Citrus Sinensis ID: 010830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
Secondary Structure (PSIPRED)
ccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEHHHHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mevmdespdfviknkiipsssstttsptshnphrptrprfpthldapyissSARIICEILAHASSDDIESALactgiiptpdLVHEVLQlsydspssavdffrwagrgqrlspyAWNLMVDVLGKNGRFEQMWNAVRVMkedgvlslptfASIFDsycgagkydeAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKkivdpdgdsFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMkgencfptlKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLlcnnddvdnVFRFFDQmvfhgafpdsltyNMIFECLIKNKRVHEVEKFFHEMIknewqptplNCATAITMlldadepeIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
Flexible Loop (DISEMBL)
mevmdespdfviknkiipsssstttsptshnphrptrprfptHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMiknewqptPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKafynesrsmrdiFDSLERRCKTSQM
Low Complexity Region (SEG)
MEVMDESPDFVIKNKIIpsssstttsptsHNphrptrprfpthLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCnnddvdnvfrffdQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
Disordered region (IsUnstruct)
********************************************DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE********************
Disordered Region (DISOPRED)
*****ESPDFVIKNKIIPS***************************PYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK****
Disordered Region (DISEMBL)
********DFVIKNKIIPS****************TRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
Disordered Region (DISPRO)
****DESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	499	2.2.26 [Sep-21-2011]
Q9FVX2	517	Pentatricopeptide repeat-	yes	no	0.855	0.825	0.273	1e-42
Q9C9A2	510	Pentatricopeptide repeat-	no	no	0.885	0.866	0.281	9e-41
Q9LZP3	599	Pentatricopeptide repeat-	no	no	0.871	0.726	0.242	2e-35
Q9LEQ7	598	Pentatricopeptide repeat-	no	no	0.871	0.727	0.242	1e-34
Q3EAF8	599	Pentatricopeptide repeat-	no	no	0.871	0.726	0.242	1e-34
Q9SSR6	523	Pentatricopeptide repeat-	no	no	0.807	0.770	0.263	3e-33
Q9LN22	537	Pentatricopeptide repeat-	no	no	0.747	0.694	0.235	8e-31
Q9M8W9	508	Pentatricopeptide repeat-	no	no	0.647	0.635	0.269	1e-30
Q9FX35	568	Pentatricopeptide repeat-	no	no	0.825	0.725	0.266	4e-30
Q9S7R4	482	Pentatricopeptide repeat-	no	no	0.769	0.796	0.254	1e-27

>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 217/435 (49%), Gaps = 8/435 (1%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 68  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 246

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 247 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF 346
           PT   +S  +      N    AV  +  M   G  +  ++ ++N++IG  C  + + NV+
Sbjct: 305 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSG--MKADVAVFNSLIGAFCKANRMKNVY 362

Query: 347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 406
           R   +M   G  P+S + N+I   LI+     E    F +MIK   +P        I M 
Sbjct: 363 RVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMF 421

Query: 407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 466
            +  E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    
Sbjct: 422 CEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSG 481

Query: 467 VTMHKLKKAFYNESR 481
           VT  +L++    E R
Sbjct: 482 VTFGRLRQLLIKEER 496

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1

 Score =  168 bits (426), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 224/465 (48%), Gaps = 23/465 (4%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           T + A   S  A  IC+IL   +   +E+ L    +  +P L+ EVL+   ++   A+  
Sbjct: 55  TQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 114

Query: 102 FRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F+WA   +G + +   +N +++ LGK  +F+ +W+ V  MK   +LS  TFA I   Y  
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYAR 174

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA+ +F  M   G + +    N +L  + +  N       F    KK  +PD  S
Sbjct: 175 ARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKS 234

Query: 220 FAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           + ILLEGW +E N   V+E N+   +  E FE  P+ V+AY   +    + K+ +EA++F
Sbjct: 235 YTILLEGWGQELNLLRVDEVNREMKD--EGFE--PD-VVAYGIIINAHCKAKKYEEAIRF 289

Query: 277 LRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
              M+  NC P+   F    N L    KLND   A++ ++     GF L      YNA++
Sbjct: 290 FNEMEQRNCKPSPHIFCSLINGLGSEKKLND---ALEFFERSKSSGFPL--EAPTYNALV 344

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
           G  C +  +++ ++  D+M   G  P++ TY++I   LI+ +R  E  + +  M     +
Sbjct: 345 GAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCE 401

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           PT       + M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +
Sbjct: 402 PTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEY 461

Query: 454 AEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
             EML+  I        +LK+   +E R   + D+   ++R  KT
Sbjct: 462 FNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKT 506

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 429 MQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARN 488

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W  +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K
Sbjct: 489 YEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 549 FAADFHRGGQP--EIFEELAQRAKFS 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 133 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 192

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 193 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 252

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 253 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 311

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 312 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 369

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 370 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 427

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 428 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 487

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct: 488 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 547

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 548 FAADFHRGGQP--EIFEELAQRAKFS 571

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 214/446 (47%), Gaps = 11/446 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ 351
           ++  +    K +    A++ +D MV  G  L P+  +Y  +I        +D V+    +
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query: 352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
           M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct: 429 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 488

Query: 412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
            E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct: 489 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query: 472 LKKAFYNESRSMRDIFDSLERRCKTS 497
               F+   +   +IF+ L +R K S
Sbjct: 549 FAADFHRGGQP--EIFEELAQRAKFS 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 189/414 (45%), Gaps = 11/414 (2%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVL 123
           DD+E  L       + +LV +VL+   +    A  FF WA R      S  +++++V++L
Sbjct: 53  DDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEIL 112

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           G + +F  +W+ +   +E     + +  F  +F +Y  A    EA  +F+ M   G++  
Sbjct: 113 GSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPC 172

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  ++ LL ++C  +   + A EF  + K   + P   +++IL+ GW +  +   A K F
Sbjct: 173 VDDLDQLLHSLC-DKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVF 231

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+ER       +LAY   L  L +   VD   K  + M      P    F+  +    
Sbjct: 232 DEMLERN--CVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYC 289

Query: 301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD 360
              D   A ++ D M    ++L+PN+  +N +I  LC N+ VD+ +   D+M+  GA PD
Sbjct: 290 DAGDVHSAYKVLDRMKR--YDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPD 347

Query: 361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 420
           + TYN I      +  V+   K    M + +  P        + +L+     + A EIW 
Sbjct: 348 TWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWE 407

Query: 421 YILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
            + E    P  A+   ++ GL R  G+L +  R+ E M++  I  Y  T+  L+
Sbjct: 408 GMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLR 461

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1

 Score =  135 bits (340), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 98  AVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           ++ FF WA         SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKR-RASEAQSFFDSLKDRF 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD   +  L+ GW + G + EA K F EM  +      +V  Y   +  L R  Q+  A
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEM--KLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI 333
                 M    C P    F+N + + VK   +   +Q+++ M  +G    P+ I YN +I
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE--PDTITYNFLI 367

Query: 334 GLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 393
              C +++++N  +  + M+      ++ T+N IF  + K + V+   + + +M++ + +
Sbjct: 368 EAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE 427

Query: 394 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 453
           P  +     + M + +   ++ +++   + +  + P   +   L+     +G  ++  + 
Sbjct: 428 PNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKL 487

Query: 454 AEEMLNRRIL-----IYEVTMHKLKKA 475
            +EM+  + L     +YE+ + +L++A
Sbjct: 488 FKEMVEEKCLTPSLSLYEMVLAQLRRA 514

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 45/368 (12%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 69  DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query: 236 ANKTFGEM-------------------VERFEW--------------NPEHVLAYETFLI 262
           A  T  EM                    ++FE+              +P + + Y T + 
Sbjct: 243 ALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMS 302

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-MVGIGFN 321
           +L   K+ +EAL+    MK   C P   F++  +  L +      A +++ + M  +G +
Sbjct: 303 SLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVS 362

Query: 322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AFPDSLTYNMIFECLIKNKRVHEV 380
           +  N   YN++I + C++D+ D       +M       PD  TY  +     K   V EV
Sbjct: 363 I--NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEV 420

Query: 381 EKFFHEMI 388
            K   EM+
Sbjct: 421 GKLLKEMV 428

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 199/451 (44%), Gaps = 39/451 (8%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169

Query: 124 G----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +   V+ +     I   YC   +Y   V  F       
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCE--RYLTHVQKFAKRKRIR 227

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD ++F +L  GW +  + ++
Sbjct: 228 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKK 286

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENC-FPTLKFF 292
           A K   EM+E     PE+   Y   + T  +   VDEA      M  KG     PT K F
Sbjct: 287 AMKLLEEMIEAGH-KPEN-FTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTF 344

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           +  +  L K + +    +L   M+  G   +P++  Y  VI  +C  + VD  ++F D+M
Sbjct: 345 ALMIVALAKNDKAEECFELIGRMISTG--CLPDVSTYKDVIEGMCMAEKVDEAYKFLDEM 402

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
              G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P
Sbjct: 403 SNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDP 462

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV---- 467
           + A   W  + +   +    +   ++ GL +  R  +     EE++N+ + L Y V    
Sbjct: 463 DGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSF 522

Query: 468 -----------TMHKLK---KAFYNESRSMR 484
                       +HK+    K FYN S + R
Sbjct: 523 LMRLSEVGNLKAIHKVSEHMKKFYNHSMARR 553

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 183/401 (45%), Gaps = 17/401 (4%)

Query: 72  LACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNG 127
           L  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +  
Sbjct: 46  LLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLH 105

Query: 128 RFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
               +W+ +  M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N
Sbjct: 106 LHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFN 165

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++L  +C+ + +  +A E    ++     D  ++ ++L GW       +A +   EMVER
Sbjct: 166 TILDVLCKSK-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER 224

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              NP ++  Y T L    R  Q+  A +F   MK  +C   +  ++  +       +  
Sbjct: 225 -GINP-NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIK 282

Query: 307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM 366
            A  ++D M+  G  ++P++  YNA+I +LC  D+V+N    F++MV  G  P+  TYN+
Sbjct: 283 RARNVFDEMIREG--VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340

Query: 367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 426
           +   L         E+    M     +P        I    +  E E A+ ++  +    
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400

Query: 427 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 467
            LP   + N L+ G+        VR+ +E+M+    L+ E+
Sbjct: 401 CLPNLDTYNILISGM-------FVRKRSEDMVVAGKLLLEM 434

Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
224070746	472	predicted protein [Populus trichocarpa]	0.929	0.983	0.627	1e-173
356560843	488	PREDICTED: pentatricopeptide repeat-cont	0.953	0.975	0.604	1e-171
357517439	543	Pentatricopeptide repeat-containing prot	0.925	0.850	0.608	1e-169
255557793	481	pentatricopeptide repeat-containing prot	0.951	0.987	0.590	1e-166
449519571	503	PREDICTED: pentatricopeptide repeat-cont	0.939	0.932	0.571	1e-160
449466215	487	PREDICTED: pentatricopeptide repeat-cont	0.917	0.940	0.576	1e-157
359474755	464	PREDICTED: pentatricopeptide repeat-cont	0.897	0.965	0.571	1e-155
147859123	493	hypothetical protein VITISV_005814 [Viti	0.891	0.902	0.570	1e-150
226494576	467	uncharacterized protein LOC100276413 [Ze	0.871	0.931	0.449	1e-110
223950475	468	unknown [Zea mays] gi|414586333|tpg|DAA3	0.871	0.929	0.446	1e-110

>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/467 (62%), Positives = 370/467 (79%), Gaps = 3/467 (0%)

Query: 31  NPHRPT-RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ 89
           N +R T +P+F +  D+  IS SAR++ EI+   SS DIESAL+ TGI PT D+VHEVL+
Sbjct: 7   NTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLK 66

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT 149
           L +++ +SA+ FFRWAGR  +L+ YAWNLMVD+LGKN  +E MW+AVR MK++ +LS+ T
Sbjct: 67  LCHENATSAIAFFRWAGRTHKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMAT 126

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+F SYC AGK++EA+MSF VM  +GV+QDVV VNSLL+AIC +ENQT++ALEF +++
Sbjct: 127 FVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKI 186

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K  + P+ D+FAILLEGWEKEG+V +A  TFGEMV +  W+PE++ AY++FL TL+RG Q
Sbjct: 187 KLKIPPNADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQ 246

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY 329
            DEA+KFLRVMKG+NC P LKFFSNALD+LVK NDSTHA+ LWDIMVG G  L+PNLIMY
Sbjct: 247 ADEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSG--LLPNLIMY 304

Query: 330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 389
           NA+IGL CNN+DVDN FR  D+MVF+GAFPD LT+N+IF CLIKNK+VH V KFF+EMIK
Sbjct: 305 NAMIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIK 364

Query: 390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 449
           NE  PT  +C+ AI  L+D  +PE+AIEIWNYI+EN +LPL+ SAN LL+G  NLGR+S 
Sbjct: 365 NESPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQ 424

Query: 450 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           VRRFAE+ML+RRI IYE TM KLK +F    R  RD +D L RR K 
Sbjct: 425 VRRFAEDMLDRRINIYESTMKKLKDSFDKTGRHGRDKYDCLIRRWKA 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 290/480 (60%), Positives = 364/480 (75%), Gaps = 4/480 (0%)

Query: 18  PSSSSTTTSPTSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           P  S     P S NP +P +P +FP+HLDAP +SS+AR +C+IL  +S  DIESAL+ +G
Sbjct: 8   PGRSRDLKHP-SKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALSSSG 66

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I+P  +  +EVL+LSY+ PSSAV FFRWAGRG++   + WNLMVD+LGKN  FE MW+AV
Sbjct: 67  IVPEEECTNEVLRLSYNYPSSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAV 126

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++  LSL TFAS+F SYC A +++EAVMSFDVM  +GV+QDVVAVNSLLSAIC ++
Sbjct: 127 RSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSED 186

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQTS  LEF   +K  V PDGD+FAILLEGWEKEGN  +A  TFG+MV    WN ++V A
Sbjct: 187 NQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAA 246

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y+ FL+TL+R   +D+ ++FL+VMK  +CFP LKFF+ ALD LVK ND+ HAV +WD+MV
Sbjct: 247 YDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMV 306

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
                L+PNLIMYNA+IGLLCNN  VD+ FR  D+M FHGAFPDSLTYNMIFECL+KNK+
Sbjct: 307 --SGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKK 364

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
             E E+FF EM+KNEW PT  NCA AI ML D D+PE A EIW+Y++EN + PL+ SAN 
Sbjct: 365 ARETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANA 424

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           LL+GL N+ R ++V+RFAE++L+RRI IY+ TM  LK AFY E RS RD +DSL RR K 
Sbjct: 425 LLIGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/475 (60%), Positives = 368/475 (77%), Gaps = 13/475 (2%)

Query: 31  NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           NP  P    FP+HLD P +SS+AR +C +L   S  DI++AL+ +GI P+ + VHEVL+L
Sbjct: 32  NPKIPKPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKL 91

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           SY+ PSSA+ FFRWAGR ++ S +AWNLMVD+LG+N  FE MW+AVR MK++GVLSLPTF
Sbjct: 92  SYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTF 151

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            S+F SYC AG+ +EAVMSFDVM  + ++++VVAVNSLLSAICR+ENQTS  +EFL   K
Sbjct: 152 VSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLE--K 209

Query: 211 KI-------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           K+       ++ DGDS+AILLEGWEKEGN  +A  TFGEMV R  W+ ++V AY+ FL+T
Sbjct: 210 KVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMT 269

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L+R  Q DE + FL+VMK  +CFP LKFF+NALD+LVK ND+ HA+ LWD+MV  G  L+
Sbjct: 270 LLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSG--LL 327

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNLIMYNA+IGLLCNND++D+ FR  D+MV HGAFPDSLTYNMIFECL+KNK+V E E+F
Sbjct: 328 PNLIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERF 387

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EMIKNEW PT  NCA AI ML + D+P+ A+EIW+Y++E  +  L+ SAN +L+GL  
Sbjct: 388 FAEMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCK 447

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 496
           L RLS+VRRFAEEML++RI IY+ TM+KLK+AFY ESR  S RD FD++ RR K 
Sbjct: 448 LKRLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWKA 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/481 (59%), Positives = 357/481 (74%), Gaps = 6/481 (1%)

Query: 21  SSTTTSPTSHNPHRPTRPRFPTHLDAPYI----SSSARIICEILAHASSDDIESALACTG 76
           S+   SP       P      TH +   I    S SAR + +IL   S  D+ESAL+ TG
Sbjct: 3   STDEYSPHQSQSRTPKPKSKSTHSNGVDIDIDISQSARTLSDILTRVSPHDMESALSSTG 62

