+..++...+.++  .......-.+.+...
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k  172 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence            3456778888888888888766542222211  122355667788899999988888776543  233344556788889


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 010740          475 GMNDKVYALEQEKLQML  491 (502)
Q Consensus       475 g~~~~A~~~~~~~~~~~  491 (502)
                      |+.++|..-|+++++.+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            99999999999888875

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.22  E-value=1.2  Score=35.43  Aligned_cols=137  Identities=11%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH-
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL-  221 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-  221 (502)
                      ...|..-++ +.+.+..++|+.-|..+.+.|...-+. ..-.+.......|+...|+..|+++-....++.-..-...| 
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            334544444 345666777888888877776432221 22233445566788888888888876542221111111222 


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 010740          222 -IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT  281 (502)
Q Consensus       222 -l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  281 (502)
                       .-.+...|.++......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|.++....+
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~  198 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ  198 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence             223456777888877777776666555566666777777788888888888888766443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.19  E-value=0.056  Score=30.00  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .+|..+..+|...|++++|++.++++++..|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45777777888888888888888888877664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.19  E-value=0.93  Score=34.14  Aligned_cols=92  Identities=16%  Similarity=0.025  Sum_probs=65.7

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPE---LYTALLAAYCR  191 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~  191 (502)
                      ...+...|+.+.|++.|.....-  .+-....||.-..++.-+|+.++|++=+++.++..-..+..   .|..-...|..
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            34567788888888888887765  35567788888888888888888888888887763233332   23334455666


Q ss_pred             CCCHHHHHHHHHHhhcC
Q 010740          192 NSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~  208 (502)
                      .|+.+.|..-|+..-+.
T Consensus       128 ~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQL  144 (175)
T ss_pred             hCchHHHHHhHHHHHHh
Confidence            77888888777777664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=1.7  Score=36.84  Aligned_cols=208  Identities=12%  Similarity=0.073  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...|..-..+|....++++|...+.+..+- ...+...|. ..      ..++.|.-+.+++.+.   +.-+..|+--..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl---sEvvdl~eKAs~   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL---SEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence            345666667777788888888777766532 122222221 11      2235555555555542   223344555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHhc
Q 010740          224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES----ATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~  299 (502)
                      .|...|..+.|-..+++.-+.                ...-++++|++++.+...-    ....--...+...-..+.+.
T Consensus       100 lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            677777776666655554321                1122333344444332210    00000112223333445555


Q ss_pred             CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCC
Q 010740          300 GQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ---FPWTSSTYNNVIEAFSDMGD  371 (502)
Q Consensus       300 g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~  371 (502)
                      ..+++|-..+.+-...    .--++ -..|...|-.|.-..++..|...++.-.+.+   -+-+..+...|+.+| ..|+
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD  242 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD  242 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence            5555554444332110    00111 1234444445555566667766666533321   122455566666665 3455


Q ss_pred             HhHHHHHH
Q 010740          372 AKHMEYTF  379 (502)
Q Consensus       372 ~~~a~~~~  379 (502)
                      .+++..++
T Consensus       243 ~E~~~kvl  250 (308)
T KOG1585|consen  243 IEEIKKVL  250 (308)
T ss_pred             HHHHHHHH
Confidence            55554443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.13  E-value=3.4  Score=40.05  Aligned_cols=176  Identities=14%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----CCCHHH
Q 010740          128 LQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP------ELYTALLAAYCR----NSLIDE  197 (502)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~  197 (502)
                      .-+|+.+..-  +||   .+..++...+=.||-+.+++.+.+..+.+--..+      -.|..++..++.    ....+.
T Consensus       177 ~G~f~L~lSl--LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~  251 (468)
T PF10300_consen  177 FGLFNLVLSL--LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE  251 (468)
T ss_pred             HHHHHHHHHh--CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence            3445555443  233   4555666666666666666666665543211111      123333333332    334666


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTL-IKACVDAMRFELIETLYQDMDERS---VTPNTVTQNIVLGGYGKAGMFDQMERVL  273 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~~~~g~~~~a~~~~  273 (502)
                      |.++++.+.+.   -|+...|... ...+...|+.++|.+.|+......   .+.....+--+.-.+.-.++|++|.+.|
T Consensus       252 a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  252 AEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            77777776653   3454444322 334455667777777776544311   1122334445555666677777777777


Q ss_pred             HHHHHcCCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHH
Q 010740          274 SGMLESATCKPDVWTMNTIL-SVFANKGQV-------DMMERWYEKFR  313 (502)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~  313 (502)
                      ..+.+....  +...|.-+. .++...|+.       ++|.++|.++.
T Consensus       329 ~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  329 LRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            777654322  233333332 223345555       66777776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=95.09  E-value=2.5  Score=39.81  Aligned_cols=149  Identities=9%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             ChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740          159 QPELARKVFNEMVEE-GIEPT-PELYTALLAAYCR---------NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD  227 (502)
Q Consensus       159 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  227 (502)
                      ..+.|+.+|.+.... .+.|+ ...|..+..++..         .....+|.++-++..+.+  +.|......+..+..-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence            356788889988822 12343 4455544444332         233556777777777754  6677777777777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      .++++.+..+|++....+.. ...+|......+.-.|+.++|.+.+++.++-...+.........+..|+..+ .+.+++
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~  428 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK  428 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence            77888888888888776432 4455555555666788888888888886554322223333334444554443 455666


Q ss_pred             HHHH
Q 010740          308 WYEK  311 (502)
Q Consensus       308 ~~~~  311 (502)
                      +|-+
T Consensus       429 ~~~~  432 (458)
T PRK11906        429 LYYK  432 (458)
T ss_pred             HHhh
Confidence            6543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.08  E-value=0.09  Score=31.37  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM  467 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l  467 (502)
                      ++..+...|...|++++|+++|+++.+.... |...|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence            4555666666666666666666666665322 44444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.94  E-value=0.075  Score=29.40  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ..|..+...|.+.|++++|++.++++++..|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            35666777788888888888888888777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.78  E-value=3.5  Score=38.38  Aligned_cols=87  Identities=9%  Similarity=0.044  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010740           97 KLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIE  176 (502)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  176 (502)
                      +=++..+.+.....+..+++.+...|.+++..++++++..-  ++-=..+|..-+..-....++.....+|.+.+...  
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--  106 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--  106 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence            33333333444455677888888999999999999998764  34445577777777777788888888888887663  


Q ss_pred             CCHHHHHHHHH
Q 010740          177 PTPELYTALLA  187 (502)
Q Consensus       177 ~~~~~~~~l~~  187 (502)
                      .+...|...+.
T Consensus       107 l~ldLW~lYl~  117 (660)
T COG5107         107 LNLDLWMLYLE  117 (660)
T ss_pred             ccHhHHHHHHH
Confidence            34555544443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.75  E-value=3.8  Score=41.33  Aligned_cols=173  Identities=9%  Similarity=0.104  Sum_probs=80.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740          219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQN----IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS  294 (502)
Q Consensus       219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  294 (502)
                      ..-+..+.+...++.|..+-+   ..+.  +..+..    ...+.+.+.|++++|...|-+.+..  +.|.     .++.
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~  405 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIK  405 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHH
Confidence            334555555556666555432   2222  222222    2333344566666666666554321  2222     2334


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH
Q 010740          295 VFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  374 (502)
                      -|.......+...+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            44455555555666666666553 334444556666666666666555544333 1111  1112334444445555555


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740          375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR  415 (502)
Q Consensus       375 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (502)
                      |..+-.....     .......   .+-..+++++|++++.
T Consensus       482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~  514 (933)
T KOG2114|consen  482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYIS  514 (933)
T ss_pred             HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHh
Confidence            5444333221     1222222   2234566666666555

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=94.73  E-value=2  Score=37.67  Aligned_cols=140  Identities=7%  Similarity=0.064  Sum_probs=79.2

Q ss_pred             cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-CCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010740          157 SGQPELARKVFNEMVE-EGIEPTPELYTALLAAYCR-NSL-IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFEL  233 (502)
Q Consensus       157 ~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  233 (502)
                      ...+.+|+++|+..-. ..+--|..+...+++.... .+. ...-.++.+-+....+-.++..+...++..+++.+++..
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3345566666663221 2234566666666666655 221 222223333333322235666667777777777777777


Q ss_pred             HHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----HHcCCCCCCHHHHHHHHHHH
Q 010740          234 IETLYQDMDER-SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM----LESATCKPDVWTMNTILSVF  296 (502)
Q Consensus       234 a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~  296 (502)
                      ..++++..... +..-|...|..+|+.....|+..-..++.++-    +++.++..+...-..+-..+
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            77777776554 45557777777777777777777666666542    23445555555544444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=5.7  Score=39.59  Aligned_cols=324  Identities=10%  Similarity=0.070  Sum_probs=179.3

Q ss_pred             HHHhcCChHHHHHHHHHH--------HHcCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740          153 LLGKSGQPELARKVFNEM--------VEEGIEPTPELYTA-----LLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS  219 (502)
Q Consensus       153 ~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (502)
                      ++.+..++++-..+...+        ...|++.+..-|..     ++.-+...+.+..|+++-..+...  ...+...|.
T Consensus       398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p--~~~~~~Vl~  475 (829)
T KOG2280|consen  398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP--ESQGDRVLL  475 (829)
T ss_pred             cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc--cccccHHHH
Confidence            344555666655554443        23477777766654     466777888999999998877542  112256666


Q ss_pred             HHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---CCHHHHHHHH
Q 010740          220 TLIKACVDAMR---FELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCK---PDVWTMNTIL  293 (502)
Q Consensus       220 ~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~  293 (502)
                      ....-+.+..+   -+.+..+-+++... . .+...|..+.+.....|+.+-|..+++.=.......   .+..-+...+
T Consensus       476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL  553 (829)
T KOG2280|consen  476 EWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLAL  553 (829)
T ss_pred             HHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHH
Confidence            67666666532   23333333333332 2 345678888888888999999998876431111000   1222345555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHH--------HHccCcHHHHHHHHH--HHHHcC-
Q 010740          294 SVFANKGQVDMMERWYEKFRNF-----------GIDPETRTFNILIGA--------YGKKRMYDKMSSVME--YMRKLQ-  351 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~--~~~~~~-  351 (502)
                      .-+...|+.+-...++-.+...           ..+.....|..+++-        +.+.++-..+...|.  ...+.. 
T Consensus       554 ~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~  633 (829)
T KOG2280|consen  554 KKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET  633 (829)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh
Confidence            6666777777666665554431           112222233333221        011111111111111  100000 


Q ss_pred             CCCChHHHHHHHHHHHhcCCHh----------HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          352 FPWTSSTYNNVIEAFSDMGDAK----------HMEYTFEQMH-AEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       352 ~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      +.+-..........+.+.....          .-+.+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+  
T Consensus       634 ~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--  711 (829)
T KOG2280|consen  634 IEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--  711 (829)
T ss_pred             hcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence            1111122233334444433311          1122222222 22333344456666777788899999988766543  


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                        -|+...|-.-+.+++..+++++-+++-+.++.      +.=|.-.+.+|.+.|+.++|.+++.+..++
T Consensus       712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l  773 (829)
T KOG2280|consen  712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL  773 (829)
T ss_pred             --CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence              47888888889999999999998777666552      333555678899999999999988776544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.40  E-value=6  Score=39.41  Aligned_cols=180  Identities=12%  Similarity=0.087  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHh
Q 010740          124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVL-----LGKSGQPELARKVFNEMVE-------EGIEPTPELYTALLAAYCR  191 (502)
Q Consensus       124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~  191 (502)
                      ...|.++++...+.|    +......+..+     ++...+++.|...|..+.+       .|   .......+..+|.+
T Consensus       228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence            567888888888876    33333333322     4466789999999998876       44   23355566666666


Q ss_pred             CC-----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--cc
Q 010740          192 NS-----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG--KA  263 (502)
Q Consensus       192 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~  263 (502)
                      ..     +.+.|+.++.+..+.+  .|+....-..+.-... ..+...|.++|....+.|.. ....+..++...+  ..
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence            43     5677888888877653  3554443222222222 24567888888888777654 2222222222222  23


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG  316 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (502)
                      .+.+.|..++.+..+.+  .|....-...+..+.. ++++.+.-.+..+.+.|
T Consensus       378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            46677777777775542  1221111122222223 55665555555555444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.34  E-value=1.7  Score=32.91  Aligned_cols=62  Identities=10%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740          325 NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM  387 (502)
Q Consensus       325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~  387 (502)
                      ...+..+.+.|+.+...+++..+.+ +-.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3334444455555555555555443 2223445555555555555555555555555555543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.34  E-value=0.67  Score=40.64  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFSIMT  468 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~~l~  468 (502)
                      +..++..+...|+++.+...++...... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+.....
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            3344444455555555555555544442 34445555555555555555555555554432     35555555554444


Q ss_pred             HH
Q 010740          469 EA  470 (502)
Q Consensus       469 ~~  470 (502)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            44

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.93  E-value=7.5  Score=38.76  Aligned_cols=47  Identities=9%  Similarity=-0.053  Sum_probs=23.1

Q ss_pred             hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHH
Q 010740          227 DAMRFELIETLYQDMDE-------RSVTPNTVTQNIVLGGYGKAG-----MFDQMERVLSGM  276 (502)
Q Consensus       227 ~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~  276 (502)
                      ...+.+.|..+|+.+.+       .|   .......+..+|.+..     +.+.|..++...
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a  319 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA  319 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence            34556666666666554       33   2223444444454432     344455555555

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.80  E-value=1.9  Score=37.95  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc----CCCCCCCHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT----LPNCQPDVYTYS  219 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~  219 (502)
                      ..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+    .-|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3467778888888888888888888887765 56777888888888888888888888777643    236777777776


Q ss_pred             HHHHHH
Q 010740          220 TLIKAC  225 (502)
Q Consensus       220 ~ll~~~  225 (502)
                      ......
T Consensus       232 ~y~~~~  237 (280)
T COG3629         232 LYEEIL  237 (280)
T ss_pred             HHHHHh
Confidence            666663

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.77  E-value=2.9  Score=33.56  Aligned_cols=133  Identities=16%  Similarity=0.132  Sum_probs=62.0

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          165 KVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      +.+..+.+.+++|+...+..++..+.+.|++....+++.-     ++-+|.......+-.+.  +.+..+.++=-+|.++
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            3444445556667777777777777777766554444432     23344433333332221  2222333333333222


Q ss_pred             CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740          245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFR  313 (502)
Q Consensus       245 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (502)
                          =...+..++..+...|++-+|+++.+.....     +......++.+..+.+|...-..+|+-..
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                0012445555666666666666666554111     11222334555555555544444444333

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.69  E-value=11  Score=39.89  Aligned_cols=79  Identities=5%  Similarity=-0.008  Sum_probs=39.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFGIDPETR--TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM  369 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  369 (502)
                      .+.+|..+|+|.+|+.+..++..   ..+..  +-..|+.-+...+++-+|-++..+....        ..-.+..+++.
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence            34555556666666665554432   11111  1244555555566666666655544432        12233445555


Q ss_pred             CCHhHHHHHHHH
Q 010740          370 GDAKHMEYTFEQ  381 (502)
Q Consensus       370 ~~~~~a~~~~~~  381 (502)
                      ..|++|.++-..
T Consensus      1040 ~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1040 KEWEEALRVASK 1051 (1265)
T ss_pred             hHHHHHHHHHHh
Confidence            566666655543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=3.1  Score=33.30  Aligned_cols=122  Identities=7%  Similarity=0.071  Sum_probs=57.4

Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH--HHHHHHHhccCCh
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTV-TQ--NIVLGGYGKAGMF  266 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~--~~l~~~~~~~g~~  266 (502)
                      +.+..++|+.-|..+.+. |...- ....-.......+.|+...|...|+++-.....|-.. -.  ..-...+...|.+
T Consensus        70 ~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          70 QENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            445556666666666553 22111 1122223334455566666666666655443333221 00  0111224455666


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                      +......+.+- ..+-.-....-..|.-+-.+.|++.+|..+|..+..
T Consensus       149 ~dV~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            66665555552 222222333344555555566666666666666554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.49  E-value=4.3  Score=34.62  Aligned_cols=124  Identities=14%  Similarity=0.117  Sum_probs=60.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 010740          295 VFANKGQVDMMERWYEKFRNFGI--DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDA  372 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  372 (502)
                      .+...|+++.+...+.+......  ......+......+...++.+.+...+..............+..+...+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            34455555555555555433110  0112222222223444555555555555555442221244555555566666666


Q ss_pred             hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          373 KHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       373 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      +.+...+......  .|+ ...+..+...+...+..+.+...+......
T Consensus       219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6666666666553  222 233333344444555667776666666554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.44  E-value=8  Score=37.55  Aligned_cols=332  Identities=13%  Similarity=0.072  Sum_probs=169.9

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHH
Q 010740          123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC-RNSLIDEAFVT  201 (502)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~  201 (502)
                      +.+.+...++.+...  +|.-..-|......=.+.|..+.+.++|++-+. |++.+...|...+..+. ..|+.+...+.
T Consensus        60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~  136 (577)
T KOG1258|consen   60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL  136 (577)
T ss_pred             HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            335555555555543  233333556666666677777777777777664 45556666655554433 34666666667


Q ss_pred             HHHhhcCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---c------CChHHHHH
Q 010740          202 LNQMKTLPNCQ-PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK---A------GMFDQMER  271 (502)
Q Consensus       202 ~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~---~------g~~~~a~~  271 (502)
                      |+......|.. .....|...+.--...+++.....++++.++.    ....|+....-|.+   .      ...+++.+
T Consensus       137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~  212 (577)
T KOG1258|consen  137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ  212 (577)
T ss_pred             HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence            76666543332 23345666666666667777777777777664    22233322222211   1      11111111


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH-------HHccCcHHHHHH
Q 010740          272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPET--RTFNILIGA-------YGKKRMYDKMSS  342 (502)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-------~~~~g~~~~a~~  342 (502)
                      +-....++              ......+...+  .+=..+...+.+.+.  ...+.+-..       +-..........
T Consensus       213 l~~~~~~~--------------~~~~~~~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~  276 (577)
T KOG1258|consen  213 LRSDVAER--------------SKITHSQEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW  276 (577)
T ss_pred             HhhhHHhh--------------hhcccccChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence            11111100              00000111111  111111111111111  111111111       111122222222


Q ss_pred             HHHHHHHcC-------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740          343 VMEYMRKLQ-------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR  415 (502)
Q Consensus       343 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (502)
                      .|+.-.+.-       ..++..+|...+.--...|+.+.+.-+|++..-- +..=...|-..+.-....|+.+-|..++.
T Consensus       277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~  355 (577)
T KOG1258|consen  277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA  355 (577)
T ss_pred             hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence            333322221       1124568888888889999999999999887631 11122344445555555699999998888


Q ss_pred             HHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Q 010740          416 LASKLQIA--ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSE-TFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       416 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~  482 (502)
                      ...+.-++  |....+.+.+  .-..|+++.|..+++.+.+. + |+.. .-..-+....+.|..+.+..
T Consensus       356 ~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  356 RACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             hhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence            77765433  3333333332  34568999999999999986 3 5544 33334566778888888874

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.07  E-value=0.29  Score=26.99  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          462 ETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      .+|..+...|...|++++|.+.|+++++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566777778888888888888888877665

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.06  E-value=6.5  Score=35.37  Aligned_cols=133  Identities=11%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--cCC----HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCc
Q 010740          266 FDQMERVLSGMLESATCKPDVWTMNTILSVFAN--KGQ----VDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRM  336 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~  336 (502)
                      +++...+++.+. ..|++.+..+|-+.......  ..+    ...+..+|+.|.+...-   ++...+..++..  ..++
T Consensus        78 ~~~~~~~y~~L~-~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLK-EAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHH-HhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            344455666664 34677666666553333322  222    45688888888875422   444555555543  3333


Q ss_pred             ----HHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          337 ----YDKMSSVMEYMRKLQFPWTS--STYNNVIEAFSDMGD--AKHMEYTFEQMHAEGMKADTKTFCCLINGY  401 (502)
Q Consensus       337 ----~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  401 (502)
                          .+.+..+|+.+.+.|+..+-  .....++..+.....  ...+.++++.+.+.|+++....|..+.-..
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence                35566777777777765332  233333333222222  457788888888888888777766555433

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.98  E-value=11  Score=38.01  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ-------PELARKVFNEMVEE  173 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~  173 (502)
                      .+--+.+.|++++|.++.......  .......+...+..|....+       -+....-|.+..+.
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~  181 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN  181 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            555678899999999999555543  34455677777777766532       24556666666544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.92  E-value=8.2  Score=36.18  Aligned_cols=336  Identities=14%  Similarity=0.140  Sum_probs=176.8

Q ss_pred             HhhhcHHHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHH
Q 010740          119 VLKKQWFQALQVFEMLKEQ--PFYQP-----------KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGI----EPTPEL  181 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~  181 (502)
                      -+.+.+++|++.+....++  +.-+|           |...=+..+..+...|++.+++.+++++...=+    .-+..+
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            3678999999988766554  21111           111123567788899999999999988876533    367888


Q ss_pred             HHHHHHHHHhCC--------C-------HHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 010740          182 YTALLAAYCRNS--------L-------IDEAFVTLNQMKTLP-----NCQPDVYTYSTLIKACVDA--MRFELIETLYQ  239 (502)
Q Consensus       182 ~~~l~~~~~~~g--------~-------~~~a~~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~  239 (502)
                      |+.++-.+.+.=        .       ++-+.-+..+|...+     .+-|-...+..++....-.  .+..--.+++.
T Consensus       170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~  249 (549)
T PF07079_consen  170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE  249 (549)
T ss_pred             HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence            888665554421        1       112222222222110     1122223333333322211  11222233333


Q ss_pred             HHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          240 DMDERSVTPNTV-TQNIVLGGYGKAGMFDQMERVLSGMLESATCK----PDVWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       240 ~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                      ...+.-+.|+-. +...+...+.+  +.+++..+-+.+... .+.    .=..+|..++....+.++...|...+.-+..
T Consensus       250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~-~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS-KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            333334445433 22333333333  445555544444221 011    1234677777778888888877777766553


Q ss_pred             CCCCCCHH---------------------HHHH--------------------HHHH-------HHccCc-HHHHHHHHH
Q 010740          315 FGIDPETR---------------------TFNI--------------------LIGA-------YGKKRM-YDKMSSVME  345 (502)
Q Consensus       315 ~~~~~~~~---------------------~~~~--------------------l~~~-------~~~~g~-~~~a~~~~~  345 (502)
                      ..  |+..                     .++.                    |+..       +=+.|. -++|+++++
T Consensus       327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk  404 (549)
T PF07079_consen  327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK  404 (549)
T ss_pred             cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            21  1111                     1111                    0110       111232 566666666


Q ss_pred             HHHHcCCCCChHHHHHHHH----HHHh---cCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHH--HHHhcCChHHHHH
Q 010740          346 YMRKLQFPWTSSTYNNVIE----AFSD---MGDAKHMEYTFEQMHAEGMKADTK----TFCCLIN--GYANAGLFHKVIS  412 (502)
Q Consensus       346 ~~~~~~~~~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~--~~~~~g~~~~a~~  412 (502)
                      .+.+...- |...-|.+..    +|.+   ...+.+-..+-+-+.+.|+.|-..    .-+.|..  -+...|++.++.-
T Consensus       405 ~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~  483 (549)
T PF07079_consen  405 LILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL  483 (549)
T ss_pred             HHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            66654222 4433333322    2221   123344444445555667766332    3333333  2446888888877


Q ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740          413 SVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM  467 (502)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l  467 (502)
                      .-..+.+  +.|++.+|..+.-++....++++|..++..+     +|+..++++=
T Consensus       484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk  531 (549)
T PF07079_consen  484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK  531 (549)
T ss_pred             HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence            6666665  6789999999999999999999999999765     4677766643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.83  E-value=0.31  Score=27.49  Aligned_cols=26  Identities=12%  Similarity=0.047  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      +|..|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36677888888888888888888744

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.60  E-value=2.3  Score=34.89  Aligned_cols=95  Identities=11%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CC----hH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT--KTFCCLINGYANAGLFHKVISSVRLASKLQIA---EN----VS  427 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~----~~  427 (502)
                      ..+..+...|++.|+.+.|.+.|.++.+.-..+..  ..+-.+++.....+++..+...+.++...--.   .+    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34556666667777777777777776655433332  24555666666677777766666555443111   11    22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      +|..|.  +...+++.+|-+.|-...
T Consensus       117 ~~~gL~--~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLA--NLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHH--HHHhchHHHHHHHHHccC
Confidence            333333  345678888887776554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.56  E-value=2.3  Score=37.46  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      +.++++.++..-+..|+-||..+++.+|..+.+.+++.+|..+...|.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555544433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.27  E-value=2.8  Score=34.40  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVISACIKADDLMEMERVYKRMKEK---HCRPDSETFSI  466 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~p~~~~~~~  466 (502)
                      ..+..+...|.+.|+.+.|.+.|..+.+....+.  ..++-.++......|++..+...+.+....   |-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4677889999999999999999999988754443  455677888899999999999998877654   22122222112


Q ss_pred             HHH--HHHhcCCcHHHHHHHHHHHH
Q 010740          467 MTE--AYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       467 l~~--~~~~~g~~~~A~~~~~~~~~  489 (502)
                      ...  .+...+++.+|.+.|-+...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            222  34567889888888766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.08  E-value=2.2  Score=41.13  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=91.3

Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      -.|+++.|..++..+.+        ...+.++..+.+.|..++|+++-         +|....   .....+.|+++.|.
T Consensus       598 mrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~  657 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAF  657 (794)
T ss_pred             hhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHH
Confidence            34566666554443332        23445666666777777666542         222221   12345678888887


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      ++..+.       .+..-|..|..+..+.|++..|.+.|.....         |..|+-.+...|+.+....+-....+.
T Consensus       658 ~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~  721 (794)
T KOG0276|consen  658 DLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ  721 (794)
T ss_pred             HHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence            776655       2566788888888888888888888876653         445666667777766666555555555


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010740          351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQ  381 (502)
Q Consensus       351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  381 (502)
                      |..      |...-+|...|+++++.+++..
T Consensus       722 g~~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  722 GKN------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence            443      3333455667788877777654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.95  E-value=1.7  Score=40.61  Aligned_cols=90  Identities=14%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 010740          402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  481 (502)
                      ...|+++.+.+.+....+. +.....+...+++...+.|++++|...-+.|....++ +..............|-+|++.
T Consensus       334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~  411 (831)
T PRK15180        334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY  411 (831)
T ss_pred             HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence            3444444444444333221 1222333344444444444444444444444443333 3333322222333344444444


Q ss_pred             HHHHHHHHhhhh
Q 010740          482 ALEQEKLQMLLE  493 (502)
Q Consensus       482 ~~~~~~~~~~~~  493 (502)
                      -.|++.....++
T Consensus       412 ~~wk~~~~~~~~  423 (831)
T PRK15180        412 HYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHhccCCh
Confidence            444444444433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=2.3  Score=37.54  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010740          245 SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATC--KPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETR  322 (502)
Q Consensus       245 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  322 (502)
                      |......+...++..-....+++.++..+-++......  .++. +-.+.++. +..-+.++++.++..=++.|+.||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence            44444455555555555566677777777666432110  1111 11112222 23345667777777667777778888


Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      +++.+++.+.+.+++.+|..+.-.|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888888888888877777776665544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.82  E-value=5.5  Score=31.64  Aligned_cols=50  Identities=14%  Similarity=0.075  Sum_probs=22.4

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740          156 KSGQPELARKVFNEMVEEGIEPTPELY-TALLAAYCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       156 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~  207 (502)
                      +.++.+.+..+++-+.-.  .|..... ..-...++..|++.+|+.+|+.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            444555555555554433  2322221 1222334455555555555555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.75  E-value=5.6  Score=31.60  Aligned_cols=94  Identities=16%  Similarity=-0.028  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      ..+..++..-...++.+++..+++.+.--   .|... .-..-...+...|++.+|..+|+.+...  .|....-..|+.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA   85 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence            55666777778889999999999988774   44433 3333455677999999999999998776  344444455555


Q ss_pred             HHHhCCCHHHHHHHHHHhhc
Q 010740          188 AYCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~  207 (502)
                      .|.....-..-..+-+++.+
T Consensus        86 ~CL~~~~D~~Wr~~A~evle  105 (160)
T PF09613_consen   86 LCLYALGDPSWRRYADEVLE  105 (160)
T ss_pred             HHHHHcCChHHHHHHHHHHh
Confidence            55444332333333344444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.75  E-value=0.26  Score=27.37  Aligned_cols=20  Identities=15%  Similarity=0.449  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHhcCCcHHH
Q 010740          461 SETFSIMTEAYAKEGMNDKV  480 (502)
Q Consensus       461 ~~~~~~l~~~~~~~g~~~~A  480 (502)
                      ...|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33444444444444444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.72  E-value=13  Score=35.59  Aligned_cols=183  Identities=10%  Similarity=0.088  Sum_probs=130.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010740          140 YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYS  219 (502)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  219 (502)
                      .+.|.....+++..++......-...+..+|+..|  -+-..|..++.+|... .-++-..+++++.+..  --|+..-.
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R  136 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR  136 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence            35677788899999999999999999999999875  6788899999999988 5577788888888742  33444444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010740          220 TLIKACVDAMRFELIETLYQDMDERSVT-----PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILS  294 (502)
Q Consensus       220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  294 (502)
                      .|...| ..++.+.+..+|......-++     .-...|..+...-  ..+.+..+.+...+....|...-.+.+.-+-.
T Consensus       137 eLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~  213 (711)
T COG1747         137 ELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK  213 (711)
T ss_pred             HHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            444444 448888888888887765222     1123555555422  35677788888888766666666777777778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740          295 VFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY  331 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  331 (502)
                      -|....++++|++++.-+.+.+ ..|...-..++..+
T Consensus       214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            8888999999999998777654 45555554554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.67  E-value=17  Score=37.01  Aligned_cols=56  Identities=11%  Similarity=0.165  Sum_probs=38.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      -++..+.+..+.+.+..+.+..-+.    ++..|..++..+++.+..+.-.+...+.+..
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~  765 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEA  765 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence            4555666667777766666655433    7778888888888888777666666665553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.66  E-value=0.33  Score=26.42  Aligned_cols=28  Identities=18%  Similarity=0.186  Sum_probs=17.7

Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          466 IMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .+..++.+.|++++|.+.|++.++..|+
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455666666677777777666666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.57  E-value=0.5  Score=27.47  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          461 SETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ..+++.|...|...|++++|..++++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3467777778888888888888888877653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.44  E-value=0.26  Score=27.41  Aligned_cols=24  Identities=25%  Similarity=0.173  Sum_probs=13.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELAR  164 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~  164 (502)
                      |-+..+|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344555666666666666655553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.22  E-value=4.2  Score=29.22  Aligned_cols=41  Identities=15%  Similarity=0.297  Sum_probs=18.7

Q ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +..+....+.|.+.+..+.+++|.+.+++.-|.++|+..+.
T Consensus        33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33333444455555555555555555555555555555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.17  E-value=8.1  Score=32.34  Aligned_cols=64  Identities=16%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      +.+||-+.--+...|+++.|.+.|+...+.+  +....+...-.-++.-.|++..|.+-+...-+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence            4555655555566666666666666665532  222222211111222345555555555554443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.11  E-value=19  Score=37.53  Aligned_cols=115  Identities=10%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCcH--HHHHHHHHHHHHcCCCCChHHHHH-
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFG---IDPETRTFNILIGAYGKKRMY--DKMSSVMEYMRKLQFPWTSSTYNN-  361 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~-  361 (502)
                      -|..|+..|...|+.++|++++.+.....   ...-...+..++..+.+.+..  +.++++-+...+....-....+.. 
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            47778888888888888888888776521   111122233344444444443  555555555544433322222222 


Q ss_pred             -----------HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          362 -----------VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       362 -----------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                                 .+-.|......+-+..+++.+....-.++....+.++..|+
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~  637 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL  637 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence                       11123344445555566666655444445555555555554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.11  E-value=4.3  Score=39.32  Aligned_cols=150  Identities=12%  Similarity=0.051  Sum_probs=97.2

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 010740          262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  341 (502)
                      -.|+++.|..++..+.        ...-+.+...+.+.|-.++|+++-         +|..-   -.....+.|+++.|.
T Consensus       598 mrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~  657 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF  657 (794)
T ss_pred             hhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence            3455555555443331        223445556666777777766542         22211   122345678888888


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      ++..+..      +..-|..|.++..+.+++..|.+.|.+...         |..|+-.+...|+-+....+-....+.|
T Consensus       658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            8765543      667799999999999999999999887664         4567777788888776666666666665


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740          422 IAENVSFYNAVISACIKADDLMEMERVYKRM  452 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  452 (502)
                       ..|     .-..+|...|+++++.+++..-
T Consensus       723 -~~N-----~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  723 -KNN-----LAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             -ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence             333     3344566789999988877654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.04  E-value=1.7  Score=30.79  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          160 PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       160 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      .=++++-++.+...++.|++.+..+.+++|.+.+++..|+++|+-++..  +..+...|..++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l   83 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence            3345556666666666777777777777777777777777777766532  122334455444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.60  E-value=3.9  Score=33.58  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q 010740          364 EAFSDMGDAKHMEYTFEQMHAEGMKAD-----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK  438 (502)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  438 (502)
                      .-+...|++++|..-|...++. +++.     ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence            3467889999999999888875 2222     2345555667778888888888887777765 2233333333557888


Q ss_pred             cCCHHHHHHHHHHHHHCC
Q 010740          439 ADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       439 ~g~~~~a~~~~~~~~~~g  456 (502)
                      ...+++|++-|+.+.+..
T Consensus       181 ~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESD  198 (271)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence            888888988888888863

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.55  E-value=16  Score=34.86  Aligned_cols=180  Identities=11%  Similarity=0.083  Sum_probs=129.1

Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010740          176 EPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNI  255 (502)
Q Consensus       176 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  255 (502)
                      +.|.....+++..+..+....-...+-.+|...   ..+...|..++.+|... ..+.-..+++++.+..+. |+..-..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re  137 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE  137 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence            456667778889998888888888898999875   36778899999999988 668888999998887654 5555556


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcCCCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESATCKP---D---VWTMNTILSVFANKGQVDMMERWYEKFRNF-GIDPETRTFNILI  328 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~  328 (502)
                      |+..|-+ ++...+...|..++.+.  -|   +   ...|.-+...  -..+.+..+.+..++... |...-...+..+-
T Consensus       138 La~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~  212 (711)
T COG1747         138 LADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY  212 (711)
T ss_pred             HHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            6666655 88888989998887642  22   1   1234444432  145677777777777653 4444455667777


Q ss_pred             HHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 010740          329 GAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAF  366 (502)
Q Consensus       329 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  366 (502)
                      ..|....++++|++++..+.+.+-+ |...-..++..+
T Consensus       213 ~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l  249 (711)
T COG1747         213 KKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL  249 (711)
T ss_pred             HHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence            8888999999999999988887654 555555555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.89  E-value=16  Score=33.83  Aligned_cols=65  Identities=8%  Similarity=-0.028  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP---ETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      ...+|..+...+.+.|.++.|...+..+...+...   ...+.-.-++..-..|+..+|...++...+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567777788888888888888888777643111   233444445555666777888877777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK09687 putative lyase; Provisional

Probab=89.77  E-value=14  Score=32.96  Aligned_cols=234  Identities=13%  Similarity=0.052  Sum_probs=127.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHhhcCCCCCCCHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI----DEAFVTLNQMKTLPNCQPDVY  216 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~  216 (502)
                      .+|.......+..+...|..+ +...+..+.+   .+|...-...+.++...|+.    +++...+..+...   .++..
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~  106 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC  106 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence            346666777777777777543 3333333433   35666667777777777763    4677777766332   36665


Q ss_pred             HHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010740          217 TYSTLIKACVDAMRF-----ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT  291 (502)
Q Consensus       217 ~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  291 (502)
                      .-...+.++...+..     ..+...+.....   .++..+-...+.++++.++ ..+...+-.+++    .++...-..
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~  178 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNW  178 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHH
Confidence            555555555554321     122333322222   2355566666777777775 455666666654    234444444


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740          292 ILSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG  370 (502)
Q Consensus       292 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  370 (502)
                      .+.++.+.+ +...+...+..+..   .++..+-...+.++.+.|+. .+...+-...+.+   +  .....+.++...|
T Consensus       179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig  249 (280)
T PRK09687        179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence            555555543 23455555555553   44566666677777777763 4444444444432   1  2335566666666


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGY  401 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  401 (502)
                      +. +|...+..+.+.  .||...-...+.+|
T Consensus       250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             CH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            64 566666666653  34555444444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.65  E-value=3.2  Score=29.83  Aligned_cols=60  Identities=5%  Similarity=0.116  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740          374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS  434 (502)
Q Consensus       374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  434 (502)
                      +..+-++.+...++.|++....+.+++|.+.+++..|.++++-++.. +.+...+|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            45566666666677788888888888888888888888888776654 2333336666553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.63  E-value=25  Score=35.61  Aligned_cols=43  Identities=26%  Similarity=0.243  Sum_probs=24.9

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740          184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA  228 (502)
Q Consensus       184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  228 (502)
                      .+|--|.++|++++|.++......  ........+...+..|...
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence            345556778888888888755544  2334444556666666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.60  E-value=19  Score=34.11  Aligned_cols=125  Identities=9%  Similarity=0.029  Sum_probs=88.2

Q ss_pred             HHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH
Q 010740          258 GGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY  337 (502)
Q Consensus       258 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  337 (502)
                      .--...|+...|-+-+...+....-.|+.......  .....|+++.+...+..... -+.....+...++....+.|++
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~  373 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARW  373 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhH
Confidence            33445677777666555555554445555544444  45688999999988876654 2345667888899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740          338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG  386 (502)
Q Consensus       338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  386 (502)
                      +.|...-..|....+. ++.........--..|-++++...|+++....
T Consensus       374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            9999998888887776 66665555555566788899999999887653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.47  E-value=1.1  Score=24.64  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +|..+..+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555566666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.42  E-value=3  Score=34.74  Aligned_cols=77  Identities=19%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEG--IEPTPELYTALLA  187 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~  187 (502)
                      ++...++.+.+.++.++|+...+.-.+..  +.|...-..+++.++-.|++++|..-++..-...  ..+-..+|..+|.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34456677788899999999887655542  5566778889999999999999988777665431  2344566777776


Q ss_pred             H
Q 010740          188 A  188 (502)
Q Consensus       188 ~  188 (502)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            5

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.33  E-value=10  Score=30.59  Aligned_cols=31  Identities=10%  Similarity=0.297  Sum_probs=14.5

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740          308 WYEKFRNFGIDPETRTFNILIGAYGKKRMYD  338 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  338 (502)
                      +++.+.+.+++++...+..+++.+.+.|++.
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            3334444444454445555555555544433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=89.22  E-value=12  Score=31.36  Aligned_cols=179  Identities=12%  Similarity=0.011  Sum_probs=95.5

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740          122 KQWFQALQVFEMLKEQPFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV  200 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  200 (502)
                      |-+.-|.--|......   .|+ +.+||.|.-.+...|+++.|.+.|+...+.+. -...+...-.-++.-.|++.-|.+
T Consensus        79 GL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~  154 (297)
T COG4785          79 GLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQD  154 (297)
T ss_pred             hHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHH
Confidence            4444444444444443   344 56899999999999999999999999998752 223333333334446789999988


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740          201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLY-QDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES  279 (502)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  279 (502)
                      -|.+.-+.+.-.|=...|--+.   -..-++.+|..-+ ++....    |..-|...|-.|.- |++. .+.+++.+...
T Consensus       155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~  225 (297)
T COG4785         155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD  225 (297)
T ss_pred             HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh
Confidence            7777766432222222333222   2234555555433 333332    44444433333221 1111 12333333221


Q ss_pred             CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          280 ATCKPD-------VWTMNTILSVFANKGQVDMMERWYEKFRNF  315 (502)
Q Consensus       280 ~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (502)
                      .  ..+       ..+|--+.+.+...|+.++|..+|+-.+..
T Consensus       226 a--~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         226 A--TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             c--cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            1  111       234555666666677777777777665543

>PRK11619 lytic murein transglycosylase; Provisional

Probab=89.22  E-value=28  Score=35.48  Aligned_cols=275  Identities=9%  Similarity=0.042  Sum_probs=127.8

Q ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740           90 PIKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNE  169 (502)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  169 (502)
                      ...++...+...++.......-...+..+.+.+++++.+.++..      .+.+...-.....+....|+.++|......
T Consensus        81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~  154 (644)
T PRK11619         81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKE  154 (644)
T ss_pred             CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566666666444333323333345556677888877773322      244556667777888888888777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHhhcCCCCCCCHHHHHHHHHHH-----------H-hcCCHHHHH
Q 010740          170 MVEEGIEPTPELYTALLAAYCRNSLIDEAF--VTLNQMKTLPNCQPDVYTYSTLIKAC-----------V-DAMRFELIE  235 (502)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~~~~~~~~~~~~~ll~~~-----------~-~~~~~~~a~  235 (502)
                      +-..| ...+..++.++..+.+.|.+....  +-++.+...    .+...-..++..+           . -..+...+.
T Consensus       155 lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~----~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~  229 (644)
T PRK11619        155 LWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKA----GNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVE  229 (644)
T ss_pred             HhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHH
Confidence            66555 345666677777776555433321  111111111    1111111111111           0 001111111


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740          236 TLYQDMDERSVTPNTVTQNIVLGGY--GKAGMFDQMERVLSGMLESATCKPDV--WTMNTILSVFANKGQVDMMERWYEK  311 (502)
Q Consensus       236 ~~~~~~~~~g~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~  311 (502)
                      .++..     +.++...-..++.++  ....+.+.|..++..........+..  ..+..+.......+...++..+++.
T Consensus       230 ~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~  304 (644)
T PRK11619        230 TFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDD  304 (644)
T ss_pred             HHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHh
Confidence            11111     112221111111111  12345577777777664433332221  1223333222232224455555554


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740          312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH  383 (502)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  383 (502)
                      ....  ..+......-+....+.++++.+...+..|....-. ...-.--+.+++...|+.++|...|+.+.
T Consensus       305 ~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        305 VIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             cccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3322  123333444444444666776666666665443221 33333345555555677777777776653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.88  E-value=9.7  Score=29.79  Aligned_cols=51  Identities=18%  Similarity=0.083  Sum_probs=25.7

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740          156 KSGQPELARKVFNEMVEEGIEPTPE-LYTALLAAYCRNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       156 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~  208 (502)
                      ..++++++..+++.|.-.  .|+.. .-..-...++..|++++|+.+|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            355566666666655543  23321 1122233445566666666666666553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.54  E-value=55  Score=38.04  Aligned_cols=321  Identities=12%  Similarity=0.026  Sum_probs=157.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          149 KLLVLLGKSGQPELARKVFNEM----VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       149 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      .+..+-.+++.+.+|...++.-    .+.  .-....|..+...|+..+++|....+...-..    .|+   ...-+..
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS---LYQQILE 1458 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc---HHHHHHH
Confidence            3445566778888888888873    221  11233444455588888888887777664222    122   2234445


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHH
Q 010740          225 CVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNT-ILSVFANKGQVD  303 (502)
Q Consensus       225 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~  303 (502)
                      ....|++..|...|+.+.+.+.. ...+++.++......|.++.+.-..+.....  ..+....++. =+.+--+.+++|
T Consensus      1459 ~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred             HHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchh
Confidence            56678888899999888876432 3667777777777777777777665555332  1222222322 233445666777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHH--HHHHHHcc--CcHHHHHHHHHHHHHcCC--------C-CChHHHHHHHHHHHhcC
Q 010740          304 MMERWYEKFRNFGIDPETRTFNI--LIGAYGKK--RMYDKMSSVMEYMRKLQF--------P-WTSSTYNNVIEAFSDMG  370 (502)
Q Consensus       304 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~  370 (502)
                      .......   ..    +..+|..  +.....+.  .+.-.-.+..+.+.+.-+        . .-...|..++....-..
T Consensus      1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred             hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence            6665554   11    1112211  22222221  111111122222222211        1 01133444443332211


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhcCCCC-----ChHHHHHHHHHHHHcCCHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV-RLASKLQIAE-----NVSFYNAVISACIKADDLME  444 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~  444 (502)
                      --.....+.+.-......-+..-|-.-+.--....+..+-+--+ +.+......+     -..+|-...+...+.|.++.
T Consensus      1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred             HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence            11111111100000001111111211221111111111111111 1122221121     24567788888888999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      |...+-...+.+   -+..+--....+.+.|+...|+.++++.+...
T Consensus      1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            988777666654   23445556777889999999999999988654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.10  E-value=1.5  Score=25.36  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          427 SFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       427 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677788888888888888888887764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.57  E-value=8.2  Score=32.01  Aligned_cols=79  Identities=16%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHhcCCHH
Q 010740          155 GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP--NCQPDVYTYSTLIKACVDAMRFE  232 (502)
Q Consensus       155 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~  232 (502)
                      .+.| -+.|++.|-.+...+.--++.....|...|. ..+.++++.++.+..+..  +-.+|+..+..|+..+.+.++++
T Consensus       118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3444 4678888989988876666666666666555 678899999998876542  23678999999999999999999


Q ss_pred             HHH
Q 010740          233 LIE  235 (502)
Q Consensus       233 ~a~  235 (502)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.17  E-value=2.1  Score=23.33  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=11.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVE  172 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~  172 (502)
                      |..+...+...|++++|++.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.83  E-value=12  Score=31.03  Aligned_cols=78  Identities=17%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCh
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER---SVTPNTVTQNIVLGGYGKAGMF  266 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~l~~~~~~~g~~  266 (502)
                      .+.|+ ++|.+.|-.+...+ .--++.....|...| ...+.+++.+++....+.   +-.+|...+..|+..|.+.|++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            34454 78888888888763 334555555555544 477899999999887753   3467899999999999999999


Q ss_pred             HHHH
Q 010740          267 DQME  270 (502)
Q Consensus       267 ~~a~  270 (502)
                      +.|-
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            9874

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.57  E-value=0.2  Score=39.46  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC
Q 010740          361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD  440 (502)
Q Consensus       361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  440 (502)
                      .++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++.       .+..-...++..|.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence            34555666677777777777777665555666777777777777666666666551       11122235566666777