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I  T D++HEVL+LSY +P+SAV+FFRWAGR    +PY+WNLMVD+LGKN  FE MW+A+
Sbjct: 63  INLTCDIIHEVLKLSYSNPASAVEFFRWAGRSGTHTPYSWNLMVDLLGKNQLFEAMWDAI 122

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++ VLS+ TFAS+F SYC AG + EA+MSFD+M  +G++QDV+AVNSLLSAIC ++
Sbjct: 123 RSMKQENVLSMATFASVFGSYCKAGSFSEAIMSFDIMDKYGIQQDVIAVNSLLSAICNED 182

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQT +A+EF +R+K  + PDGD++AILLEGWEKEGN  +A   FGEMV    W+PE++ A
Sbjct: 183 NQTIKAVEFFDRIKLKIPPDGDTYAILLEGWEKEGNAAKAKNIFGEMVIHVGWSPENMPA 242

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV 316
           Y  FL  L+R  Q D+A  FLR+MK + C P LKF+S+ALD+L+K ND  HAV +WDIMV
Sbjct: 243 YNAFLNLLVRESQTDDAFDFLRLMKEKGCLPGLKFYSDALDMLLKRNDVLHAVPMWDIMV 302

Query: 317 GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR 376
             G  LMPNL+MYN++IGLLCNN+D+DN FR FD MVFHGAFPD LTY MIF CL+KNK+
Sbjct: 303 DTG--LMPNLLMYNSMIGLLCNNNDIDNAFRLFDDMVFHGAFPDFLTYKMIFRCLVKNKK 360

Query: 377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 436
           V +   FFHEMIKNE  PT L+CA AITM +  D+PE+AIEIWNY++++  LPL+ SAN 
Sbjct: 361 VSQAASFFHEMIKNENPPTHLDCAAAITMFMGGDDPEMAIEIWNYMVDDQELPLDESANA 420

Query: 437 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 496
           LLVGL NLGRLS+V RFAE+ML+RRI I+E TM KLK +FY E RS RD FDSL R+ K 
Sbjct: 421 LLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMAKLKASFYKEGRSSRDRFDSLSRKWKA 480

Query: 497 S 497
           S
Sbjct: 481 S 481

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/476 (57%), Positives = 355/476 (74%), Gaps = 7/476 (1%)

Query: 24  TTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDL 83
           T+SP S N      PRFP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+L
Sbjct: 34  TSSPRSRNS-----PRFPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPEL 88

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           V EVL++SY+SPSSA+ FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ 
Sbjct: 89  VQEVLRVSYNSPSSAIKFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEK 148

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSLPTF S+F SYC AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A 
Sbjct: 149 ILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAW 208

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EF  + K+ +  DG+SFAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLIT
Sbjct: 209 EFFEKHKEKIPLDGESFAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLIT 268

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM 323
           L+RG + ++A+K L  +K   C P LKF SNALD L++ ND+ HA+ LWDI+VG G  L+
Sbjct: 269 LVRGGRSEDAIKVLLKLKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSG--LV 326

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 383
           PNLI+YNA+IGLL  N  +D+ FR  D MVFHGAFP+SLTYN+IF  LIKNK+V EV +F
Sbjct: 327 PNLIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQF 386

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 443
           F EM+KNE  PTP +CA AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL N
Sbjct: 387 FREMVKNECPPTPSSCAAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCN 446

Query: 444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           L RL++VRRFA++M+++RI I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 447 LNRLTEVRRFADDMIDQRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/460 (57%), Positives = 347/460 (75%), Gaps = 2/460 (0%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+LV EVL++SY+SPSSA+
Sbjct: 29  FPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAI 88

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
            FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ +LSLPTF S+F SYC 
Sbjct: 89  KFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCS 148

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A EF  + K+ +  DG+S
Sbjct: 149 AGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGES 208

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           FAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLITL+RG + ++A+K L  
Sbjct: 209 FAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLK 268

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN 339
           +K   C P LKF SNALD L++ ND+ HA+ LWDI+VG G  L+PNLI+YNA+IGLL  N
Sbjct: 269 LKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSG--LVPNLIVYNAIIGLLSEN 326

Query: 340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 399
             +D+ FR  D MVFHGAFP+SLTYN+IF  LIKNK+V EV +FF EM+KNE  PTP +C
Sbjct: 327 SKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSC 386

Query: 400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 459
           A AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL NL RL++VRRFA++M++
Sbjct: 387 AAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMID 446

Query: 460 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 499
           +RI I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 447 QRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Vitis vinifera] gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/450 (57%), Positives = 340/450 (75%), Gaps = 2/450 (0%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           LKFFSNALD+L+K NDSTHA+ LWDIM+  GF  MPNL+MYN +IG+LCN  D DN FRF
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGF--MPNLMMYNTIIGILCNAGDADNAFRF 310

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D
Sbjct: 311 LDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFD 370

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            D+PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E T
Sbjct: 371 GDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHEST 430

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
           M KLK A Y + RS RD  DSL +R K SQ
Sbjct: 431 MEKLKNARYKDGRSARDTCDSLWKRWKVSQ 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/447 (57%), Positives = 338/447 (75%), Gaps = 2/447 (0%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALXAALSATXIPPTPDVVQDVLRLSYSNXSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF 348
           LKFFSNALD+L+K NDSTHA+ LWDIM+  GF  MPNL+MYN +IG+LCN  D DN FRF
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGF--MPNLMMYNTIIGILCNAGDADNAFRF 310

Query: 349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 408
            D+MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D
Sbjct: 311 LDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFD 370

Query: 409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 468
            D+PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E T
Sbjct: 371 GDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHEST 430

Query: 469 MHKLKKAFYNESRSMRDIFDSLERRCK 495
           M KLK A Y + RS RD  DSL +R K
Sbjct: 431 MEKLKNARYKDGRSARDTCDSLWKRWK 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays] gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/443 (44%), Positives = 281/443 (63%), Gaps = 8/443 (1%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 26  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 85

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 86  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 145

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 146 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 205

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 206 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 265

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S A+D++V+  D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     D+M
Sbjct: 266 STAVDLVVRKGDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLLDEM 324

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P
Sbjct: 325 PLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNP 384

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             AI++W  I+E+ I P E SA EL+ GL + GR ++V + A+EM++ R+ +   TM  +
Sbjct: 385 SAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMENM 444

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
           K+AF    R     +D++ RR K
Sbjct: 445 KRAFAKAGRHQS--YDNIARRLK 465

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223950475|gb|ACN29321.1| unknown [Zea mays] gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/443 (44%), Positives = 279/443 (62%), Gaps = 8/443 (1%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 266

Query: 293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM 352
           S A+D++V+  D  +AV +W +MV     L+PN  MY+A+IGL CN   +D+     D+M
Sbjct: 267 STAVDLVVRKGDYLNAVAIWHMMVSEA-GLVPNFSMYSAMIGLHCNAGSIDDALGLLDEM 325

Query: 353 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 412
             +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P
Sbjct: 326 PLNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNP 385

Query: 413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 472
             AI++W  I+E+ I P E SA EL+ GL   GR ++V + A+EM++ R+ +   TM  +
Sbjct: 386 SAAIDVWRCIVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTMENM 445

Query: 473 KKAFYNESRSMRDIFDSLERRCK 495
           K+ F    R     +D++ RR K
Sbjct: 446 KRGFAKAGRHQS--YDNIARRLK 466

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	499
TAIR|locus:2026346	510	AT1G71060 [Arabidopsis thalian	0.873	0.854	0.279	2.1e-38
TAIR|locus:2096099	599	AT3G62470 "AT3G62470" [Arabido	0.871	0.726	0.237	8e-33
TAIR|locus:2185455	598	AT5G14820 "AT5G14820" [Arabido	0.871	0.727	0.237	2.9e-32
TAIR|locus:2096074	599	AT3G62540 "AT3G62540" [Arabido	0.871	0.726	0.237	2.9e-32
TAIR|locus:2035206	523	AT1G52640 [Arabidopsis thalian	0.869	0.829	0.252	1.2e-28
TAIR|locus:2012883	537	AT1G20300 [Arabidopsis thalian	0.739	0.687	0.241	3.6e-26
TAIR|locus:2094394	562	AT3G22670 [Arabidopsis thalian	0.823	0.731	0.235	4.2e-25
TAIR|locus:2204913	491	AT1G02420 "AT1G02420" [Arabido	0.799	0.812	0.231	1.2e-23
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.717	0.598	0.245	2.5e-23
TAIR|locus:2083671	523	AT3G15200 [Arabidopsis thalian	0.869	0.829	0.237	4.8e-23

TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 127/455 (27%), Positives = 213/455 (46%)

Query:    50 SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--R 107
             S  A  IC+IL   +   +E+ L    +  +P L+ EVL+   ++   A+  F+WA   +
Sbjct:    63 SQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQK 122

Query:   108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
             G + +   +N +++ LGK  +F+ +W+ V  MK   +LS  TFA I   Y  A K  EA+
Sbjct:   123 GFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAI 182

Query:   168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
              +F  M   G + +    N +L  + +  N       F    KK  +PD  S+ ILLEGW
Sbjct:   183 GAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGW 242

Query:   228 EKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
              +E N+   ++   EM  E FE  P+ V+AY   +    + K+ +EA++F   M+  NC 
Sbjct:   243 GQELNLLRVDEVNREMKDEGFE--PD-VVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCK 299

Query:   287 PTLKFFS---NALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXX 343
             P+   F    N L    KLND   A++ ++     GF L      YNA++G  C      
Sbjct:   300 PSPHIFCSLINGLGSEKKLND---ALEFFERSKSSGFPL--EAPTYNALVGAYCWSQRME 354

Query:   344 XXXXXXXQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                    +M   G  P++ TY++I   LI+ +R  E  + +  M     +PT       +
Sbjct:   355 DAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMV 411

Query:   404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
              M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +  EML+  I 
Sbjct:   412 RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIR 471

Query:   464 IYEVTMHKLKKAFYNESRS--MRDIFDSLERRCKT 496
                    +LK+   +E R   + D+   ++R  KT
Sbjct:   472 PPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKT 506

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 8.0e-33, P = 8.0e-33
 Identities = 106/446 (23%), Positives = 211/446 (47%)

Query:    56 ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
             +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct:   134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query:   113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
                 +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct:   194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query:   172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             +M  +  +  V  +N LL ++ R +      + F +++K+   P+  ++ +LL GW +  
Sbjct:   254 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLKERFTPNMMTYTVLLNGWCRVR 312

Query:   232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct:   313 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 370

Query:   292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXXXXXQ 351
             ++  +    K +    A++ +D MV  G  L P+  +Y  +I                 +
Sbjct:   371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query:   352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct:   429 MQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARN 488

Query:   412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              E+   +W  +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K
Sbjct:   489 YEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query:   472 LKKAFYNESRSMRDIFDSLERRCKTS 497
                 F+   +   +IF+ L +R K S
Sbjct:   549 FAADFHRGGQP--EIFEELAQRAKFS 572

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 106/446 (23%), Positives = 211/446 (47%)

Query:    56 ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
             +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct:   133 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 192

Query:   113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
                 +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct:   193 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 252

Query:   172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             +M  +  +  V  +N LL ++ R +      + F +++K+   P+  ++ +LL GW +  
Sbjct:   253 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLKERFTPNMMTYTVLLNGWCRVR 311

Query:   232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct:   312 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 369

Query:   292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXXXXXQ 351
             ++  +    K +    A++ +D MV  G  L P+  +Y  +I                 +
Sbjct:   370 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 427

Query:   352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct:   428 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 487

Query:   412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct:   488 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 547

Query:   472 LKKAFYNESRSMRDIFDSLERRCKTS 497
                 F+   +   +IF+ L +R K S
Sbjct:   548 FAADFHRGGQP--EIFEELAQRAKFS 571

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 106/446 (23%), Positives = 212/446 (47%)

Query:    56 ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP 113
             +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct:   134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query:   114 YA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
              +  +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct:   194 ASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query:   172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             +M  +  +  V  +N LL ++ R +      + F +++K+   P+  ++ +LL GW +  
Sbjct:   254 LMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLKERFTPNMMTYTVLLNGWCRVR 312

Query:   232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct:   313 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 370

Query:   292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXXXXXQ 351
             ++  +    K +    A++ +D MV  G  L P+  +Y  +I                 +
Sbjct:   371 YTIMIRDFCKQSSMETAIEYFDDMVDSG--LQPDAAVYTCLITGFGTQKKLDTVYELLKE 428

Query:   352 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 411
             M   G  PD  TYN + + +   K      + +++MI+NE +P+       +     A  
Sbjct:   429 MQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARN 488

Query:   412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 471
              E+   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K
Sbjct:   489 YEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNK 548

Query:   472 LKKAFYNESRSMRDIFDSLERRCKTS 497
                 F+   +   +IF+ L +R K S
Sbjct:   549 FAADFHRGGQP--EIFEELAQRAKFS 572

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 114/451 (25%), Positives = 199/451 (44%)

Query:    56 ICEILA-HAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-- 111
             I  +L+ H +  DD+E  L       + +LV +VL+   +    A  FF WA R      
Sbjct:    41 ISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAH 100

Query:   112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMS 169
             S  +++++V++LG + +F  +W+ +   +E     +S   F  +F +Y  A    EA  +
Sbjct:   101 SLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRA 160

Query:   170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
             F+ M   G++  V  ++ LL ++C +++  + A EF  + K   + P   +++IL+ GW 
Sbjct:   161 FNRMVEFGIKPCVDDLDQLLHSLCDKKH-VNHAQEFFGKAKGFGIVPSAKTYSILVRGWA 219

Query:   229 KEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +  +   A K F EM+ER   N    +LAY   L  L +   VD   K  + M      P
Sbjct:   220 RIRDASGARKVFDEMLER---NCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKP 276

Query:   288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXX 347
                 F+  +       D   A ++ D M    ++L+PN+  +N +I  LC          
Sbjct:   277 DAYSFAIFIHAYCDAGDVHSAYKVLDRMKR--YDLVPNVYTFNHIIKTLCKNEKVDDAYL 334

Query:   348 XXXQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 407
                +M+  GA PD+ TYN I      +  V+   K    M + +  P        + +L+
Sbjct:   335 LLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394

Query:   408 DADEPEIAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYE 466
                  + A EIW  + E    P  A+   ++ GL R  G+L +  R+ E M++  I  Y 
Sbjct:   395 RIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYS 454

Query:   467 VTMHKLKKAFYNESRSMRDIFDSLERRCKTS 497
              T+  L+       +   D+ D L  + + S
Sbjct:   455 TTVEMLRNRLVGWGQM--DVVDVLAGKMERS 483

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.6e-26, P = 3.6e-26
 Identities = 93/385 (24%), Positives = 177/385 (45%)

Query:   101 FFRWA-GRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDS 156
             FF WA  R      SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +   
Sbjct:   136 FFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRR 195

Query:   157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
             Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   +PD
Sbjct:   196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKR-RASEAQSFFDSLKDRFEPD 254

Query:   217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
                +  L+ GW + G + EA K F EM  +      +V  Y   +  L R  Q+  A   
Sbjct:   255 VIVYTNLVRGWCRAGEISEAEKVFKEM--KLAGIEPNVYTYSIVIDALCRCGQISRAHDV 312

Query:   277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL 336
                M    C P    F+N + + VK   +   +Q+++ M  +G    P+ I YN +I   
Sbjct:   313 FADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE--PDTITYNFLIEAH 370

Query:   337 CXXXXXXXXXXXXXQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
             C              M+      ++ T+N IF  + K + V+   + + +M++ + +P  
Sbjct:   371 CRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNT 430

Query:   397 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLSDVRRFAE 455
             +     + M + +   ++ +++   + +  + P   +   LLV +   +G  ++  +  +
Sbjct:   431 VTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP-NVNTYRLLVTMFCGMGHWNNAYKLFK 489

Query:   456 EMLNRRIL-----IYEVTMHKLKKA 475
             EM+  + L     +YE+ + +L++A
Sbjct:   490 EMVEEKCLTPSLSLYEMVLAQLRRA 514

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 101/429 (23%), Positives = 196/429 (45%)

Query:    56 ICEIL--AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
             +C+ L     S +D+   L+   ++ T  LV +VL+   +  + A  FF WA    G   
Sbjct:   105 VCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVH 164

Query:   112 SPYAWNLMVDVLGKNGRFEQMWNAVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
             S + +N MVDVLGK   F+ MW  V  M   +E  +++L T + +      +GKY++AV 
Sbjct:   165 SGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVD 224

Query:   169 SF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             +F ++   +GV+ D +A+NSL+ A+ + EN    A E   ++   + PD  +F IL+ G+
Sbjct:   225 AFLEMEKSYGVKTDTIAMNSLMDALVK-ENSIEHAHEVFLKLFDTIKPDARTFNILIHGF 283

Query:   228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
              K    ++A +   ++++  E+ P+ V+ Y +F+    +        + L  M+   C P
Sbjct:   284 CKARKFDDA-RAMMDLMKVTEFTPD-VVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNP 341

Query:   288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXX 347
              +  ++  +  L K      A+ +++ M   G   +P+   Y+++I +L           
Sbjct:   342 NVVTYTIVMHSLGKSKQVAEALGVYEKMKEDG--CVPDAKFYSSLIHILSKTGRFKDAAE 399

Query:   348 XXXQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AIT 404
                 M   G   D L YN +    + + R     +    M   E +    N  T    + 
Sbjct:   400 IFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLK 459

Query:   405 MLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL 463
             M     + ++   + +++++N +  ++ S   LL+ GL   G++ +   F EE + + ++
Sbjct:   460 MCCHKKKMKLLGILLHHMVKNDV-SIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMV 518

Query:   464 IYEVTMHKL 472
               + T   L
Sbjct:   519 PRDSTCKML 527

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 96/415 (23%), Positives = 187/415 (45%)

Query:    67 DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
             +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+A   RG   S ++ + M+ 
Sbjct:    57 ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLY 116

Query:   122 VLGKNGRFEQMWNA-VRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
             +LG+N +F+Q+W   +   ++D  L  P T   +           + V SF        +
Sbjct:   117 ILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 176

Query:   180 Q-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
               D    N+LL  +C++++ T  A    + +K    PD  +F ILL GW+     EEA  
Sbjct:   177 FFDTACFNALLRTLCQEKSMTD-ARNVYHSLKHQFQPDLQTFNILLSGWKSS---EEAEA 232

Query:   239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
              F EM  +    P+ V+ Y + +    + +++++A K +  M+ E   P +  ++  +  
Sbjct:   233 FFEEMKGK-GLKPD-VVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGG 290

Query:   299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXXXXXQMVFHGAF 358
             L  +     A ++   M   G    P++  YNA I   C             +MV  G  
Sbjct:   291 LGLIGQPDKAREVLKEMKEYG--CYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLS 348

Query:   359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 418
             P++ TYN+ F  L     +    + +  M+ NE  P   +C   I M    ++ ++A+ +
Sbjct:   349 PNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRL 408

Query:   419 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 473
             W  ++  G       ++ LL  L +L ++ +  +   EM+ +      V+  ++K
Sbjct:   409 WEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIK 463

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 91/370 (24%), Positives = 165/370 (44%)

Query:   127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
             G+  +    + +++  G +  + T+  +   YC AG+ + A+   D MS   V  DVV  
Sbjct:   151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTY 207

Query:   186 NSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
             N++L ++C    +  +A+E L+R+ ++   PD  ++ IL+E   ++  V  A K   EM 
Sbjct:   208 NTILRSLC-DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query:   245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
             +R    P+ V+ Y   +  + +  ++DEA+KFL  M    C P +   +  L  +     
Sbjct:   267 DR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query:   305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXXXXXXXQMVFHGAFPDSLTY 364
                A +L   M+  GF+  P+++ +N +I  LC             +M  HG  P+SL+Y
Sbjct:   325 WMDAEKLLADMLRKGFS--PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382

Query:   365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 424
             N +     K K++    ++   M+     P  +   T +T L    + E A+EI N +  
Sbjct:   383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query:   425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 484
              G  P+  + N ++ GL   G+     +  +EM  + +    +T   L      E +   
Sbjct:   443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502

Query:   485 DI--FDSLER 492
              I  F   ER
Sbjct:   503 AIKFFHEFER 512

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2083671 AT3G15200 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 108/455 (23%), Positives = 211/455 (46%)

Query:    52 SARIICEILAH---ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
             SA  +  I+ H   +S + I+  L   GI  T +LV EV+  +      A    +   + 
Sbjct:    77 SALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQ 136

Query:   109 Q-RLSP-YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
                LS    +N ++DVLGK  RFE+       M K DG ++  T+  + + Y  A K DE
Sbjct:   137 SVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDE 196

Query:   166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
             AV  F+     G++ D+VA + LL  +CR ++       F +R ++    D  +  ++L 
Sbjct:   197 AVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREF-GCDIKAMNMILN 255

Query:   226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             GW   GNV EA + + +++   +  P+ V++Y T +  L +  ++ +A++  R M     
Sbjct:   256 GWCVLGNVHEAKRFWKDIIAS-KCRPD-VVSYGTMINALTKKGKLGKAMELYRAMWDTRR 313

Query:   286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCXXXXXXXX 345
              P +K  +N +D L        A++++  +   G +  PN++ YN+++  LC        
Sbjct:   314 NPDVKICNNVIDALCFKKRIPEALEVFREISEKGPD--PNVVTYNSLLKHLCKIRRTEKV 371

Query:   346 XXXXXQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 403
                  +M   G    P+ +T++ + +    ++R  +V+     M KN+ + T        
Sbjct:   372 WELVEEMELKGGSCSPNDVTFSYLLKY---SQRSKDVDIVLERMAKNKCEMTSDLYNLMF 428

Query:   404 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 463
              + +  D+ E   EIW+ +  +G+ P + +    + GL   G++ +   + +EM+++  +
Sbjct:   429 RLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKG-M 487

Query:   464 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
             + E     L     N++++   + D + R   TS+
Sbjct:   488 VPEPRTEML----LNQNKTKPRVEDKMLRSNLTSE 518

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0022626 "cytosolic ribosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	499
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 69/383 (18%), Positives = 144/383 (37%), Gaps = 47/383 (12%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-----GRGQRLSPYAWNLMVDV 122
           ++ A     +I  P L    + +S  + S  +D            G +     +  ++  
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
             K+G+ + M+     M   GV  ++ TF ++ D    AG+  +A  ++ +M    V+ D
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVK---KIVDPDGDSFAILLEGWEKEGNVEEANK 238
            V  N+L+SA C Q     RA + L  +K     +DPD  +   L++     G V+ A +
Sbjct: 542 RVVFNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Query: 239 TFGEMVERF--------------------EW----------NPEHVLAYETFLITLI--- 265
            + +M+  +                    +W            + V   E F   L+   
Sbjct: 601 VY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659

Query: 266 -RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP 324
                +D+A + L+  + +        +S+ +       +   A++L++ +  I   L P
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--LRP 717

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 384
            +   NA+I  LC  + +        +M   G  P+++TY+++     +           
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Query: 385 HEMIKNEWQPTPLNCATAITMLL 407
            +  ++  +P  + C     + L
Sbjct: 778 SQAKEDGIKPNLVMCRCITGLCL 800

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK 373
           P+++ YN +I   C    V+   + F++M   G  P+  TY+++ + L K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           PD +TYN + +   K  +V E  K F+EM K   +P 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           T+ ++ D YC  GK +EA+  F+ M   G++ +V   + L+  +C+
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 395
           TYN + + L K  RV E  + F EM +   +P 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV 353
             L P+++ YN +I  LC    VD      D+M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 4/204 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
               +  +    G+ +EA+   +      +  ++      L  +     +   ALE L +
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 209 VKKIVDPDGDSFAILLEG-WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
              +      + A+L  G   + G+ EEA + + + +E      E   A       L   
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI 327
            + +EAL+ L      N     +   N   + +KL     A++ ++  + +  +    L 
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240

Query: 328 MYNAVIGLLCNNDDVDNVFRFFDQ 351
                  LL      +      ++
Sbjct: 241 NLAL---LLLELGRYEEALEALEK 261

Length = 291

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS 361
           + YN +I  LC    V+     F +M   G  PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	499
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.88
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.57
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.53
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.53
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.5
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.48
KOG2003	840	consensus TPR repeat-containing protein [General f	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
PRK12370	553	invasion protein regulator; Provisional	99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.42
PRK12370	553	invasion protein regulator; Provisional	99.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.38
PF13041	50	PPR_2: PPR repeat family	99.37
PF13041	50	PPR_2: PPR repeat family	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.35
KOG1129	478	consensus TPR repeat-containing protein [General f	99.33
KOG1129	478	consensus TPR repeat-containing protein [General f	99.29
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.22
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.21
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.21
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.2
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.16
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.15
PRK11189	296	lipoprotein NlpI; Provisional	99.14
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.14
PRK11189	296	lipoprotein NlpI; Provisional	99.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.1
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.08
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.07
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.06
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.96
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.93
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.91
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.9
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.88
PRK04841	903	transcriptional regulator MalT; Provisional	98.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.84
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.84
PRK04841	903	transcriptional regulator MalT; Provisional	98.8
PF12854	34	PPR_1: PPR repeat	98.77
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.76
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
PLN02789	320	farnesyltranstransferase	98.72
KOG1125	579	consensus TPR repeat-containing protein [General f	98.72
PF12854	34	PPR_1: PPR repeat	98.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.7
PLN02789	320	farnesyltranstransferase	98.68
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.67
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.57
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.55
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.55
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.55
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.51
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.37
PRK15359	144	type III secretion system chaperone protein SscB;	98.36
PRK15359	144	type III secretion system chaperone protein SscB;	98.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.23
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.21
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.21
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.17
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.17
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.17
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.16
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.14
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.98
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.98
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.9
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.88
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.81
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.8
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.62
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.54
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.52
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.46
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.38
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.36
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.33
KOG0553	304	consensus TPR repeat-containing protein [General f	97.33
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.3
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.29
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.27
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.25
PF12688	120	TPR_5: Tetratrico peptide repeat	97.21
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.21
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.17
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.17
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.15
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.08
PRK10803	263	tol-pal system protein YbgF; Provisional	97.06
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.04
PF12688	120	TPR_5: Tetratrico peptide repeat	97.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.03
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.0
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.94
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.93
KOG1258	577	consensus mRNA processing protein [RNA processing	96.83
KOG0553	304	consensus TPR repeat-containing protein [General f	96.82
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.8
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.79
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.79
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.77
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.77
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.73
PRK10803	263	tol-pal system protein YbgF; Provisional	96.68
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.68
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.58
KOG3941	406	consensus Intermediate in Toll signal transduction	96.58
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.55
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.54
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.53
PF13371	73	TPR_9: Tetratricopeptide repeat	96.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.49
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.46
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.37
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.29
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.22
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.11
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.1
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.04
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.94
PRK15331	165	chaperone protein SicA; Provisional	95.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.79
KOG3941	406	consensus Intermediate in Toll signal transduction	95.75
PRK15331	165	chaperone protein SicA; Provisional	95.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.55
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.47
PF13428	44	TPR_14: Tetratricopeptide repeat	95.4
PF13512	142	TPR_18: Tetratricopeptide repeat	95.29
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.28
KOG1258	577	consensus mRNA processing protein [RNA processing	95.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.23
PF13428	44	TPR_14: Tetratricopeptide repeat	95.23
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.14
KOG1585	308	consensus Protein required for fusion of vesicles	95.0
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.93
PRK11906	458	transcriptional regulator; Provisional	94.92
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.82
KOG4555	175	consensus TPR repeat-containing protein [Function	94.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.76
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.71
PF13512	142	TPR_18: Tetratricopeptide repeat	94.67
PRK11906	458	transcriptional regulator; Provisional	94.32
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.32
KOG4555	175	consensus TPR repeat-containing protein [Function	94.02
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.93
KOG1585	308	consensus Protein required for fusion of vesicles	93.86
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.37
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.86
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.77
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.63
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.06
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.93
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.75
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.72
COG3947	361	Response regulator containing CheY-like receiver a	91.49
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.34
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.33
PF13431	34	TPR_17: Tetratricopeptide repeat	91.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.06
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.99
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.96
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.85
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.77
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.67
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.3
PF13929	292	mRNA_stabil: mRNA stabilisation	90.15
PF13431	34	TPR_17: Tetratricopeptide repeat	90.02
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.97
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	89.73
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.63
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.48
KOG1586	288	consensus Protein required for fusion of vesicles	89.44
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	89.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.82
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.72
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	88.39
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.35
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.2
PF13929	292	mRNA_stabil: mRNA stabilisation	87.97
PRK09687	280	putative lyase; Provisional	87.59
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.74
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.71
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.17
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.91
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.91
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.53
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.31
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.52
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.95
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.92
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.67
COG3947	361	Response regulator containing CheY-like receiver a	81.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.36
PF13762	145	MNE1: Mitochondrial splicing apparatus component	80.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.63
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	80.53
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.3

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.2e-63  Score=507.52  Aligned_cols=427  Identities=16%  Similarity=0.235  Sum_probs=397.4

Q ss_pred             CchhHHHHHHhcCCCC-CHHHHHHHHHhh--cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830           64 SSDDIESALACTGIIP-TPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK  140 (499)
Q Consensus        64 ~~~~l~~~l~~~~~~~-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  140 (499)
                      .+.++...|...|..+ +......++..+  .+..++|.++|+.+..   ||..+|+.++.+|++.|+++.|.++|++|.
T Consensus       388 eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~  464 (1060)
T PLN03218        388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQ  464 (1060)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            3456788888888654 444455555543  5789999999998854   999999999999999999999999999999


Q ss_pred             hCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHH
Q 010830          141 EDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD  218 (499)
Q Consensus       141 ~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  218 (499)
                      +.|. ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+ ++.||..
T Consensus       465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~lf~~M~~~Gv~PD~v  543 (1060)
T PLN03218        465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFGAYGIMRSKNVKPDRV  543 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHH
Confidence            9994 899999999999999999999999999999999999999999999999999 999999999999975 8999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHc-cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD  297 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  297 (499)
                      +|+.+|.+|++.|++++|.++|++|... .++.| |..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            9999999999999999999999999763 47889 788999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 010830          298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV  377 (499)
Q Consensus       298 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  377 (499)
                      +|++.|++++|.++|++|.+.|  +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus       623 ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~  700 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW  700 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830          378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM  457 (499)
Q Consensus       378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  457 (499)
                      ++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus       701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M  780 (1060)
T PLN03218        701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA  780 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCccCHHHHHHHHHHHHh----c------------c------cc---hHHHHHHHHHHHhhc
Q 010830          458 LNRRILIYEVTMHKLKKAFYN----E------------S------RS---MRDIFDSLERRCKTS  497 (499)
Q Consensus       458 ~~~~~~p~~~~~~~ll~~~~~----~------------g------~~---a~~~~~~~~~~~~~~  497 (499)
                      .+.|+.||..+|+.++..|.+    .            |      .+   |..+|++|.+.+..+
T Consensus       781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            999999999999999876542    1            1      12   888999998887665

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-62  Score=501.84  Aligned_cols=411  Identities=14%  Similarity=0.212  Sum_probs=390.0

Q ss_pred             CCHHHHHHHHH--hhcCCchhHHHHHHHhcC-C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010830           79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-G-QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF  154 (499)
Q Consensus        79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li  154 (499)
                      ++...+..++.  ...|++++|+++|++|.+ + ..++...++.++..|.+.|.+++|.++|+.|..   |+..+|+.+|
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL  444 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLM  444 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHH
Confidence            33444444444  236899999999999976 4 467888999999999999999999999999986   8999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCH
Q 010830          155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      .+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++. |+++.|.++|++|.+ ++.||..+|+.+|.+|++.|++
T Consensus       445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999999999999999999999999 999999999999976 8899999999999999999999


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh--CCCCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG--ENCFPTLKFFSNALDILVKLNDSTHAVQL  311 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~  311 (499)
                      ++|.++|++|.+. |+.| |..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.+|.+|++.|++++|.++
T Consensus       524 eeAl~lf~~M~~~-Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        524 AKAFGAYGIMRSK-NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             HHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999986 9999 888999999999999999999999999986  68999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      |+.|.+.|  +.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus       602 f~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G  679 (1060)
T PLN03218        602 YQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG  679 (1060)
T ss_pred             HHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            99999999  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHH
Q 010830          392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK  471 (499)
Q Consensus       392 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  471 (499)
                      +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s  759 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI  759 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccc--hHHHHHHHHHHHhhc
Q 010830          472 LKKAFYNESRS--MRDIFDSLERRCKTS  497 (499)
Q Consensus       472 ll~~~~~~g~~--a~~~~~~~~~~~~~~  497 (499)
                      ++.+|++.|+.  |.+++++|.+.+..+
T Consensus       760 LL~a~~k~G~le~A~~l~~~M~k~Gi~p  787 (1060)
T PLN03218        760 LLVASERKDDADVGLDLLSQAKEDGIKP  787 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999998  999999998876543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.8e-62  Score=495.99  Aligned_cols=407  Identities=17%  Similarity=0.167  Sum_probs=374.6

Q ss_pred             hhHHHHHHhc-CCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 010830           66 DDIESALACT-GIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE  141 (499)
Q Consensus        66 ~~l~~~l~~~-~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  141 (499)
                      .++...|... +..|+..+++.++..+  .++.+.|.+++..+.+ |..||..+||.+++.|++.|+++.|.++|++|.+
T Consensus       107 l~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~  186 (697)
T PLN03081        107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE  186 (697)
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence            3566677665 4789999999999855  5788899999998865 8999999999999999999999999999999975