Q ss_pred             CHHHHHHHHHHHH
Q 010740          441 DLMEMERVYKRMK  453 (502)
Q Consensus       441 ~~~~a~~~~~~~~  453 (502)
                      .++++..++.++.
T Consensus        85 l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   85 LYEEAVYLYSKLG   97 (143)
T ss_dssp             SHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHcc
Confidence            7777766666543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.46  E-value=8.7  Score=33.72  Aligned_cols=59  Identities=12%  Similarity=0.039  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM  205 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  205 (502)
                      +++.....|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|..-++++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            45556677888888888888888888775 667788888888888888866666555554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.06  E-value=18  Score=30.44  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Q 010740          360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ--IAENVSFYNAVISACI  437 (502)
Q Consensus       360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~  437 (502)
                      +..++.+.+.+.+.+++...++-++.+ +.|..+-..+++.++-.|++++|..-++..-...  ..+....|..+|.+-.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea   83 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA   83 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            444566677778888888777766652 2344556677888888888888887776655532  2334555666554421


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCC-CHHHHHH-HHHHH--HhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740          438 KADDLMEMERVYKRMKEKHCRP-DSETFSI-MTEAY--AKEGMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~-l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                      ..      .++|.-=..-|+.- ....|.. +..+.  ...|.-+.+..+-+.+++..+...|+|.
T Consensus        84 ~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~  143 (273)
T COG4455          84 AR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHAD  143 (273)
T ss_pred             HH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccC
Confidence            11      11222111112211 2233443 33333  2334555677777888888888888865

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.96  E-value=10  Score=27.01  Aligned_cols=45  Identities=4%  Similarity=0.110  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      ++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444333

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.84  E-value=15  Score=28.77  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEG  174 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  174 (502)
                      ..+..++..-...++.+++..+++.+.--   .|+.. .-..-...+...|++++|..+|+++.+.+
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            45556666666789999999999988764   44433 22333455678999999999999998764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.47  E-value=24  Score=30.71  Aligned_cols=203  Identities=15%  Similarity=0.143  Sum_probs=111.2

Q ss_pred             CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHc---C-CC
Q 010740          211 CQPDVYTYSTLIKA-CVDAMRFELIETLYQDMDERSVTPNTV---TQNIVLGGYGKAGMFDQMERVLSGMLES---A-TC  282 (502)
Q Consensus       211 ~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~  282 (502)
                      ..||+..=|..-.. -.+..++++|+.-|++..+....-...   ....++..+.+.|++++..+.+.+++.-   . .-
T Consensus        22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr  101 (440)
T KOG1464|consen   22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR  101 (440)
T ss_pred             CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence            35555443332221 123457788888888877653332333   3344677788888888888888777531   0 00


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---
Q 010740          283 KPDVWTMNTILSVFANKGQVDMMERWYEKFRNF-----GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW---  354 (502)
Q Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---  354 (502)
                      .-+..+.|.++.......+.+-...+|+.-.+.     +-+.--.|-..|...|...|.+.+..++++++....-.-   
T Consensus       102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe  181 (440)
T KOG1464|consen  102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE  181 (440)
T ss_pred             cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence            123445666666666666666666665543321     111112233556667777777777777777775432110   


Q ss_pred             --------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 010740          355 --------TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-MKADTKTFCCLINGY-----ANAGLFHKVISSV  414 (502)
Q Consensus       355 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~  414 (502)
                              -...|..-|..|....+-.....+|++..... --|.+... .+|+-|     .+.|.+++|..-|
T Consensus       182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF  254 (440)
T KOG1464|consen  182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF  254 (440)
T ss_pred             hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence                    12456666777777777777777777665332 23333332 333333     3456676665433

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]

Probab=85.40  E-value=26  Score=31.11  Aligned_cols=17  Identities=12%  Similarity=0.108  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHcCCHHH
Q 010740          428 FYNAVISACIKADDLME  444 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~  444 (502)
                      .|..|+.+++..|+.+-
T Consensus       323 ~yaPLL~af~s~g~sEL  339 (412)
T KOG2297|consen  323 QYAPLLAAFCSQGQSEL  339 (412)
T ss_pred             hhhHHHHHHhcCChHHH
Confidence            45556666666665443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.30  E-value=49  Score=34.22  Aligned_cols=271  Identities=13%  Similarity=-0.003  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhC----CC---------CCCCHHHHH----HHH--HHHHhcCChHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQ----PF---------YQPKEGTYM----KLL--VLLGKSGQPELARKVFNEMV  171 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~~~~~----~l~--~~~~~~g~~~~a~~~~~~~~  171 (502)
                      ...+|......|+++.|..+++....+    +.         .-|+....+    .++  -......++++|..+++++.
T Consensus       363 ~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~  442 (894)
T COG2909         363 PSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLE  442 (894)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            344566666778888887777654111    10         011111111    122  23345677888888877766


Q ss_pred             HcCCCCCH-------HHHHHHH-HHHHhCCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740          172 EEGIEPTP-------ELYTALL-AAYCRNSLIDEAFVTLNQMKTL---PNCQPDVYTYSTLIKACVDAMRFELIETLYQD  240 (502)
Q Consensus       172 ~~~~~~~~-------~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  240 (502)
                      ..--.|+.       ..++.+- ......|++++|.++.+.....   ....+....+..+..+..-.|++++|..+.++
T Consensus       443 ~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~  522 (894)
T COG2909         443 HFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQ  522 (894)
T ss_pred             HHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence            54212221       1223222 2233467777777777665442   11233455566677777778888888877776


Q ss_pred             HHhCCCCCCHHHHHHHH-----HHHhccCC--hHHHHHHHHHHHHcCCC-C----CCHHHHHHHHHHHHhc-CCHHHHHH
Q 010740          241 MDERSVTPNTVTQNIVL-----GGYGKAGM--FDQMERVLSGMLESATC-K----PDVWTMNTILSVFANK-GQVDMMER  307 (502)
Q Consensus       241 ~~~~g~~~~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~~-g~~~~a~~  307 (502)
                      ..+..-.-+...+..+.     ..+...|+  +.+.+..|......... +    +-...+..++.++.+. +...++..
T Consensus       523 a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~  602 (894)
T COG2909         523 AEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARL  602 (894)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhh
Confidence            65532222333332222     22444553  22333333333221100 1    1223344444444441 11122222


Q ss_pred             HHHHHHhCCCCCCHHHH--HHHHHHHHccCcHHHHHHHHHHHHHcCCCCC----hHHHHHHHH--HHHhcCCHhHHHHHH
Q 010740          308 WYEKFRNFGIDPETRTF--NILIGAYGKKRMYDKMSSVMEYMRKLQFPWT----SSTYNNVIE--AFSDMGDAKHMEYTF  379 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~--~~~~~~~~~~a~~~~  379 (502)
                      .++.-......+-...+  ..|+..+...|+.++|...++++......++    -..-...+.  .....|+.+.+....
T Consensus       603 ~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l  682 (894)
T COG2909         603 GIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWL  682 (894)
T ss_pred             cchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHH
Confidence            22222221111212222  3566777778888888888777766544332    111122222  233456666665554


Q ss_pred             HH
Q 010740          380 EQ  381 (502)
Q Consensus       380 ~~  381 (502)
                      .+
T Consensus       683 ~~  684 (894)
T COG2909         683 LK  684 (894)
T ss_pred             Hh
Confidence            44

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.24  E-value=26  Score=30.96  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      +++.....|..+|.+.+|.++.+.....+ +.+...+..|+..+...||--+|.+-++++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34455667778888888888888777765 6677777788888888888777777776664

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.92  E-value=27  Score=30.90  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-AM-RFELIETLYQDMDE-RSVTPNTVTQNIVLGGYGKAGMFDQMER  271 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~a~~  271 (502)
                      +.+|+.+|+.......+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++..-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            445555555322111234455555555555444 11 12222222232222 2344555556666666666666666666


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740          272 VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY  309 (502)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  309 (502)
                      +++......+...|...|..+|....+.|+..-..++.
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            66655443334445566666666666666655444444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.53  E-value=21  Score=29.41  Aligned_cols=87  Identities=8%  Similarity=0.077  Sum_probs=42.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFN-----ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      ..+...+++++|...++.....   +....+.     .|.......|.+|+|+..++.....+.  .......-.+.+..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence            4455666666666666655431   1111222     223334455666666666655544322  12222333445556


Q ss_pred             cCCHhHHHHHHHHHHHc
Q 010740          369 MGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~~  385 (502)
                      .|+-++|..-|+...+.
T Consensus       172 kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         172 KGDKQEARAAYEKALES  188 (207)
T ss_pred             cCchHHHHHHHHHHHHc
Confidence            66666666666665554

>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]

Probab=84.51  E-value=36  Score=35.00  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH
Q 010740          149 KLLVLLGKSGQPELARKVFNEMVE  172 (502)
Q Consensus       149 ~l~~~~~~~g~~~~a~~~~~~~~~  172 (502)
                      .++..+.++|+.+.|.+...+...
T Consensus       330 ~~vyy~lR~G~lk~A~~~l~e~~~  353 (835)
T KOG2168|consen  330 PLVYYLLRCGDLKAASQFLNENKD  353 (835)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhh
Confidence            456667778888888887777654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.43  E-value=3.9  Score=22.22  Aligned_cols=27  Identities=15%  Similarity=0.119  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566777788888888888888887765

...

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.41  E-value=31  Score=30.36  Aligned_cols=25  Identities=20%  Similarity=0.096  Sum_probs=18.6

Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          466 IMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       466 ~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      .++..+.+.|++.+|+.+..-.+..
T Consensus       130 Kli~l~y~~~~YsdalalIn~ll~E  154 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPLLHE  154 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4566778888888888877766554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.30  E-value=2.4  Score=22.78  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=8.2

Q ss_pred             HHHHhcCChHHHHHHHHHHH
Q 010740          152 VLLGKSGQPELARKVFNEMV  171 (502)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~~~  171 (502)
                      .++.+.|++++|.+.|++++
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~   27 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLI   27 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHH
Confidence            33333444444444444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.51  E-value=1.8  Score=22.17  Aligned_cols=19  Identities=21%  Similarity=0.214  Sum_probs=8.9

Q ss_pred             HHHHHHHhcCCcHHHHHHH
Q 010740          466 IMTEAYAKEGMNDKVYALE  484 (502)
Q Consensus       466 ~l~~~~~~~g~~~~A~~~~  484 (502)
                      .+...+...|+.++|.+++
T Consensus         6 ~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHH
Confidence            3344444455555544444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.49  E-value=32  Score=29.93  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=27.3

Q ss_pred             cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740          157 SGQPELARKVFNEMVEEGIEPT---PELYTALLAAYCRNSLIDEAFVTLNQMK  206 (502)
Q Consensus       157 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~  206 (502)
                      ..++++|+.-|++.++..-...   -.+...++..+.+.|++++..+.|.++.
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL   92 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL   92 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3456666666666665421222   2233445666666666666666666653

>smart00028 TPR Tetratricopeptide repeats

Probab=82.17  E-value=2.3  Score=22.16  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          464 FSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      |..+...+...|++++|...+++.++.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            344445555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=82.09  E-value=11  Score=33.91  Aligned_cols=95  Identities=9%  Similarity=-0.051  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +.+-...|.+.|.|++|+++|.......  +.+..++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARE  176 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHH
Confidence            3444556788999999999999877652  5588899999999999999998888777766542 122334444444444


Q ss_pred             hCCCHHHHHHHHHHhhcC
Q 010740          191 RNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~  208 (502)
                      ..|...+|.+-++...+.
T Consensus       177 ~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHhhHHHHHHhHHHHHhh
Confidence            556667777777666654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=81.52  E-value=4.9  Score=35.97  Aligned_cols=93  Identities=13%  Similarity=0.075  Sum_probs=59.0

Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740          363 IEAFSDMGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD  441 (502)
Q Consensus       363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  441 (502)
                      ..-|.++|.+++|+.+|......  .| +.+++..-..+|.+...+..|..-...+...+ ..-...|..-+.+-...|.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence            45678889999999999877664  45 77888888888888888888877666665543 1112223333333333455


Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q 010740          442 LMEMERVYKRMKEKHCRPD  460 (502)
Q Consensus       442 ~~~a~~~~~~~~~~g~~p~  460 (502)
                      ..+|.+-++...+  +.|+
T Consensus       181 ~~EAKkD~E~vL~--LEP~  197 (536)
T KOG4648|consen  181 NMEAKKDCETVLA--LEPK  197 (536)
T ss_pred             HHHHHHhHHHHHh--hCcc
Confidence            5555555555555  3454

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.39  E-value=0.68  Score=36.46  Aligned_cols=130  Identities=10%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740          326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG  405 (502)
Q Consensus       326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  405 (502)
                      .++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++..       +..-...++..|.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence            356777788889999999999998776668899999999999998888888888721       1123345677777888


Q ss_pred             ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 010740          406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMN  477 (502)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~  477 (502)
                      .++++.-++..+....         ..+..+...++++.|.+++.+.      ++...|..++..|...+..
T Consensus        85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen   85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred             hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence            7777777666433221         1111123345555555333222      3678888888888776653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.12  E-value=2.6  Score=25.02  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=12.0

Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHH
Q 010740          467 MTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       467 l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      |..+|...|+.+.|.+++++.+.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            34455555555555555555553

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.03  E-value=41  Score=29.58  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh---
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD---  368 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  368 (502)
                      =|+++...+++.+++.+.-+--+.--+....+...-|-.|.+.++...+.++-.......-.-+...|..++..|..   
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL  168 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL  168 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence            35677777777777766544433222233445555566677778877777777766655433344557666666544   


Q ss_pred             --cCCHhHHHHHH
Q 010740          369 --MGDAKHMEYTF  379 (502)
Q Consensus       369 --~~~~~~a~~~~  379 (502)
                        .|.+++|+++.
T Consensus       169 lPLG~~~eAeelv  181 (309)
T PF07163_consen  169 LPLGHFSEAEELV  181 (309)
T ss_pred             hccccHHHHHHHH
Confidence              57777777766

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 87.2 bits (214), Expect = 4e-18
 Identities = 30/268 (11%), Positives = 75/268 (27%), Gaps = 8/268 (2%)

Query: 95  KKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEML---KEQPFYQPKEGTYMKLL 151
            ++L+ K +         +  +  +  +    + Q+   L     Q    P E    +LL
Sbjct: 41  MQRLKAKLQMPFQSGE-FKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLL 99

Query: 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP-- 209
                    ++ +    +  +  +    +   A          +  A   L         
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159

Query: 210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQM 269
                +  Y+ ++        F+ +  +   + +  +TP+ ++    L   G+       
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

Query: 270 -ERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI 328
            ER L  M +       +     +LS       +  + +    F      P     + L+
Sbjct: 220 IERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278

Query: 329 GAYGKKRMYDKMSSVMEYMRKLQFPWTS 356
                K        +   ++ LQ  +  
Sbjct: 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.1 bits (149), Expect = 2e-10
 Identities = 27/236 (11%), Positives = 59/236 (25%), Gaps = 4/236 (1%)

Query: 268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNIL 327
           QM   L      A   P    +  +L     K  +D+ +    +     +  + +     
Sbjct: 74  QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133

Query: 328 IGAYGKKRMYDKMSSVMEYMR---KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA 384
                          ++       + +   T   YN V+  ++  G  K + Y    +  
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193

Query: 385 EGMKADTKTFCCLINGYANAGLFHKVISSV-RLASKLQIAENVSFYNAVISACIKADDLM 443
            G+  D  ++   +            I       S+  +     F   ++S   +A  L 
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253

Query: 444 EMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ 499
            + +V          P     S +      +        L      +         
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.4 bits (174), Expect = 4e-13
 Identities = 80/563 (14%), Positives = 160/563 (28%), Gaps = 161/563 (28%)

Query: 37  PNFNLIHCSVTSTNKHTSFSSESAVAAKKRLWKEGEYPGVSETSIPGYRSKRTPIKNLKK 96
            N+  +   + +  +  S  +   +  + RL+        ++       S+  P   L++
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------NDNQVFAKYNVSRLQPYLKLRQ 142

Query: 97  KLERKAKAKAWVNTVAETFSDHVLK---KQWF--QALQVFEMLKEQPFYQPKEGTYMKLL 151
            L  + +    V  +        +    K W        +++  +  F    +  ++   
Sbjct: 143 AL-LELRPAKNV-LI------DGVLGSGKTWVALDVCLSYKVQCKMDF----KIFWLN-- 188

Query: 152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL-----------IDEAFV 200
             L     PE             +E   +L   +   +   S            I     
Sbjct: 189 --LKNCNSPETV-----------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 201 TLNQMKTLPNC---QPDVYTYSTLIKACVDAMRFE---LIETLYQDMDERSVT---PNTV 251
            L + K   NC     +V           +A       L+ T  +    + VT       
Sbjct: 236 RLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTT--RF---KQVTDFLSAAT 285

Query: 252 TQNIVLGGYGKAGMFDQMERVLSGML---------ESATCKPDVWTMNTILSVFANKGQV 302
           T +I L  +      D+++ +L   L         E  T  P        LS+ A   + 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------LSIIAESIR- 338

Query: 303 DMMERWYEKFRNFGIDPETRTFNILIGA---YGKKRMYDKMSSVMEY-----MRKLQFPW 354
           D +  W + +++   D  T      +        ++M+D++ SV           L   W
Sbjct: 339 DGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIW 396

Query: 355 TSSTYNNVIEAFSDM-------GDAK------HMEYTFEQMHAEGMKA----------DT 391
                ++V+   + +          K         Y   ++  E   A            
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 392 KTFCC------LINGY---------ANAG------LFHKVISSVR-LASKLQIAENVSFY 429
           KTF         ++ Y          N        LF  V    R L  K++     + +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS--TAW 514

Query: 430 NAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK--EGMNDKVY------ 481
           NA  S     + L ++ + YK     +   +   +  +  A       + + +       
Sbjct: 515 NASGSI---LNTLQQL-KFYK----PYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 482 ----ALEQEKLQMLLEASGHWQQ 500
               AL  E   +  EA    Q+
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 69/244 (28%)

Query: 303 DMMERWYEKF-RNFGI-DPETRTFNILIGAYGKKRMYD---KMSSVMEYMRKLQFPWTSS 357
           D++  + + F  NF   D +    +IL      K   D        +    +L F WT  
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSIL-----SKEEIDHIIMSKDAVSGTLRL-F-WTLL 72

Query: 358 TY-NNVIEAFSDMGDAKHMEYTF--EQMHAE--GMKADTKTFCCLINGYANAG-LFHK-- 409
           +    +++ F  + +   + Y F    +  E       T+ +    +   N   +F K  
Sbjct: 73  SKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 410 V-----ISSVRLA-SKLQIAENVS-------------------------FYNAV----IS 434
           V        +R A  +L+ A+NV                              +    + 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 435 ACIKADDLMEM-ERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE 493
            C   + ++EM +++  ++          + +I      K  ++       Q +L+ LL+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------KLRIHS-----IQAELRRLLK 239

Query: 494 ASGH 497
           +  +
Sbjct: 240 SKPY 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.74
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.69
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.58
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.52
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.99
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.94
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.77
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.66
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.57
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.48
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.36
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.25
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.17
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.14
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.11
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.1
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.01
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.0
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.9
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.85
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.84
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.76
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.63
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.33
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.3
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.2
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.98
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.85
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.85
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.78
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.28
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.2
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.07
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.99
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.84
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.92
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.61
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.26
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.24
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.07
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.07
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.67
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.43
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.38
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.32
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.26
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.05
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.68
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.56
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.29
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.03
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.76
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.38
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	89.34
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	89.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.61
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.42
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.16
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.02
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.02
2p58_C	116	Putative type III secretion protein YSCG; type III	85.15
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.86
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	83.71
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.77
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.33
3bbn_U	190	Ribosomal protein S21; small ribosomal subunit, sp	81.98
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	80.08
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.02

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-35  Score=293.53  Aligned_cols=246  Identities=11%  Similarity=-0.020  Sum_probs=163.2

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--------------------------------CCCCHHHHHHHHHH
Q 010740          248 PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT--------------------------------CKPDVWTMNTILSV  295 (502)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~  295 (502)
                      ++..+++.++..|.+.|++++|.++|+++++...                                .+.+..+++.++..
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  382 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY  382 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            4455555555666666666666666665544321                                12345566666777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHH
Q 010740          296 FANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHM  375 (502)
Q Consensus       296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  375 (502)
                      |.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+.. +..+|..++.+|.+.|++++|
T Consensus       383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777766543 445666777777777777777777777777665443 666777777777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--hHHHHHHHHHHHHcCCHHHHHHHH
Q 010740          376 EYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL----QIAEN--VSFYNAVISACIKADDLMEMERVY  449 (502)
Q Consensus       376 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~  449 (502)
                      .++|+++.+.. +.+..+|..++..|.+.|++++|.++++.+.+.    +..|+  ..+|..++.+|.+.|++++|.++|
T Consensus       461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~  539 (597)
T 2xpi_A          461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL  539 (597)
T ss_dssp             HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            77777776653 335667777777777777777777777776665    44555  567777777777777777777777


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740          450 KRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH  497 (502)
Q Consensus       450 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  497 (502)
                      +++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++..|++...
T Consensus       540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            7777654 2366777777777777777777777777777776665543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.5e-34  Score=283.55  Aligned_cols=353  Identities=10%  Similarity=-0.058  Sum_probs=283.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------C
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE---------------G  174 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~  174 (502)
                      .+..+...+...|++++|+.+|+.+...   +++..+++.++.+|.+.|++++|.++|+++...               +
T Consensus       119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (597)
T 2xpi_A          119 DAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG  195 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence            3445667777788888888888776542   456667777777777777777777777642211               1


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC--------------------------------------------
Q 010740          175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPN--------------------------------------------  210 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------------------------------  210 (502)
                      .+.+..+|+.++.+|.+.|++++|+++|+++.+.+.                                            
T Consensus       196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  275 (597)
T 2xpi_A          196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY  275 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence            122466777777777777777777777766643210                                            


Q ss_pred             -------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------------
Q 010740          211 -------------------------CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-------------------  246 (502)
Q Consensus       211 -------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------------------  246 (502)
                                               .+++..+|+.++.+|.+.|++++|.++|+++.+.+.                   
T Consensus       276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  355 (597)
T 2xpi_A          276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK  355 (597)
T ss_dssp             HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence                                     025667777778888888888888888887765321                   


Q ss_pred             --------------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010740          247 --------------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKF  312 (502)
Q Consensus       247 --------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  312 (502)
                                    +.+..+++.++..|.+.|++++|.++|+++.+..  +.+..+|+.++.+|.+.|++++|+++|+++
T Consensus       356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                          2367788999999999999999999999997752  346889999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCC
Q 010740          313 RNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMK  388 (502)
Q Consensus       313 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~  388 (502)
                      .+.+ +.+..++..++.+|.+.|++++|.++|+.+.+.... +..+|+.++..|.+.|++++|.++|+++.+.    +..
T Consensus       434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  511 (597)
T 2xpi_A          434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN  511 (597)
T ss_dssp             HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence            9865 668899999999999999999999999999987655 8899999999999999999999999999876    667


Q ss_pred             CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010740          389 AD--TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSI  466 (502)
Q Consensus       389 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~  466 (502)
                      |+  ..+|..++.+|.+.|++++|.++++.+.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.... +...+..
T Consensus       512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~  589 (597)
T 2xpi_A          512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDL  589 (597)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHH
Confidence            87  7899999999999999999999999999875 668999999999999999999999999999986432 5677777


Q ss_pred             HHHHH
Q 010740          467 MTEAY  471 (502)
Q Consensus       467 l~~~~  471 (502)
                      +..+|
T Consensus       590 l~~~~  594 (597)
T 2xpi_A          590 LKRAL  594 (597)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            76655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.8e-30  Score=240.60  Aligned_cols=370  Identities=13%  Similarity=0.096  Sum_probs=327.8

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+...|++++|++.|+.+.+..  +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            45667899999999999988763  5567788889999999999999999999998875 67889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG  275 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  275 (502)
                      ++|++.|+++.+..  +.+..+|..+..++...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus        84 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           84 QEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999998752  556778999999999999999999999999987433 567788889999999999999999999


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 010740          276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT  355 (502)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  355 (502)
                      +++..  +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+..+.... +
T Consensus       161 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~  236 (388)
T 1w3b_A          161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H  236 (388)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred             HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence            98753  3467899999999999999999999999999865 566788999999999999999999999999887654 7


Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..++...|++++|.+.++.+.+.. +.+..++..+...
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  314 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence            8899999999999999999999999999864 3357789999999999999999999999999874 6788999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      +.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|++.++++++..|.....|
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~  376 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY  376 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence            999999999999999999863 33688999999999999999999999999999877655443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.4e-31  Score=256.54  Aligned_cols=188  Identities=14%  Similarity=0.183  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---------cHHHHHHHHHHHHHcCCCCChH
Q 010740          287 WTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR---------MYDKMSSVMEYMRKLQFPWTSS  357 (502)
Q Consensus       287 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~  357 (502)
                      ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+         .++.|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            3466667777777777777777777777777777777777777776543         3677888888888888888888


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010740          438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE  474 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~  474 (502)
                      +.|++++|.++|++|++.|..|+..||+.++..|+..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888877753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=1.9e-30  Score=248.54  Aligned_cols=186  Identities=15%  Similarity=0.155  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCCCHH
Q 010740          217 TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM---------FDQMERVLSGMLESATCKPDVW  287 (502)
Q Consensus       217 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~  287 (502)
                      .++.+|++|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+.         ++.|.++|++|.+ .|+.||..
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHH
Confidence            4566666666666666666666666666666666666666666665543         3445555555532 34555555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS  367 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  367 (502)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740          368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN  403 (502)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  403 (502)
                      +.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            555555555555555555555555555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=7.5e-27  Score=220.16  Aligned_cols=355  Identities=13%  Similarity=0.027  Sum_probs=310.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+..+...+...|++++|..+++.+.+..  +.+..+|..+...+.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus        34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  110 (388)
T 1w3b_A           34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA  110 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence            334444556778899999999999988764  6788899999999999999999999999999874 4567789999999


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      +...|++++|++.|+++.+..  +.+...+..+...+...|++++|.+.|+++.+... .+..+|..+...+...|++++
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~  187 (388)
T 1w3b_A          111 LVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWL  187 (388)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998753  45566788899999999999999999999998743 367899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      |...|+++++..  +.+...+..+...+...|++++|...|++..... +.+..++..+...|.+.|++++|.+.|+.+.
T Consensus       188 A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  264 (388)
T 1w3b_A          188 AIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999998753  3467789999999999999999999999998754 5568899999999999999999999999999


Q ss_pred             HcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740          349 KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF  428 (502)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  428 (502)
                      +.... +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus       265 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~  341 (388)
T 1w3b_A          265 ELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA  341 (388)
T ss_dssp             HTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred             hhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence            97655 77899999999999999999999999999874 5578899999999999999999999999998863 567889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      +..+..+|.+.|++++|.+.|+++.+... -+...|..+...+...|+
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          342 HSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence            99999999999999999999999998532 257788888887776653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-25  Score=218.31  Aligned_cols=379  Identities=8%  Similarity=0.010  Sum_probs=319.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+......+...|++++|+..|+.+.+.   .|+..+|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..+
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            44555667788899999999999999886   4689999999999999999999999999999875 5678899999999


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCC---------------------------------------------------------
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNC---------------------------------------------------------  211 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~---------------------------------------------------------  211 (502)
                      +...|++++|+..|+++......                                                         
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            99999999999999998764210                                                         


Q ss_pred             --------------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHH
Q 010740          212 --------------------QPDVYTYSTLIKACVD---AMRFELIETLYQDMDE-----RSV--------TPNTVTQNI  255 (502)
Q Consensus       212 --------------------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~  255 (502)
                                          +.+...+......+..   .|++++|..+++++.+     ...        +.+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                0013333334444443   7999999999999987     311        223567888


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR  335 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  335 (502)
                      +...+...|++++|...++++++..   |+...+..+..++...|++++|...++++.... +.+...+..+...|...|
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            8999999999999999999998763   448888999999999999999999999998764 567788999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010740          336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVR  415 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  415 (502)
                      ++++|...++.+.+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999987665 77899999999999999999999999998763 3356788999999999999999999999


Q ss_pred             HHHhcCCC-CC----hHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          416 LASKLQIA-EN----VSFYNAVISACIK---ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       416 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      .+.+.... ++    ...+..+..++..   .|++++|...|+++.+... .+..++..+..+|.+.|++++|.+.++++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            88775311 11    3488999999999   9999999999999998642 36888999999999999999999999999


Q ss_pred             HHhhhhccccc
Q 010740          488 LQMLLEASGHW  498 (502)
Q Consensus       488 ~~~~~~~~~~~  498 (502)
                      ++..+.+...|
T Consensus       476 ~~~~~~~~~~~  486 (514)
T 2gw1_A          476 ADLARTMEEKL  486 (514)
T ss_dssp             HHHCSSHHHHH
T ss_pred             HHhccccHHHH
Confidence            99988766544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=2.3e-24  Score=207.38  Aligned_cols=300  Identities=11%  Similarity=0.061  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+......+...|++++|+.+|+.+.+..  +.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+..+
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            444555566666777777777777766542  4456677777777777777777777777777664 4456667777777


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDV---YTYSTLIKA------------CVDAMRFELIETLYQDMDERSVTPNTVTQ  253 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  253 (502)
                      |...|++++|++.|+++.+..  +.+.   ..+..+...            +...|++++|...|+++.+... .+..++
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  180 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR  180 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence            777777777777777776532  2333   455555333            5556666666666666655422 255556


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 010740          254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNIL------  327 (502)
Q Consensus       254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------  327 (502)
                      ..+..+|.+.|++++|.++|+++++..  +.+..++..+..+|...|++++|+..|+++.... +.+...+..+      
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~  257 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL  257 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence            666666666666666666666665432  2345556666666666666666666666665432 2223333322      


Q ss_pred             ------HHHHHccCcHHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          328 ------IGAYGKKRMYDKMSSVMEYMRKLQFPWT----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL  397 (502)
Q Consensus       328 ------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  397 (502)
                            ...|.+.|++++|...|+.+.+.... +    ...|..+..++.+.|++++|...++++.+.. +.+...+..+
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                  34444445555555555444443221 1    1234444444444445555544444444331 1233444444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 010740          398 INGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      ..+|...|++++|...++.+.+
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            4444444444444444444444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.9e-23  Score=200.94  Aligned_cols=342  Identities=12%  Similarity=0.056  Sum_probs=289.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      +.+...+..++..+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+..  +.+..++..
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~   99 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQ   99 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHH
Confidence            5567799999999999999999999999999874 5679999999999999999999999999998853  567889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCC
Q 010740          221 LIKACVDAMRFELIETLYQDMDERSVTPNT---VTQNIV------------LGGYGKAGMFDQMERVLSGMLESATCKPD  285 (502)
Q Consensus       221 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  285 (502)
                      +..+|...|++++|.+.|+++.+.... +.   ..+..+            ...+...|++++|.+.|+++++..  +.+
T Consensus       100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~  176 (450)
T 2y4t_A          100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWD  176 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            999999999999999999999987432 33   555555            444889999999999999998753  457


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH---
Q 010740          286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV---  362 (502)
Q Consensus       286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---  362 (502)
                      ...+..+..+|...|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+.+.+.... +...+..+   
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~  254 (450)
T 2y4t_A          177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV  254 (450)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence            8889999999999999999999999998754 667889999999999999999999999999987554 55555555   


Q ss_pred             ---------HHHHHhcCCHhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHH
Q 010740          363 ---------IEAFSDMGDAKHMEYTFEQMHAEGMKAD-----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSF  428 (502)
Q Consensus       363 ---------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  428 (502)
                               +..+...|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|...++.+.+.. +.+..+
T Consensus       255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~  331 (450)
T 2y4t_A          255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNA  331 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH
Confidence                     88899999999999999999985  454     4578889999999999999999999998864 567899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------------HHHHhcC-----CcHHHHHHHHH-HHHh
Q 010740          429 YNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT------------EAYAKEG-----MNDKVYALEQE-KLQM  490 (502)
Q Consensus       429 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~  490 (502)
                      |..+..+|...|++++|...|+++.+.... +...+..+.            ..|...|     +.+++.+.+++ +++.
T Consensus       332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~  410 (450)
T 2y4t_A          332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW  410 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999985322 566777666            3355555     66788888886 5555


Q ss_pred             hhhc
Q 010740          491 LLEA  494 (502)
Q Consensus       491 ~~~~  494 (502)
                      .|+.
T Consensus       411 ~pd~  414 (450)
T 2y4t_A          411 HPDN  414 (450)
T ss_dssp             CGGG
T ss_pred             CCCC
Confidence            5543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=3.7e-23  Score=203.73  Aligned_cols=378  Identities=9%  Similarity=0.030  Sum_probs=303.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      ...+......+...|++++|++.|+.+.+..  +.+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            3556667778889999999999999998874  6688899999999999999999999999999876 567889999999


Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCC-----------------------------------CCCHH----------------
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNC-----------------------------------QPDVY----------------  216 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~----------------  216 (502)
                      ++...|++++|+..|+.+...+..                                   .|+..                
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            999999999999999644221100                                   01110                


Q ss_pred             --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccCChH
Q 010740          217 --------------TYSTLIKACV--------DAMRFELIETLYQDMDERSVTPN-------TVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       217 --------------~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~g~~~~-------~~~~~~l~~~~~~~g~~~  267 (502)
                                    ....+...+.        ..+++++|..+++++.+.... +       ..++..+...+...|+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence                          1111111111        124788999999998876433 3       235667778888999999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM  347 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  347 (502)
                      +|.+.++.+++.   .|+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+
T Consensus       261 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          261 DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999875   5668889999999999999999999999998865 567889999999999999999999999999


Q ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----C
Q 010740          348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQ-----I  422 (502)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~  422 (502)
                      .+.... +...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+..     .
T Consensus       337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            988655 67889999999999999999999999999864 3456788899999999999999999999887652     1


Q ss_pred             CCChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          423 AENVSFYNAVISACIKA----------DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       423 ~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ......+..+..++...          |++++|...|+++.+... .+...+..+..+|.+.|++++|.+.++++++..+
T Consensus       415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            11223345556777888          999999999999998643 3678999999999999999999999999999876


Q ss_pred             hccc
Q 010740          493 EASG  496 (502)
Q Consensus       493 ~~~~  496 (502)
                      ....
T Consensus       494 ~~~~  497 (537)
T 3fp2_A          494 TMDE  497 (537)
T ss_dssp             -CHH
T ss_pred             CcHH
Confidence            6543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-22  Score=198.18  Aligned_cols=344  Identities=9%  Similarity=-0.048  Sum_probs=289.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...+..+...+.+.|++++|...|+++.+.+  |+..+|..+..++...|++++|++.++++.+..  +.+..+|..+..
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~   81 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence            4577888899999999999999999999885  799999999999999999999999999998753  667889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC-------------------------------------------------------
Q 010740          224 ACVDAMRFELIETLYQDMDERSVTP-------------------------------------------------------  248 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~~~-------------------------------------------------------  248 (502)
                      ++...|++++|...|+++...+...                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999987764210                                                       


Q ss_pred             -----------------------CHHHHHHHHHHHh---ccCChHHHHHHHHHHHH-----cCCC-------CCCHHHHH
Q 010740          249 -----------------------NTVTQNIVLGGYG---KAGMFDQMERVLSGMLE-----SATC-------KPDVWTMN  290 (502)
Q Consensus       249 -----------------------~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~  290 (502)
                                             +...+......+.   +.|++++|...|+++++     ....       ..+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                   1233333333344   38999999999999977     2111       12356788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740          291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG  370 (502)
Q Consensus       291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  370 (502)
                      .+...+...|++++|...|+++.+..  |+...+..+..+|...|++++|...++.+.+.... +...+..+...+...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence            88999999999999999999998865  33888999999999999999999999999987654 7788999999999999


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK  450 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  450 (502)
                      ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999864 3356788899999999999999999999998864 5567889999999999999999999999


Q ss_pred             HHHHCCCC-CC----HHHHHHHHHHHHh---cCCcHHHHHHHHHHHHhhhhccc
Q 010740          451 RMKEKHCR-PD----SETFSIMTEAYAK---EGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       451 ~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      ++.+.... ++    ...|..+...|..   .|++++|.+.++++++..+....
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  450 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ  450 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence            99875322 11    3488999999999   99999999999999998765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=1.1e-20  Score=175.66  Aligned_cols=327  Identities=12%  Similarity=0.031  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      .+......+...|++++|+..|+.+.+..  +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            34444555566666666666666665542  4455566666666666666666666666666553 33556666666666


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQP----DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  265 (502)
                      ...|++++|+..|+++.+.   .|    +...+..+.....                       ...+..+...+...|+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred             HHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence            6666666666666666653   23    2223332211100                       0112223455666666


Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740          266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVME  345 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  345 (502)
                      +++|.+.++++++..  +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++++|...++
T Consensus       136 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  212 (359)
T 3ieg_A          136 YTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR  212 (359)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666666665542  2345566666666666666666666666666543 4455666666666666666666666666


Q ss_pred             HHHHcCCCCChHHHH------------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHH
Q 010740          346 YMRKLQFPWTSSTYN------------NVIEAFSDMGDAKHMEYTFEQMHAEGMKADT----KTFCCLINGYANAGLFHK  409 (502)
Q Consensus       346 ~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~  409 (502)
                      ...+.... +...+.            .+...+...|++++|...++++.+.... +.    ..+..+..++...|++++
T Consensus       213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~  290 (359)
T 3ieg_A          213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE  290 (359)
T ss_dssp             HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence            66655433 333222            2255566777777777777777664321 22    224445667777777777


Q ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      |...++.+.+.. +.+..++..+..++...|++++|.+.|+++.+.... +...+..+..+..
T Consensus       291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~  351 (359)
T 3ieg_A          291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence            777777776653 446667777777777777777777777777765321 3445555554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=8.7e-21  Score=176.40  Aligned_cols=324  Identities=10%  Similarity=0.037  Sum_probs=246.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+..  +.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence            34566677777777777777777777777654 4556777777777777777777777777776642  44566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          223 KACVDAMRFELIETLYQDMDERSVT--PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                      .++...|++++|...++++.+....  .+...+..+...+.                        ...+..+...+...|
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHcc
Confidence            7777777777777777777665220  12222222221110                        112334567889999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE  380 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  380 (502)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...|+
T Consensus       135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  212 (359)
T 3ieg_A          135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR  212 (359)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998865 667888999999999999999999999999987654 88999999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHcCCHHH
Q 010740          381 QMHAEGMKADTKTFC------------CLINGYANAGLFHKVISSVRLASKLQIAENV----SFYNAVISACIKADDLME  444 (502)
Q Consensus       381 ~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~  444 (502)
                      +..+.. +.+...+.            .+...+...|++++|...++.+.+.. +.+.    ..+..+..++...|++++
T Consensus       213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~  290 (359)
T 3ieg_A          213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVE  290 (359)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHH
Confidence            998763 22333333            23667889999999999999998864 3333    335567889999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          445 MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       445 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      |...+++..+.. +.+..+|..+..+|.+.|++++|.+.++++++..|++...+
T Consensus       291 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          291 AIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            999999999863 23788999999999999999999999999999988765543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.9e-20  Score=184.30  Aligned_cols=345  Identities=9%  Similarity=0.015  Sum_probs=273.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...|..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|++.|+++.+..  +.+..++..+..
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~  101 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence            4577888999999999999999999999875 5688999999999999999999999999998853  667889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCC------------------------------------CCCHH----------------
Q 010740          224 ACVDAMRFELIETLYQDMDERSV------------------------------------TPNTV----------------  251 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~------------------------------------~~~~~----------------  251 (502)
                      ++...|++++|...|+.+....-                                    .|+..                
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            99999999999999964421110                                    01111                


Q ss_pred             --------------HHHHHHHHHhc--------cCChHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 010740          252 --------------TQNIVLGGYGK--------AGMFDQMERVLSGMLESATCKPD-----VWTMNTILSVFANKGQVDM  304 (502)
Q Consensus       252 --------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~  304 (502)
                                    ....+...+..        .|++++|..+++++++...-.++     ..++..+...+...|++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                          11222222221        24788999999998764211111     2356777788889999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          305 MERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      |...|+++.+.  .|+...+..+...|...|++++|...+..+.+.... +..++..+...+...|++++|...|+++.+
T Consensus       262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999875  455888899999999999999999999999887655 788999999999999999999999999988


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CC
Q 010740          385 EGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-----RP  459 (502)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-----~p  459 (502)
                      .. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|+++.+...     ..
T Consensus       339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  416 (537)
T 3fp2_A          339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV  416 (537)
T ss_dssp             HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence            64 2346788889999999999999999999998874 56678899999999999999999999999876421     11


Q ss_pred             CHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHhhhhccc
Q 010740          460 DSETFSIMTEAYAKE----------GMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       460 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      ....+..+..++.+.          |++++|+..++++++..|....
T Consensus       417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  463 (537)
T 3fp2_A          417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ  463 (537)
T ss_dssp             TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence            233355556777887          9999999999999998776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.4e-20  Score=168.93  Aligned_cols=289  Identities=12%  Similarity=-0.021  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG  259 (502)
Q Consensus       180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~  259 (502)
                      ..+..+...+...|++++|+++|+++.+..  +.+...+..++.++...|++++|..+++++.+... .+...+..+...
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~   99 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY   99 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence            334444444444455555555555444321  22333344444444455555555555555444321 134444455555


Q ss_pred             HhccC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740          260 YGKAG-MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD  338 (502)
Q Consensus       260 ~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  338 (502)
                      +...| ++++|.+.|++.++..  +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|+++
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            55555 5555555555554321  2233445555555555555555555555555432 223344444555555566666


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChHHH
Q 010740          339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--------MKADTKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a  410 (502)
                      +|.+.++.+.+.... +...+..+...+...|++++|...++++.+..        ......++..+..++...|++++|
T Consensus       177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            666666655554433 45566666666666666666666666665431        122345677777777778888888


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 010740          411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY-AKEGMN  477 (502)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~  477 (502)
                      ...++.+.+.. +.+..++..+..++...|++++|.+.|+++.+... .+...+..+..++ ...|+.
T Consensus       256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCch
Confidence            88877777654 44667777788888888888888888888776532 2566777777766 345544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=2.2e-17  Score=160.10  Aligned_cols=350  Identities=12%  Similarity=-0.010  Sum_probs=299.9

Q ss_pred             HHHHHHHHHHHh----hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHH
Q 010740          109 NTVAETFSDHVL----KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK----SGQPELARKVFNEMVEEGIEPTPE  180 (502)
Q Consensus       109 ~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  180 (502)
                      .....+-..+..    .+++++|+..|+...+.+    +...+..|...|..    .+++++|.+.|++..+.|   +..
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  112 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ  112 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            334444445555    789999999999998875    67889999999998    999999999999999865   677


Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740          181 LYTALLAAYCR----NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVT  252 (502)
Q Consensus       181 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  252 (502)
                      .+..|...|..    .+++++|+++|++..+.    -+...+..|...|..    .+++++|.+.|++..+.|   +...
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            88889999988    88999999999999874    367788888888887    789999999999998875   6788


Q ss_pred             HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          253 QNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF  324 (502)
Q Consensus       253 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  324 (502)
                      +..+...|..    .+++++|.+.|++..+.    .+...+..+...|..    .+++++|..+|++..+.+   +...+
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            8888888887    89999999999999764    367788888888886    899999999999998754   45667


Q ss_pred             HHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010740          325 NILIGAYGK----KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFC  395 (502)
Q Consensus       325 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~  395 (502)
                      ..+...|..    .++.++|...|+...+.+   +...+..+...|...     ++.++|...|++..+.|   +...+.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            777777777    899999999999998764   567788888888887     89999999999999865   556788


Q ss_pred             HHHHHHHhcC---ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740          396 CLINGYANAG---LFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       396 ~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~  468 (502)
                      .+...|...|   ++++|.++++...+.+   +...+..|...|..    .+++++|.++|++..+.|   +...+..|.
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg  406 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            8888888766   7899999999998864   67788889999998    899999999999999875   688889999


Q ss_pred             HHHHh----cCCcHHHHHHHHHHHHhh
Q 010740          469 EAYAK----EGMNDKVYALEQEKLQML  491 (502)
Q Consensus       469 ~~~~~----~g~~~~A~~~~~~~~~~~  491 (502)
                      ..|.+    .++.++|.+.|+++.+.+
T Consensus       407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          407 EIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            99998    899999999999999988

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-19  Score=166.62  Aligned_cols=292  Identities=8%  Similarity=-0.047  Sum_probs=187.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      .+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+..  +.+...+..+
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l   96 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV   96 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence            344556666666666677777777777666553 3444555556666666677777777776666532  4455566666


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          222 IKACVDAM-RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       222 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                      ...+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++++..  +.+...+..+...+...|
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence            66666666 677777777766655322 45566666667777777777777777665542  223455555666677777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHhcCCH
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ--------FPWTSSTYNNVIEAFSDMGDA  372 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~  372 (502)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..        .+.....+..+...+...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            7777777777766543 4456666777777777777777777777666542        122456777777777777777


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH-HHcCCH
Q 010740          373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC-IKADDL  442 (502)
Q Consensus       373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~  442 (502)
                      ++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++ ...|+.
T Consensus       253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence            77777777777653 2345667777777777788888877777776653 44566666666666 344443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.88  E-value=6.4e-20  Score=171.34  Aligned_cols=297  Identities=12%  Similarity=0.037  Sum_probs=218.2

Q ss_pred             hCCCHHHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          191 RNSLIDEAFV-TLNQMKTLPNCQP--DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       191 ~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      ..|++++|++ .|++........|  +...+..+...+...|++++|...|+++.+... .+..++..+..++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence            3467777777 7776554321111  234566677777777788888888777777643 36667777777777788888


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNI---------------LIGAYG  332 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~  332 (502)
                      +|.+.|+++++..  +.+..++..+..++...|++++|...++++.... +.+...+..               .+..+.
T Consensus       116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            8888887776643  3466777777777888888888888887777643 222222211               233334


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740          333 KKRMYDKMSSVMEYMRKLQFPW-TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI  411 (502)
Q Consensus       333 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  411 (502)
                      ..|++++|...++.+.+..... +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            8899999999999998875442 57889999999999999999999999998763 345788999999999999999999


Q ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCcHHHH
Q 010740          412 SSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP----------DSETFSIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~  481 (502)
                      ..++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+.....          ...+|..+..+|...|++++|.
T Consensus       272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999998874 5678889999999999999999999999988753221          2688999999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 010740          482 ALEQEKLQMLLE  493 (502)
Q Consensus       482 ~~~~~~~~~~~~  493 (502)
                      .++++.++...+
T Consensus       351 ~~~~~~l~~~~~  362 (368)
T 1fch_A          351 AADARDLSTLLT  362 (368)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHH
Confidence            999887776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=8.7e-20  Score=170.40  Aligned_cols=303  Identities=8%  Similarity=-0.046  Sum_probs=172.8

Q ss_pred             hhhcHHHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010740          120 LKKQWFQALQ-VFEMLKEQPFYQP--KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLID  196 (502)
Q Consensus       120 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  196 (502)
                      ..|++++|++ .|+.......-.|  +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            3578888888 7776554321122  34567788888888889999999988888775 567788888888888888888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +|++.|+++.+..  +.+..++..+..++...|++++|...++++.+.... +...+..+..       ...       .
T Consensus       116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-------~  178 (368)
T 1fch_A          116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-------G  178 (368)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-------h
Confidence            8888888887743  567778888888888888888888888888876432 2221111100       000       0


Q ss_pred             HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740          277 LESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW  354 (502)
Q Consensus       277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  354 (502)
                           ..+ ...+..+ ..+...|++++|...|+++.+.. +.  +..++..+...|.+.|++++|...++.+.+.... 
T Consensus       179 -----~~~-~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-  249 (368)
T 1fch_A          179 -----AGL-GPSKRIL-GSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-  249 (368)
T ss_dssp             -------------CTT-HHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             -----hcc-cHHHHHH-HHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence                 000 0001111 11224555555555555555432 11  3455555555555555555555555555554332 


Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------C
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA----------E  424 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~  424 (502)
                      +...|..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++.+.+....          .
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  328 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM  328 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence            44555555555666666666666666555432 223455555666666666666666666555543210          1


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYK  450 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~  450 (502)
                      ...+|..+..+|...|++++|..+++
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            14566666666666666666666654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.84  E-value=8.6e-17  Score=157.62  Aligned_cols=368  Identities=10%  Similarity=0.037  Sum_probs=247.0

Q ss_pred             HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHH
Q 010740          119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAY-CRNSLIDE  197 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~  197 (502)
                      ...|++++|..+|+.+.+.  .+.+...|..++..+.+.|++++|..+|+++++.  .|+...|...+... ...|+.++
T Consensus        23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~   98 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPS   98 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTT
T ss_pred             HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhh
Confidence            5678889999999888876  3667778888888888889999999999888876  36777776666432 34455555


Q ss_pred             HHH----HHHHhhcCCCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 010740          198 AFV----TLNQMKTLPNC-QPDVYTYSTLIKACVD---------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGY---  260 (502)
Q Consensus       198 a~~----~~~~~~~~~~~-~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~---  260 (502)
                      |.+    +|++....-|. +.+...|...+.....         .|+++.|..+|++..+.........|.......   
T Consensus        99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~  178 (530)
T 2ooe_A           99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI  178 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence            544    55555432122 2345566666665543         566777777777766521111112222111100   


Q ss_pred             ----------hccCChH------------------------------------------------------------HHH
Q 010740          261 ----------GKAGMFD------------------------------------------------------------QME  270 (502)
Q Consensus       261 ----------~~~g~~~------------------------------------------------------------~a~  270 (502)
                                .+.++++                                                            .+.
T Consensus       179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~  258 (530)
T 2ooe_A          179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM  258 (530)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence                      0111122                                                            344


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFAN-------KGQVD-------MMERWYEKFRNFGIDPETRTFNILIGAYGKKRM  336 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  336 (502)
                      .+|++.+...  +.+...|...+..+.+       .|+++       +|..+|++..+.-.+.+...+..++..+.+.|+
T Consensus       259 ~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          259 FAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence            4555554431  2345566666666654       68876       888888888763234567788888888888899


Q ss_pred             HHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHH
Q 010740          337 YDKMSSVMEYMRKLQFPWTS-STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLFHKVISSV  414 (502)
Q Consensus       337 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~  414 (502)
                      +++|..+|+.+.+.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|..+|
T Consensus       337 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             HHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            99999999988886433 33 578888888888888999999998888753 1223333322222 33588899999999


Q ss_pred             HHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          415 RLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RP--DSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       415 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      +...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|  ....|...+......|+.+.+..+++++.+..
T Consensus       415 e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          415 ELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8887763 55678888888888888999999999999887642 22  24478888888888899999999999998888


Q ss_pred             hhcc
Q 010740          492 LEAS  495 (502)
Q Consensus       492 ~~~~  495 (502)
                      |++.
T Consensus       494 p~~~  497 (530)
T 2ooe_A          494 REEY  497 (530)
T ss_dssp             HHHH
T ss_pred             chhc
Confidence            7543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2.2e-19  Score=167.53  Aligned_cols=270  Identities=7%  Similarity=-0.048  Sum_probs=209.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010740          214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL  293 (502)
Q Consensus       214 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  293 (502)
                      +...+..+...+.+.|++++|..+|+++.+... .+..++..+...|...|++++|++.|+++++..  +.+...+..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence            344577778888888888888888888877643 367788888888888888888888888887653  34577788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-ChHHHHHH
Q 010740          294 SVFANKGQVDMMERWYEKFRNFGIDP----------ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-TSSTYNNV  362 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l  362 (502)
                      .+|...|++++|...|+++.+.. +.          ....+..+...+...|++++|..+++++.+..... +..++..+
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            88888888888888888887642 11          12234456788899999999999999998875442 67889999


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCH
Q 010740          363 IEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDL  442 (502)
Q Consensus       363 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  442 (502)
                      ...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            999999999999999999998764 3467899999999999999999999999998874 55688899999999999999


Q ss_pred             HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          443 MEMERVYKRMKEKHCR-----------PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       443 ~~a~~~~~~~~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      ++|...|+++.+....           .+...|..+..++...|+.+.+.++.++.+.
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            9999999998865211           1357899999999999999999888776433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=2.1e-18  Score=158.08  Aligned_cols=271  Identities=5%  Similarity=-0.061  Sum_probs=183.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010740          219 STLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN  298 (502)
Q Consensus       219 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (502)
                      ..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|.+.++++++..  +.+...+..+...+..
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHH
Confidence            3344444444555555555554444322 134444444455555555555555555544431  2234444555555555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------H-HH-HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 010740          299 KGQVDMMERWYEKFRNFGIDPETRTFNI-------------L-IG-AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI  363 (502)
Q Consensus       299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  363 (502)
                      .|++++|.+.++++.+.. +.+...+..             + .. .+...|++++|.+.++.+.+.... +...+..+.
T Consensus       102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la  179 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG  179 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence            555555555555554432 111111111             1 22 367788899999999998887655 788889999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 010740          364 EAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLM  443 (502)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  443 (502)
                      ..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence            99999999999999999988764 3457788899999999999999999999988864 556888999999999999999


Q ss_pred             HHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          444 EMERVYKRMKEKHCRP-----------DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       444 ~a~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      +|.+.|+++.+.....           +...|..+..+|.+.|++++|.++++++++..++..+
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            9999999988753221           3678899999999999999999999988877665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=8.2e-19  Score=163.60  Aligned_cols=237  Identities=8%  Similarity=-0.019  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|++.|+++.+..  +.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence            44568888899999999999999999998875 5678889999999999999999999999988743  56688888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010740          223 KACVDAMRFELIETLYQDMDERSVT---------PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTIL  293 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  293 (502)
                      .+|...|++++|...++++.+....         .....+..+...+...|++++|.+.++++++......+...+..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            9999999999999999888764211         0112223345566666666666666666655432222455666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHh
Q 010740          294 SVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK  373 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  373 (502)
                      ..+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +..++..+..+|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence            66666666666666666655532 334455555555555555555555555555554332 3445555555555555555


Q ss_pred             HHHHHHHHHHH
Q 010740          374 HMEYTFEQMHA  384 (502)
Q Consensus       374 ~a~~~~~~m~~  384 (502)
                      +|...|+++.+
T Consensus       299 ~A~~~~~~al~  309 (365)
T 4eqf_A          299 EAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=1.4e-15  Score=147.50  Aligned_cols=332  Identities=11%  Similarity=0.015  Sum_probs=277.6

Q ss_pred             HHHHHHHHHHHh----hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHH
Q 010740          109 NTVAETFSDHVL----KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK----SGQPELARKVFNEMVEEGIEPTPE  180 (502)
Q Consensus       109 ~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~  180 (502)
                      .....+-..+..    .+++++|++.|+...+.+    +...+..|...|..    .+++++|...|++..+.|   +..
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  148 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS  148 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            444555556666    789999999999998875    67788889999988    889999999999998875   577


Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 010740          181 LYTALLAAYCR----NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVT  252 (502)
Q Consensus       181 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  252 (502)
                      .+..+...|..    .+++++|+++|++..+.    .+...+..+...|..    .+++++|.+.|++..+.|   +...
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  221 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELG  221 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHH
Confidence            88888888887    78999999999999874    467888889999988    899999999999998875   5677


Q ss_pred             HHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          253 QNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF  324 (502)
Q Consensus       253 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  324 (502)
                      +..+...|..    .+++++|.++|++..+.    .+...+..+...|..    .+++++|+.+|++..+.|   +...+
T Consensus       222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~  294 (490)
T 2xm6_A          222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ  294 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence            8888888876    88999999999998763    366777888888888    899999999999998754   45677


Q ss_pred             HHHHHHHHcc-----CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740          325 NILIGAYGKK-----RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEGMKADTKTFCC  396 (502)
Q Consensus       325 ~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~  396 (502)
                      ..+...|...     +++++|...|....+.+   +...+..+...|...|   +.++|.+.|++..+.|   +...+..
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  368 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFN  368 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHH
Confidence            7788888876     89999999999998874   5677888888888766   7899999999999864   6788889


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-C-CHHHHHH
Q 010740          397 LINGYAN----AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCR-P-DSETFSI  466 (502)
Q Consensus       397 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~-p-~~~~~~~  466 (502)
                      |...|..    .+++++|..+++...+.+   +...+..|...|..    .++.++|..+|++..+.|.. | +......
T Consensus       369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~  445 (490)
T 2xm6_A          369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT  445 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence            9999998    899999999999998865   56788889999988    89999999999999998643 2 3334444


Q ss_pred             HHHH
Q 010740          467 MTEA  470 (502)
Q Consensus       467 l~~~  470 (502)
                      +...
T Consensus       446 l~~~  449 (490)
T 2xm6_A          446 EKKL  449 (490)
T ss_dssp             HTTS
T ss_pred             HHhc
Confidence            4433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=6.5e-17  Score=156.33  Aligned_cols=370  Identities=11%  Similarity=-0.028  Sum_probs=246.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQ-------PFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G--  174 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--  174 (502)
                      ..+..+...+...|++++|++.|+...+.       ...+....+|+.+..+|...|++++|...+++..+.     +  
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            33444555667789999999999876541       001334568999999999999999999999987653     1  


Q ss_pred             CCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 010740          175 IEPTPELYTALLAAYCRN--SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC---VDAMRFELIETLYQDMDERSVTPN  249 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~  249 (502)
                      ......++..+..++...  +++++|++.|++..+..  +-+...+..+..++   ...++.++|++.+++..+.... +
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~  208 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N  208 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence            122456777776666654  46899999999988753  45566666555553   4467778899999888876433 5


Q ss_pred             HHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010740          250 TVTQNIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFN  325 (502)
Q Consensus       250 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  325 (502)
                      ..++..+...+..    .|++++|.+.+++.++..  +.+...+..+...|...|++++|...+++..+.. +.+..++.
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  285 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC  285 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence            5666665554443    467889999999887653  4567788889999999999999999999998754 55677777


Q ss_pred             HHHHHHHcc-------------------CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740          326 ILIGAYGKK-------------------RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG  386 (502)
Q Consensus       326 ~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  386 (502)
                      .+..+|...                   +.++.|...+....+.... +...+..+...+...|++++|...|++..+..
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            777777542                   2356777788887776554 66778889999999999999999999988764


Q ss_pred             CCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010740          387 MKADTK--TFCCLIN-GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSET  463 (502)
Q Consensus       387 ~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~  463 (502)
                      ..+...  .+..+.. .....|++++|+..|++..+.  .|+.....         +....+.++++.....+ +.+..+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~  432 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEA  432 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTH
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHH
Confidence            333221  2233332 234678999999999988875  34433222         22344556666666653 236789


Q ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740          464 FSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH  497 (502)
Q Consensus       464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  497 (502)
                      |..+..+|...|++++|++.|+++++.++..+..
T Consensus       433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a  466 (472)
T 4g1t_A          433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSA  466 (472)
T ss_dssp             HHHHHHHHHHHHHCC-------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence            9999999999999999999999999987765543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=8.9e-18  Score=153.88  Aligned_cols=241  Identities=11%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      .....+...|++++|+.+|+.+.+..  +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence            33444445555555555555554432  3344455555555555555555555555555442 33444555555555555


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHhccCChHHHH
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIV-LG-GYGKAGMFDQME  270 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~-~~~~~g~~~~a~  270 (502)
                      |++++|++.++++.+..  +.+...+..+...                      .|+......+ .. .+...|++++|.
T Consensus       103 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            55555555555544421  1111111111000                      0000111111 11 255556666666


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      +.++++++..  +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus       159 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          159 TLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             HHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6666665432  2245555566666666666666666666655432 334445555555555555555555555555544


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      ... +...+..+...+...|++++|.+.|+++.+
T Consensus       236 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          236 NPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIY  268 (327)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            322 444555555555555555555555555444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=3.7e-16  Score=153.12  Aligned_cols=343  Identities=7%  Similarity=-0.068  Sum_probs=247.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      +-+...|..++.. .+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|+++...   .|+...|..
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~   84 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKC   84 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHH
Confidence            5578899999984 78999999999999999863 667889999999999999999999999999975   368888887


Q ss_pred             HHHHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCC
Q 010740          221 LIKAC-VDAMRFELIET----LYQDMDE-RSVTP-NTVTQNIVLGGYGK---------AGMFDQMERVLSGMLESATCKP  284 (502)
Q Consensus       221 ll~~~-~~~~~~~~a~~----~~~~~~~-~g~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~  284 (502)
                      ++... ...|+++.|.+    +|+.... .|..| +...|...+....+         .|+++.|..+|++.++. ....
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~  163 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN  163 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence            77543 34577766654    7776654 35443 56778877776654         68899999999998762 1111


Q ss_pred             CHHHHHHHHHHH-------------HhcCCHH------------------------------------------------
Q 010740          285 DVWTMNTILSVF-------------ANKGQVD------------------------------------------------  303 (502)
Q Consensus       285 ~~~~~~~l~~~~-------------~~~g~~~------------------------------------------------  303 (502)
                      ....|.......             ...++++                                                
T Consensus       164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~  243 (530)
T 2ooe_A          164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN  243 (530)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence            122222211100             0111222                                                


Q ss_pred             ------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCcHH-------HHHHHHHHHHHcCCCCChH
Q 010740          304 ------------MMERWYEKFRNFGIDPETRTFNILIGAYGK-------KRMYD-------KMSSVMEYMRKLQFPWTSS  357 (502)
Q Consensus       304 ------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~  357 (502)
                                  ++..+|++.+... +.+...|..++..+.+       .|+++       +|..++++..+.-.+.+..
T Consensus       244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~  322 (530)
T 2ooe_A          244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML  322 (530)
T ss_dssp             SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred             CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence                        3344454444432 3445566666666654       68876       8899999888632334688


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD-T-KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      .|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|.++|+.+.+.. +.+...|...+..
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~  399 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM  399 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence            8999999999999999999999999885  454 2 478888888888999999999999988753 2333434333322


Q ss_pred             -HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          436 -CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       436 -~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                       +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++++...+.+
T Consensus       400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence             336899999999999888763 2368889999999999999999999999999875443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=3.4e-17  Score=146.57  Aligned_cols=276  Identities=10%  Similarity=0.048  Sum_probs=201.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDV--YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA  263 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  263 (502)
                      ++.....|++..|+..++++...   .|+.  .....+..+|...|+++.|...++.    .-+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence            45566789999999988887653   3443  3455677888999999988876644    2355777888888888889


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV  343 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  343 (502)
                      ++.++|++.+++++.....+.+...+..+..++...|++++|++.+++      +.+...+..++..|.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999998876421233566677777888899999999998876      56777888888889999999999999


Q ss_pred             HHHHHHcCCCCChHHH---HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          344 MEYMRKLQFPWTSSTY---NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       344 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      ++.+.+...  +....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.
T Consensus       153 l~~~~~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          153 LKKMQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            998888753  32211   122333445588889999998888763 457778888888888889999999888888876


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740          421 QIAENVSFYNAVISACIKADDLME-MERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYAL  483 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  483 (502)
                      . +.+..++..++..+...|+.++ +.++++++.+..  |+....   .....+.+.+|++..-
T Consensus       230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~---~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI---KEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH---HHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHHHHH
Confidence            4 5677788888888888888765 567888888753  443322   3345555556655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=1e-16  Score=143.55  Aligned_cols=274  Identities=11%  Similarity=0.023  Sum_probs=207.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010740          151 LVLLGKSGQPELARKVFNEMVEEGIEPTP--ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDA  228 (502)
Q Consensus       151 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  228 (502)
                      ++.....|++..|+..++.....  .|+.  .....+.++|...|++++|+..++..     .+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCC
Confidence            45566789999999988876543  3433  35566788999999999998766442     256777888888899999


Q ss_pred             CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010740          229 MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMER  307 (502)
Q Consensus       229 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  307 (502)
                      ++.++|.+.++++...+..| +...+..+...+...|++++|++.+++       ..+...+..++..+.+.|++++|.+
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~  151 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK  151 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999988876544 556677777889999999999998876       3577888889999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHH---HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          308 WYEKFRNFGIDPETRTF---NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       308 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      .|+++.+..  |+....   ..++..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|...|++..+
T Consensus       152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999998764  443211   2233445566899999999999988844 4888899999999999999999999999887


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740          385 EGMKADTKTFCCLINGYANAGLFHK-VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER  447 (502)
Q Consensus       385 ~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  447 (502)
                      .. +-+..++..++..+...|+.++ +.++++++.+.. |.+..    +.+...+.+.++++..
T Consensus       229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----IKEYRAKENDFDRLVL  286 (291)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----HHHHHHHHHHHHHHHH
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----HHHHHHHHHHHHHHHH
Confidence            64 3367788889989999998875 568888888753 33333    2334445555555543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.79  E-value=1.9e-15  Score=154.11  Aligned_cols=331  Identities=11%  Similarity=0.135  Sum_probs=254.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPF-YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      +.+..+.+.+...|.+.+|+++++.+.-.+. +.-+....+.++.+..+. +..+..+..+++...    +   ...+..
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~ 1057 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIAN 1057 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHH
Confidence            4555677888889999999999998874431 223445666677666666 556666666665421    1   344778


Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      .+...|.+++|..+|++...      .....+.++.   ..+++++|.++.++..      +..+|..+..++.+.|+++
T Consensus      1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHH
Confidence            88889999999999998632      2222333332   6788999999988652      5788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM  347 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  347 (502)
                      +|.+.|.+.       .|...|..++.+|.+.|++++|.++|....+..  ++....+.++.+|++.+++++...+.   
T Consensus      1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A         1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred             HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence            999999654       377888889999999999999999999877654  34334445889999999888644442   


Q ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH
Q 010740          348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS  427 (502)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  427 (502)
                       +   .++...|..+...|...|++++|..+|...         ..|..+...|.+.|++++|.+.+++.      .+..
T Consensus      1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A         1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred             -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence             1   236677778999999999999999999985         37889999999999999999999876      4568


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      +|..+..+|...|++..|......+.     .++..+..++..|.+.|.+++|+.+++.+++..+...+.|
T Consensus      1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence            89999999999999999888765433     3677888999999999999999999999988766555555

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.9e-18  Score=157.96  Aligned_cols=307  Identities=14%  Similarity=0.106  Sum_probs=124.4

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF  199 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  199 (502)
                      ..|++++|.++++.+       ++..+|..|+.++.+.|++++|.+.|.+      .+|...|..++.++...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence            456788888888775       2234888888888888888888888854      256667888888888888888888


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740          200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES  279 (502)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  279 (502)
                      .+++...+.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|...|..+   
T Consensus        82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---  148 (449)
T 1b89_A           82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred             HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence            877666652   3556677778888888888888777764       256668888888888888888888888766   


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHH
Q 010740          280 ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTY  359 (502)
Q Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  359 (502)
                             ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.-.
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l  210 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL  210 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence                   25777888888888888888888776      2577788888888888888888544333     22244445


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCC------ChHHHHH
Q 010740          360 NNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA--GLFHKVISSVRLASKLQIAE------NVSFYNA  431 (502)
Q Consensus       360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~  431 (502)
                      ..++..|.+.|++++|..+++...... +-....|+-|..+|++-  +++.+.++.|.  .+.++++      +...|..
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHH
Confidence            567777888888888888888777554 44556777776666654  23333333333  1223333      4566777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 010740          432 VISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMND  478 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~  478 (502)
                      ++..|.+.++++.|..   .|.+.  .|+.---....+...+..+.+
T Consensus       288 ~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e  329 (449)
T 1b89_A          288 LVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE  329 (449)
T ss_dssp             HHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred             HHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence            7777777777777654   45554  223222223344444555544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=7.4e-16  Score=148.91  Aligned_cols=336  Identities=13%  Similarity=0.010  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhC-----CCCC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQ-----PFYQ-PKEGTYMKLLVLLGKS--GQPELARKVFNEMVEEGIEPTPEL  181 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~  181 (502)
                      ++..+...+...|++++|+..|+.+.+.     +... ....++..+..++...  +++++|...|++..+.. +-+...
T Consensus        96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~  174 (472)
T 4g1t_A           96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEF  174 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHH
Confidence            4455666778899999999999987542     1111 2356777777666654  46999999999999875 445666


Q ss_pred             HHHHHHH---HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010740          182 YTALLAA---YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVTQN  254 (502)
Q Consensus       182 ~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~  254 (502)
                      +..+..+   +...++.++|++.+++..+..  +.+..++..+...+..    .+++++|.+++++...... .+..++.
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~  251 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLR  251 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHH
Confidence            6665555   445688899999999988753  5667777777666654    4678899999999887643 3778899


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhC
Q 010740          255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK-------------------GQVDMMERWYEKFRNF  315 (502)
Q Consensus       255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~  315 (502)
                      .+...|...|++++|.+.+++.++..  +.+..++..+..+|...                   +.+++|...+++..+.
T Consensus       252 ~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  329 (472)
T 4g1t_A          252 SAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA  329 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            99999999999999999999998753  34567777777777543                   2356788888888775


Q ss_pred             CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChH--HHHHHHH-HHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 010740          316 GIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSS--TYNNVIE-AFSDMGDAKHMEYTFEQMHAEGMKADTK  392 (502)
Q Consensus       316 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~  392 (502)
                      . +.+...+..+...|...|++++|...|++..+....+...  .+..+.. .....|+.++|+..|++..+.  .|+..
T Consensus       330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~  406 (472)
T 4g1t_A          330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR  406 (472)
T ss_dssp             C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred             C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence            4 5566778889999999999999999999998876543221  2333332 245689999999999999885  45543


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RPDSETF  464 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~~~~~  464 (502)
                      ....         ....+.++++...+.. +.+..+|..+..+|...|++++|++.|++..+.|. -|+..+|
T Consensus       407 ~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          407 EKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            2222         2234455566665554 66788999999999999999999999999998653 2444443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=5.3e-18  Score=155.01  Aligned_cols=342  Identities=11%  Similarity=0.095  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740           91 IKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM  170 (502)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  170 (502)
                      +++.....++.+....|    ..+..++...|++++|++.|.+.       +|..+|..++..+...|++++|...++..
T Consensus        19 ld~A~~fae~~~~~~vW----s~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a   87 (449)
T 1b89_A           19 LDRAYEFAERCNEPAVW----SQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA   87 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCChHHH----HHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            44445555555555444    45667788889999999998642       36668888888999999999999977777


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010740          171 VEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT  250 (502)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~  250 (502)
                      ++.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|...|..+         
T Consensus        88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------  148 (449)
T 1b89_A           88 RKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------  148 (449)
T ss_dssp             -----------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------
T ss_pred             HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence            664  4567788889999999999988887763        256668999999999999999999999876         


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA  330 (502)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  330 (502)
                      ..|..++.++.+.|++++|.+.+.++       .++.+|..++.+|+..|+++.|......     +.....-...++..
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~  216 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY  216 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence            36888899999999999999999877       2788899999999999999999655443     22333445568888


Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCHhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHH
Q 010740          331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM--GDAKHMEYTFEQMHAEGMKA------DTKTFCCLINGYA  402 (502)
Q Consensus       331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~~~~~~p------~~~~~~~l~~~~~  402 (502)
                      |.+.|++++|..+++...... +-....|+.+.-.|++-  +++.+.++.|..  +..++|      +...|..+.-.|.
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887765 33677788887777764  344444444432  112222      2345777777777


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740          403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      ..++++.|..   .|.+.  +++..--..+.+...+..+.+--.+...-..+.    .+...+-|+.++...=+..+++.
T Consensus       294 ~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~  364 (449)
T 1b89_A          294 KYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVN  364 (449)
T ss_dssp             HTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHH
T ss_pred             hhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHH
Confidence            8888887765   33332  334333444555556666665544444433432    23335666666655556666666


Q ss_pred             HHHH
Q 010740          483 LEQE  486 (502)
Q Consensus       483 ~~~~  486 (502)
                      ++++
T Consensus       365 ~~~~  368 (449)
T 1b89_A          365 YFSK  368 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.74  E-value=5e-18  Score=167.49  Aligned_cols=116  Identities=11%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHH
Q 010740          286 VWTMNTILSVFANKGQVDMMERWYEKFRN---FGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNV  362 (502)
Q Consensus       286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  362 (502)
                      ..+|+++|.+|++.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            34566666666666666666666655542   355666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          363 IEAFSDMGD-AKHMEYTFEQMHAEGMKADTKTFCCLINGY  401 (502)
Q Consensus       363 ~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  401 (502)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~  246 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE  246 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence            666666655 355666666666666666666666555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.74  E-value=4e-18  Score=168.18  Aligned_cols=152  Identities=12%  Similarity=0.154  Sum_probs=113.6

Q ss_pred             CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010740          319 PETRTFNILIGAYGKKRMYDKMSSVMEYMRK---LQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC  395 (502)
Q Consensus       319 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  395 (502)
                      .-..||++||++|++.|++++|.++|.+|.+   .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            3456888888888888888888888877653   4778888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCCh-HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 010740          396 CLINGYANAGLF-HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD------SETFSIMT  468 (502)
Q Consensus       396 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~------~~~~~~l~  468 (502)
                      ++|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+.    .+++.++++ .-++.|+      ..+...|.
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~  279 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR  279 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence            888888888874 67888888888888888888888887665543    233333333 2244444      44555566


Q ss_pred             HHHHhcC
Q 010740          469 EAYAKEG  475 (502)
Q Consensus       469 ~~~~~~g  475 (502)
                      +.|.+.+
T Consensus       280 dl~s~d~  286 (1134)
T 3spa_A          280 DVYAKDG  286 (1134)
T ss_dssp             HHHCCCS
T ss_pred             HHHccCC
Confidence            6666554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1.1e-15  Score=134.68  Aligned_cols=227  Identities=11%  Similarity=0.010  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCC----HHHHH
Q 010740          216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESAT-CKPD----VWTMN  290 (502)
Q Consensus       216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~  290 (502)
                      ..+..+...+...|++++|...|+++.+..  .+...+..+..++...|++++|.+.+++.++... ..++    ...+.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            345555556666666666666666655554  4555555666666666666666666655543210 0011    34455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 010740          291 TILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG  370 (502)
Q Consensus       291 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  370 (502)
                      .+...+...|++++|...|+++...  .|+.                                          ..+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~  119 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLR  119 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHh
Confidence            5555555555555555555555442  2221                                          2233344


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYK  450 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  450 (502)
                      ++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+..+|..+..+|...|++++|...|+
T Consensus       120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4555555555544431 1123344555555555555566655555555543 3345555566666666666666666666


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          451 RMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       451 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ++.+... .+...|..+..+|.+.|++++|.+.++++++..
T Consensus       198 ~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          198 KAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            6655421 245556666666666666666666666666655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=1.8e-15  Score=129.38  Aligned_cols=197  Identities=12%  Similarity=0.009  Sum_probs=112.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE  364 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  364 (502)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence            33444455555555555555555555555433 344455555555555555555555555555554433 4455555555


Q ss_pred             HHHhc-----------CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740          365 AFSDM-----------GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI  433 (502)
Q Consensus       365 ~~~~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  433 (502)
                      ++...           |++++|...|++..+.. +-+...+..+..++...|++++|+..++++.+..  .+...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            55555           77777777777766642 2245566667777777777777777777777665  5666677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          434 SACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       434 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      .+|...|++++|+..|++..+... .+...+..+...+.+.|++++|++.+++.
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777777777777777777776532 25666777777777777777777777654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=4.3e-14  Score=125.69  Aligned_cols=229  Identities=10%  Similarity=0.016  Sum_probs=158.9

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN----KGQVDMMERWYEKFRNFGIDPETRTF  324 (502)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~  324 (502)
                      +..++..+...|...|++++|.+.|++..+    ..+...+..+...|..    .+++++|..+|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            344555556666666666666666666654    2244555666666666    666666666666666654   45566


Q ss_pred             HHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010740          325 NILIGAYGK----KRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCC  396 (502)
Q Consensus       325 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~  396 (502)
                      ..+...|..    .+++++|...|+...+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            666666666    677777777777666653   55666777777777    777777777777777654   4566666


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740          397 LINGYAN----AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       397 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~  468 (502)
                      +...|..    .+++++|...++...+.+   +...+..+...|..    .+++++|++.|++..+.+   +...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            7777776    778888888888777653   45667777778888    888888888888888764   366777778


Q ss_pred             HHHHh----cCCcHHHHHHHHHHHHhhhhccc
Q 010740          469 EAYAK----EGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       469 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      ..|.+    .+++++|++.++++.+.++....
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            88887    88888888888888888766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=1.5e-13  Score=140.45  Aligned_cols=317  Identities=13%  Similarity=0.163  Sum_probs=250.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ...+...|.+++|..+|++...      .....+.++.   ..|++++|.++.++.      -+..+|..+..++.+.|+
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence            4456678999999999998631      2233344433   778899999998865      458889999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                      +++|++.|.+.       .|...|..++.+|.+.|++++|.+.+....+..-  +....+.++.+|++.+++++..... 
T Consensus      1121 ~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A         1121 VKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred             HHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH-
Confidence            99999999663       4667788899999999999999999998877642  3333345888999999988644332 


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 010740          275 GMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW  354 (502)
Q Consensus       275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  354 (502)
                         +    .++...|..+...|...|++++|..+|...         ..|..+..+|.+.|++++|.+.+.+.      .
T Consensus      1191 ---~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A         1191 ---N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred             ---h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence               2    356677888999999999999999999985         37999999999999999999999877      2


Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS  434 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  434 (502)
                      +..+|..+..+|...|++..|......     +..+...+..++..|.+.|.+++|+.+++...... +-....|+-|..
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence            779999999999999999999887664     33466778899999999999999999999888765 556777877887


Q ss_pred             HHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 010740          435 ACIKA--DDLMEMERVYKRMKEKHCRP------DSETFSIMTEAYAKEGMNDKVYALEQE  486 (502)
Q Consensus       435 ~~~~~--g~~~~a~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~  486 (502)
                      +|.+.  ++..++.++|..-..  ++|      +...|.-++-.|.+.|++++|+...-+
T Consensus      1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            77764  455566666654332  222      567899999999999999999854433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.3e-15  Score=130.86  Aligned_cols=225  Identities=11%  Similarity=0.050  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHH
Q 010740          179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT--PN----TVT  252 (502)
Q Consensus       179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~  252 (502)
                      ...+..+...+...|++++|+..|+++.+..   .+...+..+..++...|++++|...+++..+....  ++    ..+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            5678889999999999999999999998863   77889999999999999999999999998875321  12    578


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010740          253 QNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYG  332 (502)
Q Consensus       253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  332 (502)
                      +..+...|...|++++|.+.|++.++.   .|+.       ..+...|++++|...++++.... +.+...+..+...+.
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence            899999999999999999999999875   4553       44667788899999999888743 344556677777777


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010740          333 KKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVIS  412 (502)
Q Consensus       333 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  412 (502)
                      ..|++++|...++.+.+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|..
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            777777777777777765443 55666666666666666666666666666542 2234555555555556666666665


Q ss_pred             HHHHHHh
Q 010740          413 SVRLASK  419 (502)
Q Consensus       413 ~~~~~~~  419 (502)
                      .++.+.+
T Consensus       229 ~~~~a~~  235 (258)
T 3uq3_A          229 TLDAART  235 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.71  E-value=5.8e-16  Score=147.86  Aligned_cols=349  Identities=11%  Similarity=0.035  Sum_probs=230.0

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP---ELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +...+.+.|++++|+++|+.+.+.+    +..++..|...|...|+.   ++|...|++..+.    +...+..+...+.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            3445567899999999999988766    344666677777778888   8999999998853    5666777777566


Q ss_pred             hCC-----CHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010740          191 RNS-----LIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE---LIETLYQDMDERSVTPNTVTQNIVLGGYGK  262 (502)
Q Consensus       191 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  262 (502)
                      ..+     ++++|+.+|++..+. + .++  .+..|...|...+..+   .+.+.+......|   +...+..+...|..
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~-g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~  153 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFAN-G-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT  153 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHT-T-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHC-C-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence            655     788999999999875 2 233  5666777777665433   3455555555444   34566677777777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----C
Q 010740          263 AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG---QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK----R  335 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g  335 (502)
                      .+.++++......+.+.. ...+...+..+...|...|   +.++|+++|++..+.| +++...+..|...|...    +
T Consensus       154 ~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~  231 (452)
T 3e4b_A          154 QGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP  231 (452)
T ss_dssp             HTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred             CCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence            775555444433222110 1123337788888888899   8899999999998877 56666666777777654    6


Q ss_pred             cHHHHHHHHHHHHHcCCCCChHHHHHHHHH-H--HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Ch
Q 010740          336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEA-F--SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-----LF  407 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~  407 (502)
                      ++++|.+.|+... .   -+...+..+... +  ...+++++|.+.|++..+.|   +...+..|...|. .|     ++
T Consensus       232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred             CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence            8899999999877 2   356677777776 4  45789999999999998876   6777777887777 45     89


Q ss_pred             HHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHH
Q 010740          408 HKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDK  479 (502)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~  479 (502)
                      ++|.++|+...    +.+...+..|...|..    ..++++|.++|++..+.|.   ......|...|..    ..+.++
T Consensus       304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~  376 (452)
T 3e4b_A          304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN  376 (452)
T ss_dssp             HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence            99999998777    3456677777777766    3489999999999988763   4455566666664    457889


Q ss_pred             HHHHHHHHHHhhhhc
Q 010740          480 VYALEQEKLQMLLEA  494 (502)
Q Consensus       480 A~~~~~~~~~~~~~~  494 (502)
                      |..+++++.+.+...
T Consensus       377 A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          377 AYVFSQLAKAQDTPE  391 (452)
T ss_dssp             HHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHCCCHH
Confidence            999999988876543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=2.9e-15  Score=128.11  Aligned_cols=198  Identities=12%  Similarity=0.031  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010740          249 NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILI  328 (502)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  328 (502)
                      +...+..+...+.+.|++++|...|++.++..  +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34444555555555555555555555554321  2244445555555555555555555555555433 33444555555


Q ss_pred             HHHHcc-----------CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          329 GAYGKK-----------RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL  397 (502)
Q Consensus       329 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  397 (502)
                      .++...           |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            555555           7777777777777766544 56667777777777777777777777777665  566677777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      ..+|...|++++|+..++.+.+.. +.+...+..+..++...|++++|+..|++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            777777777777777777777653 4566667777777777777777777776553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.69  E-value=5.1e-15  Score=131.62  Aligned_cols=239  Identities=13%  Similarity=-0.005  Sum_probs=123.2

Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 010740          254 NIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDP--ETRTFNILIGAY  331 (502)
Q Consensus       254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~  331 (502)
                      ......+...|++++|+..|++.++..  +.+...+..+..++...|++++|+..++++.+....+  ....|..+...|
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            334444555555555555555554432  1122344445555555555555555555555421111  122345555555


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI  411 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  411 (502)
                      ...|++++|.+.|+...+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555554433 44555556666666666666666665555441 223444444442333334666666


Q ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCcHHHH
Q 010740          412 SSVRLASKLQIAENVSFYNAVISACIKADD---LMEMERVYKRMKEKH-CRPD------SETFSIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~  481 (502)
                      +.++.+.+.. +.+...+..+..++...|+   +++|...++++.+.. -.|+      ...|..+...|.+.|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666665543 3334555555555555555   555666655555431 0112      135555666666666666666


Q ss_pred             HHHHHHHHhhhhcccc
Q 010740          482 ALEQEKLQMLLEASGH  497 (502)
Q Consensus       482 ~~~~~~~~~~~~~~~~  497 (502)
                      +.++++++..|.+...
T Consensus       242 ~~~~~al~~~p~~~~a  257 (272)
T 3u4t_A          242 AAWKNILALDPTNKKA  257 (272)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcCccHHHH
Confidence            6666666666555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.69  E-value=1.4e-14  Score=127.20  Aligned_cols=202  Identities=6%  Similarity=-0.043  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      +..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++++.+.... +...+..+...+..
T Consensus        40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  117 (252)
T 2ho1_A           40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHH
Confidence            3334444444444444444444444322 233444444444455555555555555544444322 44455555555555


Q ss_pred             cCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740          369 MGDAKHMEYTFEQMHAEGMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER  447 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  447 (502)
                      .|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|..
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555555422223 23445555555666666666666666555543 3345556666666666666666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +++++.+.. +.+...+..+...+...|++++|.+.++++.+..+.+
T Consensus       197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            666665542 2345555666666666666666666666666655543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=1e-14  Score=134.96  Aligned_cols=231  Identities=8%  Similarity=-0.021  Sum_probs=152.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010740          214 DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM-FDQMERVLSGMLESATCKPDVWTMNTI  292 (502)
Q Consensus       214 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l  292 (502)
                      +...|..+..++...|++++|++.++++++.... +...|+.+..++...|+ +++|+..|+++++..  +.+...|..+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence            4556777777788888888888888888776433 66777777778888885 888888888877653  3356777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC
Q 010740          293 LSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD-MGD  371 (502)
Q Consensus       293 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  371 (502)
                      ..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence            777777777777777777777654 556667777777777777777777777777776655 66777777777766 444


Q ss_pred             HhHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC----
Q 010740          372 AKHM-----EYTFEQMHAEGMKADTKTFCCLINGYANAG--LFHKVISSVRLASKLQIAENVSFYNAVISACIKAD----  440 (502)
Q Consensus       372 ~~~a-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----  440 (502)
                      .++|     +..|++.++.. +-+...|..+...+...|  ++++|++.+..+ +. .+.+...+..++.+|.+.|    
T Consensus       251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence            4555     35566655542 123445555555555555  456666665555 22 2344555556666665542    


Q ss_pred             -----CHHHHHHHHHHH
Q 010740          441 -----DLMEMERVYKRM  452 (502)
Q Consensus       441 -----~~~~a~~~~~~~  452 (502)
                           .+++|+++|+++
T Consensus       328 ~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          328 DNKEDILNKALELCEIL  344 (382)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHH
Confidence                 135566666665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.68  E-value=4.1e-14  Score=121.68  Aligned_cols=202  Identities=9%  Similarity=0.001  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      +..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.... +...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence            3333444444444444444444443322 223334444444444444444444444444443222 34444444444444


Q ss_pred             c-CCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740          369 M-GDAKHMEYTFEQMHAEGMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       369 ~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  446 (502)
                      . |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence            4 555555555554444211222 2344445555555555555555555554432 233445555555555555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       447 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ++++++.+.....+...+..+...+...|+.++|..+++.+.+..|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            55555554322124444545555555555555555555555554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.67  E-value=7.2e-15  Score=128.20  Aligned_cols=203  Identities=10%  Similarity=0.057  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFS  367 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  367 (502)
                      .|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|.+.++.+.+.... +...+..+...+.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence            34444444445555555555555554422 333444555555555555555555555555444332 4455555555555


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 010740          368 DMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMER  447 (502)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  447 (502)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555555442 2244455555555556666666666665555542 3345555556666666666666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          448 VYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       448 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .|+++.+... .+..++..+..+|.+.|++++|.+.++++++..+++.
T Consensus       181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence            6666655422 2455566666666666666666666666666555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=2.7e-15  Score=133.57  Aligned_cols=223  Identities=15%  Similarity=0.060  Sum_probs=148.8

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQ--PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      ..|++++|+..|+.+.+.....  .+..++..+...+...|++++|...|+++.+.. +.+..+|..+..++...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            4588889999998887753111  135577888888888888988888888888764 4567888888888888888888


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      |++.|+++.+..  +.+...+..+..++...|++++|...++++.+..  |+.......+..+...|++++|...++...
T Consensus        96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888888887742  4566778888888888888888888888877653  333333444445556677777777776665


Q ss_pred             HcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          278 ESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      ...  .++...+ .++..+...++.++|...+++.......   .+..++..+...|.+.|++++|...|+.+.+.
T Consensus       172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            542  2232233 3555566666667777777666532110   01344555555555566666666666555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.67  E-value=2.5e-14  Score=127.11  Aligned_cols=192  Identities=15%  Similarity=0.089  Sum_probs=77.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP--NTVTQNIVLGGYGKA  263 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~  263 (502)
                      ...+...|++++|+..|+++.+..  +.+...+..+..++...|++++|...+++..+.+..+  ....|..+...+...
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            334444444444444444443321  2222234444444444444444444444444321111  112244444444444


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV  343 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  343 (502)
                      |++++|.+.|++.++..  +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|.+.
T Consensus        88 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444321  1123344444444444444444444444444331 22333333333122222344444444


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCC---HhHHHHHHHHHH
Q 010740          344 MEYMRKLQFPWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMH  383 (502)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~  383 (502)
                      |+.+.+.... +...+..+..++...|+   +++|...|++..
T Consensus       165 ~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          165 FVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             HHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            4444443322 33344444444444444   444444444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=4.9e-14  Score=123.67  Aligned_cols=201  Identities=7%  Similarity=-0.005  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+......+...|++++|++.|+.+.+..  +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            344445556667788888888888777653  4566778888888888888888888888877764 4467777778888


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      +...|++++|+++|+++.+.+..+.+...+..+..++...|++++|.+.++++.+... .+...+..+...|...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888766211133456677777777778888888888877776532 256677777777777777777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF  315 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  315 (502)
                      |...++++++..  +.+...+..+...+...|++++|.+.++++.+.
T Consensus       194 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            777777776532  345566667777777777777777777777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=3.9e-14  Score=130.99  Aligned_cols=231  Identities=10%  Similarity=0.025  Sum_probs=174.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL-IDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      +..+|..+..++...|++++|+..|+++++.. +-+..+|+.+..++...|+ +++|+..|+++.+..  +.+...|..+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence            35578888899999999999999999999875 5668889999999999996 999999999998753  6678889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cC
Q 010740          222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFAN-KG  300 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g  300 (502)
                      ..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++..  ..+...|+.+..++.. .|
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999998887544 77888888888889999999999999888753  3467788888888888 55


Q ss_pred             CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---
Q 010740          301 QVDMM-----ERWYEKFRNFGIDPETRTFNILIGAYGKKR--MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG---  370 (502)
Q Consensus       301 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  370 (502)
                      ..++|     +..|++.+... +-+...|..+...+...|  ++++|.+.+..+ +.. +.+...+..++.+|.+.|   
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~  326 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ  326 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence            54666     46677666643 445666777776676666  466776666665 322 225556666666666543   


Q ss_pred             ------CHhHHHHHHHHH
Q 010740          371 ------DAKHMEYTFEQM  382 (502)
Q Consensus       371 ------~~~~a~~~~~~m  382 (502)
                            ..++|.++|+++
T Consensus       327 ~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          327 CDNKEDILNKALELCEIL  344 (382)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHH
Confidence                  135566666665

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.65  E-value=7.7e-13  Score=117.57  Aligned_cols=228  Identities=9%  Similarity=0.001  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010740          178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVTPNTVTQ  253 (502)
Q Consensus       178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~  253 (502)
                      +..++..+...+...|++++|++.|++..+    +.+...+..+...+..    .+++++|...|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            344444555555555555555555555544    1233444445555555    555555555555554443   34444


Q ss_pred             HHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          254 NIVLGGYGK----AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIG  329 (502)
Q Consensus       254 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  329 (502)
                      ..+...|..    .+++++|++.|++..+.    .+...+..+...|...                              
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~------------------------------  123 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDG------------------------------  123 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcC------------------------------
Confidence            444444444    45555555555544432    1344444444444440                              


Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN--  403 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--  403 (502)
                       ....+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..  
T Consensus       124 -~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~  196 (273)
T 1ouv_A          124 -KVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE  196 (273)
T ss_dssp             -SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred             -CCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence             000444555555554444432   33444444444444    555555555555555432   33444555555555  


Q ss_pred             --cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 010740          404 --AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       404 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g  456 (502)
                        .+++++|...++...+.+   +...+..+..+|..    .+++++|.+.|++..+.|
T Consensus       197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence              555555555555555543   13444555555555    556666666666655543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=2.4e-14  Score=124.85  Aligned_cols=197  Identities=13%  Similarity=0.045  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      .|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+..  +.+...+..+...+
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~  101 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVY  101 (243)
T ss_dssp             -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHH
Confidence            33344444444444444444444444332 2234444444444444444444444444443321  22334444444444


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740          226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM  305 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  305 (502)
                      ...|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++++..  +.+...+..+...+...|++++|
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHH
Confidence            444444444444444443321 133344444444444444444444444443321  12333344444444444444444


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          306 ERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      ...++++.+.. +.+..++..+..+|...|++++|.+.++.+.+
T Consensus       179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            44444443322 22233344444444444444444444444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=1.8e-14  Score=128.28  Aligned_cols=248  Identities=8%  Similarity=-0.074  Sum_probs=192.1