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHH
Q 010830          142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSF  220 (499)
Q Consensus       142 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~  220 (499)
                         +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++. |..+.+.+++..+.+ +..+|..+|
T Consensus       187 ---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~~~~~l~~~~~~~g~~~d~~~~  262 (697)
T PLN03081        187 ---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSARAGQQLHCCVLKTGVVGDTFVS  262 (697)
T ss_pred             ---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhCCCccceeH
Confidence               588899999999999999999999999999999999999999999999999 999999999988865 889999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830          221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV  300 (499)
Q Consensus       221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  300 (499)
                      +.++++|+++|++++|.++|++|.++      |..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~  336 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS  336 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999654      888999999999999999999999999999999999999999999999


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV  380 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  380 (499)
                      +.|++++|.+++..|.+.|  +.||..+|++||.+|+++|++++|.++|++|.+    ||..+||.||.+|++.|+.++|
T Consensus       337 ~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A  410 (697)
T PLN03081        337 RLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA  410 (697)
T ss_pred             hccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999  899999999999999999999999999999964    7999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      .++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|  
T Consensus       411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~--  488 (697)
T PLN03081        411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA--  488 (697)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence            99999999999999999999999999999999999999999985 699999999999999999999999999998876  


Q ss_pred             cCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830          460 RRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE  491 (499)
Q Consensus       460 ~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~  491 (499)
                       ++.|+..+|+.|+.+|...|+.  |.++++++.
T Consensus       489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence             5778888899998888888877  555555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.3e-59  Score=473.62  Aligned_cols=410  Identities=17%  Similarity=0.191  Sum_probs=388.1

Q ss_pred             hhHHHHHHhcCCCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830           66 DDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG  143 (499)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  143 (499)
                      .+++..+.+.|+.|+..+++.++.  ...|+++.|.++|+.+.   .||..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus       143 ~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g  219 (697)
T PLN03081        143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG  219 (697)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            468888889999999999999998  44789999999999874   5899999999999999999999999999999999


Q ss_pred             C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH
Q 010830          144 V-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI  222 (499)
Q Consensus       144 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  222 (499)
                      . |+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++. |++++|.++|+.|..   +|..+||.
T Consensus       220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~---~~~vt~n~  295 (697)
T PLN03081        220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVFDGMPE---KTTVAWNS  295 (697)
T ss_pred             CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-CCHHHHHHHHHhCCC---CChhHHHH
Confidence            4 899999999999999999999999999999999999999999999999999 999999999999975   79999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL  302 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  302 (499)
                      ++.+|++.|+.++|.++|++|.+. |+.| |..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|++|++.
T Consensus       296 li~~y~~~g~~~eA~~lf~~M~~~-g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~  373 (697)
T PLN03081        296 MLAGYALHGYSEEALCLYYEMRDS-GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW  373 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence            999999999999999999999885 9999 78899999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK  382 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  382 (499)
                      |++++|.++|++|.      .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus       374 G~~~~A~~vf~~m~------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~  447 (697)
T PLN03081        374 GRMEDARNVFDRMP------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE  447 (697)
T ss_pred             CCHHHHHHHHHhCC------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence            99999999999985      368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          383 FFHEMIK-NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       383 ~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      +|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|   ++.|+..+|++|+.+|+..|+++.|..+++++.+  
T Consensus       448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--  522 (697)
T PLN03081        448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--  522 (697)
T ss_pred             HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--
Confidence            9999986 599999999999999999999999999998765   6899999999999999999999999999999974  


Q ss_pred             CccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHHHh
Q 010830          462 ILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERRCK  495 (499)
Q Consensus       462 ~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~  495 (499)
                      +.|+ ..+|..|++.|++.|++  |.+++++|.+++.
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            4554 67999999999999999  9999999988764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.1e-59  Score=485.79  Aligned_cols=408  Identities=15%  Similarity=0.200  Sum_probs=292.1

Q ss_pred             CchhHHHHHHhcCCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830           64 SSDDIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK  140 (499)
Q Consensus        64 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  140 (499)
                      .+..+...+...|..|+..++..++..|  .+..+.|.+++..+.+ +..++...+|+++..|++.|+++.|+++|++|.
T Consensus        69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~  148 (857)
T PLN03077         69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP  148 (857)
T ss_pred             HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC
Confidence            3445777777888888888887777754  3456677777766544 566777777777777777777777777777776


Q ss_pred             hCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHH
Q 010830          141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDS  219 (499)
Q Consensus       141 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~  219 (499)
                      +   +|..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+.. +++..+.+++..+.+ |..||..+
T Consensus       149 ~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~  224 (857)
T PLN03077        149 E---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI-PDLARGREVHAHVVRFGFELDVDV  224 (857)
T ss_pred             C---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc-cchhhHHHHHHHHHHcCCCcccch
Confidence            4   356677777777777777777777777777777777777777777777776 777777777776654 67777777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL  299 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  299 (499)
                      |+.++.+|++.|++++|.++|++|.+.      |..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus       225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        225 VNALITMYVKCGDVVSARLVFDRMPRR------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             HhHHHHHHhcCCCHHHHHHHHhcCCCC------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence            777777777777777777777777543      66677777777777777777777777777777777777777777777


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830          300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE  379 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  379 (499)
                      ++.|+.+.|.+++..|.+.|  +.||..+||+||.+|++.|++++|.++|++|..    ||..+|+.+|.+|++.|++++
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~  372 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDK  372 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHH
Confidence            77777777777777777777  677777777777777777777777777777753    567777777777777777777


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      |+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+
T Consensus       373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  452 (857)
T PLN03077        373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE  452 (857)
T ss_pred             HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777666653


Q ss_pred             cCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830          460 RRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE  491 (499)
Q Consensus       460 ~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~  491 (499)
                          +|..+|+.++.+|++.|+.  |.++|++|.
T Consensus       453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~  482 (857)
T PLN03077        453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQML  482 (857)
T ss_pred             ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                2344555555555555544  444554444

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-58  Score=481.49  Aligned_cols=409  Identities=20%  Similarity=0.215  Sum_probs=315.0

Q ss_pred             hhHHHHHHhcCCCCCHHHHHHHHHhh--cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 010830           66 DDIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED  142 (499)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  142 (499)
                      .++...|...|+.|+..+++.+|..|  .+++..+.+++..+.+ |..||..+||.+|.+|++.|+++.|.++|++|.+ 
T Consensus       172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-  250 (857)
T PLN03077        172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-  250 (857)
T ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence            45677777888999999998888865  3456777777776654 7788888888888888888888888888888865 


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHH
Q 010830          143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFA  221 (499)
Q Consensus       143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~  221 (499)
                        +|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++. |+.+.+.+++..+.+ |+.||..+|+
T Consensus       251 --~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n  327 (857)
T PLN03077        251 --RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCN  327 (857)
T ss_pred             --CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHH
Confidence              366788888888888888888888888888888888888888888888888 888888888888765 7888888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK  301 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  301 (499)
                      .++.+|++.|++++|.++|++|.+.      |..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus       328 ~Li~~y~k~g~~~~A~~vf~~m~~~------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        328 SLIQMYLSLGSWGEAEKVFSRMETK------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCC------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence            8888888888888888888888543      6778888888888888888888888888888888888888888888888


Q ss_pred             cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 010830          302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE  381 (499)
Q Consensus       302 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  381 (499)
                      .|+++.|.++++.+.+.|  +.|+..+||+||.+|++.|++++|.++|++|.+    +|..+|+.+|.+|++.|+.++|.
T Consensus       402 ~g~~~~a~~l~~~~~~~g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~  475 (857)
T PLN03077        402 LGDLDVGVKLHELAERKG--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL  475 (857)
T ss_pred             cchHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence            888888888888888888  788888888888888888888888888888754    56677777777777777777777


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCC------------------------------CChH
Q 010830          382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI------------------------------LPLE  431 (499)
Q Consensus       382 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------------------------~p~~  431 (499)
                      .+|++|.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+                              .+|.
T Consensus       476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~  554 (857)
T PLN03077        476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV  554 (857)
T ss_pred             HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence            77777764 4566666555555544444444444444444333332                              4455


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHH
Q 010830          432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE  491 (499)
Q Consensus       432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~  491 (499)
                      .+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..  |.++|++|.
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~  616 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME  616 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence            666666666666777777777777777777777777777777777777666  666666666

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1.6e-25  Score=238.26  Aligned_cols=385  Identities=14%  Similarity=0.103  Sum_probs=245.8

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      .|+++.|.+.|+.+....+.+..++..+...+.+.|+.++|...|+++.+.++.+...+..++..|...|++++|.++++
T Consensus       512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  591 (899)
T TIGR02917       512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN  591 (899)
T ss_pred             CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44555555555555444444555555555555555555555555555555555455555555555666666666666666


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .+.+.. +.+...|..+...+... |++++|...|+.+.+..+.+...+..+...|.+.|++++|...|+++.+   ..|
T Consensus       592 ~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~  666 (899)
T TIGR02917       592 EAADAA-PDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKP  666 (899)
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Confidence            555432 33455555566666655 6666666666665544444555566666666666666666666666643   245


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA  331 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  331 (499)
                      ++..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.++.+.+.+    |+..++..
T Consensus       667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~  741 (899)
T TIGR02917       667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIK  741 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHH
Confidence            555566666666666666666666666665544 2344555666666666777777777777666643    34455666


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830          332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE  411 (499)
Q Consensus       332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  411 (499)
                      +...+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+..++..+...+...|+
T Consensus       742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence            6667777777777777777766642 2355666667777777777777777777777654 3456667777777777777


Q ss_pred             hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830          412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS  489 (499)
Q Consensus       412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~  489 (499)
                       .+|...++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+.  |.++++.
T Consensus       820 -~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  896 (899)
T TIGR02917       820 -PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDK  896 (899)
T ss_pred             -HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             66777777776643 234455667777788889999999999999887644 788888889999999988  8777777


Q ss_pred             HH
Q 010830          490 LE  491 (499)
Q Consensus       490 ~~  491 (499)
                      |+
T Consensus       897 ~~  898 (899)
T TIGR02917       897 LL  898 (899)
T ss_pred             Hh
Confidence            65

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.2e-24  Score=231.44  Aligned_cols=386  Identities=12%  Similarity=0.085  Sum_probs=191.5

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      |+.+.|.+.|+.+.+..+.+...+..+...+...|++++|.+.|+.+.+.++.+..++..+...+.+.|++++|..++++
T Consensus       479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  558 (899)
T TIGR02917       479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK  558 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444444444443333333444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc
Q 010830          173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE  252 (499)
Q Consensus       173 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~  252 (499)
                      +.+.+ +.+...+..+...+... |++++|..+++.+.+..+.+...|..+...|.+.|++++|.+.|+++.+.   .|+
T Consensus       559 ~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~  633 (899)
T TIGR02917       559 AAELN-PQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL---QPD  633 (899)
T ss_pred             HHHhC-ccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence            43332 22333344444444444 55555555555544444444455555555555555555555555555332   333


Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV  332 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  332 (499)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+..   +.+...+..+
T Consensus       634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~  709 (899)
T TIGR02917       634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELE  709 (899)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHH
Confidence            44445555555555555555555555544432 1234444555555555555555555555555443   3344455555


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh
Q 010830          333 IGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP  412 (499)
Q Consensus       333 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  412 (499)
                      ...+.+.|++++|.+.|+++...+  |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++
T Consensus       710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY  786 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            555555555555555555555432  333444455555555555555555555555532 23444555555555555666


Q ss_pred             hHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHH
Q 010830          413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSL  490 (499)
Q Consensus       413 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~  490 (499)
                      ++|.++|+++.+.. +.+..+++.+...+.+.|+ ++|..+++++.+.. +-+..++..+...+...|+.  |.+.++++
T Consensus       787 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       787 DKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666555533 2344555555555555555 55666665555432 12334445555556666665  66666665


Q ss_pred             HHH
Q 010830          491 ERR  493 (499)
Q Consensus       491 ~~~  493 (499)
                      ++.
T Consensus       864 ~~~  866 (899)
T TIGR02917       864 VNI  866 (899)
T ss_pred             Hhh
Confidence            553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=1.2e-22  Score=194.21  Aligned_cols=310  Identities=13%  Similarity=0.160  Sum_probs=165.4

Q ss_pred             CCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHH
Q 010830           76 GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFA  151 (499)
Q Consensus        76 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~  151 (499)
                      ........+..+.....++++.|...|..+.+..+.+..++..+...+.+.|++++|..+++.+.+.+..+    ..++.
T Consensus        32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~  111 (389)
T PRK11788         32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ  111 (389)
T ss_pred             hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            33344444444444455566666666666655444555566666666666666666666666665543211    23455


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC-----HHHHHHHHHH
Q 010830          152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-----GDSFAILLEG  226 (499)
Q Consensus       152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ll~~  226 (499)
                      .+...|.+.|++++|.++|+++.+.. ..+..+++.+...+... |++++|.+.++.+.+..+.+     ...+..+...
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            55666666666666666666665432 23445555566666655 66666666666554421111     1123444555


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST  306 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  306 (499)
                      +.+.|++++|.+.|+++.+.   .|++...+..+...+.+.|++++|.++|+++.+.+......++..++.+|.+.|+.+
T Consensus       190 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        190 ALARGDLDAARALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            55566666666666665432   344444555555666666666666666666554331111234455555566666666


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---cCCHhHHHHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKF  383 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~  383 (499)
                      +|.+.++.+.+..    |+...+..++..+.+.|++++|..+++++.+.  .|+..+++.++..+..   .|+.+++..+
T Consensus       267 ~A~~~l~~~~~~~----p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~  340 (389)
T PRK11788        267 EGLEFLRRALEEY----PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL  340 (389)
T ss_pred             HHHHHHHHHHHhC----CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH
Confidence            6666666555532    34444455555555666666666666555542  3555555555554443   3355555566


Q ss_pred             HHHHHHCCCCCCh
Q 010830          384 FHEMIKNEWQPTP  396 (499)
Q Consensus       384 ~~~~~~~~~~p~~  396 (499)
                      ++.|.+.++.|++
T Consensus       341 ~~~~~~~~~~~~p  353 (389)
T PRK11788        341 LRDLVGEQLKRKP  353 (389)
T ss_pred             HHHHHHHHHhCCC
Confidence            6555555444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=1.1e-21  Score=187.57  Aligned_cols=304  Identities=12%  Similarity=0.050  Sum_probs=185.3

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR  201 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~  201 (499)
                      .+...|++++|+..|.++.+.++.+..++..+...+...|++++|..+++.+...+..++.                   
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------------------  104 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-------------------  104 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-------------------
Confidence            3455566666666666666666555556666666666666666666666666543211110                   


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                                   ....++..+...|.+.|++++|.++|+++.+.   .|.+..+++.++..+.+.|++++|.+.++.+.
T Consensus       105 -------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (389)
T PRK11788        105 -------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLE  168 (389)
T ss_pred             -------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence                         00123444555555555555555555555432   33344555556666666666666666666555


Q ss_pred             hCCCCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 010830          282 GENCFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA  357 (499)
Q Consensus       282 ~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  357 (499)
                      +.+..++    ...+..+...+.+.|++++|.+.++++.+..   +.+...+..+...|.+.|++++|.++|+++.+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            4432211    1123445556666777777777777766643   23455666677777777777777777777776432


Q ss_pred             CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHH
Q 010830          358 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL  437 (499)
Q Consensus       358 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  437 (499)
                      .....+++.+..+|...|++++|...++++.+..  |+...+..+...+.+.|++++|..+++++.+.  .|+...++.+
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l  321 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL  321 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence            2223456677777777777777777777777653  55555677777777777788888777777663  5667777777


Q ss_pred             HHHHHh---CCChHHHHHHHHHHHHcCCccCHH
Q 010830          438 LVGLRN---LGRLSDVRRFAEEMLNRRILIYEV  467 (499)
Q Consensus       438 l~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~  467 (499)
                      +..+..   .|+.+++..++++|.++++.|++.
T Consensus       322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            766554   457777777777777766665554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=1.7e-18  Score=173.63  Aligned_cols=371  Identities=11%  Similarity=0.027  Sum_probs=279.1

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.+.|+.+++.+....+-+...+..++.+....|++++|...|+++.+..+.+...+..+...+...|++++|.+.
T Consensus        53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~  132 (656)
T PRK15174         53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL  132 (656)
T ss_pred             HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            45799999999998887777777778888888888999999999999999999988888999999999999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW  249 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  249 (499)
                      +++..+.. +.+...+..+...+... |+.++|...++.+....+.+...+..+. .+...|++++|...++.+.+. .-
T Consensus       133 l~~Al~l~-P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~-~~  208 (656)
T PRK15174        133 AEQAWLAF-SGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPF-FA  208 (656)
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc-CC
Confidence            99998752 33466777788888888 9999999999887654444555554443 478899999999999998664 11