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          226 VDAMRFELIETLYQDMDERSVT---PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV  302 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (502)
                      ...|++++|+..++++.+....   .+..++..+...+...|++++|.+.|+++++..  +.+...+..+..++...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCH
Confidence            4567899999999999886421   246678889999999999999999999998763  34688899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010740          303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQM  382 (502)
Q Consensus       303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  382 (502)
                      ++|...|+++.+.. +.+...+..+..+|...|++++|...++.+.+...  +.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999998864 55678899999999999999999999999988654  3334444455557779999999999888


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010740          383 HAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIA---ENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP  459 (502)
Q Consensus       383 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p  459 (502)
                      .... +++...+ .++..+...++.++|...++.+......   .+..++..+...|...|++++|...|+++.+..  |
T Consensus       171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p  246 (275)
T 1xnf_A          171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V  246 (275)
T ss_dssp             HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred             HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence            7653 3333333 4677778888889999999887664311   125778889999999999999999999999863  4


Q ss_pred             CHHHHHHHHHHHHhcCCcHHHHHHH
Q 010740          460 DSETFSIMTEAYAKEGMNDKVYALE  484 (502)
Q Consensus       460 ~~~~~~~l~~~~~~~g~~~~A~~~~  484 (502)
                      +.  +.....++...|++++|++.+
T Consensus       247 ~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          247 HN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             TT--CHHHHHHHHHHHHHHHC----
T ss_pred             hh--HHHHHHHHHHHHHHHhhHHHH
Confidence            22  333356778888999888776

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=2e-13  Score=117.31  Aligned_cols=164  Identities=10%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      ..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..  +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~   85 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence            344555555555555555555555555442 2334445555555555555555555555544421  2334444444444


Q ss_pred             HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          225 CVDA-MRFELIETLYQDMDERSVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV  302 (502)
Q Consensus       225 ~~~~-~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (502)
                      +... |++++|...++++.+.+..| +...+..+...+...|++++|...++++++..  +.+...+..+..++...|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence            4444 45555555444444411111 12334444444444444444444444443321  11233344444444444444


Q ss_pred             HHHHHHHHHHH
Q 010740          303 DMMERWYEKFR  313 (502)
Q Consensus       303 ~~a~~~~~~~~  313 (502)
                      ++|...++++.
T Consensus       164 ~~A~~~~~~~~  174 (225)
T 2vq2_A          164 GDADYYFKKYQ  174 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.64  E-value=8.8e-15  Score=138.23  Aligned_cols=304  Identities=13%  Similarity=0.013  Sum_probs=171.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC---CC-C
Q 010740          141 QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT----PELYTALLAAYCRNSLIDEAFVTLNQMKTLP---NC-Q  212 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~  212 (502)
                      ......+......+...|++++|...|+++.+.+ +.+    ..++..+...+...|++++|...+++.....   +. +
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            3455566677777777777777777777777663 223    2456667777777777777777777654320   00 1


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCC--------------------hH
Q 010740          213 PDVYTYSTLIKACVDAMRFELIETLYQDMDERSVT-PN----TVTQNIVLGGYGKAGM--------------------FD  267 (502)
Q Consensus       213 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~l~~~~~~~g~--------------------~~  267 (502)
                      ....++..+...+...|++++|...+++..+.... .+    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            11334555666666666666666666665442100 01    2244444555555555                    44


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPETRTFNILIGAYGKKRMYDKMSSVMEY  346 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  346 (502)
                      +|.+.+++.++..                                ...+. +....++..+...|...|++++|...+++
T Consensus       165 ~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (406)
T 3sf4_A          165 AAVDFYEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ  212 (406)
T ss_dssp             HHHHHHHHHHHHH--------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4444444332210                                00010 01123445555555666666666666655


Q ss_pred             HHHcCCC-CC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740          347 MRKLQFP-WT----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRL  416 (502)
Q Consensus       347 ~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (502)
                      ..+.... ++    ..++..+...+...|++++|...+++..+... ..+    ..++..+...|...|++++|...++.
T Consensus       213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  292 (406)
T 3sf4_A          213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK  292 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5432111 01    23566666677777777777777766653210 011    34666777777788888888888776


Q ss_pred             HHhcCC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCc
Q 010740          417 ASKLQI-----AENVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSETFSIMTEAYAKEGMN  477 (502)
Q Consensus       417 ~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~  477 (502)
                      +.+...     .....++..+..+|...|++++|.+.+++..+.    +..+ ...++..+...+...|+.
T Consensus       293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            655311     111456777788888888888888888876643    1111 244566677777777765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.62  E-value=7.1e-14  Score=131.99  Aligned_cols=277  Identities=11%  Similarity=0.030  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCC-CHH
Q 010740          216 YTYSTLIKACVDAMRFELIETLYQDMDERSVTPN----TVTQNIVLGGYGKAGMFDQMERVLSGMLES---ATCKP-DVW  287 (502)
Q Consensus       216 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~  287 (502)
                      ..+......+...|++++|...|+++.+.+.. +    ..++..+...|...|++++|...+++.++.   .+..+ ...
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            33444444444445555555555444443211 1    133444444555555555555555443221   00000 123


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCc--------------------HHHHHH
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFG-----IDPETRTFNILIGAYGKKRM--------------------YDKMSS  342 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~  342 (502)
                      .+..+...+...|++++|...+++..+..     ......++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            44455555555666666665555554311     00113355666666666777                    777777


Q ss_pred             HHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHH
Q 010740          343 VMEYMRKL----QF-PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVIS  412 (502)
Q Consensus       343 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~  412 (502)
                      .+....+.    +. .....++..+...+...|++++|...+++..+... .++    ..++..+...|...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            77665432    11 11235788888999999999999999998875311 122    2378888999999999999999


Q ss_pred             HHHHHHhcCCC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCcHHHHH
Q 010740          413 SVRLASKLQIA-E----NVSFYNAVISACIKADDLMEMERVYKRMKEKHCR-PD----SETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       413 ~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      .++...+.... .    ...++..+...|...|++++|.+.+++..+.... .+    ..++..+...|...|++++|.+
T Consensus       249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99987754211 1    1567888999999999999999999988754111 12    5578889999999999999999


Q ss_pred             HHHHHHHhhhh
Q 010740          483 LEQEKLQMLLE  493 (502)
Q Consensus       483 ~~~~~~~~~~~  493 (502)
                      .++++++....
T Consensus       329 ~~~~al~~~~~  339 (406)
T 3sf4_A          329 FAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.61  E-value=4.2e-14  Score=133.92  Aligned_cols=282  Identities=11%  Similarity=0.026  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCH
Q 010740          180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV----YTYSTLIKACVDAMRFELIETLYQDMDER----S-VTPNT  250 (502)
Q Consensus       180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~  250 (502)
                      ..+..+...+...|++++|+..|+++.+..  +.+.    ..+..+...+...|++++|...+++..+.    + .....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            334455566677777777777777766542  2232    35666666667777777777776665542    1 11123


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCC
Q 010740          251 VTQNIVLGGYGKAGMFDQMERVLSGMLESAT----CKPDVWTMNTILSVFANKGQ----------VDMMERWYEKFRNFG  316 (502)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~  316 (502)
                      .++..+...|...|++++|...+++.++...    ......++..+...|...|+          +++|...        
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------  198 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------  198 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------
Confidence            4455555566666666666666665543210    00112234444444444444          0000000        


Q ss_pred             CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC
Q 010740          317 IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----QF-PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD  390 (502)
Q Consensus       317 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~  390 (502)
                                          +++|.+.+.+..+.    +. ......+..+...+...|++++|...+++..+... ..+
T Consensus       199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence                                44444444443221    00 01223556666666777777777777766654210 011


Q ss_pred             ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----C
Q 010740          391 ----TKTFCCLINGYANAGLFHKVISSVRLASKLQIA-----ENVSFYNAVISACIKADDLMEMERVYKRMKEKH----C  457 (502)
Q Consensus       391 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~  457 (502)
                          ..++..+...|...|++++|...++.+.+....     ....++..+...|...|++++|...+++..+..    .
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence                225667777788888888888888766554110     124567778888888888888888888776531    1


Q ss_pred             C-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          458 R-PDSETFSIMTEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       458 ~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      . ....++..+...|.+.|++++|.+.++++++..
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            1 113467778888888999999999999888874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.60  E-value=2.4e-12  Score=116.40  Aligned_cols=224  Identities=10%  Similarity=0.063  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010740          267 DQMERVLSGMLESATCKPDVWTMNTILSVFA-------NKGQV-------DMMERWYEKFRNFGIDPETRTFNILIGAYG  332 (502)
Q Consensus       267 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  332 (502)
                      ++|..+|++.++..  +.+...|..++..+.       +.|++       ++|..+|++..+.-.+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45555666655432  234445555554443       23554       666666666665211334456666666666


Q ss_pred             ccCcHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHH
Q 010740          333 KKRMYDKMSSVMEYMRKLQFPWTSS-TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA-NAGLFHKV  410 (502)
Q Consensus       333 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a  410 (502)
                      +.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            667777777777766664332 333 66666666666777777777777766543 223333333222221 25777777


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH-CRP--DSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      ..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++..... +.|  ....|..++..+.+.|+.++|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777766652 4456667777777777777777777777777652 233  3556777777777777777777777777


Q ss_pred             HHhhhhcc
Q 010740          488 LQMLLEAS  495 (502)
Q Consensus       488 ~~~~~~~~  495 (502)
                      .+..|++.
T Consensus       268 ~~~~p~~~  275 (308)
T 2ond_A          268 FTAFREEY  275 (308)
T ss_dssp             HHHTTTTT
T ss_pred             HHHccccc
Confidence            77766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=4.3e-13  Score=111.38  Aligned_cols=172  Identities=10%  Similarity=0.057  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          320 ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLIN  399 (502)
Q Consensus       320 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~  399 (502)
                      +..+|..+...|.+.|++++|.+.|++..+..+. +...+..+..++...|++++|...+....... .-+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4556677777777777777777777777766554 66777777777777777777777777776653 234556666777


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740          400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK  479 (502)
Q Consensus       400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~  479 (502)
                      .+...++++.+...+..+.... +.+...+..+..+|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence            7777888888888887777654 55677777888888888888888888888877643 267778888888888888888


Q ss_pred             HHHHHHHHHHhhhhcc
Q 010740          480 VYALEQEKLQMLLEAS  495 (502)
Q Consensus       480 A~~~~~~~~~~~~~~~  495 (502)
                      |++.|+++++..|.+.
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            8888888888877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=5.7e-14  Score=132.98  Aligned_cols=279  Identities=11%  Similarity=-0.016  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKE----GTYMKLLVLLGKSGQPELARKVFNEMVEE----G-IEPTP  179 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~  179 (502)
                      ..+......+...|++++|+..|+.+.+..  +.+.    ..|..+...+...|++++|...|++..+.    + .+...
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            334445566778899999999999988763  3333    47888999999999999999999987654    1 12234


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 010740          180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLP----NCQPDVYTYSTLIKACVDAMR-----------------FELIETLY  238 (502)
Q Consensus       180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~  238 (502)
                      .++..+...|...|++++|+..+++..+..    ..+....++..+...+...|+                 +++|.+.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            677888889999999999999988865421    012234467777788888888                 77777777


Q ss_pred             HHHHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 010740          239 QDMDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWY  309 (502)
Q Consensus       239 ~~~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~  309 (502)
                      ++..+.    +. .....++..+...|...|++++|.+.+++.++...-..+    ...+..+...|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            665432    11 112235556666666667777776666665432110111    124455555555555555555555


Q ss_pred             HHHHhCCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 010740          310 EKFRNFGID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG--  386 (502)
Q Consensus       310 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--  386 (502)
                      ++....... .+.                               .....++..+...+...|++++|...+++..+..  
T Consensus       287 ~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          287 KRTLALAVELGER-------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            554431100 000                               0012334444455555555555555555443321  


Q ss_pred             --C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          387 --M-KADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       387 --~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                        . .....++..+...|...|++++|.+.++...+.
T Consensus       336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence              0 001234555566666666666666666665554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.58  E-value=4.9e-11  Score=117.77  Aligned_cols=381  Identities=10%  Similarity=0.055  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCCHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ---PELARKVFNEMVEEG-IEPTPELYTA  184 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~  184 (502)
                      +.....+..+...+.++.+..+|+.+...  ++.+...|...+..-.+.|+   ++.+.++|++.+... .+|+...|..
T Consensus        67 ~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~  144 (679)
T 4e6h_A           67 FLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS  144 (679)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            44555666666778899999999988876  57777888888888888888   999999999888763 1378888887


Q ss_pred             HHHHHHhCCCH--------HHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCC
Q 010740          185 LLAAYCRNSLI--------DEAFVTLNQMKTLPNC-QP-DVYTYSTLIKACV---------DAMRFELIETLYQDMDERS  245 (502)
Q Consensus       185 l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g  245 (502)
                      .+....+.++.        +...++|+.....-|. .+ +...|...+....         ..++++.+.++|+.++...
T Consensus       145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP  224 (679)
T 4e6h_A          145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP  224 (679)
T ss_dssp             HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence            77666554443        3344677765543344 33 4567777766543         2334566777777766431


Q ss_pred             CCCCHHHHHH----------------------------------------------------------------------
Q 010740          246 VTPNTVTQNI----------------------------------------------------------------------  255 (502)
Q Consensus       246 ~~~~~~~~~~----------------------------------------------------------------------  255 (502)
                      ...-..+|..                                                                      
T Consensus       225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l  304 (679)
T 4e6h_A          225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI  304 (679)
T ss_dssp             CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence            1111122211                                                                      


Q ss_pred             ---HHHHHhccC-------ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHH
Q 010740          256 ---VLGGYGKAG-------MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME-RWYEKFRNFGIDPETRTF  324 (502)
Q Consensus       256 ---l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~  324 (502)
                         .+..--..+       ..+.+..+|++.+...  .-....|...+..+...|+.++|. ++|++.... .+.+...+
T Consensus       305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw  381 (679)
T 4e6h_A          305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA  381 (679)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred             HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence               111100000       0111223344443321  223444555555566678888886 999888763 35566667


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHcCC---------CCC------------hHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740          325 NILIGAYGKKRMYDKMSSVMEYMRKLQF---------PWT------------SSTYNNVIEAFSDMGDAKHMEYTFEQMH  383 (502)
Q Consensus       325 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~  383 (502)
                      ..++...-+.|+++.|.++|+.+.+...         .|+            ..+|...+....+.|..+.|..+|.+..
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7788888889999999999998876410         121            2367777888888899999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--C
Q 010740          384 AEGMKADTKTFCCLINGYANA-GLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--D  460 (502)
Q Consensus       384 ~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~  460 (502)
                      +.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+  .
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~  540 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL  540 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            751112233443333333343 4589999999988886 56677778888888888999999999999998864322  3


Q ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          461 SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      ...|...+..-.+.|+.+.+.++.+++.+..|++.
T Consensus       541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            45788888888899999999999999999887643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.58  E-value=1.2e-13  Score=126.52  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIA-E----NVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSE  462 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~  462 (502)
                      ++..+...+...|++++|...++...+.... .    ...++..+...+...|++++|...+++..+.    +-.+ ...
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4555556666666666666666555432100 0    1445666777777777777777777766543    1100 134


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          463 TFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ++..+...|.+.|++++|.+.++++++...
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            666777788888888888888888877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.58  E-value=1.1e-13  Score=126.84  Aligned_cols=274  Identities=11%  Similarity=0.000  Sum_probs=152.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK----EGTYMKLLVLLGKSGQPELARKVFNEMVEE----GIE-PTPELYTA  184 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~  184 (502)
                      ....+...|++++|+..|+.+.+..  +.+    ...+..+...+...|++++|...+++..+.    +.. ....++..
T Consensus        11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3455667889999999998887753  233    356778888888888888888888876543    111 12456777


Q ss_pred             HHHHHHhCCCHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 010740          185 LLAAYCRNSLIDEAFVTLNQMKTLPNCQPD----VYTYSTLIKACVDAMR--------------------FELIETLYQD  240 (502)
Q Consensus       185 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~  240 (502)
                      +...+...|++++|.+.+++..+...-..+    ..++..+...+...|+                    +++|.+.+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            778888888888888888776542110122    3356667777777777                    6777766666


Q ss_pred             HHhC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010740          241 MDER----SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEK  311 (502)
Q Consensus       241 ~~~~----g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~  311 (502)
                      ....    +. .....++..+...+...|++++|.+.+++.++...-.++    ...+..+...+...|++++|...+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4431    10 111234555555566666666666666555432100011    12344444555555555555555544


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC----
Q 010740          312 FRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG----  386 (502)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----  386 (502)
                      ......                               ..+.. ....++..+...+...|++++|...+++..+..    
T Consensus       249 al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          249 TLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             HHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence            432100                               00000 002344445555555555555555555544321    


Q ss_pred             CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          387 MK-ADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       387 ~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      -. ....++..+...|...|++++|...++++.+.
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            00 01234555666666666666666666666553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.57  E-value=3.2e-13  Score=126.46  Aligned_cols=234  Identities=8%  Similarity=-0.073  Sum_probs=165.0

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCCHHHHH
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEKFRNFG--I----DPETRTFN  325 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~~~  325 (502)
                      ....+...|++++|.+.+++.++...-.++    ..++..+...|...|++++|...+++..+.-  .    +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            445566778888888888777543111122    3567777778888888888888887776521  1    11234677


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHHHHH
Q 010740          326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GM-KADTKTFC  395 (502)
Q Consensus       326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~  395 (502)
                      .+..+|...|++++|...+.+..+..... +    ..++..+..+|...|++++|...+++..+.    +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            77888888888888888888776542111 1    246778888889999999999998888762    22 22356788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010740          396 CLINGYANAGLFHKVISSVRLASKL----QIAENVSFYNAVISACIKADD---LMEMERVYKRMKEKHCRPD-SETFSIM  467 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~p~-~~~~~~l  467 (502)
                      .+...|...|++++|...+++..+.    +-+.....+..+...+...|+   +++|+.++++.   +..|+ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            8889999999999999999877654    112223335678888888898   77777777665   22232 4467788


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          468 TEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       468 ~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ...|...|++++|.+.++++++...
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=9.4e-13  Score=123.30  Aligned_cols=165  Identities=10%  Similarity=0.046  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CC-CCChH
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFG----I-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----QF-PWTSS  357 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~  357 (502)
                      +++.+..+|...|++++|+..|++..+..    . .....++..+..+|...|++++|.+.+++..+.    +. +....
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            34444555555555555555555444310    0 001124555555566666666666666555441    11 22344


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEG----MKADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYN  430 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~  430 (502)
                      ++..+...+...|++++|...+++..+..    -......+..+...+...|+   +++|+.+++....  .+.....+.
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~  343 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence            55666666666666666666666554321    01111234556666666676   5555555554311  122234566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          431 AVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .+...|...|++++|.+.|++..+
T Consensus       344 ~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          344 DVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            677777778888888877777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.55  E-value=2e-13  Score=130.34  Aligned_cols=312  Identities=13%  Similarity=0.049  Sum_probs=214.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          148 MKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI---DEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       148 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      ..+...+.+.|++++|.++|++..+.|   +...+..+...|...|+.   ++|+++|++..+.     +...+..|...
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~   78 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRL   78 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHH
Confidence            346777888999999999999998876   334455666677778888   9999999998752     55566667775


Q ss_pred             HHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010740          225 CVDAM-----RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMF---DQMERVLSGMLESATCKPDVWTMNTILSVF  296 (502)
Q Consensus       225 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (502)
                      +...+     ++++|...|++..+.|...   .+..|...|...+..   .++.+.+....+.    .+...+..+...|
T Consensus        79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y  151 (452)
T 3e4b_A           79 LAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLY  151 (452)
T ss_dssp             HHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHH
T ss_pred             HHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence            55555     7899999999999876542   566677777665543   3455555555433    2345667777888


Q ss_pred             HhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740          297 ANKGQVDM----MERWYEKFRNFGIDPETRTFNILIGAYGKKR---MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM  369 (502)
Q Consensus       297 ~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  369 (502)
                      ...+.+++    +..+++....    .+...+..|...|...|   +.++|.+.|....+.+.. +...+..+...|...
T Consensus       152 ~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g  226 (452)
T 3e4b_A          152 RTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDA  226 (452)
T ss_dssp             HHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCG
T ss_pred             HcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCC
Confidence            88775544    4444444432    23337888888999999   999999999999998865 666667777777655


Q ss_pred             ----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC--
Q 010740          370 ----GDAKHMEYTFEQMHAEGMKADTKTFCCLING-Y--ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKAD--  440 (502)
Q Consensus       370 ----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--  440 (502)
                          +++++|.+.|++.. .|   +...+..|... +  ...+++++|.++|++..+.|   +...+..|...|. .|  
T Consensus       227 ~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g  298 (452)
T 3e4b_A          227 TLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW  298 (452)
T ss_dssp             GGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred             CCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence                79999999999988 43   45566667766 4  46899999999999999876   6677778888887 55  


Q ss_pred             ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhh
Q 010740          441 ---DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDKVYALEQEKLQML  491 (502)
Q Consensus       441 ---~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  491 (502)
                         ++++|.++|++.. .|   +...+..|...|..    ..+.++|+++|+++.+.+
T Consensus       299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence               9999999999988 43   77888888888876    348999999999998864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.55  E-value=4.5e-13  Score=128.73  Aligned_cols=213  Identities=8%  Similarity=-0.068  Sum_probs=119.1

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010740          123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP-ELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVT  201 (502)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  201 (502)
                      .++++++.++......  +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|++.
T Consensus        83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3555556665555432  34555666666666666666 66666666666553 33456666666666666666666666


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------C
Q 010740          202 LNQMKTLPNCQPDVYTYSTLIKACVDA---------MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA--------G  264 (502)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------g  264 (502)
                      |++..+.   .|+...+..+..++...         |++++|++.|++..+.... +...|..+..+|...        |
T Consensus       160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence            6666653   34555566666666666         6666666666665554322 455555555555555        5


Q ss_pred             ChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 010740          265 MFDQMERVLSGMLESAT-CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSV  343 (502)
Q Consensus       265 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  343 (502)
                      ++++|++.|++.++... ...+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666655554310 00245555555555555555555555555555433 33344455555555555555555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=4.3e-12  Score=105.29  Aligned_cols=167  Identities=15%  Similarity=0.068  Sum_probs=112.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE  364 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  364 (502)
                      +...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            44556666666666666666666666666543 445566666666666677777777766666665444 5566666666


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740          365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME  444 (502)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  444 (502)
                      .+...++++.+...+.+..+.. +-+...+..+...+...|++++|++.++++.+.. +.+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            6667777777777777766543 2345666677777777777777777777777654 4566677777777777777777


Q ss_pred             HHHHHHHHHHC
Q 010740          445 MERVYKRMKEK  455 (502)
Q Consensus       445 a~~~~~~~~~~  455 (502)
                      |++.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            77777777764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.52  E-value=1.2e-11  Score=111.87  Aligned_cols=220  Identities=8%  Similarity=0.001  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          125 FQALQVFEMLKEQPFYQPKEGTYMKLLVLLGK-------SGQP-------ELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       125 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      ++|+.+|+.+....  +.+...|..++..+..       .|++       ++|..+|++.++.-.+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            68888888887753  5677788888877753       4775       788888888887311445667888888888


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVY-TYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG-KAGMFDQ  268 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~g~~~~  268 (502)
                      ..|++++|.++|+++.+..  +.+.. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888887642  22333 677778888888888888888888777543 24444544333322 2577777


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCcHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDP--ETRTFNILIGAYGKKRMYDKMSSVME  345 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~  345 (502)
                      |.++|+..++..  +.+...|..++..+.+.|++++|..+|++..... ++|  ....|..++..+.+.|+.+.|..+++
T Consensus       188 A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          188 AFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777776542  2355666667777777777777777777776642 233  34556666666666677777777766


Q ss_pred             HHHHcC
Q 010740          346 YMRKLQ  351 (502)
Q Consensus       346 ~~~~~~  351 (502)
                      ++.+..
T Consensus       266 ~a~~~~  271 (308)
T 2ond_A          266 RRFTAF  271 (308)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            666553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=1.4e-13  Score=124.87  Aligned_cols=249  Identities=14%  Similarity=0.154  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC
Q 010740          215 VYTYSTLIKACVDAMRFELIETLYQDMDER-------SVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES------AT  281 (502)
Q Consensus       215 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~  281 (502)
                      ..++..+...+...|++++|..+++++.+.       .......++..+...|...|++++|.+.+++.++.      ..
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            344555555555555555555555555441       11223344555555555666666666655555432      11


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----
Q 010740          282 CKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GI-DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL----  350 (502)
Q Consensus       282 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  350 (502)
                      .......+..+...+...|++++|...++++.+.      +. +.....+..+...|...|++++|.++++.+.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1112344555555566666666666666555432      11 112334555555555666666666665555443    


Q ss_pred             --CCC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          351 --QFP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG-------MKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       351 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                        +.. ....++..+...+...|++++|.+.++++.+..       ..+......                         
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------------------------  241 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW-------------------------  241 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH-------------------------
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH-------------------------
Confidence              101 122345555555555566666665555554320       000000000                         


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                         .....+..+...+...+.+.++...++...... ..+..++..+..+|.+.|++++|.+.++++++..+
T Consensus       242 ---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          242 ---MHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ---HHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence               011222333334445556666666666665431 12455677777788888888888888888777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=1.1e-12  Score=126.03  Aligned_cols=214  Identities=8%  Similarity=-0.063  Sum_probs=173.2

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010740          159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI-DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL  237 (502)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  237 (502)
                      .++++...++...... +.+...+..+..++...|++ ++|++.|++..+..  +.+...|..+..+|...|++++|.+.
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3677777888776553 45788899999999999999 99999999988753  56688899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--------C
Q 010740          238 YQDMDERSVTPNTVTQNIVLGGYGKA---------GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK--------G  300 (502)
Q Consensus       238 ~~~~~~~g~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g  300 (502)
                      |++..+..  |+...+..+...|...         |++++|++.|++.++..  +.+...|..+..+|...        |
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence            99988864  5678888888899988         99999999999987753  34577888888888888        8


Q ss_pred             CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHH
Q 010740          301 QVDMMERWYEKFRNFGID---PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEY  377 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  377 (502)
                      ++++|+..|++..+.. +   .+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+
T Consensus       236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888753 3   46778888888888888888888888888877654 66777788888888888887776


Q ss_pred             HHHH
Q 010740          378 TFEQ  381 (502)
Q Consensus       378 ~~~~  381 (502)
                      .+.+
T Consensus       314 ~~~~  317 (474)
T 4abn_A          314 SKGK  317 (474)
T ss_dssp             HTTT
T ss_pred             Hhcc
Confidence            5544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=9.6e-14  Score=125.88  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC------CC
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEE-------GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL------PN  210 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~  210 (502)
                      ..++..+...+...|++++|..+|+++.+.       ..+....++..+...|...|++++|+..+++..+.      ..
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            345666666666666666666666666552       11223455666666666666666666666665432      11


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----
Q 010740          211 CQPDVYTYSTLIKACVDAMRFELIETLYQDMDER------SV-TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES----  279 (502)
Q Consensus       211 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  279 (502)
                      .+....++..+...+...|++++|...++++.+.      +. +.....+..+...+...|++++|.+.++++++.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1223445666666666777777777766666543      11 123345666666777777777777777766543    


Q ss_pred             --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          280 --ATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       280 --~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                        .........+..+..++...|++++|...++++.+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              10111234566666777777777777777766654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=2.9e-11  Score=112.73  Aligned_cols=302  Identities=9%  Similarity=-0.048  Sum_probs=189.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHH
Q 010740          182 YTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV----YTYSTLIKACVDAMRFELIETLYQDMDERSV-TPN----TVT  252 (502)
Q Consensus       182 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~  252 (502)
                      +......+...|++++|...+++...... ..+.    ..++.+...+...|++++|...+++...... ..+    ..+
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34455667778999999999888776421 1222    2456667778888999999888888765311 112    123


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHcC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHH
Q 010740          253 QNIVLGGYGKAGMFDQMERVLSGMLESA---TCK--P-DVWTMNTILSVFANKGQVDMMERWYEKFRNFGID----PETR  322 (502)
Q Consensus       253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~  322 (502)
                      +..+...+...|++++|...+++.++..   +..  | ....+..+...+...|++++|...+++.......    ....
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            5567777888889998888888876532   111  2 2345566777888888888888888887753221    1234


Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-hHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHH
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT-SSTYN-----NVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKT  393 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~  393 (502)
                      ++..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.......+   ....
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            566777778888888888888887765422211 11121     22334667888888888887776543211   1234


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKL----QIAENV-SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~  468 (502)
                      +..+...+...|++++|...++.....    +..++. .++..+..++...|+.++|...+++.....-      -...+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~------~~g~~  329 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN------RTGFI  329 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HHCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc------cccHH
Confidence            566677778888888888888766543    211122 2555667777788888888888887765310      01122


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          469 EAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       469 ~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ..+...|  +....++++..+..+
T Consensus       330 ~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          330 SHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHcc--HHHHHHHHHHHhCCC
Confidence            3444555  566667776666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.49  E-value=1.2e-11  Score=115.49  Aligned_cols=232  Identities=9%  Similarity=0.028  Sum_probs=166.4

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C---C-CCHHHHH
Q 010740          256 VLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTILSVFANKGQVDMMERWYEKFRNFG--I---D-PETRTFN  325 (502)
Q Consensus       256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~~~~  325 (502)
                      ....+...|++++|...|++.++...-.++    ...+..+...|...|++++|...+++..+..  .   . ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            344566788888888888887643221233    3467778888888888888888888776521  1   1 1245677


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcC----CC-CChHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----cCCCCCHHHHH
Q 010740          326 ILIGAYGKKRMYDKMSSVMEYMRKLQ----FP-WTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA-----EGMKADTKTFC  395 (502)
Q Consensus       326 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~  395 (502)
                      .+..+|...|++++|.+.+.+..+..    .. ....++..+..+|...|++++|...|++..+     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            78888888899999988888776531    11 1234677888889999999999999988876     32 22366788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQI----AENVSFYNAVISACIKADD---LMEMERVYKRMKEKHCRPD-SETFSIM  467 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~p~-~~~~~~l  467 (502)
                      .+...+...|++++|...++...+...    +.....+..+...+...|+   +.+|+.++++.   +..|+ ...+..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  342 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence            899999999999999999998877521    2223445666667777788   77777777663   22222 3466788


Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          468 TEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       468 ~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ...|...|++++|.+.++++.+..
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999998864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=1.5e-11  Score=101.80  Aligned_cols=170  Identities=11%  Similarity=0.017  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          323 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       323 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                      .+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3444555556666666666666655544332 55666666666777777777777777766542 335566777777777


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 010740          403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      ..|++++|.+.++.+.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7888888888887777653 4567778888888888888888888888888764 2367788888888999999999999


Q ss_pred             HHHHHHHhhhhccc
Q 010740          483 LEQEKLQMLLEASG  496 (502)
Q Consensus       483 ~~~~~~~~~~~~~~  496 (502)
                      .++++.+..+....
T Consensus       166 ~~~~~~~~~~~~~~  179 (186)
T 3as5_A          166 HFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHCCCG
T ss_pred             HHHHHHHcCCCchh
Confidence            99998888766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.45  E-value=3e-11  Score=112.79  Aligned_cols=228  Identities=9%  Similarity=0.005  Sum_probs=128.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-----CHHHHHHHH
Q 010740          224 ACVDAMRFELIETLYQDMDERSV-TP----NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKP-----DVWTMNTIL  293 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~  293 (502)
                      .+...|++++|...|++..+... .+    ...++..+...|...|+++.|...+++.++...-.+     ...+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34455566666666555543210 01    123455555566666666666666655543211111     133455566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 010740          294 SVFANKGQVDMMERWYEKFRNF----GID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRK-----LQFPWTSSTYNNVI  363 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  363 (502)
                      .+|...|++++|.+.|++..+.    +.. ....++..+..+|...|++++|.+.+.+..+     .... ...++..+.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la  268 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS  268 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence            6666666666666666655542    101 1123556666667777777777777776655     3222 355666777


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          364 EAFSDMGDAKHMEYTFEQMHAEGM---KAD-TKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                      ..+.+.|++++|...+++..+...   .+. ...+..+...+...++   +++|+..++...  ..+.....+..+...|
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHH
Confidence            777777777777777777665321   111 2344555555666666   566666555421  1122234566778888


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 010740          437 IKADDLMEMERVYKRMKE  454 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~~  454 (502)
                      ...|++++|.+.|++..+
T Consensus       347 ~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            888888888888887764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.44  E-value=1.4e-09  Score=107.54  Aligned_cols=360  Identities=10%  Similarity=0.015  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHH
Q 010740          126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL---IDEAFVTL  202 (502)
Q Consensus       126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~  202 (502)
                      +.+..|+......  +-|...|..++..+.+.+.++.+..+|++++.. ++.....|...+..-.+.|.   ++.+.++|
T Consensus        50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            3344444444443  678999999999999999999999999999987 47788899999999889998   99999999


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHhc---------
Q 010740          203 NQMKTLPNCQPDVYTYSTLIKACVDAMRF--------ELIETLYQDMDE-RSV-TPN-TVTQNIVLGGYGK---------  262 (502)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~l~~~~~~---------  262 (502)
                      ++.......+|++..|...+....+.++.        +.+.++|+.... .|. .++ ...|...+.....         
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            99987421138999999888877666553        334577777554 465 444 5688877765432         


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHH----------HhcCCHHHHHHHHHH------------------
Q 010740          263 AGMFDQMERVLSGMLESATCKPDVWTMN---TILSVF----------ANKGQVDMMERWYEK------------------  311 (502)
Q Consensus       263 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~----------~~~g~~~~a~~~~~~------------------  311 (502)
                      .++++.+..+|+..+.. +...-..+|.   .+...+          -...+++.|...+.+                  
T Consensus       207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~  285 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ  285 (679)
T ss_dssp             HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred             HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence            33567788888887642 1111112221   111110          000112223333322                  


Q ss_pred             -------------------------------------------------HHhCCCCCCHHHHHHHHHHHHccCcHHHHH-
Q 010740          312 -------------------------------------------------FRNFGIDPETRTFNILIGAYGKKRMYDKMS-  341 (502)
Q Consensus       312 -------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-  341 (502)
                                                                       ++.. .+-....|...+..+...|+.++|. 
T Consensus       286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r  364 (679)
T 4e6h_A          286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT  364 (679)
T ss_dssp             CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred             chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence                                                             2221 1122223333333334445555664 


Q ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 010740          342 SVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---------MKAD------------TKTFCCLING  400 (502)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~l~~~  400 (502)
                      ++|+...... +.+...|-..+....+.|+++.|.++|+.+....         -.|+            ...|...+..
T Consensus       365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~  443 (679)
T 4e6h_A          365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT  443 (679)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence            6666666532 2355555666666666677777777776665421         0121            2245555565


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740          401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK  479 (502)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~  479 (502)
                      ..+.|+.+.|..+|..+.+........+|...+..-.+. ++.+.|.++|+...+. +.-+...|...+......|+.+.
T Consensus       444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~  522 (679)
T 4e6h_A          444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ  522 (679)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence            566666777777776666541111223333222222233 3466777777766665 33355566666666666677777


Q ss_pred             HHHHHHHHHHhhh
Q 010740          480 VYALEQEKLQMLL  492 (502)
Q Consensus       480 A~~~~~~~~~~~~  492 (502)
                      |..+|++++...+
T Consensus       523 AR~lferal~~~~  535 (679)
T 4e6h_A          523 VKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHHHTTTSS
T ss_pred             HHHHHHHHHHhcC
Confidence            7777777666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=1.1e-11  Score=123.80  Aligned_cols=169  Identities=5%  Similarity=0.015  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING  400 (502)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  400 (502)
                      ...++.|...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.. +-+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            455666666666666666666666666665444 56666666777777777777777777666642 1235566777777


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 010740          401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKV  480 (502)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A  480 (502)
                      |...|++++|++.|+++.+.. +.+...|+.+..+|.+.|++++|++.|++..+.... +...|..+..+|...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            777777777777777776654 445667777777777777777777777777765322 466777777777777777777


Q ss_pred             HHHHHHHHHhhhh
Q 010740          481 YALEQEKLQMLLE  493 (502)
Q Consensus       481 ~~~~~~~~~~~~~  493 (502)
                      .+.++++++..++
T Consensus       165 ~~~~~kal~l~~~  177 (723)
T 4gyw_A          165 DERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChh
Confidence            7777777776544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.41  E-value=2.3e-10  Score=106.57  Aligned_cols=271  Identities=11%  Similarity=0.026  Sum_probs=127.5

Q ss_pred             HHHhhhcHHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQPFYQPKEG----TYMKLLVLLGKSGQPELARKVFNEMVEEGI-EPTP----ELYTALLA  187 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~  187 (502)
                      .+...|++++|+..++....... ..+..    +++.+...+...|++++|...+++.....- ..+.    .++..+..
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34456777777777776655421 11111    345555666666777777766666554210 0111    22344555


Q ss_pred             HHHhCCCHHHHHHHHHHhhcCC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLP---NCQ--P-DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG  261 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~  261 (502)
                      .+...|++++|...+++..+..   +..  | ....+..+...+...|++++|...+++.........            
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------  169 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ------------  169 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC------------
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC------------
Confidence            5556666666666665544310   000  1 122334444455555555555555555443211100            


Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHccC
Q 010740          262 KAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE--TRTFN----ILIGAYGKKR  335 (502)
Q Consensus       262 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g  335 (502)
                                          .......+..+...+...|++++|...+++.......++  .....    ..+..+...|
T Consensus       170 --------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  229 (373)
T 1hz4_A          170 --------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG  229 (373)
T ss_dssp             --------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             --------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence                                000122333444444444455544444444432110100  01110    1122244455


Q ss_pred             cHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCh
Q 010740          336 MYDKMSSVMEYMRKLQFPW---TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMKADT-KTFCCLINGYANAGLF  407 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~  407 (502)
                      ++++|...+..........   ....+..+...+...|++++|...+++....    |..++. ..+..+..++...|+.
T Consensus       230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  309 (373)
T 1hz4_A          230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK  309 (373)
T ss_dssp             CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence            5555555555444322111   0123445556666667777776666665432    111122 2455566777788888


Q ss_pred             HHHHHHHHHHHhc
Q 010740          408 HKVISSVRLASKL  420 (502)
Q Consensus       408 ~~a~~~~~~~~~~  420 (502)
                      ++|...++.....
T Consensus       310 ~~A~~~l~~al~~  322 (373)
T 1hz4_A          310 SDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887776553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=6.8e-11  Score=97.85  Aligned_cols=156  Identities=12%  Similarity=0.059  Sum_probs=76.1

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ...+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~   91 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK   91 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence            334444555555555555554432  3344455555555555555555555555555442 3344455555555555555


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLS  274 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  274 (502)
                      +++|.+.++++.+.  .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus        92 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           92 YDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555554442  13344444444455555555555555555544432 1133444444444444444444444444


Q ss_pred             HH
Q 010740          275 GM  276 (502)
Q Consensus       275 ~~  276 (502)
                      +.
T Consensus       169 ~~  170 (186)
T 3as5_A          169 KA  170 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=4.7e-11  Score=119.35  Aligned_cols=164  Identities=13%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 010740          286 VWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEA  365 (502)
Q Consensus       286 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  365 (502)
                      ..+++.+..+|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+.... +...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3445555555555555555555555555432 333455555555555555555555555555555433 45555555666


Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740          366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM  445 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  445 (502)
                      +...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|+++.+.. +.+...|..+..++...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence            666666666666666555542 1234455666666666666666666666665543 33455566666666666666666


Q ss_pred             HHHHHHHH
Q 010740          446 ERVYKRMK  453 (502)
Q Consensus       446 ~~~~~~~~  453 (502)
                      .+.++++.
T Consensus       165 ~~~~~kal  172 (723)
T 4gyw_A          165 DERMKKLV  172 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.36  E-value=8.2e-11  Score=101.26  Aligned_cols=202  Identities=9%  Similarity=0.063  Sum_probs=160.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 010740          284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI  363 (502)
Q Consensus       284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  363 (502)
                      .+...+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.++...+.... +...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4668888899999999999999999999998763377788888999999999999999999999987665 778899999


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChHHHHHHHH
Q 010740          364 EAFSDMGDAKHMEYTFEQMHAEGMKADT-------KTFCCLINGYANAGLFHKVISSVRLASKLQIAE--NVSFYNAVIS  434 (502)
Q Consensus       364 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  434 (502)
                      .++...|++++|...|++..+.. +.+.       ..|..+...+...|++++|++.++.+.+.. +.  +...|..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999998863 2234       457788888899999999999999998863 33  4677788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          435 ACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      +|...|     ..+++++...+. .+...|....  ....+.+++|+..++++++..|++..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            876544     444566665532 2444554433  34567789999999999999887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=1.6e-11  Score=109.29  Aligned_cols=230  Identities=15%  Similarity=0.124  Sum_probs=161.0

Q ss_pred             HhccCChHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 010740          260 YGKAGMFDQMERVLSGMLESA------TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF------GI-DPETRTFNI  326 (502)
Q Consensus       260 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~  326 (502)
                      ....|++++|+..+++.++..      .......++..+...|...|++++|...++++.+.      +- +....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            345678888888887775421      11224567888999999999999999999998764      21 234567889


Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHcC-------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc------CCCC-CHH
Q 010740          327 LIGAYGKKRMYDKMSSVMEYMRKLQ-------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE------GMKA-DTK  392 (502)
Q Consensus       327 l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~  392 (502)
                      +...|...|++++|.+.+.++.+..       .+.....+..+...+...|++++|...++++.+.      +-.| ...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999999887651       1224677888999999999999999999998865      1122 245


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCC-ChHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCC
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKL-------QIAE-NVSFYNAVISACIKADDLM------EMERVYKRMKEKHCR  458 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~g~~  458 (502)
                      ++..+...|...|++++|..+++.+.+.       ...+ ....|..+...+...+...      .+...++..... ..
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  249 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP  249 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence            7888999999999999999999988764       1122 2333444444444333322      222222222111 11


Q ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          459 PDSETFSIMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      ....++..+...|...|++++|.++++++++.
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            13457888999999999999999999998864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=3.9e-10  Score=96.97  Aligned_cols=206  Identities=11%  Similarity=0.013  Sum_probs=160.6

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010740          248 PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNIL  327 (502)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  327 (502)
                      .|...+......+...|++++|.+.|++.++... .++...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            3668888999999999999999999999987632 2677888889999999999999999999999865 5567889999


Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHH
Q 010740          328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTS-------STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---TKTFCCL  397 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l  397 (502)
                      ..+|...|++++|...+++..+.... +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            99999999999999999999987654 55       55888888999999999999999999875  565   4577777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740          398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM  467 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l  467 (502)
                      ..+|...|     ..+++.+...+ ..+...|....  ....+.+++|+..|++..+.... +..+...+
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l  220 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            77776544     44455555553 33444454443  34557789999999999986422 34444433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=2.4e-11  Score=108.18  Aligned_cols=132  Identities=8%  Similarity=0.036  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CC
Q 010740          322 RTFNILIGAYGKKRMYDKMSSVMEYMRKL------Q-FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE-------GM  387 (502)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~  387 (502)
                      .++..+...|...|++++|...++++.+.      . .+....++..+...+...|++++|..++++..+.       ..
T Consensus       128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  207 (283)
T 3edt_B          128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV  207 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34445555555555555555555554443      0 1112344555556666666666666666655542       01


Q ss_pred             CCC-HHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          388 KAD-TKTFCCLINGYANAGLFH------KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       388 ~p~-~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .+. ...+..+...+...+...      .+...++.... ..+....++..+..+|...|++++|..+|++..+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             CSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            111 112222222222222222      22221111111 1122345677788888888888888888888765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=1.3e-09  Score=84.72  Aligned_cols=133  Identities=19%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACI  437 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  437 (502)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.... +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45666777777788888888887777653 2356667777777888888888888888777764 455667778888888


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          438 KADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       438 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ..|++++|.++++++.+... .+...+..+...+.+.|++++|.+.++++++..|.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            88888888888888877632 35777888888888888888888888888876653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=3.1e-10  Score=101.59  Aligned_cols=212  Identities=9%  Similarity=0.049  Sum_probs=133.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHH
Q 010740          265 MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       265 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~  339 (502)
                      ++++|...|++.                ...|...|++++|...|++..+.    |-+++ ..+|+.+..+|.+.|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            366666666655                23456677777777777766542    21111 4567777777777777777


Q ss_pred             HHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChH
Q 010740          340 MSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDM-GDAKHMEYTFEQMHAEGMK-AD----TKTFCCLINGYANAGLFH  408 (502)
Q Consensus       340 a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~  408 (502)
                      |+..+++..+..... +    ..+++.+...|... |++++|+..|++..+.... .+    ..++..+...+...|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            777777665532110 1    34677777778775 8888888888877653110 01    345777788888888888


Q ss_pred             HHHHHHHHHHhcCCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hc
Q 010740          409 KVISSVRLASKLQIAENV------SFYNAVISACIKADDLMEMERVYKRMKEKHCRPDS------ETFSIMTEAYA--KE  474 (502)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~------~~~~~l~~~~~--~~  474 (502)
                      +|+..++.+.+.......      ..|..+..++...|++++|+..|++..+.  .|+.      ..+..++.+|.  ..
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~  253 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS  253 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence            888888887775422221      14566777788888888888888887753  2321      12344555554  45


Q ss_pred             CCcHHHHHHHHHHHHhhhhc
Q 010740          475 GMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       475 g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +++++|++.|+++....+..
T Consensus       254 ~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          254 EQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             TTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHhccCCccHHHH
Confidence            66778888877766655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.20  E-value=2e-08  Score=89.06  Aligned_cols=161  Identities=7%  Similarity=0.001  Sum_probs=78.2

Q ss_pred             CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 010740          335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAK--HMEYTFEQMHAEGMKADTKTFCCLINGYANAGL------  406 (502)
Q Consensus       335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------  406 (502)
                      +++++++++++.+.+...+ +..+|+.-.-.+.+.|.++  +++++++++.+... -|...|+.....+...+.      
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence            3445555555555544433 4445544444444445444  55555555554432 233444444444444443      


Q ss_pred             hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 010740          407 FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME-MERVYKRMKEKH--CRPDSETFSIMTEAYAKEGMNDKVYAL  483 (502)
Q Consensus       407 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~  483 (502)
                      ++++++.++.+.... +-|...|+.+...+.+.|+..+ +..+.+++.+.+  -..+...+..++.+|.+.|+.++|+++
T Consensus       202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            555555555555543 4455555555555555554322 333444443322  012455555566666666666666666