Q ss_pred             CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH----HHHHHHHHHhcCCCCCCC
Q 010830          250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH----AVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~  325 (499)
                       +++...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|+.++    |...+++..+..   +.+
T Consensus       209 -~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~---P~~  283 (656)
T PRK15174        209 -LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN---SDN  283 (656)
T ss_pred             -CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC---CCC
Confidence             1233455566788889999999999999988765 3356677788899999999885    899999998864   456


Q ss_pred             HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh-hhHHHHHH
Q 010830          326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP-LNCATAIT  404 (499)
Q Consensus       326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~  404 (499)
                      ...+..+...+.+.|++++|...+++..+... -+...+..+..++.+.|++++|...|+.+.+..  |+. ..+..+..
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~  360 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA  360 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence            78899999999999999999999999887532 234567778888999999999999999998754  443 33444566


Q ss_pred             HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH----HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010830          405 MLLDADEPEIAIEIWNYILENGILPLEASANELL----VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL  472 (499)
Q Consensus       405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  472 (499)
                      ++...|+.++|...|+...+....--...|...+    .++...+..++......++.-.+-..|..+|+.-
T Consensus       361 al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  432 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERR  432 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHH
Confidence            7888999999999999988643221122222222    2233334443333444444444444555555544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-19  Score=166.28  Aligned_cols=355  Identities=13%  Similarity=0.128  Sum_probs=224.2

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      +--.++|..+...+-..|+++.|+.+|+.+.+..+..++.|..+..++...|+.+.|.+.|.+..+.  .|+.....+-+
T Consensus       113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l  190 (966)
T KOG4626|consen  113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL  190 (966)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence            3344566667777777777777777777777666666666777777777777777777666666543  45555544444


Q ss_pred             HHHHccCCchHHHHHHHHH----------------------------------HhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830          190 SAICRQENQTSRALEFLNR----------------------------------VKKIVDPDGDSFAILLEGWEKEGNVEE  235 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~----------------------------------~~~~~~~~~~~~~~ll~~~~~~g~~~~  235 (499)
                      ..+.+..|++++|...|.+                                  ..+-.+.=...|..|...|...+.+++
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence            4444433555555554444                                  433222223445555555555555555


Q ss_pred             HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830          236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDI  314 (499)
Q Consensus       236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~  314 (499)
                      |...|.+..   ...|+....+..+...|...|.++.|+..|++..+..  |+ ...|+.|..++-..|++.+|++.|..
T Consensus       271 Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  271 AVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             HHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence            555555542   3355455555555555555566666666666555433  32 45677777777777888888888877


Q ss_pred             HHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010830          315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ  393 (499)
Q Consensus       315 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  393 (499)
                      .+...   +-.....+.|...|...|.++.|..+|....+  +.|.- ...+.|...|-+.|++++|+..+++.++  +.
T Consensus       346 aL~l~---p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~  418 (966)
T KOG4626|consen  346 ALRLC---PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK  418 (966)
T ss_pred             HHHhC---CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence            77753   33566777777888888888888888877766  34443 4567777778888888888888887776  34


Q ss_pred             CC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH-HHHH
Q 010830          394 PT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE-VTMH  470 (499)
Q Consensus       394 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~  470 (499)
                      |+ ...|+.+...|...|+.+.|.+.+.+.+.  +.|.- ..++.|...|-..|+..+|+.-+++.++.  +||. ..|.
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~c  494 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYC  494 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhh
Confidence            54 44677777788888888888888887776  33432 45666777788888888888888887743  4543 3455


Q ss_pred             HHHHHHHhcccc
Q 010830          471 KLKKAFYNESRS  482 (499)
Q Consensus       471 ~ll~~~~~~g~~  482 (499)
                      .++.++.--.+|
T Consensus       495 Nllh~lq~vcdw  506 (966)
T KOG4626|consen  495 NLLHCLQIVCDW  506 (966)
T ss_pred             HHHHHHHHHhcc
Confidence            555554443333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.88  E-value=1e-17  Score=179.62  Aligned_cols=388  Identities=9%  Similarity=0.019  Sum_probs=259.1

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC--HHHHH------------HHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFA------------SIFD  155 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~------------~li~  155 (499)
                      ...|++++|...|+.+.+..+.+..++..+...+.+.|++++|+..|++..+..+.+  ...|.            ....
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            456889999999998887777788999999999999999999999999988776422  12221            2244


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH--------
Q 010830          156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW--------  227 (499)
Q Consensus       156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~--------  227 (499)
                      .+.+.|++++|++.|++..+.. +.+...+..+-..+... |++++|++.|+++.+..+.+...+..+...|        
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence            6778899999999999988763 34556666777778877 9999999999988765555555554444443        


Q ss_pred             ----------------------------------HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          228 ----------------------------------EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       228 ----------------------------------~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                                                        ...|++++|.+.|++..+.   .|++...+..+...|.+.|++++|
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                              3345555555555555332   444444555555555555555555


Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH---------hHHHHHHHHHHcCCChHH
Q 010830          274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL---------IMYNAVIGLLCNNDDVDN  344 (499)
Q Consensus       274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~  344 (499)
                      +..++++.+.. +.+...+..+...+...++.++|...++.+....  ..++.         ..+..+...+...|+.++
T Consensus       515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~--~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ--WNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh--cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            55555554322 1122222222333444555555555555433221  11111         111233445666677777


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       345 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      |.++++.     .+.+...+..+...+.+.|++++|+..|+..++.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus       592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            7776651     23455566778888899999999999999998864 33677888899999999999999999998876


Q ss_pred             CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--cc---CHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--LI---YEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      .. ..+...+..+..++...|++++|.++++++....-  .|   +...+..+...+...|+.  |++.|+..+.
T Consensus       666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            42 23445566677888899999999999999886532  22   224566667778888888  8888877754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-18  Score=160.30  Aligned_cols=334  Identities=13%  Similarity=0.059  Sum_probs=271.6

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-------------------------
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-------------------------  145 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------------  145 (499)
                      ..|+.++|+.+++.+.+..+.....|..+..++.+.|+.+.|.+.|.+..+.++.                         
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence            3577788888888777766777788888888888888888888877776665531                         


Q ss_pred             ---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCC
Q 010830          146 ---------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP  215 (499)
Q Consensus       146 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~  215 (499)
                               =...|..|...+-..|++..|++-|++.++.  .|+ ...|-.|-..|... +.+++|...|.+...--+.
T Consensus       208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~-~~~d~Avs~Y~rAl~lrpn  284 (966)
T KOG4626|consen  208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA-RIFDRAVSCYLRALNLRPN  284 (966)
T ss_pred             HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH-hcchHHHHHHHHHHhcCCc
Confidence                     1223555555667778888888888887765  444 56778888888888 9999999999888766667


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA  295 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  295 (499)
                      ....+..+...|...|++|-|++.|++..+   +.|.-...|+.|..++-..|++.+|...|.+..... +--....+.|
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL  360 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL  360 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence            788999999999999999999999999954   588778899999999999999999999999887754 2235678889


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 010830          296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKN  374 (499)
Q Consensus       296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~  374 (499)
                      ...|...|.++.|..+|....+-.   +-=...++.|...|-+.|++++|+..|++..+  ++|+- ..|+.+...|-..
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence            999999999999999999998842   33466889999999999999999999999988  77775 6899999999999


Q ss_pred             CCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHH
Q 010830          375 KRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVG  440 (499)
Q Consensus       375 g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~  440 (499)
                      |+.+.|...+.+.+..+  |. ...++.|...|-..|++.+|+.-++...+  ++||. ..|..++.+
T Consensus       436 g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC  499 (966)
T ss_pred             hhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence            99999999999998854  43 56788999999999999999999999987  44543 334444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=2.5e-17  Score=165.85  Aligned_cols=393  Identities=13%  Similarity=0.091  Sum_probs=230.0

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...++++.|+..|+.+.. ..|+...|..+..+|.+.|++++|++.++...+.++.+...|..+..+|...|++++|+..
T Consensus       138 ~~~~~~~~Ai~~y~~al~-~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~  216 (615)
T TIGR00990       138 YRNKDFNKAIKLYSKAIE-CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD  216 (615)
T ss_pred             HHcCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            346899999999998766 4457889999999999999999999999999999888889999999999999999999988


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc----------------------------CCCC-HHHH
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----------------------------VDPD-GDSF  220 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~-~~~~  220 (499)
                      |......+-..+. ....++..+... .....+...++.-...                            ..+. ...+
T Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (615)
T TIGR00990       217 LTASCIIDGFRNE-QSAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ  294 (615)
T ss_pred             HHHHHHhCCCccH-HHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence            8766443211111 111111111000 0001111111000000                            0000 0000


Q ss_pred             HHHHHH---HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHH
Q 010830          221 AILLEG---WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNAL  296 (499)
Q Consensus       221 ~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li  296 (499)
                      ..+...   ....+++++|.+.|+...+.....|.....|+.+...+...|++++|+..|++..+..  |+ ...|..+.
T Consensus       295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la  372 (615)
T TIGR00990       295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRA  372 (615)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence            000000   0123456666666666655322345455566666666666777777777776665543  33 34555666


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 010830          297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKR  376 (499)
Q Consensus       297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  376 (499)
                      ..+...|++++|...++.+++..   +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus       373 ~~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       373 SMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCC
Confidence            66666677777777777666643   3345666666666677777777777777666532 1234455556666666777


Q ss_pred             HhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHH------HHHHHHHHHHhCCChHHH
Q 010830          377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA------SANELLVGLRNLGRLSDV  450 (499)
Q Consensus       377 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a  450 (499)
                      +++|+..|++.++.. +-+...+..+...+...|++++|.+.|+...+..-..+..      .++.....+...|++++|
T Consensus       449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            777777777666532 2235566666666666777777777776666532111110      111112223334667777


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          451 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      .+++++..+.+. -+...+..+...+.+.|+.  |++.|++..+.
T Consensus       528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            777766665431 2334566666666666666  66666665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=1.6e-17  Score=166.81  Aligned_cols=309  Identities=11%  Similarity=0.014  Sum_probs=242.2

Q ss_pred             HHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHH
Q 010830           71 ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF  150 (499)
Q Consensus        71 ~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  150 (499)
                      .+...+-.++......+.....|+.+.|...|+.+....+.+...|..+...+.+.|++++|...|+++.+..+.+...+
T Consensus        68 ~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~  147 (656)
T PRK15174         68 RVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF  147 (656)
T ss_pred             HHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            33333433333333333335689999999999988887888888999999999999999999999999999888888899


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 010830          151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEK  229 (499)
Q Consensus       151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ll~~~~~  229 (499)
                      ..+...+...|++++|...++.+.... +.+...+..+ ..+... |++++|...++.+.+..+ ++...+..+...+.+
T Consensus       148 ~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~  224 (656)
T PRK15174        148 ALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCA  224 (656)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence            999999999999999999999886653 2223333333 346667 999999999998766432 344455566778889


Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE----ALKFLRVMKGENCFPTLKFFSNALDILVKLNDS  305 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~  305 (499)
                      .|++++|.+.+++..+.   .|++...+..+...+...|++++    |+..|++..+.. +.+...+..+...+.+.|++
T Consensus       225 ~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~  300 (656)
T PRK15174        225 VGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQN  300 (656)
T ss_pred             CCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCH
Confidence            99999999999998654   67788889999999999999885    789999888754 33567888889999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHhHHHHHH
Q 010830          306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT-YNMIFECLIKNKRVHEVEKFF  384 (499)
Q Consensus       306 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~  384 (499)
                      ++|...+++..+..   +.+...+..+...|.+.|++++|...|+++.+.  .|+... +..+..++...|+.++|...|
T Consensus       301 ~eA~~~l~~al~l~---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        301 EKAIPLLQQSLATH---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999998864   445677888889999999999999999998874  345433 344566788999999999999


Q ss_pred             HHHHHCC
Q 010830          385 HEMIKNE  391 (499)
Q Consensus       385 ~~~~~~~  391 (499)
                      ++..+..
T Consensus       376 ~~al~~~  382 (656)
T PRK15174        376 EHYIQAR  382 (656)
T ss_pred             HHHHHhC
Confidence            9988763

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=3.2e-17  Score=175.77  Aligned_cols=355  Identities=11%  Similarity=0.052  Sum_probs=195.0

Q ss_pred             HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHH------------HHH
Q 010830          124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNS------------LLS  190 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~------------ll~  190 (499)
                      ...|++++|+..|++..+..+.+..++..+...|.+.|++++|+..|++..+..-.. ....+..            .-.
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            334444555555544444444444444444444555555555555554444321100 0011110            011


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      .+.+. |++++|+..|+++....+.+...+..+...+...|++++|++.|++..+.   .|++...+..+...|. .++.
T Consensus       360 ~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~-~~~~  434 (1157)
T PRK11447        360 AALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYR-QQSP  434 (1157)
T ss_pred             HHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH-hcCH
Confidence            22333 44555555554444433334444444444555555555555555544332   3333333333333322 1223


Q ss_pred             HHHHHHHHHHhhCCCC--------CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCCh
Q 010830          271 DEALKFLRVMKGENCF--------PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDV  342 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  342 (499)
                      ++|+.+++.+......        .....+..+...+...|++++|.+.+++.++..   +-+...+..+...|.+.|++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCH
Confidence            3333333222110000        000112223344556788888888888877754   33566677777778888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHH--------------------------------------------HHHHHhcCCHh
Q 010830          343 DNVFRFFDQMVFHGAFPDSLTYNMI--------------------------------------------FECLIKNKRVH  378 (499)
Q Consensus       343 ~~a~~~~~~m~~~g~~p~~~~~~~l--------------------------------------------l~~~~~~g~~~  378 (499)
                      ++|...++++.+... -+...+..+                                            ...+...|+.+
T Consensus       512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            888888887765321 122222222                                            23344455555


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      +|..+++.     .+.+...+..+...+.+.|++++|.+.|+...+.. +.+...+..+...|...|++++|.+.++...
T Consensus       591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            55555541     23455567778888899999999999999998854 3466788889999999999999999999887


Q ss_pred             HcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830          459 NRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC  494 (499)
Q Consensus       459 ~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~  494 (499)
                      +.. +-+..++..+..++...|+.  |.+.++.+++..
T Consensus       665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            542 12445566777888888888  989998887653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=1.2e-16  Score=163.84  Aligned_cols=392  Identities=9%  Similarity=0.008  Sum_probs=222.5

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.++|++++.......+.+...+..+...+.+.|++++|.++|++..+..+.+...+..++..+...|++++|+..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            44667777777776665445555666777777777777777777777777766666666666777777777777777777


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW  249 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  249 (499)
                      +++..+.. +.+.. +..+...+... |+.++|+..++++.+..+.+...+..+...+...|..+.|.+.++....    
T Consensus       106 l~~~l~~~-P~~~~-~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----  178 (765)
T PRK10049        106 AKQLVSGA-PDKAN-LLALAYVYKRA-GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL----  178 (765)
T ss_pred             HHHHHHhC-CCCHH-HHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----
Confidence            77776551 22333 55555555556 7777777777777665555666666666666667777777766665432    


Q ss_pred             CCch-----HHhHHHHHHHHhc-----CCCH---HHHHHHHHHHhhC-CCCCCHh-hHH----HHHHHHHHcCCHhHHHH
Q 010830          250 NPEH-----VLAYETFLITLIR-----GKQV---DEALKFLRVMKGE-NCFPTLK-FFS----NALDILVKLNDSTHAVQ  310 (499)
Q Consensus       250 ~p~~-----~~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~~~~~~a~~  310 (499)
                      .|+.     ......++.....     .+++   ++|++.++.+.+. ...|+.. .+.    ..+.++...|+.++|+.
T Consensus       179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~  258 (765)
T PRK10049        179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS  258 (765)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            2210     0011122222211     1223   5566666666543 1122211 111    11233445567777777


Q ss_pred             HHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 010830          311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEM  387 (499)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~  387 (499)
                      .|+.+.+.+.. .|+. ....+...|...|++++|+..|+++.+.....   .......+..++...|++++|..+++.+
T Consensus       259 ~~~~ll~~~~~-~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~  336 (765)
T PRK10049        259 EYQRLKAEGQI-IPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT  336 (765)
T ss_pred             HHHHhhccCCC-CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            77776665410 1221 11123556666777777777777665532110   1233444555666777777777777766