Q ss_pred             HHHHHH-hhhhccccc
Q 010740          484 EQEKLQ-MLLEASGHW  498 (502)
Q Consensus       484 ~~~~~~-~~~~~~~~~  498 (502)
                      ++++.+ ..|-..+-|
T Consensus       281 ~~~l~~~~Dpir~~yW  296 (306)
T 3dra_A          281 YDLLKSKYNPIRSNFW  296 (306)
T ss_dssp             HHHHHHTTCGGGHHHH
T ss_pred             HHHHHhccChHHHHHH
Confidence            666554 344444433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.18  E-value=1.2e-08  Score=89.48  Aligned_cols=244  Identities=11%  Similarity=0.011  Sum_probs=133.8

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ++...-.|++..++.-...+..    ........-+.+++...|+++..         ..-.|....+..+...+ ..+ 
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSK----VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSC----CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred             HHHHHHhhHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence            4444556888888774333221    11223444455777777776531         11133333433333322 222 


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCChHHHHHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-TPNTVTQNIVLGGYGKAGMFDQMERVL  273 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~a~~~~  273 (502)
                         |+..|++..+.+  .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus        85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               667777766532  45555556677777777777777777777766543 225566667777777777777777777


Q ss_pred             HHHHHcCCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740          274 SGMLESATCKP-----DVWTMNTILSVFA--N--KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       274 ~~~~~~~~~~~-----~~~~~~~l~~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                      +.|.+.   .|     +..+...+..++.  .  .+++.+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.+
T Consensus       160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV  234 (310)
T ss_dssp             HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence            777543   34     2344444444422  2  23677777777776543  344333334444666667777776666


Q ss_pred             HHHHHcC---------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740          345 EYMRKLQ---------FPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       345 ~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  385 (502)
                      +.+.+..         -+-+..+...+|......|+  +|.+++.++++.
T Consensus       235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            6554421         01244455444444444554  555666665553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.18  E-value=2e-09  Score=94.60  Aligned_cols=190  Identities=11%  Similarity=0.039  Sum_probs=118.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CChHH
Q 010740          284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPE---TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP--WTSST  358 (502)
Q Consensus       284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~  358 (502)
                      .+...+..+...+.+.|++++|+..|+++.+.. +.+   ...+..+..+|.+.|++++|...|+.+.+....  .....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            356667777778888888888888888887653 333   567777778888888888888888888776432  12345


Q ss_pred             HHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHH
Q 010740          359 YNNVIEAFSD--------MGDAKHMEYTFEQMHAEGMKADT-KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFY  429 (502)
Q Consensus       359 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  429 (502)
                      +..+..++..        .|++++|...|+++.+..  |+. .....+..              +..+...    -...+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence            6666777777        788888888888877653  322 11111100              0000000    00113


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHHhhhhc
Q 010740          430 NAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTEAYAKE----------GMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       430 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~  494 (502)
                      ..+...|.+.|++++|+..|+++.+.....  ....+..+..+|...          |++++|+..++++++..|++
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            455666777777777777777776643211  234566666666655          66777777777777766554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.18  E-value=6.4e-07  Score=85.85  Aligned_cols=348  Identities=10%  Similarity=0.001  Sum_probs=226.5

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hCCC
Q 010740          122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ-PELARKVFNEMVEE-GI-EPTPELYTALLAAYC----RNSL  194 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~  194 (502)
                      |+++.+..+|+.....   .|+...|...+....+.++ .+....+|+..+.. |. ..+...|...+..+.    .+|+
T Consensus        28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            8999999999999884   5799999999988887774 46678889887764 42 347788888887654    3467


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD-------------AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYG  261 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~  261 (502)
                      .+.+..+|++....+ ...-...|......-..             .+.+..|..+++.+...-...+...|...+..-.
T Consensus       105 ~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~  183 (493)
T 2uy1_A          105 IEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM  183 (493)
T ss_dssp             HHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            889999999998742 11112233322221111             1223334444444432100013446666665433


Q ss_pred             ccC--C-----hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740          262 KAG--M-----FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK  334 (502)
Q Consensus       262 ~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  334 (502)
                      ..+  -     .+.+..+|++++...  +.+...|...+..+...|+.++|..+|++....  +.+...+..    |...
T Consensus       184 ~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~  255 (493)
T 2uy1_A          184 ENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV  255 (493)
T ss_dssp             TCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred             cCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence            221  1     345678899988753  445778888888888999999999999999986  444333322    2221


Q ss_pred             CcHHHHHHHHHHHHHcCC------------CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          335 RMYDKMSSVMEYMRKLQF------------PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYA  402 (502)
Q Consensus       335 g~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~  402 (502)
                      .+.++.   ++.+.+.-.            ......|...+....+.++.+.|..+|++. .. ...+...|......-.
T Consensus       256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~  330 (493)
T 2uy1_A          256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY  330 (493)
T ss_dssp             TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred             cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence            111111   222222100            011245677777777788899999999999 32 1234445543332222


Q ss_pred             h-cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 010740          403 N-AGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       403 ~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  481 (502)
                      . .++.+.|..+|+...+.- +.+...+...++...+.|+.+.|..+|+++.     .....|...+..-...|+.+.+.
T Consensus       331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence            2 336999999999988763 4445667778888889999999999999973     25788999998888899999999


Q ss_pred             HHHHHHHHhhh
Q 010740          482 ALEQEKLQMLL  492 (502)
Q Consensus       482 ~~~~~~~~~~~  492 (502)
                      ++++++.+...
T Consensus       405 ~v~~~~~~~~~  415 (493)
T 2uy1_A          405 ELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999987543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=1.3e-08  Score=89.30  Aligned_cols=247  Identities=9%  Similarity=0.026  Sum_probs=169.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010740          186 LAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM  265 (502)
Q Consensus       186 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  265 (502)
                      ++-..-.|.+..++.-..++...   .++ ..-..+.+++...|++...         ..-.|....+..+...+ ..+ 
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~~---~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSKV---TDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSCC---CCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred             HHHHHHhhHHHHHHHHHHhcCcc---chH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence            45566789999999855554331   222 3344456788888877642         12334444555555444 322 


Q ss_pred             hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCcHHHHHHHH
Q 010740          266 FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI-DPETRTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       266 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                         |+..|++.++..  .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+
T Consensus        85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               677788776542  45666667888999999999999999998876553 246777888899999999999999999


Q ss_pred             HHHHHcCC---CCChHHHHHHHHHHH--hcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740          345 EYMRKLQF---PWTSSTYNNVIEAFS--DMG--DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLA  417 (502)
Q Consensus       345 ~~~~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  417 (502)
                      +.|.+...   ..+..+...++.++.  ..|  ++.+|..+|+++.+.  .|+..+...++.++...|++++|.+.++.+
T Consensus       160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99987622   002455666666633  334  899999999998764  465444445555888999999999999876


Q ss_pred             HhcC---------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          418 SKLQ---------IAENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       418 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      .+.-         -+.+..++..+|......|+  +|.++++++.+..
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            6531         14567777566666666776  8889999998853

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.16  E-value=1.9e-09  Score=91.01  Aligned_cols=161  Identities=12%  Similarity=0.031  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHcC
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMK----------------LLVLLGKSGQPELARKVFNEMVEEG  174 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~  174 (502)
                      +......+...|++++|+..|+.+.+..  +.+...|..                +..++.+.|++++|...|++.++..
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            3334455667899999999998887753  333445555                5566666666666666666665553


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 010740          175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR--FELIETLYQDMDERSVTPNTVT  252 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~  252 (502)
                       +-+...+..+..++...|++++|+..|++..+..  +.+..++..+..++...|+  .+.+...++....  ..|....
T Consensus        85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a  159 (208)
T 3urz_A           85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA  159 (208)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence             3445556666666666666666666666655532  3445555555555544332  2233333333321  1222222


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHH
Q 010740          253 QNIVLGGYGKAGMFDQMERVLSGMLE  278 (502)
Q Consensus       253 ~~~l~~~~~~~g~~~~a~~~~~~~~~  278 (502)
                      +.....++...|++++|...|++.++
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            23333344445555555555555543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=3.7e-09  Score=94.58  Aligned_cols=208  Identities=11%  Similarity=-0.015  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010740          230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA---TCKP-DVWTMNTILSVFANKGQVDMM  305 (502)
Q Consensus       230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a  305 (502)
                      ++++|...|.+.               ...|...|++++|.+.|.+.++-.   +..+ ...+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477787777775               345677888898888888775431   1111 145788888889999999999


Q ss_pred             HHHHHHHHhCCC---CC--CHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhcCCHhH
Q 010740          306 ERWYEKFRNFGI---DP--ETRTFNILIGAYGKK-RMYDKMSSVMEYMRKLQFPW-T----SSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       306 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  374 (502)
                      +..|++..+...   .+  ...++..+...|... |++++|+..|++..+..... +    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            988888765311   11  135778888888886 99999999999887653211 1    3568888999999999999


Q ss_pred             HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hHHHHHHHHHHH--HcC
Q 010740          375 MEYTFEQMHAEGMKADT------KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN------VSFYNAVISACI--KAD  440 (502)
Q Consensus       375 a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~g  440 (502)
                      |+..|++..+.......      ..|..+..++...|++++|...++...+.  .|+      ...+..++.+|.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            99999999876433221      25677888899999999999999988764  232      123445566664  456


Q ss_pred             CHHHHHHHHHHHHH
Q 010740          441 DLMEMERVYKRMKE  454 (502)
Q Consensus       441 ~~~~a~~~~~~~~~  454 (502)
                      ++++|+..|+.+..
T Consensus       255 ~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          255 QLSEHCKEFDNFMR  268 (292)
T ss_dssp             THHHHHHHHTTSSC
T ss_pred             HHHHHHHHhccCCc
Confidence            78888888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.12  E-value=1.2e-08  Score=89.65  Aligned_cols=102  Identities=11%  Similarity=-0.009  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCC-CCCCHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT---PELYTALLAAYCRNSLIDEAFVTLNQMKTLPN-CQPDVYT  217 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~  217 (502)
                      .+...+..+...+.+.|++++|...|+++.+.. +.+   ...+..+..+|...|++++|+..|++..+... .+.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            345566666677777777777777777776653 223   55666667777777777777777777665321 1112344


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHhC
Q 010740          218 YSTLIKACVD--------AMRFELIETLYQDMDER  244 (502)
Q Consensus       218 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~  244 (502)
                      +..+..++..        .|++++|...|+++.+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            5556666666        66666666666666654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.12  E-value=6.3e-09  Score=87.83  Aligned_cols=135  Identities=14%  Similarity=0.029  Sum_probs=77.9

Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010740          327 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL  406 (502)
Q Consensus       327 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  406 (502)
                      +..+|.+.|++++|...|+...+..+. +...+..+..++...|++++|...|++..+.. +-+...+..+..+|...|.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            666666777777777777777666544 66667777777777777777777777776653 2245566666666654443


Q ss_pred             --hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010740          407 --FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIM  467 (502)
Q Consensus       407 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l  467 (502)
                        .+.+...++....  ..|....+.....++...|++++|+..|++..+.  .|+......+
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l  196 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL  196 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence              2333444433321  1222223334455556667777777777777763  4565444333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.12  E-value=4.9e-09  Score=81.28  Aligned_cols=127  Identities=18%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACV  226 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~  226 (502)
                      |..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|..+++++....  +.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence            3444444444455555555555444432 2334444444444444445555554444444321  233334444444444


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          227 DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       227 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      ..|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            44444444444444443321 133344444444444444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=1.1e-09  Score=110.00  Aligned_cols=173  Identities=9%  Similarity=-0.150  Sum_probs=138.2

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 010740          297 ANKGQVDMMERWYEKFR--------NFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSD  368 (502)
Q Consensus       297 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  368 (502)
                      ...|++++|++.+++..        +.. +.+...+..+..+|...|++++|.+.|+.+.+.+.. +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67889999999999887        432 556678888888899999999999999998887665 77888888999999


Q ss_pred             cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 010740          369 MGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV  448 (502)
Q Consensus       369 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  448 (502)
                      .|++++|.+.|++..+.. +-+...+..+..++...|++++ ++.|+.+.+.+ +.+...|..+..++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999988763 2255778888889999999999 99999888865 55778888899999999999999999


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 010740          449 YKRMKEKHCRPD-SETFSIMTEAYAKEGM  476 (502)
Q Consensus       449 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~  476 (502)
                      |+++.+.  .|+ ...+..+..++...|+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            9988875  344 5577777777766555

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.09  E-value=2e-07  Score=82.71  Aligned_cols=152  Identities=10%  Similarity=-0.043  Sum_probs=74.6

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc-----
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVD--MMERWYEKFRNFGIDPETRTFNILIGAYGKKRM-----  336 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----  336 (502)
                      +++++++++++.+++..  +.+..+|+.-.-++.+.|.++  ++++.++++.+.+ +-|...|+.....+.+.+.     
T Consensus       124 ~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          124 FDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence            34555555555555432  234444544444444455444  5555555555443 3444445444444444443     


Q ss_pred             -HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 010740          337 -YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH-MEYTFEQMHAEG--MKADTKTFCCLINGYANAGLFHKVIS  412 (502)
Q Consensus       337 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~  412 (502)
                       ++++++.++.+....+. |...|+.+...+.+.|+... +..+..++.+.+  -..+...+..+..+|.+.|+.++|.+
T Consensus       201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence             55666666666665554 66666666665555555322 333444433221  12234444555555555555555555


Q ss_pred             HHHHHHh
Q 010740          413 SVRLASK  419 (502)
Q Consensus       413 ~~~~~~~  419 (502)
                      +++.+.+
T Consensus       280 ~~~~l~~  286 (306)
T 3dra_A          280 VYDLLKS  286 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.08  E-value=9.8e-10  Score=110.35  Aligned_cols=173  Identities=11%  Similarity=-0.067  Sum_probs=125.0

Q ss_pred             HhhhcHHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          119 VLKKQWFQALQVFEMLK--------EQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      ...|++++|++.|+.+.        +..  +.+...+..+...+...|++++|.+.|+++.+.. +.+...|..+..++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence            56788888888888877        432  4456678888888888888888888888887764 456778888888888


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      ..|++++|++.|++..+..  +.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|+
T Consensus       479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888888877643  4566777788888888888888 8888887776433 6677777888888888888888


Q ss_pred             HHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010740          271 RVLSGMLESATCKPD-VWTMNTILSVFANKGQ  301 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  301 (502)
                      +.|++.++.   .|+ ...+..+..++...++
T Consensus       555 ~~~~~al~l---~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          555 RTLDEVPPT---SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHTSCTT---STTHHHHHHHHHHHTC----
T ss_pred             HHHHhhccc---CcccHHHHHHHHHHHHccCC
Confidence            888777543   344 4455556666555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.08  E-value=4.8e-09  Score=103.47  Aligned_cols=155  Identities=7%  Similarity=-0.092  Sum_probs=115.4

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740          299 KGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT  378 (502)
Q Consensus       299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  378 (502)
                      .|++++|++.|++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478889999998887654 556788888899999999999999999999887654 778888899999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 010740          379 FEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKA---DDLMEMERVYKRMKEK  455 (502)
Q Consensus       379 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~  455 (502)
                      |++..+.. +.+...+..+..+|...|++++|.+.++.+.+.. +.+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99988764 3356788888999999999999999999888864 55677888888999988   9999999999998886


Q ss_pred             CC
Q 010740          456 HC  457 (502)
Q Consensus       456 g~  457 (502)
                      +.
T Consensus       158 ~p  159 (568)
T 2vsy_A          158 GV  159 (568)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=2.7e-09  Score=87.47  Aligned_cols=163  Identities=6%  Similarity=-0.024  Sum_probs=112.0

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YA  402 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~  402 (502)
                      +..+...+...|++++|...|+...+.... +...+..+...+...|++++|...|++.....  |+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            334455666677777777777766555443 56677777777777777777777777766542  344333222211 12


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHH
Q 010740          403 NAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVY  481 (502)
Q Consensus       403 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~  481 (502)
                      ..+...+|...++...+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...|...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2223345677788777754 5567888888999999999999999999988865432 3567888889999999999999


Q ss_pred             HHHHHHHHh
Q 010740          482 ALEQEKLQM  490 (502)
Q Consensus       482 ~~~~~~~~~  490 (502)
                      ..|++++..
T Consensus       165 ~~y~~al~~  173 (176)
T 2r5s_A          165 SKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=2.2e-08  Score=85.70  Aligned_cols=193  Identities=11%  Similarity=-0.031  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh--HHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGID-P-ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTS--STYN  360 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~  360 (502)
                      +...+..+...+...|++++|+..|+++...... + ....+..+..+|.+.|++++|...|+.+.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4455666778888999999999999998874311 1 1357778888999999999999999999887654222  2444


Q ss_pred             HHHHHHHh------------------cCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          361 NVIEAFSD------------------MGDAKHMEYTFEQMHAEGMKADTK-TFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       361 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      .+..++..                  .|++++|...|+++++.  .|+.. ........    +      .+....    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH----
Confidence            45555544                  34555555555555543  22211 11110000    0      000000    


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccc
Q 010740          422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGH  497 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  497 (502)
                          ......+...|.+.|++++|+..|+++.+.....  ....+..+..+|.+.|++++|.+.++.+....|....+
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence                0011346677889999999999999999863221  12568889999999999999999999999888776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=1.9e-08  Score=85.05  Aligned_cols=176  Identities=13%  Similarity=-0.003  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 010740          126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS----LIDEAFVT  201 (502)
Q Consensus       126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~  201 (502)
                      +|++.|+...+.|    +..++..+...|...+++++|...|++..+.|   +...+..|...|.. +    ++++|+++
T Consensus         4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            4667777777655    67788888888888888888888888887764   56677777777776 5    78888888


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhc----cCChHHHHHH
Q 010740          202 LNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSVT-PNTVTQNIVLGGYGK----AGMFDQMERV  272 (502)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~----~g~~~~a~~~  272 (502)
                      |++..+.    -+...+..|...|..    .+++++|.+.|++..+.|.. .+...+..|...|..    .+++++|...
T Consensus        76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            8887663    456667777777766    67788888888887776532 125666677777766    6677888888


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010740          273 LSGMLESATCKPDVWTMNTILSVFANK-G-----QVDMMERWYEKFRNFG  316 (502)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~  316 (502)
                      |++..+.   ..+...+..+...|... |     ++++|..+|++..+.|
T Consensus       152 ~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          152 FKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            8777653   12444566666666543 2     6777777777776655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=8.8e-09  Score=91.74  Aligned_cols=164  Identities=12%  Similarity=0.021  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHH-HH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYST-LI  222 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-ll  222 (502)
                      ...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...   .|+...... ..
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~  192 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHH
Confidence            3445555555555666666666666555543 334555555555666666666666666555443   233322221 12


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQV  302 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (502)
                      ..+...++.+.|...+++...... .+...+..+...+...|++++|+..|.++++...-..+...+..++..+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            223444555555555555554422 2455555555555555555555555555554421111234455555555555555


Q ss_pred             HHHHHHHHHH
Q 010740          303 DMMERWYEKF  312 (502)
Q Consensus       303 ~~a~~~~~~~  312 (502)
                      ++|...|++.
T Consensus       272 ~~a~~~~r~a  281 (287)
T 3qou_A          272 DALASXYRRQ  281 (287)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            5555555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=7.4e-09  Score=92.23  Aligned_cols=169  Identities=10%  Similarity=0.021  Sum_probs=124.7

Q ss_pred             CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH-H
Q 010740          318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFC-C  396 (502)
Q Consensus       318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~  396 (502)
                      +.+...+..+...+...|++++|...|+.+.+.... +...+..+...+...|++++|...++++...  .|+..... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            444555666777777788888888888887777655 6777778888888888888888888877654  34544322 2


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEG  475 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g  475 (502)
                      ....+...++.++|...++...... +.+...+..+...+...|++++|+..|+++....... +...+..++..|...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2333566777778888888887764 5677888888888888899999999888888764321 2567888888888889


Q ss_pred             CcHHHHHHHHHHHHh
Q 010740          476 MNDKVYALEQEKLQM  490 (502)
Q Consensus       476 ~~~~A~~~~~~~~~~  490 (502)
                      +.++|...+++.+..
T Consensus       270 ~~~~a~~~~r~al~~  284 (287)
T 3qou_A          270 TGDALASXYRRQLYA  284 (287)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHH
Confidence            988888888887764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.04  E-value=4.1e-09  Score=86.34  Aligned_cols=161  Identities=14%  Similarity=0.046  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH-H
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA-C  225 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~  225 (502)
                      +..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++.....   |+...+..+... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence            3344444555555555555555544432 3344555555555555555555555555554421   233222211111 1


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740          226 VDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMM  305 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  305 (502)
                      ...+....+...+++..+.... +...+..+...+...|++++|...|+++++...-..+...+..+..++...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            1111122234444444433211 344444444444445555555555544443211111223444444444444444444


Q ss_pred             HHHHHHH
Q 010740          306 ERWYEKF  312 (502)
Q Consensus       306 ~~~~~~~  312 (502)
                      ...|++.
T Consensus       164 ~~~y~~a  170 (176)
T 2r5s_A          164 ASKYRRQ  170 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=3.9e-08  Score=83.18  Aligned_cols=141  Identities=13%  Similarity=0.075  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----cHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKR----MYDKMSSV  343 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~  343 (502)
                      +|++.|++..+.    -+...+..+...|...+++++|+.+|++..+.|   +...+..|...|.. +    ++++|.+.
T Consensus         4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            345555555442    255556666666666666666666666665543   34445555555554 4    55555555


Q ss_pred             HHHHHHcCCCCChHHHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 010740          344 MEYMRKLQFPWTSSTYNNVIEAFSD----MGDAKHMEYTFEQMHAEGMK-ADTKTFCCLINGYAN----AGLFHKVISSV  414 (502)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~  414 (502)
                      |+...+.+   +...+..|...|..    .+++++|.+.|++..+.|.. .....+..|...|..    .+++++|..+|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            55554432   33444444444444    44555555555554443210 013344444444444    44444444444


Q ss_pred             HHHHh
Q 010740          415 RLASK  419 (502)
Q Consensus       415 ~~~~~  419 (502)
                      +...+
T Consensus       153 ~~A~~  157 (212)
T 3rjv_A          153 KGSSS  157 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.02  E-value=1.4e-08  Score=100.14  Aligned_cols=154  Identities=12%  Similarity=-0.016  Sum_probs=117.6

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFV  200 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  200 (502)
                      .|++++|++.|+.+.+..  +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            478899999999887763  5567889999999999999999999999998875 5568889999999999999999999


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHHH
Q 010740          201 TLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA---GMFDQMERVLSGML  277 (502)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~  277 (502)
                      .|++..+..  +.+...+..+..++...|++++|.+.+++..+... .+...+..+...+...   |++++|.+.+++.+
T Consensus        79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999988753  56788899999999999999999999999888743 3678888899999999   99999999999988


Q ss_pred             HcC
Q 010740          278 ESA  280 (502)
Q Consensus       278 ~~~  280 (502)
                      +..
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.02  E-value=2.6e-09  Score=84.86  Aligned_cols=142  Identities=10%  Similarity=-0.015  Sum_probs=71.8

Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010740          331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a  410 (502)
                      +...|++++|+..+......... +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            34445555555555544432211 23334445555555556666655555555542 22445555555566666666666


Q ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          411 ISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERV-YKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      +..|+.+.+.. +.+..+|..+...|.+.|++++|.+. +++..+.... ++..|......+...|+
T Consensus        85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            66665555543 33455555566666666665544433 3555543211 44455555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.02  E-value=3e-09  Score=84.45  Aligned_cols=141  Identities=11%  Similarity=-0.025  Sum_probs=97.0

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...|++++|+..++......  +-+...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..+|...|++++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            345678888888887766542  2234456677788888888888888888887764 4567778888888888888888


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETL-YQDMDERSVTPNTVTQNIVLGGYGKAG  264 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g  264 (502)
                      |+..|++..+..  +-+..+|..+...+.+.|+++++.+. +++..+.... +..+|......+...|
T Consensus        84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            888888877642  45677777777788887777655544 4666665322 5566666655555555

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.99  E-value=7.5e-09  Score=93.29  Aligned_cols=225  Identities=10%  Similarity=0.023  Sum_probs=157.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740          228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK-AGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMME  306 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  306 (502)
                      .|++++|.+++++..+....           .+.+ .++++.|...|.+.                ...|...|++++|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence            46778888888877654111           1233 57788888777765                34677899999999


Q ss_pred             HHHHHHHhC----CCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC---C--ChHHHHHHHHHHHhcCCHhHHH
Q 010740          307 RWYEKFRNF----GID-PETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP---W--TSSTYNNVIEAFSDMGDAKHME  376 (502)
Q Consensus       307 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~  376 (502)
                      ..|.+..+.    +-. .-..+|+.+..+|...|++++|...|++..+....   +  -..++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            999887653    111 11457888899999999999999999987664211   1  13577888888888 9999999


Q ss_pred             HHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC-hHHHHHHHHHHHHcCCHHHHH
Q 010740          377 YTFEQMHAEGMKA-D----TKTFCCLINGYANAGLFHKVISSVRLASKLQ----IAEN-VSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       377 ~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~  446 (502)
                      ..|++..+..... +    ..++..+...|...|++++|+..++++.+..    ..+. ...+..++.++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999887542111 1    3578888999999999999999999887742    1111 235667777888889999999


Q ss_pred             HHHHHHHHCCCC-CCHH---HHHHHHHHHHhcCCcHHHHH
Q 010740          447 RVYKRMKEKHCR-PDSE---TFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       447 ~~~~~~~~~g~~-p~~~---~~~~l~~~~~~~g~~~~A~~  482 (502)
                      ..|++.. .... ++..   ....++.++ ..|+.+.+.+
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            9999998 4211 1221   334455555 5677666655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.99  E-value=1.5e-07  Score=80.33  Aligned_cols=205  Identities=11%  Similarity=-0.020  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 010740          178 TPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP-DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNT--VTQN  254 (502)
Q Consensus       178 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~  254 (502)
                      +...+..+...+...|++++|+..|+++.+.....+ ....+..+..++.+.|++++|...|+++.+.......  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344555566667777777777777777665321111 1345666677777777777777777777664322111  1333


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 010740          255 IVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKK  334 (502)
Q Consensus       255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  334 (502)
                      .+..++...+..     .++             .|..+...+...|++++|...|+++++.. +-+..........    
T Consensus        83 ~~g~~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----  139 (225)
T 2yhc_A           83 MRGLTNMALDDS-----ALQ-------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----  139 (225)
T ss_dssp             HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----
T ss_pred             HHHHHHHhhhhh-----hhh-------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----
Confidence            333333332210     000             11122233345677788888888877642 2222222211110    


Q ss_pred             CcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHH
Q 010740          335 RMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD----TKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       335 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a  410 (502)
                      +      .+...+.        .....+...+.+.|++++|...|+++.+..  |+    ...+..+..++.+.|++++|
T Consensus       140 ~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          140 V------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA  203 (225)
T ss_dssp             H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence            0      0000000        112345667888889999998888888753  33    24677788888899999999


Q ss_pred             HHHHHHHHhcC
Q 010740          411 ISSVRLASKLQ  421 (502)
Q Consensus       411 ~~~~~~~~~~~  421 (502)
                      .+.++.+...+
T Consensus       204 ~~~~~~l~~~~  214 (225)
T 2yhc_A          204 EKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhhC
Confidence            98888877754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=1.8e-08  Score=90.81  Aligned_cols=229  Identities=7%  Similarity=-0.021  Sum_probs=115.4

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF  199 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  199 (502)
                      ..|++++|.++++...+..  +..         .+...++++.|...|.++               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3577888888888766532  111         011135555555555543               23444555666655


Q ss_pred             HHHHHhhcCC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHH
Q 010740          200 VTLNQMKTLP---NCQ-PDVYTYSTLIKACVDAMRFELIETLYQDMDER----SVTP-NTVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       200 ~~~~~~~~~~---~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      +.|.+..+..   +.. .-..+|+.+..+|...|++++|...|++..+.    |-.. -..++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            5555443210   000 01234555666666666666666666554432    1110 12455556666666 6666666


Q ss_pred             HHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCcHHHHH
Q 010740          271 RVLSGMLESATCKP----DVWTMNTILSVFANKGQVDMMERWYEKFRNF----GIDPE-TRTFNILIGAYGKKRMYDKMS  341 (502)
Q Consensus       271 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~  341 (502)
                      ..|++.++...-..    ...++..+...|...|++++|+..|++....    +..+. ...+..+..++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            66666543210000    1345666666666677777777666666542    11111 124555555666667777777


Q ss_pred             HHHHHHHHcCCCC-Ch---HHHHHHHHHHHhcCCHhHHHH
Q 010740          342 SVMEYMRKLQFPW-TS---STYNNVIEAFSDMGDAKHMEY  377 (502)
Q Consensus       342 ~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~  377 (502)
                      ..|++.. ..... +.   .....++.++ ..|+.+.+.+
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            7776666 43221 11   2233444444 4556555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.94  E-value=3.3e-07  Score=81.87  Aligned_cols=164  Identities=12%  Similarity=-0.030  Sum_probs=112.9

Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCCC-CCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 010740          328 IGAYGKKRMYDKMSSVMEYMRKLQFP-WTS----STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMK-AD----TKTFCCL  397 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l  397 (502)
                      +..+...|++++|..+++...+.... ++.    ..+..+...+...+++++|...|++..+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            55566677777777777776664322 111    12333555566667788888888887763221 22    2357788


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhc-----CCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 010740          398 INGYANAGLFHKVISSVRLASKL-----QIA-ENVSFYNAVISACIKADDLMEMERVYKRMKEK----HCRPD-SETFSI  466 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~  466 (502)
                      ...|...|++++|...++.+.+.     +.. ....+|..+...|.+.|++++|+..+++..+.    +..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            88888888888888888877642     111 12347788889999999999999999887753    22222 668888


Q ss_pred             HHHHHHhcCC-cHHHHHHHHHHHHhh
Q 010740          467 MTEAYAKEGM-NDKVYALEQEKLQML  491 (502)
Q Consensus       467 l~~~~~~~g~-~~~A~~~~~~~~~~~  491 (502)
                      +..+|.+.|+ +++|.+.+++++...
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999995 599999999998864

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.93  E-value=1.1e-06  Score=84.35  Aligned_cols=331  Identities=8%  Similarity=-0.098  Sum_probs=205.1

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHH
Q 010740          124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL-IDEAFVTL  202 (502)
Q Consensus       124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~  202 (502)
                      .+.|..+|+.+...   -|.              |+++.+..+|++.+..  .|+...|...+....+.+. .+....+|
T Consensus        11 i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f   71 (493)
T 2uy1_A           11 LSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY   71 (493)
T ss_dssp             -CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred             hHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            66666777666553   222              8899999999999985  5899999999888877764 45566777


Q ss_pred             HHhhcCCC-CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------------cC
Q 010740          203 NQMKTLPN-CQPDVYTYSTLIKACV----DAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGK-------------AG  264 (502)
Q Consensus       203 ~~~~~~~~-~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-------------~g  264 (502)
                      +.....-| .+.+...|...+..+.    ..++.+.+.++|++.+......-...|......-..             .+
T Consensus        72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~  151 (493)
T 2uy1_A           72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP  151 (493)
T ss_dssp             HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence            77665323 2456778888887654    346788899999999874222112233322221111             12


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcH
Q 010740          265 MFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG--Q-----VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMY  337 (502)
Q Consensus       265 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  337 (502)
                      .+..|..+++.+..... ..+...|...+..-...+  -     .+.+..+|++++... +.+...|...+..+.+.|+.
T Consensus       152 ~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~  229 (493)
T 2uy1_A          152 IFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence            23344444444432100 113345555554433221  1     345778999988743 66688888888888899999


Q ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcC
Q 010740          338 DKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG---------MKA---DTKTFCCLINGYANAG  405 (502)
Q Consensus       338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~~g  405 (502)
                      +.|..++++....  +.+...|..    |....+.++.   ++.+.+.-         ..+   ....|...+..+.+.+
T Consensus       230 ~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~  300 (493)
T 2uy1_A          230 EKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR  300 (493)
T ss_dssp             HHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence            9999999999988  334443332    2222122222   33332210         001   1245666677777788


Q ss_pred             ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 010740          406 LFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALE  484 (502)
Q Consensus       406 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  484 (502)
                      +.+.|..+|+.+ ... ..+..+|......-... ++.+.|..+|+...+.. .-+...|...++...+.|+.++|..+|
T Consensus       301 ~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~  377 (493)
T 2uy1_A          301 GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALF  377 (493)
T ss_dssp             CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            899999999998 321 23444554333322233 47999999999998863 224666777888888999999999988


Q ss_pred             HHH
Q 010740          485 QEK  487 (502)
Q Consensus       485 ~~~  487 (502)
                      +++
T Consensus       378 er~  380 (493)
T 2uy1_A          378 KRL  380 (493)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            886

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.90  E-value=7.4e-08  Score=81.53  Aligned_cols=126  Identities=10%  Similarity=-0.024  Sum_probs=71.3

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYAN  403 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~  403 (502)
                      +..+...+...|++++|...|.+..    .++...+..+...+...|++++|...|++..+.. +.+...+..+..+|..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3344555556666666666665542    3355566666666666666666666666665542 2244555566666666


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          404 AGLFHKVISSVRLASKLQIAENV----------------SFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .|++++|.+.++.+.+.. +.+.                ..+..+..+|...|++++|.+.|++..+.
T Consensus        84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            666666666666655542 2222                44555555666666666666666665553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.89  E-value=8.7e-07  Score=79.39  Aligned_cols=176  Identities=6%  Similarity=-0.121  Sum_probs=104.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-C-
Q 010740          224 ACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAG-MFDQMERVLSGMLESATCKPDVWTMNTILSVFANK-G-  300 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-  300 (502)
                      .....+..++|+++++.++..+.. +..+|+.--..+...| .+++++++++.++...  +.+..+|+.-..++... + 
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCC
Confidence            334444556777777777766433 5556666666666666 4777777777776542  34556666665555555 5 


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD--------KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD-  371 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  371 (502)
                      ++++++++++++.+.. +.+..+|+.-.-.+.+.|.++        ++++.++++.+..+. |...|+.....+.+.++ 
T Consensus       140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred             ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence            6677777777776644 556666665555555555554        666666666666555 66666666666666554 


Q ss_pred             ------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740          372 ------AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG  405 (502)
Q Consensus       372 ------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  405 (502)
                            ++++++.+++++... +-|...|+.+-..+.+.|
T Consensus       218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence                  455556665555542 224444544444444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=4.4e-08  Score=74.96  Aligned_cols=102  Identities=12%  Similarity=-0.002  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      .+......|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|++++|+..|++..+.+.. +...|..+..+|.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            45556666666666666666666666653 445666666666666777777777777666664322 4566666666677


Q ss_pred             hcCCcHHHHHHHHHHHHhhhhccc
Q 010740          473 KEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       473 ~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                      ..|++++|++.|+++++..|.+..
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~  116 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEE  116 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHH
Confidence            777777777777777766665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.88  E-value=4.4e-07  Score=81.03  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=39.9

Q ss_pred             HHHHhccCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 010740          257 LGGYGKAGMFDQMERVLSGMLESATCKPDVW----TMNTILSVFANKGQVDMMERWYEKFRNFGID-PE----TRTFNIL  327 (502)
Q Consensus       257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  327 (502)
                      +..+...|++++|.+++++..+.....++..    .+..+...+...|++++|+..|++....... .+    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            3445555555555555555544322122211    1222334444444555555555555442111 11    1134444


Q ss_pred             HHHHHccCcHHHHHHHHHHHH
Q 010740          328 IGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      ..+|...|++++|...|+++.
T Consensus       162 g~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            444555555555555544443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.86  E-value=3e-06  Score=75.93  Aligned_cols=173  Identities=9%  Similarity=-0.058  Sum_probs=133.0

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C-CHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSG-QPELARKVFNEMVEEGIEPTPELYTALLAAYCRN-S-LIDE  197 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~  197 (502)
                      .+..++|+++++.+....  +-+..+|+.--.++...| +++++++.++.++... +-+..+|+.-..++... + ++++
T Consensus        67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence            445678999999998864  556778998888888888 5999999999999875 67788888887777776 7 8899


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE--------LIETLYQDMDERSVTPNTVTQNIVLGGYGKAGM----  265 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----  265 (502)
                      ++++++++.+.+  +.|-.+|+.-.-++.+.+.++        ++++.++++.+..+. |...|+.....+.+.+.    
T Consensus       144 EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          144 EIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            999999999853  678888887777766666665        888888888887555 77888887777777765    


Q ss_pred             ---hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010740          266 ---FDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ  301 (502)
Q Consensus       266 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (502)
                         ++++++.+++.+...  +-|...|+.+-..+.+.|.
T Consensus       221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence               677888887777653  4466667666655555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.86  E-value=3.6e-07  Score=81.62  Aligned_cols=166  Identities=11%  Similarity=-0.032  Sum_probs=104.0

Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CCC--HHHHH
Q 010740          326 ILIGAYGKKRMYDKMSSVMEYMRKLQFPWT-----SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM---KAD--TKTFC  395 (502)
Q Consensus       326 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~  395 (502)
                      ..+..+...|++++|.+.+....+......     ...+..+...+...|++++|...+++..+...   .+.  ..+++
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344455555666666666655554322211     01223344555666777777777777664321   111  34677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc--CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CHHHH
Q 010740          396 CLINGYANAGLFHKVISSVRLASKL--QIAE----NVSFYNAVISACIKADDLMEMERVYKRMKEKH----CRP-DSETF  464 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~p-~~~~~  464 (502)
                      .+...|...|++++|...++++.+.  ..+.    ...++..+..+|...|++++|+..+++..+..    ... -..+|
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            7778888888888888888776632  1111    12577788888888888888888888776431    111 15677


Q ss_pred             HHHHHHHHhcCCcHHH-HHHHHHHHHhh
Q 010740          465 SIMTEAYAKEGMNDKV-YALEQEKLQML  491 (502)
Q Consensus       465 ~~l~~~~~~~g~~~~A-~~~~~~~~~~~  491 (502)
                      ..+..+|.+.|++++| ...+++++...
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            8888888888999888 77788877653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.86  E-value=8.7e-08  Score=75.60  Aligned_cols=101  Identities=9%  Similarity=-0.003  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY  471 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  471 (502)
                      ..+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....... ++..|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            356666777777777777777777777764 556777777777777777777777777777775432 566777777777


Q ss_pred             HhcCCcHHHHHHHHHHHHhhhhc
Q 010740          472 AKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       472 ~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .+.|++++|++.|+++++..++.
T Consensus       115 ~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCH
Confidence            77777777777777777766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.83  E-value=3.1e-07  Score=82.03  Aligned_cols=166  Identities=7%  Similarity=0.003  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-
Q 010740          180 ELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV------YTYSTLIKACVDAMRFELIETLYQDMDERSV---TPN-  249 (502)
Q Consensus       180 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~-  249 (502)
                      ..+...+..+...|++++|++.+.+..+..  +...      ..+..+...+...|++++|...+++..+...   .+. 
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345556677778888888888887766532  2221      1233344555666777777777777664321   111 


Q ss_pred             -HHHHHHHHHHHhccCChHHHHHHHHHHH---HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC
Q 010740          250 -TVTQNIVLGGYGKAGMFDQMERVLSGML---ESATCKP--DVWTMNTILSVFANKGQVDMMERWYEKFRNFG----IDP  319 (502)
Q Consensus       250 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~  319 (502)
                       ..+++.+...|...|++++|...+++.+   +..+..+  ...++..+..+|...|++++|+..+++..+..    ...
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence             3466677777777777777777777765   2211111  11456666667777777777777776655321    111


Q ss_pred             -CHHHHHHHHHHHHccCcHHHH-HHHHHHH
Q 010740          320 -ETRTFNILIGAYGKKRMYDKM-SSVMEYM  347 (502)
Q Consensus       320 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~  347 (502)
                       -..+|..+..+|.+.|++++| ...++..
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence             134555666666666666666 4445443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.83  E-value=3.1e-07  Score=74.02  Aligned_cols=132  Identities=9%  Similarity=0.077  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...|..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            456667777778888888888888877653 3356778888888888888888888888888764 55677888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHHHhh
Q 010740          437 IKADDLMEMERVYKRMKEKHCRPDSETFSIM--TEAYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      ...|++++|...|+++.+.... +...+..+  +..+.+.|++++|++.+++.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            9999999999999988876432 45555433  334778899999999998877764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.80  E-value=2e-07  Score=71.24  Aligned_cols=91  Identities=10%  Similarity=-0.040  Sum_probs=50.3

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      ....+.+.|++++|++.|+.+.+..  +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++...|
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCC
Confidence            3344455566666666665555442  3445555555555555666666666555555543 334555555555555555


Q ss_pred             CHHHHHHHHHHhhc
Q 010740          194 LIDEAFVTLNQMKT  207 (502)
Q Consensus       194 ~~~~a~~~~~~~~~  207 (502)
                      ++++|++.|++..+
T Consensus        96 ~~~~A~~~~~~al~  109 (126)
T 4gco_A           96 EWSKAQRAYEDALQ  109 (126)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=3.2e-08  Score=78.23  Aligned_cols=98  Identities=7%  Similarity=-0.021  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....... +...+..+..+|..
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence            3444444445555555555555444432 334444444555555555555555555555443211 34444445555555


Q ss_pred             cCCcHHHHHHHHHHHHhhhh
Q 010740          474 EGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~  493 (502)
                      .|++++|++.|+++++..+.
T Consensus       102 ~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHCcC
Confidence            55555555555555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.80  E-value=4.9e-06  Score=74.22  Aligned_cols=191  Identities=6%  Similarity=-0.079  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HhHHHHHH
Q 010740          303 DMMERWYEKFRNFGIDPETRTFNILIGAYGKKR--MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD-AKHMEYTF  379 (502)
Q Consensus       303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~  379 (502)
                      ++++.+++.+.... +.+..+|+.-...+.+.+  .+++++.+++.+.+.... |...|+.-...+...|. ++++++.+
T Consensus        91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            44445554444432 344444444444444444  245555555555554443 45555555444444454 35555555


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc------
Q 010740          380 EQMHAEGMKADTKTFCCLINGYANA--------------GLFHKVISSVRLASKLQIAENVSFYNAVISACIKA------  439 (502)
Q Consensus       380 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  439 (502)
                      +.+++.. .-|...|+.....+...              +.++++++.+..+.... +-|...|+.+-..+.+.      
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence            5555443 12334444433333332              33566677776666653 55666666555444444      


Q ss_pred             -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHhhhhccccccc
Q 010740          440 -----DDLMEMERVYKRMKEKHCRPDSETFSIMTEA-----YAKEGMNDKVYALEQEKLQMLLEASGHWQQ  500 (502)
Q Consensus       440 -----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  500 (502)
                           +.++++++.++++.+.  .||. .|..+..+     ....|..+++...+++..+..|...|.|.+
T Consensus       247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d  314 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  314 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence                 4577888888888875  4554 34332222     224677888999999999999888888765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=7.5e-08  Score=80.70  Aligned_cols=138  Identities=11%  Similarity=0.029  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC--C
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE----GMKA-DTKTFCCLINGYANAGLFHKVISSVRLASKL----QIA--E  424 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~  424 (502)
                      ...+..+...+...|++++|...+++..+.    +..+ ...++..+...+...|++++|...+++..+.    +-.  .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            344444444455555555555555444331    1111 1234555555666666666666666554443    101  1


Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          425 NVSFYNAVISACIKADDLMEMERVYKRMKEKHC-RPD----SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       425 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      ...++..+...+...|++++|...+++..+..- ..+    ..++..+...+...|++++|.+.++++++....
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            133455666666667777777766666553200 011    223456666677777777777777777765433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.79  E-value=6.1e-07  Score=75.77  Aligned_cols=125  Identities=13%  Similarity=0.080  Sum_probs=103.7

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      ....+...|++++|+..|+.+.     .|+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence            4445667899999999998773     4577899999999999999999999999998875 567888999999999999


Q ss_pred             CHHHHHHHHHHhhcCCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010740          194 LIDEAFVTLNQMKTLPNCQPD----------------VYTYSTLIKACVDAMRFELIETLYQDMDERSV  246 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  246 (502)
                      ++++|++.|++..+..  +.+                ...+..+..++...|++++|...|+...+...
T Consensus        86 ~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             CHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            9999999999987742  222                26788888899999999999999999887643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.77  E-value=2.7e-05  Score=69.47  Aligned_cols=188  Identities=5%  Similarity=-0.088  Sum_probs=128.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHhhhcHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHH
Q 010740          101 KAKAKAWVNTVAETFSDHVLKKQWF-QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ----------PELARKVFNE  169 (502)
Q Consensus       101 ~~~~~~~~~~~~~~l~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~  169 (502)
                      ......+ ..+...+......|.++ +|+.+++.+....  +-+..+|+.--..+...+.          +++++.+++.
T Consensus        23 ~~ki~~y-~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~   99 (331)
T 3dss_A           23 EQKLKLY-QSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES   99 (331)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            3444444 33333444455566655 8999999999864  4556677765555544433          6788889988


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCC
Q 010740          170 MVEEGIEPTPELYTALLAAYCRNSL--IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMR-FELIETLYQDMDERSV  246 (502)
Q Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~  246 (502)
                      +.... +-+..+|+.-..++...|+  +++++.+++++.+.+  +.|-.+|+.-.-++...|. ++++++.++.+++..+
T Consensus       100 ~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p  176 (331)
T 3dss_A          100 CLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  176 (331)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence            88765 6688888888877878774  889999999998854  6788888888888888887 5888899998888765


Q ss_pred             CCCHHHHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010740          247 TPNTVTQNIVLGGYGKA--------------GMFDQMERVLSGMLESATCKPDVWTMNTILSVFA  297 (502)
Q Consensus       247 ~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (502)
                      . |...|+.....+.+.              +.++++++.+...+...  +-|...|+-+-..+.
T Consensus       177 ~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          177 S-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLG  238 (331)
T ss_dssp             C-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            5 777777666555444              34666777777666542  334555554433333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=6.1e-07  Score=72.22  Aligned_cols=126  Identities=11%  Similarity=-0.020  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +......+...|++++|+..|+.+.+..  +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3444455566777777777777766653  4456677777777777777777777777777654 445667777777777


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL--IKACVDAMRFELIETLYQDM  241 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~  241 (502)
                      ..|++++|...|++..+..  +.+...+..+  ...+...|++++|.+.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            7777777777777766532  3344444332  23355566666666666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.74  E-value=1.1e-07  Score=77.89  Aligned_cols=121  Identities=8%  Similarity=0.084  Sum_probs=87.0

Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--H
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING-YANAGLF--H  408 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~  408 (502)
                      ...|++++|...+....+.... +...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            4567778888888877776544 67778888888888888888888888877653 2355666777777 6677887  8


Q ss_pred             HHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          409 KVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       409 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            8888888877764 445677777788888888888888888887775

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=8e-08  Score=85.16  Aligned_cols=96  Identities=4%  Similarity=-0.101  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGA  330 (502)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  330 (502)
                      ..+..+...+.+.|++++|...|++.++..  +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344444555555555555555555554431  1244455555555555555555555555555432 3344455555555


Q ss_pred             HHccCcHHHHHHHHHHHHH
Q 010740          331 YGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       331 ~~~~g~~~~a~~~~~~~~~  349 (502)
                      |...|++++|...|....+
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.72  E-value=4.2e-07  Score=82.77  Aligned_cols=97  Identities=10%  Similarity=0.000  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY  471 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  471 (502)
                      ..|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..++
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence            566666667777777777777777766654 445666677777777777777777777777665322 455666667777


Q ss_pred             HhcCCcHHH-HHHHHHHHHh
Q 010740          472 AKEGMNDKV-YALEQEKLQM  490 (502)
Q Consensus       472 ~~~g~~~~A-~~~~~~~~~~  490 (502)
                      .+.|+.++| ..++++|.+.
T Consensus       275 ~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            777777666 4456666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.71  E-value=2.7e-07  Score=72.28  Aligned_cols=99  Identities=8%  Similarity=-0.069  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++....+.. +...+..+..+|..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            3344444555555555555555555443 334455555555555555555555555555554221 34445555555555


Q ss_pred             cCCcHHHHHHHHHHHHhhhhc
Q 010740          474 EGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .|++++|++.|+++++..|.+
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC
Confidence            555555555555555554433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.71  E-value=2.1e-07  Score=80.50  Aligned_cols=129  Identities=15%  Similarity=0.015  Sum_probs=60.8

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHc
Q 010740          362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN--VSFYNAVISACIKA  439 (502)
Q Consensus       362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  439 (502)
                      +...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..++...... .|.  ...+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence            344445555555555555554432  2332233344445555555555555554332211 110  12344455555555


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          440 DDLMEMERVYKRMKEKHCRPD--SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       440 g~~~~a~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      |++++|+..|++.......|.  ...+.....++.+.|+.++|...|+++....|.
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            555555555555543222132  224444455555555555555555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=8.2e-07  Score=67.34  Aligned_cols=97  Identities=19%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      ..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|+.+|+++.+..  +.+..++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~   86 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence            345555555555555555555555555442 2344555555555555555555555555554421  3344455555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 010740          225 CVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       225 ~~~~~~~~~a~~~~~~~~~~  244 (502)
                      +...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            55555555555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.70  E-value=7.5e-08  Score=85.34  Aligned_cols=99  Identities=10%  Similarity=-0.014  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      +...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++..+..  +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            45667777788888888888888888877764 4467778888888888888888888888877642  55677777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC
Q 010740          223 KACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      .++...|++++|...|++..+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888888888776653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.70  E-value=5.2e-07  Score=70.02  Aligned_cols=102  Identities=10%  Similarity=-0.003  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740          390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE  469 (502)
Q Consensus       390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  469 (502)
                      +...+..+...+...|++++|...++.+.... +.+...|..+..++...|++++|...+++..+.+.. +...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            34445555555555555555555555555543 334455555555555555555555555555554321 4455555555


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhhhh
Q 010740          470 AYAKEGMNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~~~  493 (502)
                      +|...|++++|++.++++++..+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            555566666666666665555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.70  E-value=2.7e-07  Score=77.28  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=40.8

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhCCC
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEE----GIE-PTPELYTALLAAYCRNSL  194 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~  194 (502)
                      ..|++++|.+.++.+...  ......++..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus         4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            456666666644444332  1223445566666666666666666666655441    101 112344445555555555


Q ss_pred             HHHHHHHHHHh
Q 010740          195 IDEAFVTLNQM  205 (502)
Q Consensus       195 ~~~a~~~~~~~  205 (502)
                      +++|.+.+++.
T Consensus        82 ~~~A~~~~~~a   92 (203)
T 3gw4_A           82 WDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=1.4e-06  Score=65.97  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISAC  436 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  436 (502)
                      ..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            445555555666666666666666655442 2244555556666666666666666666655543 34455566666666


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          437 IKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       437 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      ...|++++|...|+++.+... .+...+..+...+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~  122 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            666666666666666665422 13444444444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=1.8e-06  Score=74.70  Aligned_cols=190  Identities=10%  Similarity=-0.001  Sum_probs=127.0

Q ss_pred             hhhcHHHHHHHHHHHHhCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC----
Q 010740          120 LKKQWFQALQVFEMLKEQPFYQPKEGTYMKL-------LVLLGKSGQPELARKVFNEMVEE------------GIE----  176 (502)
Q Consensus       120 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~------------~~~----  176 (502)
                      ..+++..|.+.|..+.+..  +-....|..+       ...+...++..++...+..-...            |.-    
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5789999999999988864  5556688877       46666666666665555554431            110    


Q ss_pred             ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 010740          177 ----PTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN--T  250 (502)
Q Consensus       177 ----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~  250 (502)
                          --...+-.+...+...|++++|.++|+.+...   .|+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                00234455667788888888888888888763   2443355566667888888888888887554431 111  2


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740          251 VTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD--VWTMNTILSVFANKGQVDMMERWYEKFRNFG  316 (502)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (502)
                      ..+..+..++...|++++|+..|++.... ...|.  .........++.+.|+.++|..+|+++....
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            36667777788888888888888887532 22143  3355666777788888888888888887643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=1.1e-06  Score=67.33  Aligned_cols=119  Identities=13%  Similarity=0.061  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            4456666667777777777777777776653 2356667777777777788888887777777653 4456677777778


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 010740          436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMN  477 (502)
Q Consensus       436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~  477 (502)
                      +...|++++|...|++..+... .+...+..+..++.+.|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence            8888888888888887777532 2566777777777776664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.68  E-value=3.6e-07  Score=73.63  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVIS  434 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  434 (502)
                      +...+..+...+...|++++|+..|++..+.. +-+...|..+..+|...|++++|+..++.+.+.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34566667777777777777777777777653 2255667777777777777777777777777654 445667777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC
Q 010740          435 ACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +|...|++++|++.|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            777777777777777777664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.68  E-value=3.8e-07  Score=69.73  Aligned_cols=96  Identities=10%  Similarity=-0.081  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence            4444445555555555555555555442 334455555555555555555555555555554221 34455555555555


Q ss_pred             cCCcHHHHHHHHHHHHhh
Q 010740          474 EGMNDKVYALEQEKLQML  491 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~  491 (502)
                      .|++++|++.++++++..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            555555555555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.66  E-value=1.7e-07  Score=74.02  Aligned_cols=94  Identities=13%  Similarity=-0.024  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      .+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..|++.....  +.+...+..+..++
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence            34444444444444444444444444432 2344444444444444444444444444444321  23334444444444


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 010740          226 VDAMRFELIETLYQDMD  242 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~  242 (502)
                      ...|++++|...|+...
T Consensus       100 ~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            44444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.66  E-value=8.4e-07  Score=67.93  Aligned_cols=86  Identities=10%  Similarity=-0.002  Sum_probs=33.8

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...|++++|+..|+.+.+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   98 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVE   98 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHH
Confidence            333444444444444433321  2233334444444444444444444444443332 2223333344444444444444


Q ss_pred             HHHHHHHhh
Q 010740          198 AFVTLNQMK  206 (502)
Q Consensus       198 a~~~~~~~~  206 (502)
                      |...|++..
T Consensus        99 A~~~~~~~~  107 (131)
T 2vyi_A           99 AVAYYKKAL  107 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.65  E-value=5.9e-07  Score=69.17  Aligned_cols=98  Identities=14%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|++.+++..+..  +.+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence            4455555666666666666666666655542 3345555555566666666666666666555431  334555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 010740          224 ACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      ++...|++++|.+.+++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            555666666666666555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.65  E-value=7.9e-08  Score=75.85  Aligned_cols=98  Identities=10%  Similarity=-0.070  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+..  +.+...|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence            3456666666666666777766666666654 4456666666666666666666666666666542  444556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 010740          224 ACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      +|...|++++|...|++..+.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666666654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.64  E-value=2.9e-07  Score=75.26  Aligned_cols=122  Identities=11%  Similarity=0.084  Sum_probs=73.9

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCH-
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA-YCRNSLI-  195 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-  195 (502)
                      +...|++++|+..|+...+..  +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence            445667777777776665543  4455666677777777777777777777666553 3455566666666 5566666 


Q ss_pred             -HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          196 -DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       196 -~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                       ++|+..|+++.+..  +.+...+..+..++...|++++|...|+++.+.
T Consensus        97 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           97 TAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence             66777666666532  344556666666666666666666666666654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.62  E-value=1.5e-06  Score=66.82  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      .+..+..++...|++++|.+.|++..
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333444444444444444333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.58  E-value=2e-06  Score=78.36  Aligned_cols=146  Identities=8%  Similarity=0.031  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 010740          285 DVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIE  364 (502)
Q Consensus       285 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  364 (502)
                      +...+..+...+.+.|++++|+..|++.....  |+...+           ..+.+.++    ..    .....|..+..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~----~~----~~~~~~~nla~  204 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA----QA----LRLASHLNLAM  204 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH----HH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH----HH----HHHHHHHHHHH
Confidence            45677788888888888888888888887643  211000           00111100    00    01345666666


Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 010740          365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLME  444 (502)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  444 (502)
                      +|.+.|++++|+..|++.++.. +.+...+..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.|+.++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777766653 2355666677777777777777777777776653 4456667777777777777776


Q ss_pred             H-HHHHHHHH
Q 010740          445 M-ERVYKRMK  453 (502)
Q Consensus       445 a-~~~~~~~~  453 (502)
                      | ..+|+.|.
T Consensus       283 a~~~~~~~~~  292 (336)
T 1p5q_A          283 REKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6 33555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.58  E-value=6.7e-07  Score=67.70  Aligned_cols=99  Identities=5%  Similarity=-0.119  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK  473 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~  473 (502)
                      +..+...+...|++++|...++.+.+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..+|.+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            3445666777788888888887777764 556777777788888888888888888887775432 56677777888888


Q ss_pred             cCCcHHHHHHHHHHHHhhhhc
Q 010740          474 EGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       474 ~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      .|++++|++.++++++..|..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            888888888888887776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.58  E-value=1.1e-06  Score=65.89  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3445555566666666666666666665542 2244555556666666666666666666655543 3345555556666


Q ss_pred             HHHcCCHHHHHHHHHHHHHC
Q 010740          436 CIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       436 ~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            66666666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.57  E-value=1.5e-07  Score=78.58  Aligned_cols=130  Identities=10%  Similarity=-0.028  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD---------------TKTFCCLINGYANAGLFHKVISSVRLASKLQI  422 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  422 (502)
                      .+..+...+...|++++|...|++..+....-.               ...+..+..+|...|++++|+..++.+.+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            344455555566666666666666554321100               2566777777778888888888887777763 


Q ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH-HHHHHHHH
Q 010740          423 AENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVY-ALEQEKLQ  489 (502)
Q Consensus       423 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  489 (502)
                      +.+...+..+..+|...|++++|++.|++..+... -+...+..+..++...++.+++. ..++.+..
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667777777888888888888888887776532 25666777777777776666665 44555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.56  E-value=9e-07  Score=67.67  Aligned_cols=97  Identities=10%  Similarity=0.052  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI--AEN----VSFYN  430 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~  430 (502)
                      ..+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.++..++...  ..+    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345555666666666666666666665542 22345555566666666666666666665554310  111    12444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          431 AVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .+..++...|++++|++.|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455555555666666666655554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.53  E-value=2.1e-06  Score=65.48  Aligned_cols=95  Identities=14%  Similarity=0.000  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      .+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..  +.+...|..+..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~   82 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence            34444444445555555555555444432 2334444445555555555555555555444421  33344444444455


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 010740          226 VDAMRFELIETLYQDMDE  243 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~  243 (502)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            555555555555544443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=6e-06  Score=61.70  Aligned_cols=86  Identities=16%  Similarity=-0.024  Sum_probs=34.1

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...|++++|+..|+.+....  +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~   90 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE   90 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHH
Confidence            333444444444444433321  2233334444444444444444444444443332 2233333444444444444444


Q ss_pred             HHHHHHHhh
Q 010740          198 AFVTLNQMK  206 (502)
Q Consensus       198 a~~~~~~~~  206 (502)
                      |.+.+++..
T Consensus        91 A~~~~~~~~   99 (118)
T 1elw_A           91 AKRTYEEGL   99 (118)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.49  E-value=1.5e-06  Score=64.40  Aligned_cols=101  Identities=12%  Similarity=0.054  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP--DSETFSIMTE  469 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p--~~~~~~~l~~  469 (502)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.|++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            345556666667777777777777666653 4456667777777777777777777777777652 22  4667777777


Q ss_pred             HHHhc-CCcHHHHHHHHHHHHhhhhc
Q 010740          470 AYAKE-GMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       470 ~~~~~-g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +|.+. |++++|.+.++++....+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            77777 77888887777777766543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=1.2e-05  Score=76.08  Aligned_cols=197  Identities=9%  Similarity=-0.008  Sum_probs=105.6

Q ss_pred             HHHHhccCChHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 010740          257 LGGYGKAGMFDQMERVLSGMLESATCKPD---------------VWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDPE  320 (502)
Q Consensus       257 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~  320 (502)
                      ...+.+.|++++|++.|..+++...-..+               ...+..+...|...|++++|.+.+.++...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            44567778888888888888765332221               1235667777777777777777777665421 0111


Q ss_pred             H----HHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc--CC--
Q 010740          321 T----RTFNILIGAYGKKRMYDKMSSVMEYMRKL----QFPW-TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE--GM--  387 (502)
Q Consensus       321 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~--  387 (502)
                      .    .+.+.+...+...|+++.+..++......    +..+ -..++..+...+...|++++|..+++++...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    12222333334456677777666655432    1111 2345556666666666666666666665432  11  


Q ss_pred             CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          388 KA-DTKTFCCLINGYANAGLFHKVISSVRLASKL--QIAEN----VSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       388 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      ++ ...++..++..|...|++++|..+++.....  .+..+    ...+..+...+...|++++|...|.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            11 1234555666666666666666666554432  11111    2334444455555566666666555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.48  E-value=3.1e-06  Score=68.04  Aligned_cols=97  Identities=12%  Similarity=0.033  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      ...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|+..|++..+..  +.+...|..+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~   87 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            3445555555555555555555555555543 3345555555555555555555555555555432  334445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 010740          224 ACVDAMRFELIETLYQDMDE  243 (502)
Q Consensus       224 ~~~~~~~~~~a~~~~~~~~~  243 (502)
                      ++...|++++|...|++..+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            55555555555555555444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.48  E-value=3.6e-06  Score=70.10  Aligned_cols=124  Identities=10%  Similarity=-0.005  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK--------------EGTYMKLLVLLGKSGQPELARKVFNEMVEEG  174 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  174 (502)
                      ..+......+...|++++|+..|+.+.+.....++              ...|..+..++...|++++|...+++..+..
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            33444555677889999999999988775311111              1566666677777777777777777766653


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740          175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE  235 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  235 (502)
                       +.+...+..+..+|...|++++|++.|++..+..  +.+...+..+..++...++.+++.
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence             4456666666777777777777777777666532  345555666666655555554444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=7.7e-06  Score=77.45  Aligned_cols=201  Identities=12%  Similarity=0.006  Sum_probs=138.8

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPK---------------EGTYMKLLVLLGKSGQPELARKVFNEMVEEG-IEP  177 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~  177 (502)
                      -.+.+...|++++|++.|..+.+......+               ..++..++..|...|++++|.+.+..+.+.- -.+
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            345667889999999999998875421211               1247789999999999999999999876531 112


Q ss_pred             CH----HHHHHHHHHHHhCCCHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 010740          178 TP----ELYTALLAAYCRNSLIDEAFVTLNQMKT----LPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER--SV-  246 (502)
Q Consensus       178 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~-  246 (502)
                      +.    .+.+.+...+...|++++|.++++....    .+....-..++..+...+...|++++|..+++++...  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            22    2233344444556889999888877642    1112223567788899999999999999999887642  11 


Q ss_pred             --CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          247 --TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA---TCKPD--VWTMNTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       247 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                        .....++..++..|...|++++|...+++.....   +..+.  ...+..+...+...|++++|...|.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              1124578888899999999999999998875431   11111  24456667777888999999888877654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.48  E-value=3.2e-06  Score=65.93  Aligned_cols=107  Identities=11%  Similarity=0.020  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------Ch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAE------NV-----SFYNAVISACIKADDLMEMERVYKRMKEK-----HC  457 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~  457 (502)
                      +......+...|++++|+..|+..++.....      +.     ..|..+..++.+.|++++|+..+++.++.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3445555666666666666666666542110      22     27888888888899999999888888874     11


Q ss_pred             CCC-HHHH----HHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccccc
Q 010740          458 RPD-SETF----SIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQQ  500 (502)
Q Consensus       458 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  500 (502)
                      .|+ ...|    .....++...|++++|++.|+++++..|++.+-..+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~  141 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG  141 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            454 5578    899999999999999999999999999998876543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.47  E-value=1.2e-06  Score=68.49  Aligned_cols=95  Identities=11%  Similarity=0.016  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKAC  225 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  225 (502)
                      .+..+...+...|++++|...|++..... +.+...|..+..++...|++++|+..|++.....  +.+...+..+..++
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence            44455555566666666666666655543 3455555556666666666666666666655532  34445555555566


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 010740          226 VDAMRFELIETLYQDMDE  243 (502)
Q Consensus       226 ~~~~~~~~a~~~~~~~~~  243 (502)
                      ...|++++|.+.|+...+
T Consensus        97 ~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666655544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.45  E-value=2.9e-06  Score=62.79  Aligned_cols=98  Identities=11%  Similarity=-0.014  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCC--CHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQP--DVYTYSTL  221 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l  221 (502)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.|++..+..  +.  +...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l   82 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAK   82 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHH
Confidence            3455556666666666666666666665543 3345555666666666666666666666655532  23  45555555


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHhC
Q 010740          222 IKACVDA-MRFELIETLYQDMDER  244 (502)
Q Consensus       222 l~~~~~~-~~~~~a~~~~~~~~~~  244 (502)
                      ..++... |++++|.+.++.....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhc
Confidence            5666666 6666666666655544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=4.2e-06  Score=65.66  Aligned_cols=98  Identities=11%  Similarity=-0.057  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHH
Q 010740          355 TSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYN  430 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  430 (502)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|...++...+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4556666666677777777777777776654  344    4556666666667777777777776666543 33455666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          431 AVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            6666666677777777777666654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.44  E-value=5.4e-06  Score=63.26  Aligned_cols=60  Identities=8%  Similarity=0.098  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRK  349 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  349 (502)
                      +..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.++...+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344444445555555555555444432 33344444444445555555555544444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=5.1e-06  Score=63.48  Aligned_cols=112  Identities=9%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI--AEN----VSFYN  430 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~  430 (502)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+...  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345555566666666666666666665543 23455566666666666666666666666655421  111    55666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740          431 AVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY  471 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  471 (502)
                      .+..++...|++++|.+.|+++.+.  .|+...+..+..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  122 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence            6677777777777777777777664  34555555444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=1.5e-05  Score=62.39  Aligned_cols=98  Identities=15%  Similarity=-0.068  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHH
Q 010740          143 KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT----PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTY  218 (502)
Q Consensus       143 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  218 (502)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|+..+++..+..  +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence            3445555555555555555555555555543  233    3445555555555555555555555554421  3344455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          219 STLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       219 ~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      ..+..++...|++++|...|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            55555555555555555555555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=8.2e-06  Score=63.07  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      .+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..+++..+..  +.+...+..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   83 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   83 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence            345566666666666666666666666666553 3445666666666666666666666666665532  3455566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 010740          222 IKACVDAMRFELIETLYQDMDE  243 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~  243 (502)
                      ..++...|++++|...|++..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            6666666666666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.38  E-value=2.2e-06  Score=68.39  Aligned_cols=135  Identities=13%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC-CChH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQ----IA-ENVS  427 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~  427 (502)
                      ++..+...+...|++++|...+++..+... ..+    ..++..+...+...|++++|.+.++...+..    .+ ....
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            445555555666666666666655543210 011    1356666677777777777777777655431    00 1144


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEK----HCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      ++..+...+...|++++|.+.+++..+.    +..+ ....+..+...|...|++++|.+.++++++...
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5677778888888888888888877643    1111 134677788888899999999999999887643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.37  E-value=9.6e-06  Score=61.92  Aligned_cols=93  Identities=10%  Similarity=-0.024  Sum_probs=56.9

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hHHHHHHHH
Q 010740          361 NVIEAFSDMGDAKHMEYTFEQMHAEGMKADT---KTFCCLINGYANAGLFHKVISSVRLASKLQIAEN---VSFYNAVIS  434 (502)
Q Consensus       361 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~  434 (502)
                      .+...+...|++++|...|+++.+.... +.   ..+..+..++...|++++|...++.+.+.. +.+   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            4455566667777777777776654211 12   355566666667777777777776666643 223   445566666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC
Q 010740          435 ACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       435 ~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ++...|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666677777777777666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.36  E-value=5.3e-06  Score=66.47  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAE-------GM----------KADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      ...+......+.+.|++++|+..|.+.+..       +-          +.+...|..+..+|...|++++|+..++.++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666677777777777777777776653       00          0112345555556666666666666666665


Q ss_pred             hcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          419 KLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       419 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +.. +.+...|..+..+|...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            543 444555566666666666666666666665553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=5.1e-06  Score=62.77  Aligned_cols=91  Identities=13%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ...+.+.|++++|+..|+.+.+..  +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            345566788888888888877753  5567788888888888888888888888887764 4467777788888888888


Q ss_pred             HHHHHHHHHHhhcC
Q 010740          195 IDEAFVTLNQMKTL  208 (502)
Q Consensus       195 ~~~a~~~~~~~~~~  208 (502)
                      +++|+..|++..+.
T Consensus       101 ~~~A~~~~~~al~~  114 (121)
T 1hxi_A          101 ANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888887754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.33  E-value=9.8e-07  Score=66.36  Aligned_cols=87  Identities=10%  Similarity=0.068  Sum_probs=59.4

Q ss_pred             hcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 010740          368 DMGDAKHMEYTFEQMHAEGM--KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEM  445 (502)
Q Consensus       368 ~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  445 (502)
                      ..|++++|+..|++..+.+.  +-+...+..+..+|...|++++|+..++.+.+.. +.+..++..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            35777888888888776531  1233566777777788888888888888777764 45567777777788888888888


Q ss_pred             HHHHHHHHHC
Q 010740          446 ERVYKRMKEK  455 (502)
Q Consensus       446 ~~~~~~~~~~  455 (502)
                      +..|++....
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888777765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.32  E-value=8.9e-06  Score=77.76  Aligned_cols=116  Identities=10%  Similarity=-0.017  Sum_probs=51.7

Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVI  411 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  411 (502)
                      .+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|++++|.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3344455555555544444322 34445555555555555555555555554432 123344455555555555555555


Q ss_pred             HHHHHHHhcCCCCChHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010740          412 SSVRLASKLQIAENVSFYNAVISA--CIKADDLMEMERVYK  450 (502)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  450 (502)
                      +.++++.+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555554432 2223333333333  444555555555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.31  E-value=8.8e-06  Score=62.11  Aligned_cols=27  Identities=11%  Similarity=0.122  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      .+..+..++...|++++|.+.|++..+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            333344444444444444444444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.28  E-value=1.1e-05  Score=76.73  Aligned_cols=124  Identities=9%  Similarity=-0.046  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740          321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT--------------SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG  386 (502)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  386 (502)
                      ...+..+...|.+.|++++|...|.+..+......              ...|..+..+|.+.|++++|+..+++.++..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45666777777778888888888877776543311              4566666666666666666666666666543


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740          387 MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       387 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  446 (502)
                       +.+...|..+..+|...|++++|...|+.+.+.. +.+...+..+..++.+.++.+++.
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             2245566666666666666666666666666543 334455566666666666655554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.27  E-value=1.5e-06  Score=83.11  Aligned_cols=121  Identities=10%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC
Q 010740          362 VIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD  441 (502)
Q Consensus       362 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  441 (502)
                      +...+.+.|++++|.+.|++..+.. +-+...+..+..+|...|++++|++.++++.+.. +.+...|..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            3445668899999999999999863 3357899999999999999999999999999874 5678889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcHHHHHHHH
Q 010740          442 LMEMERVYKRMKEKHCRPDSETFSIMTEA--YAKEGMNDKVYALEQ  485 (502)
Q Consensus       442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~  485 (502)
                      +++|++.|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999986432 34456556555  888999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.27  E-value=5.2e-05  Score=73.87  Aligned_cols=160  Identities=8%  Similarity=-0.026  Sum_probs=124.5

Q ss_pred             cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010740          336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGD----------AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG  405 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  405 (502)
                      ..++|++.++.+...+.. +...|+.-..++...|+          ++++++.++.+.+.. +-+..+|..-..++.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            346677888888777665 66777777666666666          788888888888764 336677888777888888


Q ss_pred             --ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 010740          406 --LFHKVISSVRLASKLQIAENVSFYNAVISACIKAD-DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKE--------  474 (502)
Q Consensus       406 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------  474 (502)
                        +++++++.++.+.+.. +-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              6689999998888875 567888888888888888 888999999998887654 788888877777663        


Q ss_pred             ------CCcHHHHHHHHHHHHhhhhcccccc
Q 010740          475 ------GMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       475 ------g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                            +.++++++++++++...|.+...|.
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~  230 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWF  230 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence                  5578999999999999888877663

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.25  E-value=9.8e-06  Score=64.52  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCChH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGM-KAD----TKTFCCLINGYANAGLFHKVISSVRLASKL----QI-AENVS  427 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~  427 (502)
                      .+..+...+...|++++|.+.+++..+... ..+    ...+..+...+...|++++|.+.++...+.    +. .....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            344445555555555555555555433210 011    234555666667777777777776665543    11 11134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      ++..+...+...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            566777778888888888888877664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.24  E-value=4.1e-05  Score=58.30  Aligned_cols=92  Identities=18%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKE---GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPT---PELYTALLA  187 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~  187 (502)
                      ....+...|++++|+..|+.+.+..  +.+.   ..+..+..++...|++++|...|+++.+.. +.+   ..++..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            3445566778888888887776642  2233   466677777777888888888887777653 223   566777777


Q ss_pred             HHHhCCCHHHHHHHHHHhhcC
Q 010740          188 AYCRNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~  208 (502)
                      ++...|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777778888887777777663

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.23  E-value=4.1e-06  Score=76.23  Aligned_cols=154  Identities=8%  Similarity=0.012  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          321 TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLING  400 (502)
Q Consensus       321 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~  400 (502)
                      ...+..+...+.+.|++++|...|........  +..       .+...++..++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            56677888888899999999999998877532  221       1223333444333221          1367888899


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCcH
Q 010740          401 YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEA-YAKEGMND  478 (502)
Q Consensus       401 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~~  478 (502)
                      |.+.|++++|+..++.+++.. +.+...|..+..+|...|++++|+..|++..+.  .| +...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998874 567888999999999999999999999998875  34 44455555555 34567788


Q ss_pred             HHHHHHHHHHHhhhhccc
Q 010740          479 KVYALEQEKLQMLLEASG  496 (502)
Q Consensus       479 ~A~~~~~~~~~~~~~~~~  496 (502)
                      ++.++|++|++..+.+..
T Consensus       317 ~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHhhCCCCCCCC
Confidence            899999999988776554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.22  E-value=2.4e-05  Score=74.49  Aligned_cols=122  Identities=8%  Similarity=-0.043  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK---------------EGTYMKLLVLLGKSGQPELARKVFNEMVEE  173 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  173 (502)
                      ..+......+...|++++|+..|+.+.+..  +.+               ..+|..+..+|.+.|++++|+..|++.++.
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            344445566677888888888888777642  222               456667777777777777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010740          174 GIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIE  235 (502)
Q Consensus       174 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  235 (502)
                      . +.+...|..+..+|...|++++|+..|++..+..  +.+...+..+..++.+.++++++.
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4456667777777777777777777777776642  344455666666666666665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.21  E-value=1.1e-05  Score=76.67  Aligned_cols=126  Identities=10%  Similarity=-0.037  Sum_probs=62.4

Q ss_pred             HHHhhhcHHHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHH
Q 010740          117 DHVLKKQWFQALQVFEMLKEQ-----PFYQPK-EGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G--IEPTPELYT  183 (502)
Q Consensus       117 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~  183 (502)
                      .+...|++++|+.+++...+.     |...|+ ..+++.|..+|...|++++|..++++.++.     |  .+-...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            344566777777666654321     111222 235666666666666666666666655432     1  111234455


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhhcC-----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740          184 ALLAAYCRNSLIDEAFVTLNQMKTL-----PNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMD  242 (502)
Q Consensus       184 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~  242 (502)
                      .|...|...|++++|+.++++..+.     +.-.|+ ..+.+.+..++...+.+++|+.+|..+.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666555554321     100111 2223344444444555555555555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.17  E-value=2e-06  Score=64.65  Aligned_cols=87  Identities=13%  Similarity=0.013  Sum_probs=57.5

Q ss_pred             hhcHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740          121 KKQWFQALQVFEMLKEQPFY-QPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF  199 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  199 (502)
                      .|++++|+..|+.+.+.+.- +.+...+..+..++...|++++|...|++..+.. +-+..++..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            46777777777777764200 2234467777777777777877877777777664 445677777777777777777777


Q ss_pred             HHHHHhhcC
Q 010740          200 VTLNQMKTL  208 (502)
Q Consensus       200 ~~~~~~~~~  208 (502)
                      ..|++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.17  E-value=0.00015  Score=70.72  Aligned_cols=173  Identities=6%  Similarity=-0.093  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Q 010740          302 VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRM----------YDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG-  370 (502)
Q Consensus       302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  370 (502)
                      .++|++.++++...+ +-+..+|+.--.++...|+          ++++++.++.+.+...+ +..+|+.-..++.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            356667776666644 4445555555555555555          67777777777777665 7777777777777777 


Q ss_pred             -CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc---------
Q 010740          371 -DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG-LFHKVISSVRLASKLQIAENVSFYNAVISACIKA---------  439 (502)
Q Consensus       371 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  439 (502)
                       +++++++.++++.+.+. -+...|+.-..++...| .++++++.++.+.+.. +-|...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence             56777788877777642 35667777666677777 7777777777777654 55677777666666552         


Q ss_pred             -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 010740          440 -----DDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDK  479 (502)
Q Consensus       440 -----g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~  479 (502)
                           +.++++++.++++...... |...|..+...+.+.++.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                 5578899999988876433 77788888888877777544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.16  E-value=2.6e-05  Score=71.76  Aligned_cols=123  Identities=10%  Similarity=0.011  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQP--------------FYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEG  174 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  174 (502)
                      ..+......+.+.|++++|++.|+.+.+.-              ..+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            344455566778899999999998776510              001123345555555555555555555555555443


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010740          175 IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELI  234 (502)
Q Consensus       175 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  234 (502)
                       +.+...|..+..+|...|++++|++.|++..+..  +.+...+..+..++...++.+++
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence             2344555555555555555555555555554431  23444444444444444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.14  E-value=2.9e-05  Score=71.46  Aligned_cols=120  Identities=10%  Similarity=-0.057  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEG---------------IEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLP  209 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  209 (502)
                      ..+..+...+.+.|++++|...|++.++.-               -+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            356677788888889999988888877520               01123444555555555555555555555555431


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          210 NCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       210 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                        +.+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+
T Consensus       304 --p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          304 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             --chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence              334444555555555555555555555554443211 3334444444444333333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.11  E-value=1.2e-05  Score=76.38  Aligned_cols=127  Identities=6%  Similarity=-0.136  Sum_probs=73.2

Q ss_pred             HHhcCCHhHHHHHHHHHHHcC---CC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCCChHHHHH
Q 010740          366 FSDMGDAKHMEYTFEQMHAEG---MK---AD-TKTFCCLINGYANAGLFHKVISSVRLASKL-----Q--IAENVSFYNA  431 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~---~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~  431 (502)
                      +...|++++|+.++++..+..   +.   |+ ..+++.|..+|...|++++|..+++++++.     |  .+....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            445666666666666654321   11   11 235666667777777777777666655432     1  1122445667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          432 VISACIKADDLMEMERVYKRMKEK-----HCR-PD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      |...|...|++++|+.++++..+.     |.. |+ ..+.+.+..++...|.+++|..+++++.+...
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777777665532     221 21 22444555666677777777777777766543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.10  E-value=3.7e-05  Score=61.46  Aligned_cols=99  Identities=12%  Similarity=0.064  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhC--------CC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQ--------PF--------YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVE  172 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  172 (502)
                      ..+......+...|++++|+..|+.....        ..        .+.+...|..+..+|.+.|++++|...+++.++
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            44555666777899999999999887653        00        011234666777777777777777777777776


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740          173 EGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       173 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  208 (502)
                      .. +.+...|..+..+|...|++++|+..|++..+.
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            64 455667777777777777777777777776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.07  E-value=0.00014  Score=56.14  Aligned_cols=111  Identities=10%  Similarity=-0.061  Sum_probs=65.3

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHH
Q 010740          371 DAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEME  446 (502)
Q Consensus       371 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~  446 (502)
                      ++++|.+.|++..+.| .++..    |...|...+.+++|.++|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4555666666665554 22222    4445555555666666666665543   34555556666655    56666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhhh
Q 010740          447 RVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       447 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  492 (502)
                      ++|++..+.|   +...+..|...|..    .++.++|+++++++.+.+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            6666666654   45566666666666    6666677777766666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.04  E-value=2.7e-05  Score=70.85  Aligned_cols=147  Identities=10%  Similarity=0.034  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+......+...|++++|+..|+.+...   .|+...       +...|+.+++...+.          ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            33445556677889999999999987764   333321       111222222221110          1244555555


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCChH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG-YGKAGMFD  267 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~  267 (502)
                      |.+.|++++|+..+++..+..  +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555431  334555555555555555555555555555443211 23333333333 22234445


Q ss_pred             HHHHHHHHHHH
Q 010740          268 QMERVLSGMLE  278 (502)
Q Consensus       268 ~a~~~~~~~~~  278 (502)
                      .+...|..+..
T Consensus       317 ~a~~~~~~~l~  327 (338)
T 2if4_A          317 KQKEMYKGIFK  327 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhC
Confidence            55555555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.01  E-value=4.6e-05  Score=56.76  Aligned_cols=80  Identities=14%  Similarity=0.117  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          374 HMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       374 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      .|+..|++..+.. +.+...+..+...|...|++++|...++.+.+.. +.+...|..+..+|...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4666677666543 2355667777777777777777777777777654 4456667777777777777777777777766


Q ss_pred             HC
Q 010740          454 EK  455 (502)
Q Consensus       454 ~~  455 (502)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.00  E-value=0.00015  Score=56.53  Aligned_cols=96  Identities=11%  Similarity=0.013  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA------D-----TKTFCCLINGYANAGLFHKVISSVRLASKL-------  420 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------  420 (502)
                      +......+.+.|++++|+..|++.++.....      +     ...|..+..++...|++++|+..++..++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444455556666666666666665532110      1     227777777888888888888888777775       


Q ss_pred             CCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          421 QIAENVSFY----NAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       421 ~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      . +.+...|    .....++...|++++|+..|++..+.
T Consensus        94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3 3345667    77888888888888888888888753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.98  E-value=0.00041  Score=53.49  Aligned_cols=113  Identities=12%  Similarity=-0.057  Sum_probs=85.5

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR----NSLID  196 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  196 (502)
                      .+++++|++.|+...+.+  .++.  .  |...|...+.+++|.+.|++..+.|   +...+..|...|..    .++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence            467888888888888876  3333  3  7777777778888888888888764   56777778888877    77888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERSV  246 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~  246 (502)
                      +|+++|++..+.    -+...+..|...|..    .+++++|.+.|++..+.|.
T Consensus        79 ~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           79 KAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            888888888764    456677777777777    7788888888888777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.90  E-value=1.9e-05  Score=58.34  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 010740          390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD-------SE  462 (502)
Q Consensus       390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~-------~~  462 (502)
                      +...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|++.+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            34556667777777888888888887777764 4566777778888888888888888888887653  33       45


Q ss_pred             HHHHHHHHHHhcCCcHHHHHHHHH
Q 010740          463 TFSIMTEAYAKEGMNDKVYALEQE  486 (502)
Q Consensus       463 ~~~~l~~~~~~~g~~~~A~~~~~~  486 (502)
                      .+..+..++...|+.+.|++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHH
Confidence            566666666666666666554443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.85  E-value=0.00011  Score=54.70  Aligned_cols=79  Identities=9%  Similarity=-0.110  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740          126 QALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM  205 (502)
Q Consensus       126 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  205 (502)
                      +|+..|+.+.+..  +.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566677766653  5567778888888888888888888888887764 455677778888888888888888888777


Q ss_pred             hc
Q 010740          206 KT  207 (502)
Q Consensus       206 ~~  207 (502)
                      .+
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.84  E-value=9.3e-05  Score=53.45  Aligned_cols=64  Identities=13%  Similarity=0.030  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          390 DTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       390 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      +...+..+..+|...|++++|+..++.+.+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44556666666666666666666666666653 33455566666666666666666666666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.83  E-value=2.3e-05  Score=57.87  Aligned_cols=63  Identities=14%  Similarity=0.017  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  207 (502)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3445555555556666666666666555543 33455555555666666666666666665554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.80  E-value=3.6e-05  Score=59.90  Aligned_cols=110  Identities=10%  Similarity=0.073  Sum_probs=76.0

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          366 FSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF----------HKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ..+.+.+++|.+.++...+.. +-+...|..+..++...+++          ++|+..|+++++.. +.+...|..+..+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            345567788888888888764 33667777788888777664          48888888877764 4466777788888


Q ss_pred             HHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          436 CIKAD-----------DLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       436 ~~~~g-----------~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      |...|           ++++|++.|++..+.  .|+..             .+.+++++.+++.+..+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~-------------~y~~al~~~~ka~el~~  142 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT-------------HYLKSLEMTAKAPQLHA  142 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHTHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHhCHhccC
Confidence            87664           788888888887774  45432             33566666666666544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.78  E-value=8.6e-05  Score=57.76  Aligned_cols=99  Identities=18%  Similarity=-0.003  Sum_probs=74.9

Q ss_pred             HhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          119 VLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQP----------ELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       119 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .+.+++++|++.++...+..  +.+...|..+..++...+++          ++|+..|++.++.. +.+..+|..+..+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            35678999999999888874  66888999888888888765          58888888888875 4567788888888


Q ss_pred             HHhCC-----------CHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          189 YCRNS-----------LIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       189 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      |...|           ++++|++.|++..+.   .|+...|...+.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~  132 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            88764           788888888887764   455555444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.76  E-value=0.00045  Score=48.45  Aligned_cols=81  Identities=21%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY  471 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  471 (502)
                      ..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+... -+...+..+..++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            345555666666666666666666666543 34455666666666667777777777766665432 2455555555555


Q ss_pred             Hhc
Q 010740          472 AKE  474 (502)
Q Consensus       472 ~~~  474 (502)
                      .+.
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.71  E-value=0.00046  Score=48.40  Aligned_cols=79  Identities=19%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010740          145 GTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKA  224 (502)
Q Consensus       145 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~  224 (502)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+..  +.+...+..+..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence            345555555555566666666665555543 3345555555555555666666666655555431  3344444444444


Q ss_pred             HH
Q 010740          225 CV  226 (502)
Q Consensus       225 ~~  226 (502)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.63  E-value=0.00017  Score=51.98  Aligned_cols=65  Identities=25%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhc
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKT  207 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  207 (502)
                      -+...+..+..++...|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            355667777777777777777777777777664 34556677777777777777777777776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.42  E-value=0.00049  Score=64.23  Aligned_cols=88  Identities=5%  Similarity=0.066  Sum_probs=54.6

Q ss_pred             cCChHHHHHHHHHHHhc---CCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHH
Q 010740          404 AGLFHKVISSVRLASKL---QIAE----NVSFYNAVISACIKADDLMEMERVYKRMKEK-----HC-RPD-SETFSIMTE  469 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~p~-~~~~~~l~~  469 (502)
                      .|++++|+.++++.++.   -+.+    ...+++.|..+|...|++++|+.++++..+.     |. .|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666655442   1111    2455667777777777777777777766532     21 222 335677777


Q ss_pred             HHHhcCCcHHHHHHHHHHHHhh
Q 010740          470 AYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      .|...|++++|..+++++++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHH
Confidence            7777777777777777777764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.35  E-value=0.0014  Score=61.23  Aligned_cols=26  Identities=8%  Similarity=-0.102  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740          217 TYSTLIKACVDAMRFELIETLYQDMD  242 (502)
Q Consensus       217 ~~~~ll~~~~~~~~~~~a~~~~~~~~  242 (502)
                      +++.|...|...|++++|+.++++..
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            35555555555555555555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.33  E-value=0.0014  Score=61.19  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=50.4

Q ss_pred             HHHhcCChHHHHHHHHHHHhcC---CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 010740          400 GYANAGLFHKVISSVRLASKLQ---IAE----NVSFYNAVISACIKADDLMEMERVYKRMKEK-----HC-RPD-SETFS  465 (502)
Q Consensus       400 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~p~-~~~~~  465 (502)
                      .+...|++++|+.++++.++..   +.+    ...+++.|..+|...|++++|+.+++++.+.     |. .|+ ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3445566666666666555431   111    2345566666666666666666666655432     11 122 23556


Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHh
Q 010740          466 IMTEAYAKEGMNDKVYALEQEKLQM  490 (502)
Q Consensus       466 ~l~~~~~~~g~~~~A~~~~~~~~~~  490 (502)
                      .|...|...|++++|..+++++++.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            6666666666666666666666665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.30  E-value=0.00093  Score=47.77  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAENVS-FYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEG  475 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g  475 (502)
                      ....+...|++++|...++.+.+.. +.+.. .+..+..+|...|++++|++.|++..+.... +...+..        +
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~--------~   75 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------H
Confidence            3445666777777777777776653 34455 6777777777777777777777777765322 2222211        4


Q ss_pred             CcHHHHHHHHHHHHhhhh
Q 010740          476 MNDKVYALEQEKLQMLLE  493 (502)
Q Consensus       476 ~~~~A~~~~~~~~~~~~~  493 (502)
                      .+.++...+++.....|.
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            555566666655554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.26  E-value=0.0087  Score=61.53  Aligned_cols=153  Identities=10%  Similarity=-0.006  Sum_probs=89.0

Q ss_pred             hccCChHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHH
Q 010740          261 GKAGMFDQMER-VLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       261 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  339 (502)
                      ...+++++|.+ ++..+       ++......++..+.+.|.+++|+++.+.-.            .-.......|+++.
T Consensus       610 ~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred             HHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence            34666777665 44211       112223556666677777777776552111            11223445678888


Q ss_pred             HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          340 MSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      |.++.+.+      .+...|..+...+.+.++++.|.++|.++..         |..+...+...|+.+...++.+.+..
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            77775432      2667888888888888888888888887653         33445555556666666555555554


Q ss_pred             cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          420 LQIAENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       420 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      .|      -++....+|.+.|++++|++++.++.
T Consensus       736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            43      13334445556666666666665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.25  E-value=0.0011  Score=46.81  Aligned_cols=66  Identities=8%  Similarity=-0.016  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          389 ADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       389 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .+...+..+..++...++   .++|..++++.++.. +.+......+...+.+.|++++|+..|+++.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455566666666654443   567777777776654 555666666667777777777777777777665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.25  E-value=0.0015  Score=61.01  Aligned_cols=90  Identities=10%  Similarity=-0.067  Sum_probs=39.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHH
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQP--FYQPK----EGTYMKLLVLLGKSGQPELARKVFNEMVEE-----G--IEPTPEL  181 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~  181 (502)
                      +..+...|++++|+.+++...+..  .+.|+    ..+++.|..+|...|++++|..++++.++.     |  .+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334444555555555555544321  01111    224455555555555555555555544321     1  0011233


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHH
Q 010740          182 YTALLAAYCRNSLIDEAFVTLNQ  204 (502)
Q Consensus       182 ~~~l~~~~~~~g~~~~a~~~~~~  204 (502)
                      ++.|...|...|++++|+.++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Confidence            44444444455554444444444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.20  E-value=0.011  Score=53.06  Aligned_cols=49  Identities=8%  Similarity=0.011  Sum_probs=31.1

Q ss_pred             CCCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          141 QPKEGTYMKLLVLLG--KSG---QPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +.+..+|...+++..  ..+   +..+|..+|++.++.. +-....|..+..+|.
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~  244 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDI  244 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            556667777765543  333   3578999999999874 333556665555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.17  E-value=0.014  Score=52.40  Aligned_cols=73  Identities=11%  Similarity=-0.002  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010740          388 KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETF  464 (502)
Q Consensus       388 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~  464 (502)
                      ..+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|++....  .|...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            3455555555555555566666666666666654  45555555566666666666666666666653  3444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.15  E-value=0.0014  Score=46.79  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=56.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          432 VISACIKADDLMEMERVYKRMKEKHCRPDSE-TFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      ....+...|++++|++.|+++.+... .+.. .|..+..+|...|++++|++.|+++++..|.....|
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            45678889999999999999998643 2667 899999999999999999999999999988776544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.98  E-value=0.11  Score=53.15  Aligned_cols=28  Identities=4%  Similarity=-0.122  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          249 NTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +...|..+...+.+.|+++.|++.|.++
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3344555555555555555555554444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.98  E-value=0.0035  Score=48.15  Aligned_cols=81  Identities=9%  Similarity=0.005  Sum_probs=44.5

Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHH
Q 010740          372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAG---LFHKVISSVRLASKLQIAE--NVSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~  446 (502)
                      ...+.+-|.+..+.|. ++..+...+..++++.+   ++++++.+++...+.. .|  +...+-.|.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3445555555554443 45555555566666655   4446666666655543 22  2344444555566666666666