Q ss_pred             HHCCC-----------CCC---hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830          388 IKNEW-----------QPT---PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF  453 (499)
Q Consensus       388 ~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  453 (499)
                      .+...           .|+   ...+..+...+...|++++|.++++++.+.. +-+...+..+...+...|++++|++.
T Consensus       337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~  415 (765)
T PRK10049        337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE  415 (765)
T ss_pred             hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            65321           112   1233445556666677777777777766532 33455666666666677777777777


Q ss_pred             HHHHHHcCCccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          454 AEEMLNRRILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       454 ~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      +++..+..  |+ ...+......+.+.|++  |..++++++++
T Consensus       416 l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        416 LKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            77666543  43 34444455556666666  66666665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=2.1e-16  Score=162.12  Aligned_cols=376  Identities=10%  Similarity=0.050  Sum_probs=280.7

Q ss_pred             HhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830           89 QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM  168 (499)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  168 (499)
                      ....+++++|..+|+.+....+.+...+..+...+...|++++|+..+++..+..+.+.. +..+..++...|+.++|+.
T Consensus        59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~  137 (765)
T PRK10049         59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR  137 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence            356799999999999988777888889999999999999999999999999999888888 9999999999999999999


Q ss_pred             HHHHHHhCCCCc-CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCH------HHHHHHHHHHH-----hcCCH---
Q 010830          169 SFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE-----KEGNV---  233 (499)
Q Consensus       169 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---  233 (499)
                      .++++.+.  .| +...+..+...+... +..+.|+..++.+..  .|+.      .....++..+.     ..+++   
T Consensus       138 ~l~~al~~--~P~~~~~~~~la~~l~~~-~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a  212 (765)
T PRK10049        138 AMTQALPR--APQTQQYPTEYVQALRNN-RLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA  212 (765)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHC-CChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence            99999886  45 444555666666666 999999999987664  2321      12222333332     22334   


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHH----HHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYE----TFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHA  308 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a  308 (499)
                      ++|++.++.+.+.....|++...+.    ..+..+...|++++|+..|+++.+.+-. |+. .-..+..+|...|++++|
T Consensus       213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A  291 (765)
T PRK10049        213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA  291 (765)
T ss_pred             HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence            7788888888764344443321211    1134556779999999999999887632 332 222357789999999999


Q ss_pred             HHHHHHHHhcCCCC-CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-----------CCCH---HhHHHHHHHHHh
Q 010830          309 VQLWDIMVGIGFNL-MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-----------FPDS---LTYNMIFECLIK  373 (499)
Q Consensus       309 ~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~  373 (499)
                      +..|+++.+..... .........+..++...|++++|..+++.+.+...           .|+.   ..+..+...+..
T Consensus       292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~  371 (765)
T PRK10049        292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY  371 (765)
T ss_pred             HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence            99999988654100 01134566777788999999999999999987421           1231   244566778889


Q ss_pred             cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830          374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF  453 (499)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  453 (499)
                      .|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. +-+...+..+...+.+.|++++|..+
T Consensus       372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~  449 (765)
T PRK10049        372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVL  449 (765)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999998864 3457788889999999999999999999998844 23355666677788899999999999


Q ss_pred             HHHHHHcCCccCHHHHHHHHHH
Q 010830          454 AEEMLNRRILIYEVTMHKLKKA  475 (499)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~ll~~  475 (499)
                      ++++++.  .|+......+-+.
T Consensus       450 ~~~ll~~--~Pd~~~~~~~~~~  469 (765)
T PRK10049        450 TDDVVAR--EPQDPGVQRLARA  469 (765)
T ss_pred             HHHHHHh--CCCCHHHHHHHHH
Confidence            9999975  4665554444433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=6.4e-15  Score=148.55  Aligned_cols=192  Identities=7%  Similarity=-0.002  Sum_probs=146.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC-----CCCCHHhHHHHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-----AFPDSLTYNMIFE  369 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~  369 (499)
                      .+-++...|+..++++.|+.+...+  .+....+-..+.++|...+++++|..+|+.+....     ..++......|.-
T Consensus       298 rl~aL~~r~r~~~vi~~y~~l~~~~--~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y  375 (822)
T PRK14574        298 RLGALLVRHQTADLIKEYEAMEAEG--YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY  375 (822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence            4567778899999999999999887  44455677888999999999999999999987642     1223344578889


Q ss_pred             HHHhcCCHhHHHHHHHHHHHCCC-----------CCCh---hhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHH
Q 010830          370 CLIKNKRVHEVEKFFHEMIKNEW-----------QPTP---LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN  435 (499)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  435 (499)
                      ++...+++++|..+++.+.+...           .|+.   ..+..++..+...|++.+|++.++++.... +-|.....
T Consensus       376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~  454 (822)
T PRK14574        376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRI  454 (822)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            99999999999999999987311           1221   123456777888999999999999998644 45777888


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHH
Q 010830          436 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSL  490 (499)
Q Consensus       436 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~  490 (499)
                      .+...+...|.+.+|++.++...... +-+..+......++...|++  |..+.+.+
T Consensus       455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        455 ALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            88899999999999999997776542 23456667777888888888  65555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=1.3e-15  Score=153.58  Aligned_cols=376  Identities=10%  Similarity=0.002  Sum_probs=268.3

Q ss_pred             CCCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHH
Q 010830           76 GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI  153 (499)
Q Consensus        76 ~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l  153 (499)
                      ...|++..+..+-.  ...|+++.|++.++.+....+.+...|..+..+|...|++++|+.-|......+..+......+
T Consensus       155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~  234 (615)
T TIGR00990       155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA  234 (615)
T ss_pred             hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            34556554443322  3468999999999999888888899999999999999999999998877765543222222222


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC---------------------------CCCcCH-HHHHHHH--HHHHccCCchHHHH
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMH---------------------------GVEQDV-VAVNSLL--SAICRQENQTSRAL  203 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~~-~~~~~ll--~~~~~~~~~~~~a~  203 (499)
                      +..+........+...++.-...                           ...+.. ..+..+.  ....+..+++++|.
T Consensus       235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~  314 (615)
T TIGR00990       235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA  314 (615)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence            22111111111111111100000                           000000 0000000  00011226788999


Q ss_pred             HHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          204 EFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       204 ~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      ..|+.....   .+.....+..+...+...|++++|...|++..+   ..|.+...|..+...+...|++++|+..|++.
T Consensus       315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  391 (615)
T TIGR00990       315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA  391 (615)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999987652   234566788888999999999999999999965   47877888999999999999999999999998


Q ss_pred             hhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830          281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD  360 (499)
Q Consensus       281 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  360 (499)
                      .+.. +.+..++..+...+...|++++|...|++.++..   +.+...+..+...+.+.|++++|+..|++..+. .+-+
T Consensus       392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~  466 (615)
T TIGR00990       392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEA  466 (615)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC
Confidence            7764 3356788889999999999999999999999864   456788888999999999999999999998874 2235


Q ss_pred             HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh------hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830          361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL------NCATAITMLLDADEPEIAIEIWNYILENGILPLEASA  434 (499)
Q Consensus       361 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  434 (499)
                      ...|+.+...+...|++++|.+.|+..++.....+..      .++..+..+...|++++|.+++++..+.. ..+...+
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~  545 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAV  545 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHH
Confidence            6788889999999999999999999998753221111      11222223344699999999999988754 2344578


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          435 NELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       435 ~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ..+...+.+.|++++|.+.|++..+.
T Consensus       546 ~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       546 ATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            88899999999999999999998765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.3e-14  Score=128.09  Aligned_cols=416  Identities=12%  Similarity=0.160  Sum_probs=277.6

Q ss_pred             HHHHHHHhcCCch---hHHHHHHhcCCCCCHHHHHHHHH-hhc-CCchhHHHHHHHhc----------------------
Q 010830           54 RIICEILAHASSD---DIESALACTGIIPTPDLVHEVLQ-LSY-DSPSSAVDFFRWAG----------------------  106 (499)
Q Consensus        54 ~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~~~l~-~~~-~~~~~a~~~~~~~~----------------------  106 (499)
                      ..++..+......   -++..|.+.|+..++.+-..+++ .|+ ++.+--..-.+|+.                      
T Consensus       120 ~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~  199 (625)
T KOG4422|consen  120 NNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL  199 (625)
T ss_pred             hHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH
Confidence            3455555554433   38889999999999888888777 332 21111111111111                      


Q ss_pred             -CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 010830          107 -RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA  184 (499)
Q Consensus       107 -~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  184 (499)
                       +..+.+..+|..||.++|+--+.+.|.++|.+-.... ..+..+||.+|.+-.-.    ...++..+|....+.||..|
T Consensus       200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~T  275 (625)
T KOG4422|consen  200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFT  275 (625)
T ss_pred             HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHh
Confidence             1234566789999999999999999999998887655 57888899888775433    23788889988888999999


Q ss_pred             HHHHHHHHHccCCchHHH----HHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhHc------cCCCCc
Q 010830          185 VNSLLSAICRQENQTSRA----LEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE-ANKTFGEMVER------FEWNPE  252 (499)
Q Consensus       185 ~~~ll~~~~~~~~~~~~a----~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~------~~~~p~  252 (499)
                      +|+++.+.++. |+++.|    .+++.+|++ |+.|...+|..+|..+++.++..+ +..++.++...      ..+.|.
T Consensus       276 fNalL~c~akf-g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~  354 (625)
T KOG4422|consen  276 FNALLSCAAKF-GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT  354 (625)
T ss_pred             HHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence            99999998888 877654    455666776 899999999999998888887644 44444444322      123455


Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC----CCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGEN----CFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      |..-|...+..|.+..+.+-|.++-.-+....    +.|+   ..-|..+....|.....+.....|+.|.-.-  +-|+
T Consensus       355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~--y~p~  432 (625)
T KOG4422|consen  355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA--YFPH  432 (625)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--ecCC
Confidence            55567778888888888888888776554321    2233   2235567777888888888889999988776  6788


Q ss_pred             HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-C--------HhH-----HHHHH-------
Q 010830          326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-R--------VHE-----VEKFF-------  384 (499)
Q Consensus       326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~--------~~~-----a~~~~-------  384 (499)
                      ..+...++++..-.+.++-.-+++..++..|-.-+...-.-++..+++.. .        +..     |..++       
T Consensus       433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~  512 (625)
T KOG4422|consen  433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP  512 (625)
T ss_pred             chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            88888888988888888888888888888775545544444444444433 1        100     11111       


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHH---HHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          385 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASAN---ELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       385 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      .+|.+..+  .....+.....+.+.|..++|.+++..+.+.+ -.|.....|   .+++.-.+.++...|..+++-|...
T Consensus       513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~  590 (625)
T KOG4422|consen  513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF  590 (625)
T ss_pred             HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            22333333  33345566666778899999999988885433 223333344   5556667778888888888888776


Q ss_pred             CCccCHHHHHHHHHHHHh
Q 010830          461 RILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       461 ~~~p~~~~~~~ll~~~~~  478 (499)
                      +...-...-+.+.+.|.-
T Consensus       591 n~~~~E~La~RI~e~f~i  608 (625)
T KOG4422|consen  591 NLPICEGLAQRIMEDFAI  608 (625)
T ss_pred             CchhhhHHHHHHHHhcCc
Confidence            654444344555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.77  E-value=1.6e-13  Score=138.50  Aligned_cols=374  Identities=10%  Similarity=0.055  Sum_probs=281.2

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.++|+..++......+.+......+...+...|++++|+++|+++.+..+.+...+..++..+...++.++|++.
T Consensus        79 ~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~  158 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ  158 (822)
T ss_pred             HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence            45689999999999876333444555555577888999999999999999999988888888899999999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG--------  241 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--------  241 (499)
                      ++++...  .|+...+..++..+... ++..+|++.++++.+..+.+...+..++....+.|-...|.++..        
T Consensus       159 l~~l~~~--dp~~~~~l~layL~~~~-~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~  235 (822)
T PRK14574        159 ATELAER--DPTVQNYMTLSYLNRAT-DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA  235 (822)
T ss_pred             HHHhccc--CcchHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH
Confidence            9999876  66666665454444444 566569999999877666677777777777666655544444333        


Q ss_pred             ----------------------------------------HHhHccCCCCchHHh----HHHHHHHHhcCCCHHHHHHHH
Q 010830          242 ----------------------------------------EMVERFEWNPEHVLA----YETFLITLIRGKQVDEALKFL  277 (499)
Q Consensus       242 ----------------------------------------~~~~~~~~~p~~~~~----~~~li~~~~~~~~~~~a~~~~  277 (499)
                                                              .+....+-.|+....    .--.+-++...|+..++++.|
T Consensus       236 ~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y  315 (822)
T PRK14574        236 EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY  315 (822)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                                                    322222223422111    223456778889999999999


Q ss_pred             HHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC---CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF---NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       278 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +.|...+......+-..+.++|...+++++|+.+++.+.....   ...++......|..+|...+++++|..+++.+.+
T Consensus       316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            9999988765667888999999999999999999999976431   0133455568899999999999999999999987


Q ss_pred             CCC-----------CCCH---HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830          355 HGA-----------FPDS---LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN  420 (499)
Q Consensus       355 ~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  420 (499)
                      ...           .||.   ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++
T Consensus       396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k  474 (822)
T PRK14574        396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK  474 (822)
T ss_pred             cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            311           1221   124456677889999999999999998764 4578888999999999999999999997


Q ss_pred             HHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHH
Q 010830          421 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH  470 (499)
Q Consensus       421 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  470 (499)
                      ...... +-+..+......++...|++++|..+.+.+.+.  .|+.....
T Consensus       475 ~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~  521 (822)
T PRK14574        475 AVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ  521 (822)
T ss_pred             HHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence            766542 334566677778888999999999999988865  35544333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=1.3e-12  Score=134.77  Aligned_cols=147  Identities=6%  Similarity=-0.068  Sum_probs=79.0

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHH---------------
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF---------------  154 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li---------------  154 (499)
                      ...|+.++|+..++.+.+..+-|...+..+...    +++++|..+|+++.+..+-+..++..+.               
T Consensus        89 l~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e  164 (987)
T PRK09782         89 RHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP  164 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH
Confidence            445677777777776666555555555554222    6666777777777666654444443333               


Q ss_pred             -------------------------HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830          155 -------------------------DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV  209 (499)
Q Consensus       155 -------------------------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~  209 (499)
                                               +.|.+.|++++|++++.++.+.+ ..+......|-.+|....++ +.+..+++. 
T Consensus       165 qAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~-  241 (987)
T PRK09782        165 VARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ-  241 (987)
T ss_pred             HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch-
Confidence                                     34444444455555555544443 12222233333333331122 444444221 


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       210 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                        ..+.+...+..++..|.+.|+.++|.++++++..
T Consensus       242 --~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~  275 (987)
T PRK09782        242 --GIFTDPQSRITYATALAYRGEKARLQHYLIENKP  275 (987)
T ss_pred             --hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence              2234566666777777888888888887777643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=3.3e-13  Score=119.42  Aligned_cols=367  Identities=14%  Similarity=0.165  Sum_probs=266.5

Q ss_pred             CCCCHHHHHHHHH-hh-cCCchhHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHH
Q 010830           77 IIPTPDLVHEVLQ-LS-YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFAS  152 (499)
Q Consensus        77 ~~~~~~~~~~~l~-~~-~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~  152 (499)
                      .+-++.++..+++ .| +...+.|.++++.... ..+.+..+||.+|.+-.-...    .+++.+|.... .||..|||+
T Consensus       203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence            4456777888887 33 5678899999987755 688899999999987655433    68889998888 599999999


Q ss_pred             HHHHHHhcCChhHH----HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---------cCCCCHHH
Q 010830          153 IFDSYCGAGKYDEA----VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---------IVDPDGDS  219 (499)
Q Consensus       153 li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~  219 (499)
                      ++.+..+.|+++.|    .+++.+|++.|+.|...+|..+|..+++..+-...+..++..+..         ..+.|..-
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            99999999987764    678889999999999999999999999984444556666666543         12345667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHc--cCCCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN  294 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  294 (499)
                      |...+..|.+..+.+-|.++..-+...  +...+++   ..-|..+....|+....+....+|+.|.-.-+-|+..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            888999999999999999988777543  1122222   23466778888999999999999999999888899999999


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC-Ch---H----------HHHHHHH-------HHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-DV---D----------NVFRFFD-------QMV  353 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---~----------~a~~~~~-------~m~  353 (499)
                      ++++..-.|.++-.-++|..++..|  ..-+...-.-++..+++.+ +.   +          -|..+++       +|.
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~g--ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r  516 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYG--HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR  516 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999888  4444455555555555554 21   0          1111221       222


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCChhhHH---HHHHHHhccCChhHHHHHHHHHHHCCCCC
Q 010830          354 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPTPLNCA---TAITMLLDADEPEIAIEIWNYILENGILP  429 (499)
Q Consensus       354 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p  429 (499)
                      +  ........+.+.-.+.+.|+.++|.++|..+.+.+- -|-....+   -+++.-.+..+...|..+++.|...++..
T Consensus       517 ~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~  594 (625)
T KOG4422|consen  517 A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI  594 (625)
T ss_pred             h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence            2  234455667777778999999999999999976532 22223334   55666677788999999999887766543