Q ss_pred             HHHHHHHH
Q 010740          447 RVYKRMKE  454 (502)
Q Consensus       447 ~~~~~~~~  454 (502)
                      ++++.+.+
T Consensus        92 ~y~~~lL~   99 (152)
T 1pc2_A           92 KYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.85  E-value=0.0079  Score=43.41  Aligned_cols=67  Identities=13%  Similarity=-0.000  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQ------IAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .+..-+..+...+...|+++.|..+++.+.+..      -.....++..|..++.+.|++++|..+++++.+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            345556678888888888888888888776641      1235667788888888888888888888888774

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.85  E-value=0.076  Score=39.24  Aligned_cols=60  Identities=15%  Similarity=-0.010  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH  456 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g  456 (502)
                      ..+..+...|.-++-.+++..+... .+|++...-.+..+|.+-|+..+|.+++.++-+.|
T Consensus        96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3333444444444444444443221 23344444444444444444444444444444444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.78  E-value=0.037  Score=38.75  Aligned_cols=67  Identities=6%  Similarity=-0.096  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcC
Q 010740          141 QPKEGTYMKLLVLLGKSGQ---PELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       141 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  208 (502)
                      +.+...+..+..++...++   .++|..+|++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566677777777754444   678888888888775 556777777778888888888888888888765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.13  Score=40.58  Aligned_cols=128  Identities=14%  Similarity=0.114  Sum_probs=83.5

Q ss_pred             HHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 010740          330 AYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK  409 (502)
Q Consensus       330 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  409 (502)
                      .....|+++.|.++.+.+      -+...|..|.......|+++-|.++|.+...         |..+.-.|...|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345668888888887665      2677888888888888888888888887653         4455556666787777


Q ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          410 VISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       410 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      -.++-+.....|      -++.-...+.-.|+++++.++|.+.-.   .|-..      ......|-.+.|.++.+++
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            776666655544      145555666678888888888755432   11111      1122356666677776654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.3  Score=38.53  Aligned_cols=103  Identities=8%  Similarity=-0.036  Sum_probs=59.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCH
Q 010740          152 VLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRF  231 (502)
Q Consensus       152 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  231 (502)
                      ......|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+...          +..+.-.|.-.|+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence            3445566677666666554      3466677777777777777777777766543          44455555556666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          232 ELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       232 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +...++-+.....|-      ++.....+.-.|+++++.++|.+.
T Consensus        77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            665555444444431      233344455566666666666543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.20  E-value=0.064  Score=38.48  Aligned_cols=63  Identities=14%  Similarity=0.018  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          288 TMNTILSVFANKGQVDMMERWYEKFRNFG------IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       288 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      .+..+...+.+.|+++.|..+|++..+.-      -......+..|..+|.+.|+++.|..+++++.+.
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            33444444445555555555554443310      0122334444555555555555555555554443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.07  E-value=2e-05  Score=71.95  Aligned_cols=174  Identities=13%  Similarity=0.203  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      ..+..++....+.|.+++-+..+...++..   -+...=+.|+-+|++.+++.+..+.+.       .||..-...+.+-
T Consensus        84 s~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr  153 (624)
T 3lvg_A           84 SSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR  153 (624)
T ss_dssp             CSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence            344456666667777877777777766542   233445677777888777655333321       3555555666777


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPN-------------------CQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPN  249 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  249 (502)
                      |...|.++.|.-+|..+.....                   -.-++.||..+-.+|...+.+..|.-.--.++-..    
T Consensus       154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha----  229 (624)
T 3lvg_A          154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----  229 (624)
T ss_dssp             HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----
T ss_pred             HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----
Confidence            7777777777766665533210                   01234456666666666666555544333322110    


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740          250 TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (502)
                       .-...++..|-..|.+++-+.+++.-+.-  -......|+-|.-.|++-
T Consensus       230 -deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY  276 (624)
T 3lvg_A          230 -DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF  276 (624)
T ss_dssp             -SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc
Confidence             11223445566666666666666655421  134555566655555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.04  E-value=0.024  Score=42.92  Aligned_cols=102  Identities=5%  Similarity=0.019  Sum_probs=52.8

Q ss_pred             ChHHHHHHHHHHHhcCCH------hHHHHHHHHHHHcCCCCCHH----HHHHHHHHH---HhcCChHHHHHHHHHHHhcC
Q 010740          355 TSSTYNNVIEAFSDMGDA------KHMEYTFEQMHAEGMKADTK----TFCCLINGY---ANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       355 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~  421 (502)
                      |..+|-..+....+.|+.      ++..++|++.... ++|+..    .|..+---|   ...+++++|.++|+.+.+..
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            556666666666666666      6666666666553 334321    122121111   13355566666666554442


Q ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010740          422 IAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCR  458 (502)
Q Consensus       422 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~  458 (502)
                      -.- ..+|-.....-.++|+++.|.+++.+....+.+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            122 455555555555566666666666666655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.99  E-value=0.11  Score=39.91  Aligned_cols=83  Identities=13%  Similarity=0.033  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHH
Q 010740          336 MYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMG---DAKHMEYTFEQMHAEGMKA--DTKTFCCLINGYANAGLFHKV  410 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a  410 (502)
                      ....+.+-|.+..+.+. ++..+...+..++++.+   +.++++.+|++..+.+ .|  ....+..|.-+|.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            34555666666555544 36666666777777766   5557777777776653 23  244556666677777777777


Q ss_pred             HHHHHHHHhc
Q 010740          411 ISSVRLASKL  420 (502)
Q Consensus       411 ~~~~~~~~~~  420 (502)
                      .++++.+++.
T Consensus        91 ~~y~~~lL~i  100 (152)
T 1pc2_A           91 LKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            7777777764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.86  E-value=0.063  Score=46.13  Aligned_cols=108  Identities=12%  Similarity=0.091  Sum_probs=72.9

Q ss_pred             HhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHc-CCH
Q 010740          372 AKHMEYTFEQMHAEGMKAD---TKTFCCLINGYANA-----GLFHKVISSVRLASKLQIAENVSFYNAVISACIKA-DDL  442 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~  442 (502)
                      ...|...+++.++.  .|+   ...|..+...|...     |+.++|.+.|++.++.+-.-+..++....+.++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777777774  555   45777788888774     88888888888888864222467777777777774 888


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          443 MEMERVYKRMKEKHCR--PDSETFSIMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       443 ~~a~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      +++.+.+++.......  |+....+.+        .-.+|..+++++-.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d  297 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD  297 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence            8888888888887655  554444333        22355566655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.84  E-value=0.052  Score=40.02  Aligned_cols=82  Identities=9%  Similarity=-0.013  Sum_probs=33.4

Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcCCC-CChHHHHHHHHHHHHcCCHHHHHH
Q 010740          372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHK---VISSVRLASKLQIA-ENVSFYNAVISACIKADDLMEMER  447 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~  447 (502)
                      ...+.+-|......|. ++..+-..+..++.+..+...   ++.+++...+.+.+ -.....-.|.-++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3334444444433332 344444444444444443333   44444444433201 122223334444444555555555


Q ss_pred             HHHHHHH
Q 010740          448 VYKRMKE  454 (502)
Q Consensus       448 ~~~~~~~  454 (502)
                      .++.+.+
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.65  E-value=0.15  Score=43.88  Aligned_cols=110  Identities=7%  Similarity=0.056  Sum_probs=79.0

Q ss_pred             cHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChH
Q 010740          336 MYDKMSSVMEYMRKLQFPW-TSSTYNNVIEAFSDM-----GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANA-GLFH  408 (502)
Q Consensus       336 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~  408 (502)
                      ....|...+++..+....- +-..|..+...|.+.     |+.++|.+.|++.++....-+..++......++.. |+.+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            4567778888888764331 255888888888884     99999999999999864322367777788888874 9999


Q ss_pred             HHHHHHHHHHhcCCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010740          409 KVISSVRLASKLQIA--ENVSFYNAVISACIKADDLMEMERVYKRMK  453 (502)
Q Consensus       409 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  453 (502)
                      ++.+.+++.+.....  |+....+.+        .-++|..+++++.
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~  296 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence            999999999987655  555544433        3355666665544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.51  E-value=1.6  Score=44.50  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=48.3

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH
Q 010740          297 ANKGQVDMMERWYEKFRNFGIDPETRTFN--ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  374 (502)
                      ...|+.+.+..+.+.+.... .|....-.  .+.-+|+..|+.....+++..+...... ++.-...+.-++...|+.+.
T Consensus       535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d-~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSND-DVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTSSSCSS
T ss_pred             hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhccCCHHH
Confidence            34555555555555554421 12221111  2223444555555555555555543211 22222223333334455455


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 010740          375 MEYTFEQMHAEGMKADTKTFCCLINGYANAGLF-HKVISSVRLAS  418 (502)
Q Consensus       375 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~  418 (502)
                      +.++++.+.+.+ .|....-..+..+....|+. .++.+.+..+.
T Consensus       613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            555555444432 23322222223333333332 34555555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.92  E-value=0.34  Score=36.73  Aligned_cols=52  Identities=12%  Similarity=-0.008  Sum_probs=34.9

Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 010740          370 GDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQI  422 (502)
Q Consensus       370 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  422 (502)
                      ++.++|.++|+.++..+-+. ...|.....--.++|+++.|.+++......+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            67777777777776543333 55565556666677888888888877777653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.61  E-value=0.98  Score=33.53  Aligned_cols=138  Identities=7%  Similarity=-0.029  Sum_probs=88.9

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  197 (502)
                      +...|..++..++........    +..-||.+|--....-+-+...++++..-+.   -|          ...+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHH
Confidence            455788999999998877643    5667888777777777766666666665432   11          123455555


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010740          198 AFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      .+..+-.+-      .+...+...++.+...|+-++-.+++..+... .+|+......+..+|.+.|+..+|.+++.+..
T Consensus        80 Vi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC  152 (172)
T 1wy6_A           80 VVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC  152 (172)
T ss_dssp             HHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            555554442      23344556666777777777777777775432 35567777777777777777777777777775


Q ss_pred             Hc
Q 010740          278 ES  279 (502)
Q Consensus       278 ~~  279 (502)
                      ++
T Consensus       153 ~k  154 (172)
T 1wy6_A          153 KK  154 (172)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.56  E-value=0.53  Score=36.45  Aligned_cols=63  Identities=10%  Similarity=-0.040  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010740          110 TVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPK-------EGTYMKLLVLLGKSGQPELARKVFNEMVE  172 (502)
Q Consensus       110 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  172 (502)
                      .+..-++.+...|.|+.|+-+.+.+.......|+       ..++..+.+++...|++..|...|++.++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3555667777889999999888875433212333       13667788999999999999999999754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.26  E-value=2.9  Score=44.51  Aligned_cols=147  Identities=5%  Similarity=-0.061  Sum_probs=91.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------------
Q 010740          184 ALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSV-----------------  246 (502)
Q Consensus       184 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----------------  246 (502)
                      .++..+...+.++-+.++...+.      .+....-.+..++...|++++|.+.|.+... |+                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            45555666666666666554432      2333334455666777777777777765421 11                 


Q ss_pred             ------CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010740          247 ------TPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD---VWTMNTILSVFANKGQVDMMERWYEKFRNFGI  317 (502)
Q Consensus       247 ------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  317 (502)
                            ..-..-|..++..+-+.+.++.+.++-...++..+...+   ...|..+.+.+...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                  111234677888888888888888888877765432221   12577888888899999998888877765433


Q ss_pred             CCCHHHHHHHHHHHHccCcHHH
Q 010740          318 DPETRTFNILIGAYGKKRMYDK  339 (502)
Q Consensus       318 ~~~~~~~~~l~~~~~~~g~~~~  339 (502)
                        -...+..|+..++..|..+.
T Consensus       970 --r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHCCHHH
T ss_pred             --HHHHHHHHHHHHHhCCChhh
Confidence              24456666666666554433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.24  E-value=0.52  Score=34.72  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHH
Q 010740          123 QWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPEL---ARKVFNEMVEEGIEP--TPELYTALLAAYCRNSLIDE  197 (502)
Q Consensus       123 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~  197 (502)
                      ....+.+-|......+  .++..+-..+..++.+..+...   +..+++.+.+.+ .|  .....-.|.-++.+.|++++
T Consensus        16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            3344444454444444  3666666677777777666554   667777766553 12  22333445566777777777


Q ss_pred             HHHHHHHhhcC
Q 010740          198 AFVTLNQMKTL  208 (502)
Q Consensus       198 a~~~~~~~~~~  208 (502)
                      |.+.++.+.+.
T Consensus        93 A~~~~~~lL~~  103 (126)
T 1nzn_A           93 ALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777777664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.07  E-value=0.67  Score=42.52  Aligned_cols=58  Identities=14%  Similarity=0.092  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQM  205 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  205 (502)
                      ...++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444555555555555555555554442 345555555555555555555555555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.07  E-value=3.8  Score=38.23  Aligned_cols=192  Identities=6%  Similarity=0.030  Sum_probs=99.6

Q ss_pred             hhcHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hC
Q 010740          121 KKQWFQALQVFEMLKE----QPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC----RN  192 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  192 (502)
                      .|++++|++.+-.+.+    .++...+......++..|...|+++...+.+..+.+.. .-.......++..+.    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcC
Confidence            5889999988766543    22234456678889999999999998888777665432 112233333443332    12


Q ss_pred             CC--HHHHHHHHHHhhcC--CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 010740          193 SL--IDEAFVTLNQMKTL--PNCQP---DVYTYSTLIKACVDAMRFELIETLYQDMDER--SVTPN---TVTQNIVLGGY  260 (502)
Q Consensus       193 g~--~~~a~~~~~~~~~~--~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~l~~~~  260 (502)
                      ..  .+.-..+.+.+...  +.+-.   .......|...+...|++.+|..++..+...  |....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            22  11222222222211  10111   1223345566666677777777777666532  21111   23445556666


Q ss_pred             hccCChHHHHHHHHHHHH---cCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010740          261 GKAGMFDQMERVLSGMLE---SATCKPD--VWTMNTILSVFANKGQVDMMERWYEKFR  313 (502)
Q Consensus       261 ~~~g~~~~a~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  313 (502)
                      ...+++..|..++..+..   .....|+  ...+..++..+...+++.+|.+.|.++.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            666666666666665421   1111111  1234445555556666666666555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.96  E-value=1.1  Score=44.70  Aligned_cols=54  Identities=11%  Similarity=-0.031  Sum_probs=38.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 010740          433 ISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGMNDKVYALEQEKL  488 (502)
Q Consensus       433 ~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  488 (502)
                      .+.|...|+++-|+++.++....  .| +-.+|..|..+|...|+++.|+-.++-+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            44456677777777777777764  33 46677777778888888887777777664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.67  E-value=7.1  Score=39.93  Aligned_cols=257  Identities=9%  Similarity=0.007  Sum_probs=124.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC-----CCHHHHHHHHHHH
Q 010740          225 CVDAMRFELIETLYQDMDERSVTPNT--VTQNIVLGGYGKAGMFDQMERVLSGMLESAT-CK-----PDVWTMNTILSVF  296 (502)
Q Consensus       225 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~~l~~~~  296 (502)
                      ....|+.+++..+++.....+-..+.  ..-..+.-+....|..+++..++...+.... +.     +....-..+.-+.
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            44455556666665554432111122  2223333344555655667777776655321 00     1111122222222


Q ss_pred             HhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCC
Q 010740          297 ANKGQ-VDMMERWYEKFRNFGIDPETR--TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVI--EAFSDMGD  371 (502)
Q Consensus       297 ~~~g~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~  371 (502)
                      .-.|. -+++.+.+..+....- ....  .-..|...+...|+-+....++..+.+..   +......+.  -++...|+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            22332 2455555555554221 1111  11233344556677777777777766542   223333333  34446788


Q ss_pred             HhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 010740          372 AKHMEYTFEQMHAEGMKADTKT--FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVY  449 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  449 (502)
                      .+.+..+.+.+.... .|....  ...+.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            888888888777631 222221  1234456667788766666777776532 233333333333444556666666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHH
Q 010740          450 KRMKEKHCRPDSETFSIMTEAYAKEGMN-DKVYALEQEKL  488 (502)
Q Consensus       450 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~  488 (502)
                      +.+.+.+ .|.+..-..+.-+....|.. .+|+..+..+.
T Consensus       618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            6555542 23333333344444444443 45666666654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.43  E-value=1.5  Score=40.09  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010740          394 FCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFSIMT  468 (502)
Q Consensus       394 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~~l~  468 (502)
                      ...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+     .|+.|...+-...-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~  252 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  252 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            3445666677788888877777766653 56777788888888888888888888877653     37888777655444


Q ss_pred             HHH
Q 010740          469 EAY  471 (502)
Q Consensus       469 ~~~  471 (502)
                      ..+
T Consensus       253 ~il  255 (388)
T 2ff4_A          253 RIL  255 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.38  E-value=0.6  Score=46.48  Aligned_cols=52  Identities=12%  Similarity=0.143  Sum_probs=31.6

Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010740          400 GYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRM  452 (502)
Q Consensus       400 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  452 (502)
                      -|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++-+
T Consensus       346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445566666666666665542 445666666666666666666666665544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.32  E-value=3.2  Score=44.23  Aligned_cols=131  Identities=10%  Similarity=0.028  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010740          358 TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADT----KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVI  433 (502)
Q Consensus       358 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  433 (502)
                      -|..++..+.+.+.++.+.++-+..++....-+.    ..|..+.+.+...|++++|...+-.+.....  -......|+
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence            3555666666666666666665555543211111    1455566666666666666666655544322  234455555


Q ss_pred             HHHHHcCCHHH------------HHHHHHH-HHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHH-HHHHHHHh
Q 010740          434 SACIKADDLME------------MERVYKR-MKEK-HCRPDSETFSIMTEAYAKEGMNDKVYA-LEQEKLQM  490 (502)
Q Consensus       434 ~~~~~~g~~~~------------a~~~~~~-~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~  490 (502)
                      ..++..|..+.            ..+++.. ++.. .+...+.-|..|-..+...|++.+|.+ +|+.+.+.
T Consensus       979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            55555444333            3333322 1111 111122335555555566666655443 44444443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.26  E-value=3.7e-06  Score=76.52  Aligned_cols=222  Identities=16%  Similarity=0.223  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010740          179 PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLG  258 (502)
Q Consensus       179 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~  258 (502)
                      +.+|..|..+..+.++..+|++.|-+.       -|+..|..++.++.+.|.+++-.+.+...++..-.  ...=+.|+-
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~  124 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIF  124 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHH
Confidence            345555666666666666655544221       22233555666666666666666666555544222  223345666


Q ss_pred             HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHH
Q 010740          259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYD  338 (502)
Q Consensus       259 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  338 (502)
                      +|++.++..+.++++.        .|+..-...+..-|...|.++.|.-+|..+-.         |..|..++.+.|++.
T Consensus       125 ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq  187 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ  187 (624)
T ss_dssp             HHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred             HHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence            6666666554333221        24444455555666666666666555543221         223333444555555


Q ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010740          339 KMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAS  418 (502)
Q Consensus       339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  418 (502)
                      .|.+.-.   +   .-++.||..+-.+|...+.+.-|.-+--.++-   .||  -...++..|-..|.+++.+.+++...
T Consensus       188 ~AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl  256 (624)
T 3lvg_A          188 AAVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL  256 (624)
T ss_dssp             SSTTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred             HHHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            4443211   1   11445555555555555555444333222221   111  11224444555555555555555444


Q ss_pred             hcCCCCChHHHHHHHHHHHH
Q 010740          419 KLQIAENVSFYNAVISACIK  438 (502)
Q Consensus       419 ~~~~~~~~~~~~~l~~~~~~  438 (502)
                      ... +....+|+.|.-.|++
T Consensus       257 glE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          257 GLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             TST-TCCHHHHHHHHHHHHS
T ss_pred             CCC-chhHHHHHHHHHHHHh
Confidence            322 3344555555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.05  E-value=1.5  Score=32.48  Aligned_cols=67  Identities=10%  Similarity=-0.015  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          388 KADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       388 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4555555455555555544   335566666555544112344445555666666666666666666665

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.68  E-value=3.3  Score=31.12  Aligned_cols=68  Identities=10%  Similarity=-0.012  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          388 KADTKTFCCLINGYANAGL---FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       388 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4555555555666666554   3456666666655432223344445566667777777777777777663

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.56  E-value=2.4  Score=29.50  Aligned_cols=48  Identities=6%  Similarity=0.104  Sum_probs=25.3

Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      .-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++.
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555555555554443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.29  E-value=1.9  Score=29.99  Aligned_cols=63  Identities=25%  Similarity=0.270  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      +.=+.++-++.+....+.|++.+..+.+++|.+.+++..|+++|+-++..  +.....+|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence            44566667777777777788888888888888888888888888777653  2233344555543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.03  E-value=15  Score=35.85  Aligned_cols=308  Identities=8%  Similarity=0.020  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740           91 IKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM  170 (502)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  170 (502)
                      ..++...+...++.......-...+..+.+.++|...+.++..      .+.+...-.....+....|+..+|......+
T Consensus        55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l  128 (618)
T 1qsa_A           55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL  128 (618)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            4455666655433333222223445566677888877775543      1345555566667777777766665555555


Q ss_pred             HHcCCCCCHHHHHHHHHHHH------------------hCCCHHHHHHHHHHhhcC-------------C---------C
Q 010740          171 VEEGIEPTPELYTALLAAYC------------------RNSLIDEAFVTLNQMKTL-------------P---------N  210 (502)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~~------------------~~g~~~~a~~~~~~~~~~-------------~---------~  210 (502)
                      -..| ...+..+..++..+.                  ..|+...|..+...+...             +         .
T Consensus       129 W~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~  207 (618)
T 1qsa_A          129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART  207 (618)
T ss_dssp             HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence            4443 222333333333333                  344444444443332100             0         0


Q ss_pred             CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 010740          211 CQPDVYT---YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQ----NIVLGGYGKAGMFDQMERVLSGMLESATCK  283 (502)
Q Consensus       211 ~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  283 (502)
                      ..++...   +...+.-+.+ .+.+.|...+....+.+. .+....    ..+.......+...++...+......   .
T Consensus       208 ~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~  282 (618)
T 1qsa_A          208 TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---S  282 (618)
T ss_dssp             SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---C
T ss_pred             cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---C
Confidence            0111111   1111222222 367888888887765432 233222    23333344445355666666665432   2


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------------C
Q 010740          284 PDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL------------Q  351 (502)
Q Consensus       284 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~  351 (502)
                      .+.......+....+.|+++.|...|+.|.... .......--+..++...|+.++|..+|..+...            |
T Consensus       283 ~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg  361 (618)
T 1qsa_A          283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIG  361 (618)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcC
Confidence            344444455555667799999999998876522 123444556667778889999999888877542            2


Q ss_pred             CCC-------C---hH-----HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010740          352 FPW-------T---SS-----TYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSV  414 (502)
Q Consensus       352 ~~~-------~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  414 (502)
                      .++       +   ..     .-...+..+...|....|...+..+...   .+......+.......|..+.++...
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~  436 (618)
T 1qsa_A          362 EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT  436 (618)
T ss_dssp             CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence            110       0   00     0112234566677777777777776653   23333334444445566666555433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.76  E-value=13  Score=34.68  Aligned_cols=95  Identities=9%  Similarity=0.011  Sum_probs=43.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHhhcC-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HH
Q 010740          183 TALLAAYCRNSLIDEAFVTLNQMKTL-PNCQPD---VYTYSTLIKACVDAMRFELIETLYQDMDE----RSVTPNT--VT  252 (502)
Q Consensus       183 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~--~~  252 (502)
                      ..|...+...|++.+|.+++..+... .+....   ...+...+..|...+++..|..++..+..    ....|+.  ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            44555555556666666555554321 111111   22344455555555666666555555421    1111111  22


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHH
Q 010740          253 QNIVLGGYGKAGMFDQMERVLSGML  277 (502)
Q Consensus       253 ~~~l~~~~~~~g~~~~a~~~~~~~~  277 (502)
                      +...+..+...+++.+|-+.|.++.
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3344444455555555555555443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.38  E-value=3.3  Score=35.03  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTP----ELYTALLAAYC  190 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~  190 (502)
                      +..+.+.|++++|++....-.+..  +-|...-..+++.+|-.|+++.|.+-++...+.  .|+.    ..|..+|.+- 
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-   78 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-   78 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH-
Confidence            345678899999999887666653  778888999999999999999999998888776  3443    3444444431 


Q ss_pred             hCCCHHHHHHHHHHhhcC---CCCC-CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 010740          191 RNSLIDEAFVTLNQMKTL---PNCQ-PDVYTYSTLIKACV--DAMRFELIETLYQDMDER  244 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~---~~~~-~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~  244 (502)
                               ..=.++...   +++. ....-...++.+..  ..|+.++|..+-.++.+.
T Consensus        79 ---------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           79 ---------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ---------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                     111122211   1111 12223344555443  458888888887777553

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=89.34  E-value=17  Score=35.48  Aligned_cols=315  Identities=6%  Similarity=-0.045  Sum_probs=151.2

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEG-TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSL  194 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  194 (502)
                      ....+.|++..+..+-..+...   +.... .|..+...+ .....++....+++..  +.+.....-+..+..+.+.++
T Consensus        14 ~~a~~~~~~~~~~~l~~~l~~~---pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~   87 (618)
T 1qsa_A           14 KQAWDNRQMDVVEQMMPGLKDY---PLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARRED   87 (618)
T ss_dssp             HHHHHTTCHHHHHHHSGGGTTS---TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHhhcCC---CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCC
Confidence            3455678888888876665432   22211 333333222 2224555555554432  112223344566777778888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH--HHHH
Q 010740          195 IDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ--MERV  272 (502)
Q Consensus       195 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~--a~~~  272 (502)
                      +...+.++..      .+.+...--....+....|+..+|......+-..|.. ....+..++..+.+.|....  ...-
T Consensus        88 w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R  160 (618)
T 1qsa_A           88 WRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLER  160 (618)
T ss_dssp             HHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            8877765432      1345555555677777888887777777776655533 45567777777776664432  2222


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHH---HHHHHHHHHHccCcHHHH
Q 010740          273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF---------GIDPETR---TFNILIGAYGKKRMYDKM  340 (502)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~---~~~~l~~~~~~~g~~~~a  340 (502)
                      ++.+...+    +...-..++... . .+.....+.+..+...         .+.++..   .+...+.-+.+ .+.+.|
T Consensus       161 ~~~al~~~----~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A  233 (618)
T 1qsa_A          161 IRLAMKAG----NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENA  233 (618)
T ss_dssp             HHHHHHTT----CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHH
T ss_pred             HHHHHHCC----CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHH
Confidence            23332221    111111111110 0 0000000001111110         0112221   11112222233 356777


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHH----HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010740          341 SSVMEYMRKLQFPWTSSTYNNVIEAF----SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRL  416 (502)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  416 (502)
                      ...+....+...- +......+-..+    ...+...++...+......  ..+.....-.+....+.|+++.|...++.
T Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~  310 (618)
T 1qsa_A          234 RLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLAR  310 (618)
T ss_dssp             HHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777766544322 333322222222    2233234455555554432  23443344444444566778887777776


Q ss_pred             HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010740          417 ASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE  454 (502)
Q Consensus       417 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  454 (502)
                      |.... .....-.--+..++...|+.++|..+|+.+..
T Consensus       311 l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          311 LPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             SCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            65422 11233344556667777888888777777764

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=89.01  E-value=4.3  Score=30.02  Aligned_cols=42  Identities=17%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          414 VRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ++.+...++.|++.+....+++|.+.+|+.-|.++|+-.+.+
T Consensus        76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K  117 (152)
T 2y69_E           76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK  117 (152)
T ss_dssp             HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            333334444555555555555555555555555555544443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.61  E-value=5  Score=31.10  Aligned_cols=28  Identities=14%  Similarity=0.115  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          460 DSETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      +.+.-.-+..+|.+.|++++|+.+++..
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            3444455778889999999999988764

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.42  E-value=12  Score=32.67  Aligned_cols=22  Identities=9%  Similarity=-0.136  Sum_probs=16.4

Q ss_pred             HHHhcCCcHHHHHHHHHHHHhh
Q 010740          470 AYAKEGMNDKVYALEQEKLQML  491 (502)
Q Consensus       470 ~~~~~g~~~~A~~~~~~~~~~~  491 (502)
                      -|...|+...|..+++...+..
T Consensus       197 ~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          197 NYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHH
Confidence            3556788888888888776654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.16  E-value=3.8  Score=30.26  Aligned_cols=63  Identities=25%  Similarity=0.270  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010740          159 QPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIK  223 (502)
Q Consensus       159 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~  223 (502)
                      |.=+.++-++.+...++.|++.+....+++|-+.+++..|+.+|+-++..  +.+...+|..++.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence            34456666666666777788888888888888888888888888777653  2333445555543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.02  E-value=4.3  Score=34.39  Aligned_cols=122  Identities=11%  Similarity=0.009  Sum_probs=74.4

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH----HHHHHHHHHHHcC
Q 010740          365 AFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS----FYNAVISACIKAD  440 (502)
Q Consensus       365 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g  440 (502)
                      ...+.|+++++++....-++.. +-|...-..|+..+|-.|+++.|.+=++...+..  |+..    .|..+|.+     
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a-----   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA-----   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH-----
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH-----
Confidence            3456777888877777776653 3456666677788888888888888777776643  3322    23333322     


Q ss_pred             CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740          441 DLMEMERVYKRMKEKHCRP-----DSETFSIMTEAYA--KEGMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       441 ~~~~a~~~~~~~~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                           +..-.+...-+-.|     ...-...++.+..  ..|+.++|.++-+++.+..+...|.+.
T Consensus        78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~  138 (273)
T 1zbp_A           78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  138 (273)
T ss_dssp             -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence                 22222222222111     2333445555543  568999999999999888777776553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.02  E-value=7.6  Score=28.76  Aligned_cols=69  Identities=12%  Similarity=-0.027  Sum_probs=39.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          352 FPWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       352 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      ..|+..+--.+..++.+..+   ..+++.+++++.+.+..-....+..|.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            33455555555555555543   3356666666665542123445556666677777777777777766663

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.15  E-value=7.5  Score=26.96  Aligned_cols=51  Identities=10%  Similarity=0.070  Sum_probs=25.1

Q ss_pred             HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010740          259 GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG  316 (502)
Q Consensus       259 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  316 (502)
                      .+...|+|++|..+.+..     +.||...|-++..  .+.|-.+++...+.++...|
T Consensus        49 SLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   99 (116)
T 2p58_C           49 SLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ   99 (116)
T ss_dssp             HHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred             HHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            345555555555554433     2455555554433  24555555555555554444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.86  E-value=19  Score=31.42  Aligned_cols=84  Identities=10%  Similarity=-0.073  Sum_probs=40.9

Q ss_pred             HHHhcCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010740          153 LLGKSGQPELARK----VFNEMVEEGIEPTPELYTALLAAYCRNSL--------IDEAFVTLNQMKTLPNCQPDVYTYST  220 (502)
Q Consensus       153 ~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (502)
                      .+.+.|+...|-+    +++.+.+.+++++......++..+.....        .++|+.+-.+.-.  ...-|......
T Consensus        62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~  139 (312)
T 2wpv_A           62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNT  139 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHH
T ss_pred             HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHH
Confidence            3444555544433    45555556677776666666665544321        1122222222111  01235555666


Q ss_pred             HHHHHHhcCCHHHHHHHH
Q 010740          221 LIKACVDAMRFELIETLY  238 (502)
Q Consensus       221 ll~~~~~~~~~~~a~~~~  238 (502)
                      +...|.+.+++.+|+..|
T Consensus       140 ~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          140 IGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhhcCCHHHHHHHH
Confidence            666666666666665544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=83.71  E-value=7.3  Score=26.99  Aligned_cols=78  Identities=9%  Similarity=0.057  Sum_probs=35.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010740          230 RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWY  309 (502)
Q Consensus       230 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  309 (502)
                      ..++|..+-+.+...+.  ...+-.+-+..+...|+|++|..+.+..     +.||...|-++..  .+.|-.+++...+
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL   91 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL   91 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence            34555555554444432  1111112223345555666555544332     2455555554432  2555555555555


Q ss_pred             HHHHhCC
Q 010740          310 EKFRNFG  316 (502)
Q Consensus       310 ~~~~~~~  316 (502)
                      .++...|
T Consensus        92 ~~la~sg   98 (115)
T 2uwj_G           92 AGLGGSS   98 (115)
T ss_dssp             HHHHTCS
T ss_pred             HHHHhCC
Confidence            5555444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.77  E-value=28  Score=31.66  Aligned_cols=92  Identities=10%  Similarity=-0.001  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCCHHHHHH---
Q 010740          221 LIKACVDAMRFELIETLYQDMDER--SVT---PNTVTQNIVLGGYGKAGMFDQMERVLSGMLESA-TCKPDVWTMNT---  291 (502)
Q Consensus       221 ll~~~~~~~~~~~a~~~~~~~~~~--g~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~---  291 (502)
                      ++..|...|++.+|.+++..+.+.  ...   --..++-.-+..|...+++.++...+....... .+.+++.....   
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~  184 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL  184 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence            455555566666665555555432  010   012334445556666666666666665553221 11122222111   


Q ss_pred             -HHHHHH-hcCCHHHHHHHHHHH
Q 010740          292 -ILSVFA-NKGQVDMMERWYEKF  312 (502)
Q Consensus       292 -l~~~~~-~~g~~~~a~~~~~~~  312 (502)
                       -...+. ..++|.+|...|-+.
T Consensus       185 ~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          185 QSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HhhHHHHHhccCHHHHHHHHHHH
Confidence             112234 566777776666544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.33  E-value=9.1  Score=35.50  Aligned_cols=58  Identities=10%  Similarity=0.041  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010740          147 YMKLLVLLGKSGQPELARKVFNEMVEEGI--EPTPELYTALLAAYCRNSLIDEAFVTLNQ  204 (502)
Q Consensus       147 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  204 (502)
                      +..+...|.+.|+++.|.+.|.++...-.  ..-...+-.+++.+...+++..+...+.+
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k  193 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA  193 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34444444444555555544444443211  11123334444444444444444444444

>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=81.98  E-value=0.27  Score=37.98  Aligned_cols=27  Identities=37%  Similarity=0.405  Sum_probs=0.0

Q ss_pred             CCcccccccccccccccCCCCCCCCCC
Q 010740            1 MGMASASASLSFSSSLLPSPLPHPHDT   27 (502)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~p~~~   27 (502)
                      |.||++++-+.|+++++|+.+|+|..+
T Consensus         3 ~a~~~~~s~~~f~sf~~~sk~~~~~~~   29 (190)
T 3bbn_U            3 QAQPSMASLSSFFSFLLPSKPPPPKPH   29 (190)
T ss_dssp             ---------------------------
T ss_pred             hhhhhhhhHHHHHHHhccCCCCCCCCC
Confidence            567776666778899999777765443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.97  E-value=21  Score=33.06  Aligned_cols=99  Identities=16%  Similarity=0.016  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--H
Q 010740          252 TQNIVLGGYGKAGMFDQMERVLSGMLESA-TCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNF---GIDPETRTF--N  325 (502)
Q Consensus       252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~  325 (502)
                      +...+...|.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+.++...   +-.++...-  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            44556666666666666666666664431 11222345555666666677777776666665431   212221110  0


Q ss_pred             HHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          326 ILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       326 ~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      .-...+...+++..|...|-+....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            1111223457777777776665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=80.08  E-value=17  Score=27.35  Aligned_cols=68  Identities=12%  Similarity=-0.009  Sum_probs=47.0

Q ss_pred             CCChHHHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          353 PWTSSTYNNVIEAFSDMGD---AKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       353 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      .++..+--.+..++.+...   ..+++.+++++.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4566666666677776654   4467778888777543224456666777888888888888888888874

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.02  E-value=7.8  Score=31.14  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=40.8

Q ss_pred             cCChHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010740          404 AGLFHKVISSVRLASKLQIAEN-VSFYNAVISACIKADDLMEMERVYKRMKEKHCRPD  460 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~  460 (502)
                      .++..++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-+|-
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY  149 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            4446678888888877765443 44567777777788888888888888887777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.35
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.25
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.23
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.57
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.52
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.46
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.27
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.24
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.02
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.97
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.94
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.88
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.87
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.74
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.7
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.48
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.88
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.37
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.34
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.27
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-23  Score=192.18  Aligned_cols=370  Identities=13%  Similarity=0.094  Sum_probs=311.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+.+.|++++|++.|+.+.+..  +-+..++..+..++.+.|++++|...|+++++.. +-+..+|..+..+|...|++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            44567899999999999998763  5578899999999999999999999999999875 55688999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSG  275 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  275 (502)
                      ++|++.+....+..  +.+...+..........+....+............. ...............+....+...+..
T Consensus        84 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          84 QEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence            99999999998743  566666666666777777777777766666555333 455566666777888888888888888


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 010740          276 MLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWT  355 (502)
Q Consensus       276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  355 (502)
                      .....  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+......... +
T Consensus       161 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~  236 (388)
T d1w3ba_         161 AIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H  236 (388)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred             hhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence            87653  3466788888899999999999999999988754 556778899999999999999999999999887665 7


Q ss_pred             hHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010740          356 SSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISA  435 (502)
Q Consensus       356 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  435 (502)
                      ...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  314 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence            7888889999999999999999999998863 3356788999999999999999999999888864 6778889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          436 CIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       436 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                      +...|++++|++.|++..+... -+..++..+..+|.+.|++++|++.|+++++..|+....|
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~  376 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY  376 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            9999999999999999987532 2577899999999999999999999999999988766544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-20  Score=171.67  Aligned_cols=355  Identities=14%  Similarity=0.036  Sum_probs=296.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          108 VNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       108 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      ...+..+...+...|++++|+..|+.+.+..  +-+..+|..+..++...|++++|...+....+.. +.+.........
T Consensus        33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~  109 (388)
T d1w3ba_          33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA  109 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccccccccccccccc-cccccccccccc
Confidence            3455556677888999999999999988864  5577899999999999999999999999999875 455666666666


Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      .....+....+..........  ..................+....+...+........ -+...+..+...+...|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  186 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHH
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHH
Confidence            666666666666666655542  245555666677777888889999888888877643 36778888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYM  347 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  347 (502)
                      +|...++..++..  +.+...+..+...+...|++++|...+++....+ +.+...+..+...+.+.|++++|...|+++
T Consensus       187 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         187 LAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999988753  3467788999999999999999999999998765 566778888999999999999999999999


Q ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChH
Q 010740          348 RKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVS  427 (502)
Q Consensus       348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  427 (502)
                      .+.... +...+..+...+...|++++|.+.++...... +.+...+..+...+...|++++|++.++++.+.. +.+..
T Consensus       264 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~  340 (388)
T d1w3ba_         264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAA  340 (388)
T ss_dssp             HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            987655 78899999999999999999999999988763 5577888999999999999999999999998864 55678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 010740          428 FYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAKEGM  476 (502)
Q Consensus       428 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~  476 (502)
                      ++..+..+|.+.|++++|++.|++..+.  .| +...|..+..+|.+.||
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999985  44 57789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-14  Score=129.89  Aligned_cols=243  Identities=12%  Similarity=0.062  Sum_probs=141.3

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS  193 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  193 (502)
                      ....+.+.|++++|+..|+.+.+..  +-+..+|..+..++...|++++|...|++..+.. +-+...|..+..+|...|
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            3444556677777777777766653  4456667777777777777777777777766653 345666666667777777


Q ss_pred             CHHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010740          194 LIDEAFVTLNQMKTLPNCQPDVYT-YSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERV  272 (502)
Q Consensus       194 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~  272 (502)
                      ++++|.+.+++....   .|+... +.......                    ...+.......+..+...+.+.+|.+.
T Consensus       102 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         102 LQRQACEILRDWLRY---TPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             CHHHHHHHHHHHHHT---STTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHh---ccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHH
Confidence            777777777766553   122110 00000000                    000000111111223334455666666


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 010740          273 LSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQF  352 (502)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  352 (502)
                      +.+.++......+...+..+...+...|++++|+..|++..... +-+...+..+..+|...|++++|.+.|+...+...
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            66665544334455666666677777777777777777766543 34456666666777777777777777776666543


Q ss_pred             CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010740          353 PWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHA  384 (502)
Q Consensus       353 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  384 (502)
                      . +...|..+..+|.+.|++++|++.|++.++
T Consensus       238 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         238 G-YIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3 556666677777777777777777766654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-14  Score=130.55  Aligned_cols=250  Identities=10%  Similarity=0.024  Sum_probs=153.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010740          220 TLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANK  299 (502)
Q Consensus       220 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (502)
                      .....+.+.|++++|...|+++.+.... +..+|..+..+|...|++++|...|.+.++..  +-+...+..+..+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccc
Confidence            4566677888888888888888877433 67788888888888888888888888887653  33567777788888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 010740          300 GQVDMMERWYEKFRNFGIDPETRTF-NILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYT  378 (502)
Q Consensus       300 g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  378 (502)
                      |++++|.+.++++....  |+.... ........ .                   .+.......+..+...+...+|.+.
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-G-------------------AGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhh-h-------------------cccccchhhHHHHHHhhHHHHHHHH
Confidence            88888888888877642  221110 00000000 0                   0000011111222333445556666


Q ss_pred             HHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010740          379 FEQMHAEG-MKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHC  457 (502)
Q Consensus       379 ~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~  457 (502)
                      |.+..+.. -..+...+..+...+...|++++|+..++...... +.+..+|..+..+|...|++++|++.|++..+...
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            66555432 12345556666666667777777777777666553 44566666677777777777777777777666421


Q ss_pred             CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccc
Q 010740          458 RPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  496 (502)
                       -+...|..+..+|.+.|++++|++.|+++++..|.+.+
T Consensus       238 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         238 -GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             -ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence             14556666777777777777777777777776665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-10  Score=103.14  Aligned_cols=231  Identities=6%  Similarity=-0.021  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010740          252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG-QVDMMERWYEKFRNFGIDPETRTFNILIGA  330 (502)
Q Consensus       252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  330 (502)
                      .++.+...+.+.+.+++|+++++++++..  +-+...|+....++...| ++++|+..+++..+.. +-+..+|..+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            33444444455555555555555555431  223344555555554443 3555555555555433 4445555555555


Q ss_pred             HHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 010740          331 YGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGL----  406 (502)
Q Consensus       331 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----  406 (502)
                      +.+.|++++|++.++.+.+.... +...|..+...+...|++++|++.++++++.+ +-+...|+.+...+...+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            55555555555555555555444 55555555555555555555655555555542 1234445544444444333    


Q ss_pred             --hHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh--cCCcHHHH
Q 010740          407 --FHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRP-DSETFSIMTEAYAK--EGMNDKVY  481 (502)
Q Consensus       407 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~--~g~~~~A~  481 (502)
                        +++|++.+..+.+.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+..++..|..  .+..+.+.
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence              355666665555543 4455555555444433 23455555555555432221 33444455555533  23444444


Q ss_pred             HHHHHHHH
Q 010740          482 ALEQEKLQ  489 (502)
Q Consensus       482 ~~~~~~~~  489 (502)
                      ..++++..
T Consensus       278 ~~~~ka~~  285 (315)
T d2h6fa1         278 DILNKALE  285 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.7e-10  Score=99.14  Aligned_cols=199  Identities=10%  Similarity=0.034  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          144 EGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNS-LIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       144 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      ..+|+.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|++.+++..+..  +-+..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHh
Confidence            4477778888888889999999999998875 556778888888888776 4889999998887743  66788888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-
Q 010740          223 KACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQ-  301 (502)
Q Consensus       223 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  301 (502)
                      .++.+.|++++|+..++.+.+.... +...|..+...+.+.|++++|++.++.+++..  +.+...|+.+..++.+.+. 
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHcccc
Confidence            8888888888888888888876443 67888888888888888888888888887753  3456677766666555544 


Q ss_pred             -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          302 -----VDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       302 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                           +++|++.+.+..+.. +.+...|..+...+...| .+++.+.++...+.
T Consensus       197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence                 455666666655543 344555555544443332 34455555554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=5e-09  Score=94.35  Aligned_cols=194  Identities=8%  Similarity=-0.022  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--C----ChHH
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFG----IDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP--W----TSST  358 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~~~  358 (502)
                      +..+...+...|+++.+...+.......    .......+..+...+...+.+..+...+.........  .    ....
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~  215 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA  215 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence            3344455555666666666555554321    1112233344444555556666655555544332110  0    1123


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-ChHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKA---DTKTFCCLINGYANAGLFHKVISSVRLASKL----QIAE-NVSFYN  430 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~  430 (502)
                      +..+...+...|++++|...++.........   ....+..+..++...|++++|...++.+...    +..| ...++.
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  295 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL  295 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence            4444555666677777777766655432211   2234555666777777777777777665432    2222 244566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCcHHHHH
Q 010740          431 AVISACIKADDLMEMERVYKRMKEK----HCRP----DSETFSIMTEAYAKEGMNDKVYA  482 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~~~~~~~~----g~~p----~~~~~~~l~~~~~~~g~~~~A~~  482 (502)
                      .+..+|...|++++|.+.+++..+.    |...    .......++..+...+..+++.+
T Consensus       296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            6777777788888888777766542    2210    12234455666667777776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=9.6e-10  Score=97.03  Aligned_cols=192  Identities=10%  Similarity=0.075  Sum_probs=148.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 010740          301 QVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFE  380 (502)
Q Consensus       301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  380 (502)
                      ..++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888888887555566677788888888889999999999988876555445578888888888899999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 010740          381 QMHAEGMKADTKTFCCLING-YANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKH-CR  458 (502)
Q Consensus       381 ~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~  458 (502)
                      ++.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+...|+++.|..+|++..... ..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            98876432 33344333332 34568889999999988876 46678889999999999999999999999988763 23


Q ss_pred             C--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          459 P--DSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       459 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      |  ....|...+..-...|+.+.+.++++++.+..++.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            3  24578888888888899999999999998877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-09  Score=97.84  Aligned_cols=271  Identities=11%  Similarity=0.036  Sum_probs=180.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC----HHHHHHHH
Q 010740          222 IKACVDAMRFELIETLYQDMDERSVTPN----TVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD----VWTMNTIL  293 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~  293 (502)
                      ...+...|++++|++++++..+.....+    ...+..+...|...|++++|...+++.++...-.++    ...+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3445556666666666666555422111    234455556666667777777776665432111111    23445566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC----CChHHHHHH
Q 010740          294 SVFANKGQVDMMERWYEKFRN----FGIDPE---TRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFP----WTSSTYNNV  362 (502)
Q Consensus       294 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l  362 (502)
                      ..+...|++..+...+.+...    .+....   ...+..+...+...|+++.+...+.........    .....+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            677778888888887776653    111111   235566778888999999999999888765332    233456666