Q ss_pred             hHHHHHHHHHHHHhCCChHHHH
Q 010830          430 LEASANELLVGLRNLGRLSDVR  451 (499)
Q Consensus       430 ~~~~~~~ll~~~~~~g~~~~a~  451 (499)
                      -...-+-++..|.-...-.+++
T Consensus       595 ~E~La~RI~e~f~iNqeq~~~l  616 (625)
T KOG4422|consen  595 CEGLAQRIMEDFAINQEQKEAL  616 (625)
T ss_pred             hhHHHHHHHHhcCcCHHHHHHH
Confidence            3334444555444433333333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=2.8e-12  Score=132.40  Aligned_cols=385  Identities=11%  Similarity=-0.040  Sum_probs=251.3

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM  168 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  168 (499)
                      ...+++++|++.+..+.+..+.+...+..|...|... ++ +.+..+++...+   .+...+..+...|.+.|+.++|.+
T Consensus       193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~  268 (987)
T PRK09782        193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQH  268 (987)
T ss_pred             HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3467888888888887776667777777777777773 66 777777553222   467778888888888888888888


Q ss_pred             HHHHHHhCCCC-cCHHHHHHH------------------------------HHHHHccCCchHH----------------
Q 010830          169 SFDVMSMHGVE-QDVVAVNSL------------------------------LSAICRQENQTSR----------------  201 (499)
Q Consensus       169 ~~~~m~~~g~~-p~~~~~~~l------------------------------l~~~~~~~~~~~~----------------  201 (499)
                      +++++...-.. |...++.-+                              +..+.+. ++++.                
T Consensus       269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  347 (987)
T PRK09782        269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE-GQYDAAQKLLATLPANEMLEE  347 (987)
T ss_pred             HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc-cHHHHHHHHhcCCCcchHHHH
Confidence            88877543111 222221111                              2222222 33333                


Q ss_pred             -----------------------------------------------HHHHHHHHhcc---CCCCHHHHHHHHHHHHhcC
Q 010830          202 -----------------------------------------------ALEFLNRVKKI---VDPDGDSFAILLEGWEKEG  231 (499)
Q Consensus       202 -----------------------------------------------a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g  231 (499)
                                                                     |..+++..-..   ...+.....-++..|.+.+
T Consensus       348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  427 (987)
T PRK09782        348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP  427 (987)
T ss_pred             HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence                                                           33333322110   0112222223444444433


Q ss_pred             C---HHHH----------------------HHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          232 N---VEEA----------------------NKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       232 ~---~~~a----------------------~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .   ..++                      ...++......+..|+  +...|..+..++.. ++.++|+..+.+.....
T Consensus       428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~  506 (987)
T PRK09782        428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ  506 (987)
T ss_pred             cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence            3   1111                      1122222222334455  66677777777776 78888888777766544


Q ss_pred             CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-Hh
Q 010830          285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LT  363 (499)
Q Consensus       285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~  363 (499)
                        |+......+...+...|++++|...|+++...    +|+...+..+...+.+.|+.++|...+++..+..  |+. ..
T Consensus       507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l  578 (987)
T PRK09782        507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL  578 (987)
T ss_pred             --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence              56544444455556889999999999987653    3455556677788888999999999999888753  333 33


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh
Q 010830          364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN  443 (499)
Q Consensus       364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  443 (499)
                      +..+.......|++++|...+++.++..  |+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++..
T Consensus       579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~  655 (987)
T PRK09782        579 YWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWD  655 (987)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3333344456699999999999998754  667788888899999999999999999988754 3355667777788899


Q ss_pred             CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          444 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       444 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      .|++++|+..+++..+.. +-+...+..+-.++...|+.  |...+++.++
T Consensus       656 ~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        656 SGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999999999988754 23567788888889999988  7777777664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=4e-12  Score=122.82  Aligned_cols=365  Identities=12%  Similarity=0.132  Sum_probs=282.1

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.++|.+++..+.+..+.+...|..|..+|-..|+.+++...+-.....++.|...|..+.....+.|.++.|.-+
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            34699999999999999999999999999999999999999999998888888888889999999999999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      |.+.++.. +++...+---...|-+. |+...|..-|.++-.-.+|...     .--.+++.|...++-+.|.+.++...
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99998874 44444444556667777 9999999999998774444322     23335667777888899999998887


Q ss_pred             HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---------------------------HhhHHHHHH
Q 010830          245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---------------------------LKFFSNALD  297 (499)
Q Consensus       245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------------------~~~~~~li~  297 (499)
                      .. +..-.+...+++++..+.+...++.|......+......+|                           ..++ -++-
T Consensus       308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i  385 (895)
T KOG2076|consen  308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI  385 (895)
T ss_pred             hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence            74 33333556789999999999999999999888876222222                           2221 2233


Q ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 010830          298 ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV  377 (499)
Q Consensus       298 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~  377 (499)
                      ++...+..+....+.....+..+...-+...|.-+..+|...|++..|+++|..+.....--+...|-.+..+|...|..
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            44455566666666666666553234467789999999999999999999999999875555678899999999999999


Q ss_pred             hHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH--------HCCCCChHHHHHHHHHHHHhCCChHH
Q 010830          378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--------ENGILPLEASANELLVGLRNLGRLSD  449 (499)
Q Consensus       378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g~~~~  449 (499)
                      ++|.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+.        ..+..|+...--.....+.+.|+.++
T Consensus       466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            99999999998853 2234455567777889999999999998854        23455666666666777888898888


Q ss_pred             HHHHHHHHHH
Q 010830          450 VRRFAEEMLN  459 (499)
Q Consensus       450 a~~~~~~m~~  459 (499)
                      -..+..+|+.
T Consensus       545 fi~t~~~Lv~  554 (895)
T KOG2076|consen  545 FINTASTLVD  554 (895)
T ss_pred             HHHHHHHHHH
Confidence            7666666653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=9e-13  Score=125.01  Aligned_cols=283  Identities=16%  Similarity=0.119  Sum_probs=203.9

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCCchHHHHHHHHHHhccCCCCHH-HH-HHHHHHHHhcCCHHHH
Q 010830          160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-CRQENQTSRALEFLNRVKKIVDPDGD-SF-AILLEGWEKEGNVEEA  236 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~ll~~~~~~g~~~~a  236 (499)
                      .|+++.|++.+....+.+  ++...+-.+..-. .+. |+++.|..++.++.+.. |+.. .. ......+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~-~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQR-GDEARANQHLERAAELA-DNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHCCCHHHH
Confidence            588888887777655432  2223332232323 445 88888888888886533 3332 22 2336778888999999


Q ss_pred             HHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHHcCCHhHHH
Q 010830          237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKLNDSTHAV  309 (499)
Q Consensus       237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~  309 (499)
                      .+.++++.+.   .|++......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...
T Consensus       173 l~~l~~~~~~---~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        173 RHGVDKLLEV---APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHhc---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999888554   6878888888899999999999999999988887654322       13333444444455566666


Q ss_pred             HHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      ++++.+-+.   .+.+......+...+...|+.++|.+++++..+.  .+|..  -.++.+....++.+++.+..+...+
T Consensus       250 ~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        250 RWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHh
Confidence            676666443   3557888888899999999999999999888774  34442  1233444556888999999988887


Q ss_pred             CCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          390 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       390 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      .. +-|...+..+...|.+.+++++|.+.|+...+  ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus       323 ~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        323 QH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            64 34566678888899999999999999998887  468888888888999999999999999887654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.66  E-value=2.4e-12  Score=122.12  Aligned_cols=286  Identities=10%  Similarity=0.081  Sum_probs=176.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHccCCchHHHH
Q 010830          126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRAL  203 (499)
Q Consensus       126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~~a~  203 (499)
                      .|+++.|.+.+....+........|.....+..+.|+++.|.+.+.++.+.  .|+...+.  .....+... |+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~-g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR-NENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-CCHHHHH
Confidence            577777776666554443212223333344446777777777777777654  45543332  223445555 7777777


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH-----hHHHHHHHHhcCCCHHHHHHHHH
Q 010830          204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-----AYETFLITLIRGKQVDEALKFLR  278 (499)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~~~li~~~~~~~~~~~a~~~~~  278 (499)
                      ..++.+.+..+.+......+...|.+.|++++|.+++..+.+.....++...     +|..++.......+.+...++++
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            7777777666666777777777777777777777777777665222222111     33444444444555566666665


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830          279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      .+-+. .+.+......+...+...|+.++|.+++++..+..    +|...  .++.+....++.+++++..+...+.. +
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~----~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ----YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence            54332 23456666677777777777777777777776632    34321  12333345577777777777776642 2


Q ss_pred             CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      -|...+..+...|.+.+++++|.+.|+.+.+.  .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            24445666777777777788887777777764  47777777777777777777777777776543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=1.5e-15  Score=137.58  Aligned_cols=253  Identities=15%  Similarity=0.178  Sum_probs=90.0

Q ss_pred             hhcCCchhHHHHHHHh-cCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830           90 LSYDSPSSAVDFFRWA-GRG-QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      ...|+++.|+++++.. ... .+.|...|..+.......++++.|++.++++...+..+...+..++.. ...+++++|.
T Consensus        19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~   97 (280)
T PF13429_consen   19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEAL   97 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            3457777777777433 333 344555555555666667777777777777777765556666666666 6777777777


Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      ++++...+.  .++...+..++..+... ++++++..+++.+..  ..+.+...|..+...+.+.|+.++|.+.+++..+
T Consensus        98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen   98 KLAEKAYER--DGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             ----------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ccccccccc--ccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777665443  34555566666666666 777777777777654  2345666777777777777777777777777755


Q ss_pred             ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      .   .|+|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|..++++..+..   +.|
T Consensus       175 ~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d  247 (280)
T PF13429_consen  175 L---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---PDD  247 (280)
T ss_dssp             H----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-
T ss_pred             c---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc---ccc
Confidence            4   67667677777777777777777777776665543 3344455666777777777777777777777653   446


Q ss_pred             HhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          326 LIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ......+..++...|+.++|.++..+..
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            6666777777777777777777766554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.65  E-value=4.7e-12  Score=123.19  Aligned_cols=391  Identities=13%  Similarity=0.178  Sum_probs=236.4

Q ss_pred             chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      ...++..+..+-.....|+.+.+.|...|.-.|++..++.+...+.....   .-...|-.+.++|-..|++++|...|.
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34555555555446778888999999999999999999999988887763   234568889999999999999999998


Q ss_pred             HHHhCCCCcCHH--HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHhH
Q 010830          172 VMSMHGVEQDVV--AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG----NVEEANKTFGEMVE  245 (499)
Q Consensus       172 ~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~  245 (499)
                      ...+.  .+|.+  .+--+...+.+. |+++.+...|+.+-+..+.+..+..++...|...+    ..+.|..++.+..+
T Consensus       332 ~s~k~--~~d~~~l~~~GlgQm~i~~-~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~  408 (1018)
T KOG2002|consen  332 ESLKA--DNDNFVLPLVGLGQMYIKR-GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE  408 (1018)
T ss_pred             HHHcc--CCCCccccccchhHHHHHh-chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence            77655  45443  344567788888 99999999999998888888888888888888775    55667777777655


Q ss_pred             ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH----HhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-
Q 010830          246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV----MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF-  320 (499)
Q Consensus       246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-  320 (499)
                      .   .|.|...|-.+...+....-+.. +.+|..    +...+-.+.....|.+.......|+++.|...|+.....-. 
T Consensus       409 ~---~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~  484 (1018)
T KOG2002|consen  409 Q---TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE  484 (1018)
T ss_pred             c---ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence            4   56677788777777776655544 666544    33455556677778887777888888888888877665410 


Q ss_pred             CCCCCH------hHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------------------------------CCCCH
Q 010830          321 NLMPNL------IMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---------------------------------AFPDS  361 (499)
Q Consensus       321 ~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------------~~p~~  361 (499)
                      ...+|.      .+--.+...+-..++++.|.+.|..+.+..                                 ..-+.
T Consensus       485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np  564 (1018)
T KOG2002|consen  485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP  564 (1018)
T ss_pred             hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence            011222      111112222233334444444444433310                                 11122


Q ss_pred             HhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhc------------cCChhHHHHHHHHHHHCCCC
Q 010830          362 LTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLD------------ADEPEIAIEIWNYILENGIL  428 (499)
Q Consensus       362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~  428 (499)
                      ..+..+...+.+...+..|.+-|+...+. ...+|.+....|.+.|.+            .+..++|.++|.+.++.. +
T Consensus       565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p  643 (1018)
T KOG2002|consen  565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P  643 (1018)
T ss_pred             HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence            22222222333333333333333333322 111333333333333321            123455666666555533 2


Q ss_pred             ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830          429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC  494 (499)
Q Consensus       429 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~  494 (499)
                      -|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.+.|..+|++  |+++|+..+++-
T Consensus       644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf  710 (1018)
T KOG2002|consen  644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF  710 (1018)
T ss_pred             chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555556666666666666666665432 1334555666666666666  666666665543

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=1.6e-12  Score=124.10  Aligned_cols=293  Identities=13%  Similarity=0.035  Sum_probs=202.2

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHccCCchHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHH
Q 010830          158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVN-SLLSAICRQENQTSRALEFLNRVKKIVDPD-GDSFAILLEGWEKEGNVEE  235 (499)
Q Consensus       158 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~  235 (499)
                      ...|+++.|.+.+....+.  .|+...+- ......... |+.+.|..++++..+..+.+ ..........+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            3568888888888877655  45443333 334455556 88999999888876533222 2344445778888999999


Q ss_pred             HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH---HHcCCHhHHHHHH
Q 010830          236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLW  312 (499)
Q Consensus       236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~~~~~~a~~~~  312 (499)
                      |.+.++.+.+.   .|++...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++   ...+..+.+.+.+
T Consensus       172 Al~~l~~l~~~---~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       172 ARHGVDKLLEM---APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999765   68788888899999999999999999999998887543322211111222   2222333333344


Q ss_pred             HHHHhcCC-CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          313 DIMVGIGF-NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT---YNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       313 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      ..+.+... ..+.+...+..+...+...|+.++|.+++++..+.  .||...   ...........++.+.+.+.++...
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            44443320 01237888889999999999999999999998885  344432   1122222334577888888888887


Q ss_pred             HCCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          389 KNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       389 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      +.. +-|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            753 2233  456688888999999999999999655444678888888999999999999999999987643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=2.3e-11  Score=117.73  Aligned_cols=357  Identities=12%  Similarity=0.062  Sum_probs=269.2

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      ....+...|++++|.+++.+..+..+.....|.+|...|-..|+.+++...+-..-... +-|...|..+-....+. |.
T Consensus       145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~-~~  222 (895)
T KOG2076|consen  145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL-GN  222 (895)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc-cc
Confidence            33444455999999999999999999999999999999999999999998876554332 44667777777777777 99


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC-chHHhH----HHHHHHHhcCCCHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAY----ETFLITLIRGKQVDEA  273 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~----~~li~~~~~~~~~~~a  273 (499)
                      +++|.-+|.+..+-.+++...+---...|-+.|+...|.+-|.++...   .| .|..-+    -..+..+...++.+.|
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999998877888888888899999999999999999999664   33 333222    2345667777888999


Q ss_pred             HHHHHHHhh-CCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC-------------------------CCCCCCHh
Q 010830          274 LKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-------------------------FNLMPNLI  327 (499)
Q Consensus       274 ~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------------------~~~~~~~~  327 (499)
                      .+.++.... .+-..+...++.++..+.+...++.|......+....                         .++.++..
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            999988765 2334556778888999999999999988887776621                         11222333


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM  405 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  405 (499)
                      ++ -++-++.+.+..+....+...+.+..  +.-+...|.-+..+|...|++.+|..+|..+......-+...|-.+..+
T Consensus       380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence            31 22233444455555555555666555  3335567888999999999999999999999887545567789999999


Q ss_pred             HhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HcCCccCHHHHHHHHHHHH
Q 010830          406 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML--------NRRILIYEVTMHKLKKAFY  477 (499)
Q Consensus       406 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~  477 (499)
                      |...|.+++|.+.|+...... +-+...--.|-..+.+.|+.++|.+.+..+.        ..+..|+....-.....+.
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~  537 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF  537 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence            999999999999999998733 2233334456677889999999999999965        2345566666666677777


Q ss_pred             hcccc
Q 010830          478 NESRS  482 (499)
Q Consensus       478 ~~g~~  482 (499)
                      +.|+.
T Consensus       538 ~~gk~  542 (895)
T KOG2076|consen  538 QVGKR  542 (895)
T ss_pred             HhhhH
Confidence            78876