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChHHHHHHH
Q 010740          363 IEAFSDMGDAKHMEYTFEQMHAEG--MKAD----TKTFCCLINGYANAGLFHKVISSVRLASKLQIAE---NVSFYNAVI  433 (502)
Q Consensus       363 ~~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~  433 (502)
                      ...+...++...+...+.+.....  ....    ...+..+...+...|++++|...++.........   ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            777888899999988887765421  1111    2345666778889999999999998876653222   234556688


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhh
Q 010740          434 SACIKADDLMEMERVYKRMKEK----HCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLL  492 (502)
Q Consensus       434 ~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  492 (502)
                      .++...|++++|...++++...    +..|+ ...+..+..+|.+.|++++|.+.++++++...
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            8999999999999999987632    34343 44778888999999999999999999988754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=3.2e-11  Score=108.28  Aligned_cols=225  Identities=6%  Similarity=-0.111  Sum_probs=129.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCcHHHH
Q 010740          264 GMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG--QVDMMERWYEKFRNFGIDPETRTFN-ILIGAYGKKRMYDKM  340 (502)
Q Consensus       264 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a  340 (502)
                      |++++|+.+++..++..  +.+...|..+..++...+  ++++|...+.++.+.. +.+...+. .....+...+.+++|
T Consensus        87 ~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          87 ALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence            44556666666665542  334555555555554444  3666666666666543 33344433 333555556677777


Q ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          341 SSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      +..++.+.+.++. +...|+.+...+.+.|++++|...+....+.  .|+   ...+...+...+..+++...+......
T Consensus       164 l~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         164 LAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            7777666666554 6666777777777777666655444433321  111   111223344455556666666665554


Q ss_pred             CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740          421 QIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       421 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                      . +++...+..++..+...|+.++|...+.+....... +..+|..+..+|...|++++|++.++++++..|....-|.
T Consensus       238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence            3 344445555666666677777777777766654221 3456666777777777777777777777777766554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.4e-10  Score=99.93  Aligned_cols=151  Identities=15%  Similarity=0.041  Sum_probs=91.6

Q ss_pred             hcHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010740          122 KQWFQALQVFEMLKEQPFYQP--KEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAF  199 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  199 (502)
                      .+.+.|+.-++.+.......+  ...+|..+..+|.+.|++++|...|++.++.. +-+..+|..+..++...|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence            344555555555554421111  12356666777777777777777777777664 456677777777777777777777


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010740          200 VTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGM  276 (502)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  276 (502)
                      +.|+++.+..  +.+..++..+..++...|++++|...|+...+.... +......+...+.+.+..+.+..+....
T Consensus        92 ~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
T d1xnfa_          92 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHF  165 (259)
T ss_dssp             HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            7777777642  445566777777777777777777777777665322 3333333333444444444444444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.5e-09  Score=93.35  Aligned_cols=217  Identities=10%  Similarity=0.026  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          124 WFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKS--------------GQPELARKVFNEMVEEGIEPTPELYTALLAAY  189 (502)
Q Consensus       124 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (502)
                      .+++..+|+++...  .+.+...|...+..+...              +..++|..+|++.++...+.+...|...+..+
T Consensus        32 ~~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          32 TKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            45566667666554  244555555544443222              22345555555555443334444555555555


Q ss_pred             HhCCCHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCChH
Q 010740          190 CRNSLIDEAFVTLNQMKTLPNCQPD-VYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGG-YGKAGMFD  267 (502)
Q Consensus       190 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~g~~~  267 (502)
                      ...|+++.|..+|+++.+..  +.+ ...|...+..+.+.|+++.|.++|+.+.+.+.. +...|...... +...|+.+
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred             HhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHH
Confidence            55566666666665555421  112 234555555555555555555555555544322 22223222221 22234555


Q ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCcHHHHHHHH
Q 010740          268 QMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFG-IDPE--TRTFNILIGAYGKKRMYDKMSSVM  344 (502)
Q Consensus       268 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~  344 (502)
                      .|..+|+.+++..  +.+...|...+..+.+.|+++.|..+|++..... ..|.  ...|...+..-...|+.+.+.+++
T Consensus       187 ~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~  264 (308)
T d2onda1         187 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555555554431  2234444444444445555555555555444322 1111  223444444333444444444444


Q ss_pred             HHH
Q 010740          345 EYM  347 (502)
Q Consensus       345 ~~~  347 (502)
                      +++
T Consensus       265 ~r~  267 (308)
T d2onda1         265 KRR  267 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.7e-10  Score=99.37  Aligned_cols=128  Identities=8%  Similarity=-0.139  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740          252 TQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAY  331 (502)
Q Consensus       252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  331 (502)
                      ++..+..+|.+.|++++|++.|++.++..  +-+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..+|
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            44455555666666666666666665532  2345556666666666666666666666665543 33444555555566


Q ss_pred             HccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010740          332 GKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMH  383 (502)
Q Consensus       332 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  383 (502)
                      ...|++++|.+.|+...+.... +......+..++.+.+..+.+..+.....
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            6666666666666665554332 33333333333344444444433333333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=1.5e-10  Score=103.78  Aligned_cols=250  Identities=6%  Similarity=-0.129  Sum_probs=154.3

Q ss_pred             hcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----------HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740          122 KQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLL----------GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR  191 (502)
Q Consensus       122 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (502)
                      +..++|+++++.+.+..  |-+...|+..-..+          ...|++++|+..++...+.. +.+...|..+..++..
T Consensus        43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence            34589999999988753  34445565433332          23344778888888887764 5577777777777766


Q ss_pred             CCC--HHHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 010740          192 NSL--IDEAFVTLNQMKTLPNCQPDVYTYST-LIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQ  268 (502)
Q Consensus       192 ~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  268 (502)
                      .++  +++|+..++++.+..  +.+...+.. ....+...+.++.|+..++.+.+.+.. +...|+.+...+.+.|++++
T Consensus       120 ~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         120 LPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred             hccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence            654  788888888887642  455666544 445666678888888888888877544 77788888888888888877


Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 010740          269 MERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMR  348 (502)
Q Consensus       269 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  348 (502)
                      |...+....+.   .|+   .......+...+..+++...+....... +++...+..+...+...|+.++|...+.+..
T Consensus       197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  269 (334)
T d1dcea1         197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELE  269 (334)
T ss_dssp             SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            76555443321   111   1112233344555555666666555543 3334444445555555566666666666555


Q ss_pred             HcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 010740          349 KLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAE  385 (502)
Q Consensus       349 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  385 (502)
                      +..+. +...+..+..++...|+.++|.+.|++..+.
T Consensus       270 ~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         270 PENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             TTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             hhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            54332 3445555556666666666666666666553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=5.6e-08  Score=79.44  Aligned_cols=105  Identities=10%  Similarity=-0.003  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740          389 ADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       389 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~  468 (502)
                      |+...+......|...|++++|+..|+.+++.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            334444444555555555555555555555443 344555555555555555555555555555543211 344555555


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          469 EAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .+|.+.|++++|+..|+++++..|...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            555555555555555555555544433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.6e-07  Score=67.62  Aligned_cols=105  Identities=15%  Similarity=-0.037  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740          112 AETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR  191 (502)
Q Consensus       112 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (502)
                      ......+...|++++|+.+|+.+.+..  +.+...|..+..++...|++++|+..++...+.+ +.+...|..+..++..
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence            344556778899999999999888764  6677889999999999999999999999998876 6788889999999999


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      .|++++|+..|++..+..  +-+...+..+
T Consensus        84 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~l  111 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHE--ANNPQLKEGL  111 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            999999999999988752  4444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.5e-08  Score=70.57  Aligned_cols=97  Identities=14%  Similarity=0.021  Sum_probs=57.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 010740          398 INGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMN  477 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~  477 (502)
                      ...+...|++++|+..|+.+++.. +.+...|..+..+|...|++++|+..+++..+.+. .+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence            444555666666666666665543 44555566666666666666666666666665432 2555666666666666666


Q ss_pred             HHHHHHHHHHHHhhhhccc
Q 010740          478 DKVYALEQEKLQMLLEASG  496 (502)
Q Consensus       478 ~~A~~~~~~~~~~~~~~~~  496 (502)
                      ++|+..++++++..|.+..
T Consensus        88 ~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCHH
Confidence            6666666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.2e-07  Score=71.74  Aligned_cols=127  Identities=13%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+...|++++|++.|+.+     .+|+..+|..+..++...|++++|.+.|++.++.+ +.+...|..+..++.+.|++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            3456789999999999864     25678889999999999999999999999999886 56788999999999999999


Q ss_pred             HHHHHHHHHhhcCC-C----------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010740          196 DEAFVTLNQMKTLP-N----------C--QP-DVYTYSTLIKACVDAMRFELIETLYQDMDERSVTP  248 (502)
Q Consensus       196 ~~a~~~~~~~~~~~-~----------~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~  248 (502)
                      ++|++.|++..... +          .  .. ...++..+..++.+.|++++|.+.+....+....+
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999998875421 0          0  01 13456667778888888888888888877765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=3e-07  Score=79.77  Aligned_cols=196  Identities=10%  Similarity=0.054  Sum_probs=99.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-----ChHHHHHHHH
Q 010740          295 VFANKGQVDMMERWYEKFRNF----GIDP-ETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-----TSSTYNNVIE  364 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~  364 (502)
                      .|...|++++|.+.|.+..+.    +-++ -..+|..+..+|.+.|++++|.+.++...+.....     ...++..+..
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  125 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence            455555556555555555431    1111 12345555666666666666666665544321110     1233444454


Q ss_pred             HHHh-cCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh------HHHHHH
Q 010740          365 AFSD-MGDAKHMEYTFEQMHAE----GMKAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQIAENV------SFYNAV  432 (502)
Q Consensus       365 ~~~~-~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l  432 (502)
                      .|.. .|++++|.+.|++..+.    +..+. ..++..+...+...|++++|.+.++.+.........      ..+...
T Consensus       126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (290)
T d1qqea_         126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (290)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence            5533 47777777777665432    11111 234566677777777777777777776654211111      123344


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCcHHHHHHHHHHHHh
Q 010740          433 ISACIKADDLMEMERVYKRMKEKHCR-PD---SETFSIMTEAYAK--EGMNDKVYALEQEKLQM  490 (502)
Q Consensus       433 ~~~~~~~g~~~~a~~~~~~~~~~g~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~  490 (502)
                      +..+...|+++.|.+.+++..+.... ++   ......++.++..  .+.+++|+..|+++.+.
T Consensus       206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            44556677777777777777654211 11   2233445555544  23466666666554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=8.4e-07  Score=71.31  Aligned_cols=122  Identities=11%  Similarity=0.015  Sum_probs=65.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhH
Q 010740          295 VFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKH  374 (502)
Q Consensus       295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  374 (502)
                      .+...|++++|++.|.++    .+++..++..+..+|...|++++|.+.|++..+.+.. +...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            344555566665555442    1344555555555566666666666666655555443 45555555555666666666


Q ss_pred             HHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 010740          375 MEYTFEQMHAEGM--------------KAD-TKTFCCLINGYANAGLFHKVISSVRLASKLQ  421 (502)
Q Consensus       375 a~~~~~~m~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  421 (502)
                      |.+.|++......              ..+ ..++..+..++...|++++|.+.+..+.+..
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            6655555543210              001 2344455556666666666666666655543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=4.8e-07  Score=78.47  Aligned_cols=165  Identities=9%  Similarity=-0.037  Sum_probs=85.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCC----CCCCCHHHHHH
Q 010740          150 LLVLLGKSGQPELARKVFNEMVEE----GIEP-TPELYTALLAAYCRNSLIDEAFVTLNQMKTLP----NCQPDVYTYST  220 (502)
Q Consensus       150 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~  220 (502)
                      ....|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|++.+++..+..    .......++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            345666777777777777766543    1111 13456667777777777777777776554320    00111233444


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-----HHHH
Q 010740          221 LIKACVD-AMRFELIETLYQDMDER----SVTP-NTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPD-----VWTM  289 (502)
Q Consensus       221 ll~~~~~-~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~  289 (502)
                      +...|.. .|++++|.+.+++..+.    +..+ -..++..+...|...|++++|.+.|+++.......+.     ...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            5545533 46666666666665431    1111 1234555566666666666666666665443211110     0122


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010740          290 NTILSVFANKGQVDMMERWYEKFRN  314 (502)
Q Consensus       290 ~~l~~~~~~~g~~~~a~~~~~~~~~  314 (502)
                      ...+..+...|+++.|...+++..+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3333444555666666666655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.3e-07  Score=70.19  Aligned_cols=107  Identities=10%  Similarity=-0.026  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      +......+.+.|++++|+..|+.+.+..  +-+...|..+..+|...|++++|...|++.++.. +-+..+|..+..++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3444556678889999999998888764  5677788888888888899999999998888775 556788888888888


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLI  222 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  222 (502)
                      ..|++++|+..+++.....  +-+...+..+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~--p~~~~~~~~l~  119 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQ  119 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence            8899999988888887742  34455444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1e-06  Score=68.51  Aligned_cols=87  Identities=11%  Similarity=-0.013  Sum_probs=36.2

Q ss_pred             HHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 010740          188 AYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFD  267 (502)
Q Consensus       188 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~  267 (502)
                      .|.+.|++++|+..|++..+..  +.+...|..+..+|...|++++|...|+..++.... +..+|..+..++...|+++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence            3334444444444444444321  333444444444444444444444444444433211 3334444444444444444


Q ss_pred             HHHHHHHHHH
Q 010740          268 QMERVLSGML  277 (502)
Q Consensus       268 ~a~~~~~~~~  277 (502)
                      +|.+.+++.+
T Consensus        96 eA~~~~~~a~  105 (159)
T d1a17a_          96 AALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.3e-07  Score=69.52  Aligned_cols=99  Identities=7%  Similarity=-0.017  Sum_probs=54.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 010740          396 CLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADD---LMEMERVYKRMKEKHCRPD-SETFSIMTEAY  471 (502)
Q Consensus       396 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~  471 (502)
                      .+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|+.+|+++...+..|+ ..+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34555555566666666666665554 4455555556665554333   3346666666555432222 22455566666


Q ss_pred             HhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          472 AKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       472 ~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      .+.|++++|++.|+++++..|.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            666666666666666666655543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=1.2e-06  Score=71.11  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      |+...+......+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|+..|++..+..  +-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence            455556666666666666666666666666554 4556666666666666666666666666666532  3445566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 010740          222 IKACVDAMRFELIETLYQDMDE  243 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~  243 (502)
                      ..+|...|++++|+..|++..+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.51  E-value=0.0002  Score=60.33  Aligned_cols=114  Identities=11%  Similarity=-0.013  Sum_probs=65.5

Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHH
Q 010740          372 AKHMEYTFEQMHAEGMKADTKTFCCLINGYAN----AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLM  443 (502)
Q Consensus       372 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  443 (502)
                      ...+...+......   .+...+..|...|..    ..+...+..+++...+.|   +......+...|..    ..+.+
T Consensus       126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence            33444444443332   234444445555543    334455555555555533   34444445544544    45788


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHhhhhc
Q 010740          444 EMERVYKRMKEKHCRPDSETFSIMTEAYAK----EGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       444 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      +|+.+|++..+.|   ++..+..|...|.+    ..+.++|.++|+++...+...
T Consensus       200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            8888888887765   56666667776664    336778888888887776544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.50  E-value=0.00021  Score=60.21  Aligned_cols=59  Identities=14%  Similarity=0.004  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHhhc
Q 010740          146 TYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR----NSLIDEAFVTLNQMKT  207 (502)
Q Consensus       146 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  207 (502)
                      .+..|...+...+++++|.+.|++..+.|   +...+..|...|..    ..+...|..+++....
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            33444444444444444444444444433   23333333333333    3344444444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.46  E-value=1.3e-06  Score=63.15  Aligned_cols=90  Identities=6%  Similarity=-0.076  Sum_probs=61.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010740          397 LINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGM  476 (502)
Q Consensus       397 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~  476 (502)
                      +...+.+.|++++|...++++.... +-+...|..+..++.+.|++++|+..|++..+.... +...|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence            4555666777777777777776654 445667777777777777777777777777765322 56677777777777777


Q ss_pred             cHHHHHHHHHHH
Q 010740          477 NDKVYALEQEKL  488 (502)
Q Consensus       477 ~~~A~~~~~~~~  488 (502)
                      +++|++.+++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            777777777643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=0.00024  Score=61.44  Aligned_cols=136  Identities=13%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010740          142 PKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTL  221 (502)
Q Consensus       142 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  221 (502)
                      ||..-...+++.|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+.+.+.       -+..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHH
Confidence            4444555667777777777777777765432         455667777777777777776554       244567777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010740          222 IKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKG  300 (502)
Q Consensus       222 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  300 (502)
                      ...|.+......+     .+...+...+......++..|-..|.+++...+++..+..  -..+...++.++..|++.+
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC
Confidence            7777766655443     2223333345555566777777777777777777766432  2446666777777776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.38  E-value=1.6e-06  Score=62.54  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      ..+.+.|++++|+..|+.+....  +-+..+|..+..++.+.|++++|...|++..+.. +.+..+|..+..+|...|++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            34556677777777777766653  4456677777777777777777777777776654 44566777777777777777


Q ss_pred             HHHHHHHHHh
Q 010740          196 DEAFVTLNQM  205 (502)
Q Consensus       196 ~~a~~~~~~~  205 (502)
                      ++|++.|++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.5e-06  Score=61.57  Aligned_cols=94  Identities=11%  Similarity=0.080  Sum_probs=70.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 010740          113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQ---PELARKVFNEMVEEGIEPT-PELYTALLAA  188 (502)
Q Consensus       113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  188 (502)
                      .++..+...+++++|.+.|+.....+  +.+..++..+..++.+.++   +++|..+|+++...+..|+ ..++..+..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            45666777888888888888888765  6677888888888876554   4568888888876542222 2367778888


Q ss_pred             HHhCCCHHHHHHHHHHhhcC
Q 010740          189 YCRNSLIDEAFVTLNQMKTL  208 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~  208 (502)
                      |.+.|++++|++.|+++.+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            88888888888888888874

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=0.00089  Score=57.71  Aligned_cols=286  Identities=12%  Similarity=0.080  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010740          111 VAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYC  190 (502)
Q Consensus       111 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (502)
                      ...+...|.+.|.++.|..+|..+.          -|..++..+.+.++++.|.+++.+.      -+..+|..+...+.
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~   80 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV   80 (336)
T ss_dssp             ------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence            3345566678899999999987542          4788888889999999988877654      36778988899998


Q ss_pred             hCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 010740          191 RNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQME  270 (502)
Q Consensus       191 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~  270 (502)
                      +......|.     +... ....+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..
T Consensus        81 ~~~e~~la~-----i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~  152 (336)
T d1b89a_          81 DGKEFRLAQ-----MCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMR  152 (336)
T ss_dssp             HTTCHHHHH-----HTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred             hCcHHHHHH-----HHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHH
Confidence            887765542     2221 23456666678899999999999999999987654 2446778888888888864 33333


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          271 RVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      +.+...   .    +......++..|-..+-++++.-++.++...     ......++..+...-+.+...++   ..+.
T Consensus       153 e~l~~~---s----~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~-----~~A~~~~i~~~~~~~~~~~f~e~---~~k~  217 (336)
T d1b89a_         153 EHLELF---W----SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-----DNAIITMMNHPTDAWKEGQFKDI---ITKV  217 (336)
T ss_dssp             HHHHHH---S----TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH-----HHHHHHHHHSTTTTCCHHHHHHH---HHHC
T ss_pred             HHHHhc---c----ccCCHHHHHHHHHHcCChHHHHHHHHhcCCH-----HHHHHHHHHcchhhhhHHHHHHH---HHcc
Confidence            333322   1    1122234556677777777766666554321     01111111111111111111111   1111


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHH
Q 010740          351 QFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYN  430 (502)
Q Consensus       351 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  430 (502)
                         .|+..|-.++..|... +.+-...++..+...   .|.   ..++..+.+.+++.....+++.....+   +..+.+
T Consensus       218 ---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~  284 (336)
T d1b89a_         218 ---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNE  284 (336)
T ss_dssp             ---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred             ---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHH
Confidence               1333444444444432 122233333322221   121   234445556666666666666655544   346778


Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 010740          431 AVISACIKADDLMEMERV  448 (502)
Q Consensus       431 ~l~~~~~~~g~~~~a~~~  448 (502)
                      +|...|...++++.-.+.
T Consensus       285 al~~lyie~~d~~~l~~~  302 (336)
T d1b89a_         285 SLNNLFITEEDYQALRTS  302 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCcchhHHHHHH
Confidence            888888888886654433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.2e-05  Score=61.31  Aligned_cols=97  Identities=10%  Similarity=0.000  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAY  471 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~  471 (502)
                      .+|+.+..+|.+.|++++|+..++.+++.. |.+...|..+..+|...|++++|+..|++..+.... +......+..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  140 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            356677888889999999999998888875 567888888999999999999999999998886422 555555555554


Q ss_pred             HhcCCcHHH-HHHHHHHHHh
Q 010740          472 AKEGMNDKV-YALEQEKLQM  490 (502)
Q Consensus       472 ~~~g~~~~A-~~~~~~~~~~  490 (502)
                      .+.+...+. .+.+++|.+.
T Consensus       141 ~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1         141 QRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            444433322 2334444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.2e-05  Score=59.68  Aligned_cols=61  Identities=5%  Similarity=-0.088  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 010740          289 MNTILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKL  350 (502)
Q Consensus       289 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  350 (502)
                      |+.+..+|.+.|++++|+..++..+..+ +.+...+..+..+|...|++++|...|+...+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3344444445555555555554444432 334444444444455555555555555544444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7e-06  Score=60.77  Aligned_cols=95  Identities=11%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-------hHHHHH
Q 010740          359 YNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAEN-------VSFYNA  431 (502)
Q Consensus       359 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~  431 (502)
                      +..+...+...|++++|+..|.+.++.+ +.+...+..+..+|...|++++|+..++.+++.. +.+       ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            4456666777777777777777777653 2355666777777777777777777777666532 111       134555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          432 VISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       432 l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +...+...+++++|++.|++....
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc
Confidence            666666667777777777666553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=2.2e-05  Score=60.06  Aligned_cols=114  Identities=6%  Similarity=-0.067  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHH
Q 010740          357 STYNNVIEAFSDMGDAKHMEYTFEQMHAEGM----KADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAV  432 (502)
Q Consensus       357 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  432 (502)
                      ..+..-...+.+.|++.+|+..|.+....-.    .++.....                 ...       .....+|..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~-------~~~~~~~~Nl   73 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKK-------NIEISCNLNL   73 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhh-------hHHHHHHhhH
Confidence            3455556667777888888877777765311    01111000                 000       0012345556


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcc
Q 010740          433 ISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEAS  495 (502)
Q Consensus       433 ~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  495 (502)
                      ..+|.+.|++++|++.++...+.+. .+..+|..+..+|...|++++|+..|+++++..|.+.
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            6666666666666666666665432 2555666666666666666666666666666665544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2e-06  Score=80.53  Aligned_cols=134  Identities=11%  Similarity=-0.010  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010740          229 MRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERW  308 (502)
Q Consensus       229 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  308 (502)
                      +.++.++..+....+.. .++...+..+...+.+.|+.+.|...+...+..   . ...++..+...+...|++++|...
T Consensus       100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHH
Confidence            34444444444333221 223445566666666777777776666555432   1 124556667777777777777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 010740          309 YEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDM  369 (502)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  369 (502)
                      |++..+.. +.+...|+.|...+...|+..+|...|.+......+ -..++..|...+.+.
T Consensus       175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHh
Confidence            77777654 555667777777777777777777777777665443 566666666666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.06  E-value=8.9e-05  Score=56.55  Aligned_cols=125  Identities=10%  Similarity=-0.030  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010740          322 RTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGY  401 (502)
Q Consensus       322 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~  401 (502)
                      ..+..-...+.+.|++.+|...|......-.....              ..+....  .....    ....+|..+..+|
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--------------~~~~~~~--~~~~~----~~~~~~~Nla~~~   77 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--------------WDDQILL--DKKKN----IEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--------------CCCHHHH--HHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh--------------hhhHHHH--Hhhhh----HHHHHHhhHHHHH
Confidence            34555677888999999999999988864221100              0000000  00000    1124677788888


Q ss_pred             HhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010740          402 ANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMT  468 (502)
Q Consensus       402 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~  468 (502)
                      .+.|++++|++.++.+++.+ +.+..+|..+..++...|++++|+..|++..+..+. +..+...+-
T Consensus        78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~  142 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYE  142 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred             HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            88999999999988888875 667888888899999999999999999988875322 444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.05  E-value=7.6e-05  Score=58.03  Aligned_cols=99  Identities=11%  Similarity=0.050  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010740          393 TFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYA  472 (502)
Q Consensus       393 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~  472 (502)
                      +|..+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|++++|+..|+++.+... .+......+..+..
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            56667888889999999999999988875 67888888899999999999999999999988642 25556665555555


Q ss_pred             hcCCc-HHHHHHHHHHHHhhhh
Q 010740          473 KEGMN-DKVYALEQEKLQMLLE  493 (502)
Q Consensus       473 ~~g~~-~~A~~~~~~~~~~~~~  493 (502)
                      +.+.. +...+++.+|.+...+
T Consensus       144 ~~~~~~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMFKKFAE  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHHHHHHhhhhh
Confidence            54443 3456666666665443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.4e-06  Score=81.66  Aligned_cols=225  Identities=9%  Similarity=0.017  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 010740          162 LARKVFNEMVEEGIEPT-PELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDV-YTYSTLIKACVDAMRFELIETLYQ  239 (502)
Q Consensus       162 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~  239 (502)
                      +|.+.|++..+.  .|+ ...+..+..++...|++++|   |+++...   .|+. ..++.. ..+. ...+..+.+.++
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVE-QDLW-NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHH-HHHH-HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHH-HHHH-HHHHHHHHHHHH
Confidence            566777777654  233 34556666677777777665   5555432   1221 111111 1111 112344555555


Q ss_pred             HHHhCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010740          240 DMDERSVTPNTVTQNIVLG--GYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDMMERWYEKFRNFGI  317 (502)
Q Consensus       240 ~~~~~g~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  317 (502)
                      ...+....++..-....+.  .+...+.++.++..+....+.  -.++...+..+...+.+.|+.++|...+....... 
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH-
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence            5554433333222211111  122233444444444333221  02234455666666677777777776666554321 


Q ss_pred             CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010740          318 DPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCL  397 (502)
Q Consensus       318 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  397 (502)
                        ...++..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... .|-..++..|
T Consensus       151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL  226 (497)
T d1ya0a1         151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL  226 (497)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence              1245566666777777777777777777776554 66677777777777777777777777776653 4555666666


Q ss_pred             HHHHHh
Q 010740          398 INGYAN  403 (502)
Q Consensus       398 ~~~~~~  403 (502)
                      ...+.+
T Consensus       227 ~~~~~~  232 (497)
T d1ya0a1         227 QKALSK  232 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.02  E-value=0.00015  Score=56.23  Aligned_cols=110  Identities=14%  Similarity=0.031  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPF--YQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALL  186 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  186 (502)
                      ..+......+.+.|++++|+..|+.+...-.  ...+...                 ....+.+       ...+|..+.
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla   71 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLA   71 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHH
Confidence            4455566677889999999999987653210  1111100                 0000000       022344455


Q ss_pred             HHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          187 AAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       187 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      .+|.+.|++++|+..+++..+..  +.+..+|..+..++...|++++|...|+.+.+.
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55555566666665555555532  445555555555555666666666666555554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=7.3e-05  Score=55.03  Aligned_cols=91  Identities=12%  Similarity=0.103  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-C-----hHHHHHHHHH
Q 010740          292 ILSVFANKGQVDMMERWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPW-T-----SSTYNNVIEA  365 (502)
Q Consensus       292 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~~~  365 (502)
                      +...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...++.+.+..... .     ..+|..+...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555433 3344455555555555555555555555444321110 0     1233334444


Q ss_pred             HHhcCCHhHHHHHHHHHH
Q 010740          366 FSDMGDAKHMEYTFEQMH  383 (502)
Q Consensus       366 ~~~~~~~~~a~~~~~~m~  383 (502)
                      +...+++++|++.|+...
T Consensus        89 ~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHH
Confidence            444445555555554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.97  E-value=8.1e-06  Score=68.65  Aligned_cols=131  Identities=10%  Similarity=-0.051  Sum_probs=81.4

Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 010740          367 SDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEME  446 (502)
Q Consensus       367 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  446 (502)
                      .+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence            45678888888888877763 3356777788888888888888888888777753 333444444444444333333322


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhcccccc
Q 010740          447 RVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHWQ  499 (502)
Q Consensus       447 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  499 (502)
                      .-.......+-.++...+......+...|+.++|.++++++.+..+...+.|.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            21111111111122334445566678889999999999999888877766654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.94  E-value=0.00011  Score=57.17  Aligned_cols=124  Identities=6%  Similarity=-0.056  Sum_probs=65.6

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010740          113 ETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRN  192 (502)
Q Consensus       113 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (502)
                      .....+...|++++|++.|+.+.+..   +          ............       ... +.....|..+..++.+.
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~---~----------~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYV---E----------GSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH---H----------HHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhh---h----------hhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHhh
Confidence            34445667899999999998765310   0          000000000000       000 12234455556666666


Q ss_pred             CCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010740          193 SLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGY  260 (502)
Q Consensus       193 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~  260 (502)
                      |++++|+..++++.+..  +.+..+|..+..++...|++++|+..|+...+.... +......+..+.
T Consensus        91 ~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~  155 (169)
T d1ihga1          91 SDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            66666666666666542  455566666666666666666666666666654322 444444444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=0.00011  Score=57.25  Aligned_cols=133  Identities=14%  Similarity=-0.017  Sum_probs=92.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010740          148 MKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVD  227 (502)
Q Consensus       148 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  227 (502)
                      ......+...|++++|.+.|.++++.            ...........+.       ...  .+.....|..+..++.+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~-------~~~--~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG-------AKL--QPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH-------GGG--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH-------HHh--ChhhHHHHHHHHHHHHh
Confidence            34456677889999999988887642            0101111111111       110  02345678889999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010740          228 AMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLESATCKPDVWTMNTILSVFANKGQVDM  304 (502)
Q Consensus       228 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  304 (502)
                      .|++++|+..++..++... .+...|..+..+|...|++++|++.|+..++..  +.+......+..+..+.....+
T Consensus        90 ~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998754 378899999999999999999999999998863  3355666666665554444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=0.0003  Score=54.92  Aligned_cols=127  Identities=11%  Similarity=0.054  Sum_probs=87.0

Q ss_pred             HHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 010740          328 IGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLF  407 (502)
Q Consensus       328 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  407 (502)
                      .......|++++|.+.|.........+ ..         .......-+...-..+...    ....+..+..++...|++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence            345667888888888888887653211 00         0001111111111111111    234677788999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 010740          408 HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKE-----KHCRPDSETFSIMTE  469 (502)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~p~~~~~~~l~~  469 (502)
                      ++|+..++.+.... +.+...|..++.+|.+.|+..+|++.|+++..     .|+.|...+-...-.
T Consensus        84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2          84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            99999999999875 77899999999999999999999999998754     599999876544333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.88  E-value=0.00019  Score=54.82  Aligned_cols=101  Identities=12%  Similarity=0.046  Sum_probs=67.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCC-C----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-
Q 010740          398 INGYANAGLFHKVISSVRLASKLQIA-E----------NVSFYNAVISACIKADDLMEMERVYKRMKEK-----HCRPD-  460 (502)
Q Consensus       398 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~p~-  460 (502)
                      ...+...|++++|++.|++.++..-. |          ...+|+.+..+|.+.|++++|.+.+++....     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33445566777777777666553110 1          1346777788888888888888887776642     11122 


Q ss_pred             ----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhccccc
Q 010740          461 ----SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEASGHW  498 (502)
Q Consensus       461 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  498 (502)
                          ...+..+..+|...|++++|++.|++++++.++..+.+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence                22466778889999999999999999999887766654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.87  E-value=2.8e-05  Score=65.32  Aligned_cols=125  Identities=12%  Similarity=0.024  Sum_probs=84.5

Q ss_pred             HHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010740          116 SDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCRNSLI  195 (502)
Q Consensus       116 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  195 (502)
                      +...+.|++++|+..|+...+..  +.+...+..+...++..|++++|.+.|+...+.. +-+...+..+...+...+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcccc
Confidence            34557899999999999888874  6788899999999999999999999999998774 23345555555555444444


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010740          196 DEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDER  244 (502)
Q Consensus       196 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  244 (502)
                      +++..-....... +-+++...+......+...|+.++|.++++++.+.
T Consensus        81 ~~a~~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          81 KDFAQGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHTTSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhcc-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            4433322221111 11223334445566677788999998888887764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=0.00027  Score=55.19  Aligned_cols=127  Identities=11%  Similarity=-0.035  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010740          109 NTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAA  188 (502)
Q Consensus       109 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  188 (502)
                      .............|++++|.+.|.......  +-+..         ......+-+...-..+..    .....+..+..+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~   76 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            444455567778889999999998887741  11110         000110111111111211    124566778888


Q ss_pred             HHhCCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 010740          189 YCRNSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDE-----RSVTPNTVT  252 (502)
Q Consensus       189 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~  252 (502)
                      +...|++++|+..++++.+.+  +-+...|..++.++...|+.++|++.|+++.+     .|+.|...+
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            888889999988888888753  67888888888888888998888888888643     577777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=7e-05  Score=56.47  Aligned_cols=87  Identities=15%  Similarity=-0.060  Sum_probs=60.7

Q ss_pred             HHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010740          118 HVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKS----------GQPELARKVFNEMVEEGIEPTPELYTALLA  187 (502)
Q Consensus       118 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  187 (502)
                      +-+.+.+++|++.|+.+.+..  |.+..++..+..++...          +.+++|...|++.++.. +.+..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence            345678999999999988874  67788888888887754          34567777777777664 456677777777


Q ss_pred             HHHhCCC-----------HHHHHHHHHHhhc
Q 010740          188 AYCRNSL-----------IDEAFVTLNQMKT  207 (502)
Q Consensus       188 ~~~~~g~-----------~~~a~~~~~~~~~  207 (502)
                      +|...|+           +++|.+.|++..+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            7765442           4555555655554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.74  E-value=6.6e-05  Score=56.61  Aligned_cols=40  Identities=15%  Similarity=0.241  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 010740          442 LMEMERVYKRMKEKHCRPDSETFSIMTEAYAKEGMNDKVYALEQEKLQ  489 (502)
Q Consensus       442 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  489 (502)
                      +++|.+.|++..+.  .|+...+..-+..+      .+|.+++.+..+
T Consensus       102 ~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k  141 (145)
T d1zu2a1         102 FDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred             HHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            56777777777764  45555444333322      345555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00043  Score=47.49  Aligned_cols=64  Identities=14%  Similarity=-0.035  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          392 KTFCCLINGYANAGLFHKVISSVRLASKLQ-----IAE-NVSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       392 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      ..+..+...+.+.|++++|...++++.+..     ..+ ...+++.|..++.+.|++++|+..++++.+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            334456666666677777776666655431     011 1345666666666666666666666666664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.34  E-value=0.0027  Score=48.10  Aligned_cols=92  Identities=10%  Similarity=-0.064  Sum_probs=56.3

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-
Q 010740          115 FSDHVLKKQWFQALQVFEMLKEQPFYQPK----------EGTYMKLLVLLGKSGQPELARKVFNEMVEE-----GIEPT-  178 (502)
Q Consensus       115 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-  178 (502)
                      .......|++++|++.|+...+...-.|+          ...|+.+..+|...|++++|...+++.++.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33455678888998888877653211222          346777777778888888777777776542     11111 


Q ss_pred             ----HHHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 010740          179 ----PELYTALLAAYCRNSLIDEAFVTLNQMK  206 (502)
Q Consensus       179 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~  206 (502)
                          ..++..+..+|...|++++|++.|++..
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                1234556666666666666666666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0047  Score=41.98  Aligned_cols=61  Identities=16%  Similarity=0.043  Sum_probs=28.9

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010740          360 NNVIEAFSDMGDAKHMEYTFEQMHAEG-----MKAD-TKTFCCLINGYANAGLFHKVISSVRLASKL  420 (502)
Q Consensus       360 ~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  420 (502)
                      -.+...+.+.|++++|...|++..+..     ..++ ..++..+..++.+.|++++|+..++++++.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            344445555555555555555444321     1111 234455555555555555555555555553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.87  E-value=0.017  Score=41.99  Aligned_cols=85  Identities=11%  Similarity=-0.018  Sum_probs=52.5

Q ss_pred             cCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 010740          404 AGLFHKVISSVRLASKLQIAENVSFYNAVISACIK----ADDLMEMERVYKRMKEKHCRPDSETFSIMTEAYAK----EG  475 (502)
Q Consensus       404 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g  475 (502)
                      ..+.++|.++++...+.|   +......|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..
T Consensus        36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence            345666677766666654   33344445555543    346777777777777765   45555566666554    34


Q ss_pred             CcHHHHHHHHHHHHhhhhc
Q 010740          476 MNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       476 ~~~~A~~~~~~~~~~~~~~  494 (502)
                      +.++|.++++++.+.+...
T Consensus       110 d~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHCCCHH
Confidence            6777888888777766543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.044  Score=39.66  Aligned_cols=112  Identities=12%  Similarity=-0.048  Sum_probs=67.8

Q ss_pred             hhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHH
Q 010740          121 KKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR----NSLID  196 (502)
Q Consensus       121 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  196 (502)
                      ..++++|++.|+...+.+    +...+..|..  ....+.++|.+.+++..+.|   +...+..|...|..    ..+.+
T Consensus         6 ~kd~~~A~~~~~kaa~~g----~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN----EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT----CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHHCC----Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhH
Confidence            357888888888887776    3334444432  34456777888887777665   34555555555544    34567


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 010740          197 EAFVTLNQMKTLPNCQPDVYTYSTLIKACVD----AMRFELIETLYQDMDERS  245 (502)
Q Consensus       197 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g  245 (502)
                      +|+++|++..+.    -+......|...|..    ..+.++|.++|+...+.|
T Consensus        77 ~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          77 KAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777777776653    234444455555544    345666666666666655

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.48  E-value=0.07  Score=37.07  Aligned_cols=30  Identities=17%  Similarity=0.124  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010740          426 VSFYNAVISACIKADDLMEMERVYKRMKEK  455 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  455 (502)
                      +...-.+..+|.+-|...++.+++.+.-+.
T Consensus       120 ~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1         120 ASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            333333333344444444443333333333

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.56  Score=41.87  Aligned_cols=356  Identities=8%  Similarity=0.014  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010740           91 IKNLKKKLERKAKAKAWVNTVAETFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLLGKSGQPELARKVFNEM  170 (502)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  170 (502)
                      ..++...+...++.+.....-...+..+.+.++++..+..|.    .  .+.+...-...+.+....|+.+.|...+..+
T Consensus        55 ~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~----~--~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l  128 (450)
T d1qsaa1          55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP----E--KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL  128 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----S--CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            345555555543333222222334556667777776554432    1  2445555556677777778777777766665


Q ss_pred             HHcCCCCCHHHHHHHHHHHHh------------------CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHH
Q 010740          171 VEEGIEPTPELYTALLAAYCR------------------NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFE  232 (502)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  232 (502)
                      -..| ...+..+..+...+.+                  .|++..|..++..+..     .........+....   +..
T Consensus       129 W~~~-~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~-----~~~~~~~a~~~l~~---~p~  199 (450)
T d1qsaa1         129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA-----DYQTIASAIISLAN---NPN  199 (450)
T ss_dssp             HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG-----GGHHHHHHHHHHHH---CGG
T ss_pred             HhcC-CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh-----hHHHHHHHHHHHHh---ChH
Confidence            5444 1222222333333322                  3333333333322211     11111222222211   111


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCCCHHHHHHH----HHHHHhcCCHHHHH
Q 010740          233 LIETLYQDMDERSVTPNTVTQNIVLGGYGK--AGMFDQMERVLSGMLESATCKPDVWTMNTI----LSVFANKGQVDMME  306 (502)
Q Consensus       233 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~  306 (502)
                      .+.....   ..  ..+......+..++.+  ..+.+.|..++..........  ...+..+    .......+..+.+.
T Consensus       200 ~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~a~  272 (450)
T d1qsaa1         200 TVLTFAR---TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLN--EDQIQELRDIVAWRLMGNDVTDEQA  272 (450)
T ss_dssp             GHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTSCSTTCCHHHH
T ss_pred             hHHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccccc--HHHHHHHHHHHHHHHHHcCchHHHH
Confidence            1111111   11  1122222222222222  245666666666664443222  2222111    12222344556666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 010740          307 RWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEG  386 (502)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  386 (502)
                      .++......+  .+.......+......+++..+...+..+...... ...-.--+..++...|+.+.|...|..+..  
T Consensus       273 ~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--  347 (450)
T d1qsaa1         273 KWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ--  347 (450)
T ss_dssp             HHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred             HHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhc--
Confidence            6665555432  23333344444445556677666666655332111 233334455666677777777777776653  


Q ss_pred             CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCChH-H---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010740          387 MKADTKTFCCLINGYANAGL-FHKVISSVRLASKLQIAENVS-F---YNAVISACIKADDLMEMERVYKRMKEKHCRPDS  461 (502)
Q Consensus       387 ~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~  461 (502)
                       .++   |..++.+- +.|. +.-...      .....+... .   --.-+..+...|....|...+..+...   .+.
T Consensus       348 -~~~---fYG~LAa~-~Lg~~~~~~~~------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~  413 (450)
T d1qsaa1         348 -QRG---FYPMVAAQ-RIGEEYELKID------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSK  413 (450)
T ss_dssp             -SCS---HHHHHHHH-HTTCCCCCCCC------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCH
T ss_pred             -CCC---hHHHHHHH-HcCCCCCCCcC------CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCH
Confidence             222   33332221 1221 000000      000000000 0   112355677889999999999988764   367


Q ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHH
Q 010740          462 ETFSIMTEAYAKEGMNDKVYALEQEK  487 (502)
Q Consensus       462 ~~~~~l~~~~~~~g~~~~A~~~~~~~  487 (502)
                      .....+.....+.|.++.|+....++
T Consensus       414 ~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         414 TEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            77778888899999999999887764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.085  Score=36.96  Aligned_cols=68  Identities=10%  Similarity=-0.038  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhc
Q 010740          426 VSFYNAVISACIKAD---DLMEMERVYKRMKEKHCRPD-SETFSIMTEAYAKEGMNDKVYALEQEKLQMLLEA  494 (502)
Q Consensus       426 ~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  494 (502)
                      ..+--....++++..   ++++++.+|+++...+. .+ ...+..|.-+|.+.|++++|.+.++++++..|++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            334344445555443   34456666666654321 12 2455555666666666666666666666665554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.11  E-value=0.3  Score=33.85  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 010740          324 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTSSTYNNVIEAFSDMGDAKHMEYTFEQMHAEGM  387 (502)
Q Consensus       324 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~  387 (502)
                      +...++.+.+.|+-++..++++.+.+. -.+++...-.+..+|.+.|...++-+++.+..+.|+
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334444444455555555555544442 223444444555555555555555555555555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=1.1  Score=31.08  Aligned_cols=67  Identities=10%  Similarity=0.088  Sum_probs=31.1

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 010740          213 PDVYTYSTLIKACVDAM---RFELIETLYQDMDERSVTPNTVTQNIVLGGYGKAGMFDQMERVLSGMLES  279 (502)
Q Consensus       213 ~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  279 (502)
                      +...+--...-++++..   +.+.++.+++++.+.+..-....+..|.-+|.+.|++++|.+.++.+++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            33444444444444432   23455555555554321111234444455555556666666655555543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.34  E-value=1.2  Score=29.13  Aligned_cols=47  Identities=4%  Similarity=0.089  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010740          373 KHMEYTFEQMHAEGMKADTKTFCCLINGYANAGLFHKVISSVRLASK  419 (502)
Q Consensus       373 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  419 (502)
                      -++.+-++.+...++.|++....+.+++|.+.+++..|.++++-++.
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555554443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=4.5  Score=35.62  Aligned_cols=136  Identities=9%  Similarity=-0.009  Sum_probs=73.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010740          114 TFSDHVLKKQWFQALQVFEMLKEQPFYQPKEGTYMKLLVLL--GKSGQPELARKVFNEMVEEGIEPTPELYTALLAAYCR  191 (502)
Q Consensus       114 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (502)
                      ......+.|++.++.++...+..   . | ...|-..-..-  ......++....+++-..  -+.....-...+..+.+
T Consensus        12 ~a~~a~~~~~~~~~~~~~~~L~d---y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L~~   84 (450)
T d1qsaa1          12 QIKQAWDNRQMDVVEQMMPGLKD---Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR   84 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHSGGGTT---S-T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhhhcC---C-C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence            34556678899988888887743   2 2 23333332222  233455555444443211  01112233445667778


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010740          192 NSLIDEAFVTLNQMKTLPNCQPDVYTYSTLIKACVDAMRFELIETLYQDMDERSVTPNTVTQNIVLGGYGKA  263 (502)
Q Consensus       192 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  263 (502)
                      .++++..+..+   .   ..+.+...-...+.+....|+.+.|...+..+-..|.. ....+..+...+.+.
T Consensus        85 ~~~w~~~~~~~---~---~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          85 REDWRGLLAFS---P---EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (450)
T ss_dssp             TTCHHHHHHHC---C---SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             ccCHHHHHHhc---c---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence            88887655443   1   22455555556777788888888888877776655432 233344444444333

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.66  E-value=1.4  Score=28.77  Aligned_cols=61  Identities=15%  Similarity=0.342  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010740          408 HKVISSVRLASKLQIAENVSFYNAVISACIKADDLMEMERVYKRMKEKHCRPDSETFSIMTE  469 (502)
Q Consensus       408 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l~~  469 (502)
                      -+..+-+..+....+.|.+.+..+.+++|.+.+++.-|.++|+..+.+ +.++...|..++.
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            344444555555566666666667777777777777777776666654 2223444544443