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.6e-12  Score=116.00  Aligned_cols=214  Identities=11%  Similarity=0.057  Sum_probs=151.5

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 010830          268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR  347 (499)
Q Consensus       268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  347 (499)
                      |++++|.+.|++.....-.-....|+. --.+-..|++++|.+.|-.+..-   +.-++.+.-.+...|-...+...|++
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            566677666666655443222233332 22345667777777777665443   23356666667777777777888888


Q ss_pred             HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCC
Q 010830          348 FFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI  427 (499)
Q Consensus       348 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  427 (499)
                      ++-+.... ++-|......|...|-+.|+-..|.+.+-+--+ -++.+..+...|...|....-+++++.+|++..-  +
T Consensus       580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i  655 (840)
T KOG2003|consen  580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I  655 (840)
T ss_pred             HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence            77666553 445667778888888888888888876654433 3566788888888888888889999999987654  7


Q ss_pred             CChHHHHHHHHHH-HHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc-hHHHHHHH
Q 010830          428 LPLEASANELLVG-LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS-MRDIFDSL  490 (499)
Q Consensus       428 ~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-a~~~~~~~  490 (499)
                      .|+..-|..++.. +.+.|++++|++++++.-.+ ++-|...+..|++.+...|-. +.+..+.+
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~kl  719 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKL  719 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHHH
Confidence            8999999988855 56779999999999988654 566888889999998888866 55444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=8.3e-11  Score=105.79  Aligned_cols=392  Identities=15%  Similarity=0.069  Sum_probs=282.7

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      .++...|..+|+.+......+...|-..+..-.+++++..|..++++....-+--...|--.+..=-..|++..|.++|+
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45677899999999888888999999999999999999999999998876643233456666666667899999999999


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .-.+-  .|+...|++.|..=.+. +.++.|..+++...- +.|++.+|.-....=.+.|++..+..+|+...+.+|-.-
T Consensus       166 rW~~w--~P~eqaW~sfI~fElRy-keieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~  241 (677)
T KOG1915|consen  166 RWMEW--EPDEQAWLSFIKFELRY-KEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE  241 (677)
T ss_pred             HHHcC--CCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence            88765  89999999999998888 999999999998754 238888888888888889999999999988877655433


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-------------------------------------------CCCC
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-------------------------------------------CFPT  288 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------------------------------~~p~  288 (499)
                      .+...+.++...-.+.+.++.|.-+|+-..+.-                                           -+-|
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n  321 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN  321 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence            233344444444444455555555554332211                                           1123


Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH-------hHHHHHHHH---HHcCCChHHHHHHHHHHHHCCCC
Q 010830          289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL-------IMYNAVIGL---LCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       289 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      -.+|-..++.-...|+.+...++|+..+..   ++|-.       ..|--+=.+   -....+.+.+.++|+...+. ++
T Consensus       322 YDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP  397 (677)
T KOG1915|consen  322 YDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP  397 (677)
T ss_pred             chHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence            344445556666678888888888888765   45521       112111111   13456778888888877772 22


Q ss_pred             CCHHhHHHHH----HHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830          359 PDSLTYNMIF----ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA  434 (499)
Q Consensus       359 p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  434 (499)
                      -...||..+=    .--.++.++..|.+++...+  |..|-..+|...|..-.+.++++.+..++++.++.+ +-|..+|
T Consensus       398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W  474 (677)
T KOG1915|consen  398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW  474 (677)
T ss_pred             cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence            2334444332    23346678888888888776  566888889999988889999999999999999866 3466788


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcC-CccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830          435 NELLVGLRNLGRLSDVRRFAEEMLNRR-ILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC  494 (499)
Q Consensus       435 ~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~  494 (499)
                      ......-...|+.+.|..+|+-.++.. +......|...|.-=...|..  |+.+++.++++-
T Consensus       475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            887777778899999999999888653 334456677777777777877  999999988763

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=5e-15  Score=134.23  Aligned_cols=259  Identities=16%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      ...+.+.|++++|+++++......-.|+...|-.++..++...++.+.|...++++....+-+...+..++.. ...+++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~   93 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP   93 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            4444445555555555533222211233333333333222222445555555554443222233344444444 355555


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHHcCCHhHHHHHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLW  312 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~  312 (499)
                      ++|.++++...++   .+ +...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|+..+
T Consensus        94 ~~A~~~~~~~~~~---~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   94 EEALKLAEKAYER---DG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccc---cc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555555444332   11 23344455555555555555555555544321 2234444555555555555555555555


Q ss_pred             HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010830          313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW  392 (499)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  392 (499)
                      ++..+..   +.|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++..+.. 
T Consensus       170 ~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  170 RKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            5555542   2234555555555555555555555555554431 2233444555555555555555555555555432 


Q ss_pred             CCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830          393 QPTPLNCATAITMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       393 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  422 (499)
                      +.|..+...+..++...|+.++|.++.++.
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             TT-HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            224445555555555555555555555443

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=7.7e-12  Score=119.34  Aligned_cols=289  Identities=10%  Similarity=0.024  Sum_probs=162.6

Q ss_pred             HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHccCCchHH
Q 010830          124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQENQTSR  201 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~  201 (499)
                      ...|+++.|.+.+....+........+-....++.+.|+++.|.+.+.+..+.  .|+..  ..-.....+... |+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~-~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQ-NELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHC-CCHHH
Confidence            34466777766666655554333344445555666667777777777666543  23332  222234455555 66777


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHH---HHHHHHhcCCCHHHHHHHHH
Q 010830          202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE---TFLITLIRGKQVDEALKFLR  278 (499)
Q Consensus       202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---~li~~~~~~~~~~~a~~~~~  278 (499)
                      |...++.+.+..+.+..++..+...|.+.|++++|.+.+..+.+. +..++.. ...   .........+..+++.+.+.
T Consensus       172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~-~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEE-FADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHH-HHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            777777666655556666667777777777777777777777654 3222111 101   11111122222333333333


Q ss_pred             HHhhCC---CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhH---HHHHHHHHHcCCChHHHHHHHHHH
Q 010830          279 VMKGEN---CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIM---YNAVIGLLCNNDDVDNVFRFFDQM  352 (499)
Q Consensus       279 ~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m  352 (499)
                      .+.+..   .+.+...+..+...+...|+.++|.+++++..+..    ||...   ...........++.+.+.+.++..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence            333222   11255666666777777777777777777777653    23221   111122223346667777777666


Q ss_pred             HHCCCCCCH---HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830          353 VFHGAFPDS---LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       353 ~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                      .+.  .|+.   ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus       326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            653  2333   34556667777777888888777753333345777777777777777788887877777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=8.2e-12  Score=106.82  Aligned_cols=293  Identities=11%  Similarity=0.107  Sum_probs=201.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHH
Q 010830          126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF  205 (499)
Q Consensus       126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~  205 (499)
                      +.+.++|.++|-+|.+.+..+..+--+|.+.|.+.|..|.|+++.+.+.+   .||... +-             +.   
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~-~q-------------r~---  107 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTF-EQ-------------RL---  107 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCch-HH-------------HH---
Confidence            45777778888777777666666677777777777777777777777765   233211 11             01   


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 010830          206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC  285 (499)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  285 (499)
                                  ...-.|..-|...|-+|.|+++|..+.+...+.+   .....|+..|-+..+|++|++.-+++.+.+-
T Consensus       108 ------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~---~AlqqLl~IYQ~treW~KAId~A~~L~k~~~  172 (389)
T COG2956         108 ------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAE---GALQQLLNIYQATREWEKAIDVAERLVKLGG  172 (389)
T ss_pred             ------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence                        1122344557777888888888888876422222   3567788888888888888888888777664


Q ss_pred             CCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830          286 FPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS  361 (499)
Q Consensus       286 ~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  361 (499)
                      .+.    ...|..+...+....+.+.|..++.+..+.+   +..+..--.+.+.+...|++++|.+.++...+.+..--.
T Consensus       173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            433    2345556666666788889999999888865   344555556667888999999999999999886554445


Q ss_pred             HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHH
Q 010830          362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL  441 (499)
Q Consensus       362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  441 (499)
                      .+...|..+|.+.|+.++....+..+.+....++  .-..+...-......+.|...+.+-..  -.|+...+..+|..-
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~  325 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH  325 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence            6778888999999999999999999888643333  333444444444556666666555444  268888888888774


Q ss_pred             Hh---CCChHHHHHHHHHHHHc
Q 010830          442 RN---LGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       442 ~~---~g~~~~a~~~~~~m~~~  460 (499)
                      ..   .|...+-..+++.|+..
T Consensus       326 l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         326 LADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             hccccccchhhhHHHHHHHHHH
Confidence            43   35577777788888754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=6.3e-12  Score=117.76  Aligned_cols=282  Identities=9%  Similarity=0.058  Sum_probs=117.9

Q ss_pred             CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      +.++|...|........-+......+.++|...+++++|.++|+.+++..   +.+.++|.+.+-.+-+.-...-   +-
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~---La  410 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY---LA  410 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH---HH
Confidence            34455555554322222233344444455555555555555555555544   2344444444433222111100   00


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      +.+.+.. +-.+.+|-++-.+|.-+ ++.+.|++.|++...-.+....+|+.+..-+.....+|.|..-|+..   .++.
T Consensus       411 q~Li~~~-~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A---l~~~  485 (638)
T KOG1126|consen  411 QDLIDTD-PNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA---LGVD  485 (638)
T ss_pred             HHHHhhC-CCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh---hcCC
Confidence            1111110 22334444444444444 44444544444444333334444444444444444444444444444   2334


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      |.+-.+|.-+.-.|.+.++++.|+-.|++..+.+ +-+......+...+.+.|+.++|++++++....+   +.|...--
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---~kn~l~~~  561 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---PKNPLCKY  561 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---CCCchhHH
Confidence            4333444444444444444444444444444332 1123333333444444444444444444444432   22333333


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      ..+..+...+++++|+..++++++  +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            333334444444444444444444  22222 3333344444444444444444444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1e-10  Score=104.97  Aligned_cols=355  Identities=12%  Similarity=0.081  Sum_probs=233.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHH-----------------------------HHHHHH
Q 010830          108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-----------------------------IFDSYC  158 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----------------------------li~~~~  158 (499)
                      +...|...+-.....+.+.|....|++.|......-+-.-..|..                             +..++-
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~  238 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ  238 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            344455555555556666777777777776665543222122211                             223444


Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHH
Q 010830          159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEE  235 (499)
Q Consensus       159 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~  235 (499)
                      .....+++.+-.+.+...|+.-+...-+....+.... .+++.|+.+|+.+.+..+   .|..+|..++-.--.+..+.-
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~  317 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY  317 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence            5556777777777777777544443333333333344 888889999988877543   256677766544332222221


Q ss_pred             HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830          236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM  315 (499)
Q Consensus       236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  315 (499)
                      --+....+   ....|   .|..++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++..
T Consensus       318 LA~~v~~i---dKyR~---ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  318 LAQNVSNI---DKYRP---ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHHh---ccCCc---cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            11111122   24445   377788888888889999999999888765 224567778888899999999999999998


Q ss_pred             HhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010830          316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT  395 (499)
Q Consensus       316 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~  395 (499)
                      ++-+   +.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|......|- .+
T Consensus       391 vdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te  465 (559)
T KOG1155|consen  391 VDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE  465 (559)
T ss_pred             HhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence            8864   6688899999999999999889999998888742 23678899999999999999999999999888763 35


Q ss_pred             hhhHHHHHHHHhccCChhHHHHHHHHHHH----CCCCChHHHHHH--HHHHHHhCCChHHHHHHHHHHHHcCCccCHHHH
Q 010830          396 PLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLEASANE--LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM  469 (499)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  469 (499)
                      ...+..|.+.|-+.++.++|.+.|+..++    .|..-+......  |..-+.+.+++++|.........-  .+...--
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea  543 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA  543 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence            67788888999899999999888877664    333322222222  334567788888887766555433  3344444


Q ss_pred             HHHHHHHH
Q 010830          470 HKLKKAFY  477 (499)
Q Consensus       470 ~~ll~~~~  477 (499)
                      ..|++.+.
T Consensus       544 k~LlReir  551 (559)
T KOG1155|consen  544 KALLREIR  551 (559)
T ss_pred             HHHHHHHH
Confidence            44444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.6e-11  Score=118.12  Aligned_cols=376  Identities=11%  Similarity=0.023  Sum_probs=232.1

Q ss_pred             hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC----ChhH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----KYDE  165 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~  165 (499)
                      ..|+.+.|...|.......+.+ +..+--+...+.+.|+++.+...|+...+..+.+..+...|...|+..+    ..+.
T Consensus       319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~  398 (1018)
T KOG2002|consen  319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK  398 (1018)
T ss_pred             hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence            3589999999998776644444 5666678888999999999999999998888777788888888777775    5566


Q ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830          166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGNVEEANKTF  240 (499)
Q Consensus       166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  240 (499)
                      |..++.+..+.- ..|...|-.+-..+-.  ++...++.+|....     .+..+.....|.+...+...|+++.|...|
T Consensus       399 a~~~l~K~~~~~-~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f  475 (1018)
T KOG2002|consen  399 ASNVLGKVLEQT-PVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF  475 (1018)
T ss_pred             HHHHHHHHHhcc-cccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence            666666655432 3455556555555543  34444465555532     133456666777777777777777777777


Q ss_pred             HHHhHcc--CCCCc-----hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-----------------------------
Q 010830          241 GEMVERF--EWNPE-----HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-----------------------------  284 (499)
Q Consensus       241 ~~~~~~~--~~~p~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------------  284 (499)
                      .......  ..+++     ++.+-..+...+-..++.+.|.++|..+.+..                             
T Consensus       476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~  555 (1018)
T KOG2002|consen  476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKD  555 (1018)
T ss_pred             HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHH
Confidence            6664430  01121     11122223444444455555555555544432                             


Q ss_pred             ----CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc------------CCChHHHHHH
Q 010830          285 ----CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN------------NDDVDNVFRF  348 (499)
Q Consensus       285 ----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~~~~~~a~~~  348 (499)
                          ..-+...++.+-..+.+...+..|.+-|..+.+.-. ..+|..+.-+|...|..            .+..++|+++
T Consensus       556 ~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~-~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~  634 (1018)
T KOG2002|consen  556 ALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS-TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL  634 (1018)
T ss_pred             HHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc-cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence                011222223333344555555555554544444321 12455554444444331            2345678888


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-CCC
Q 010830          349 FDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGI  427 (499)
Q Consensus       349 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~  427 (499)
                      |.+..+.. +-|...-|.+.-.++..|++.+|..+|....+... -...+|..+.++|..+|++-.|+++|+...+ ..-
T Consensus       635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~  712 (1018)
T KOG2002|consen  635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK  712 (1018)
T ss_pred             HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88777652 23566667777778888888888888888877643 2445777888888888888888888887654 444


Q ss_pred             CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 010830          428 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL  472 (499)
Q Consensus       428 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  472 (499)
                      .-+..+.+.|.+++.+.|++.+|.+.+.........-....||..
T Consensus       713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            556677788888888888888888887777655433333444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=3.5e-11  Score=103.03  Aligned_cols=301  Identities=14%  Similarity=0.139  Sum_probs=220.0

Q ss_pred             CCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHH
Q 010830           79 PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIF  154 (499)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li  154 (499)
                      .+..-+..+=-+..+.++.|.++|-.+.+..+-+..+--+|.+.|.+.|.+|.|+++.+.+.++.-.+    ......|.
T Consensus        35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~  114 (389)
T COG2956          35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG  114 (389)
T ss_pred             ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34444444433667899999999999988888888888999999999999999999999888775222    23566778


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCC----HHHHHHHHHHHHh
Q 010830          155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD----GDSFAILLEGWEK  229 (499)
Q Consensus       155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~ll~~~~~  229 (499)
                      +-|...|-+|.|+++|..+.+.| ..-......|+..|-.. .+|++|.++-+++.+ +..+.    ...|..+...+..
T Consensus       115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            88999999999999999998755 44566777888888888 999999999887765 22222    2346667777777


Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV  309 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~  309 (499)
                      ..+.+.|..++.+..+.   .|..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++..
T Consensus       193 ~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         193 SSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             hhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            88888999888888554   665665666677888888999999999998888775545567778888889999999988


Q ss_pred             HHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh---cCCHhHHHHHHHH
Q 010830          310 QLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKFFHE  386 (499)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~  386 (499)
                      ..+..+.+..    +....-..+-..-....-.+.|...+.+-..  -+|+...+..+|..-..   .|...+-..+++.
T Consensus       270 ~fL~~~~~~~----~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~  343 (389)
T COG2956         270 NFLRRAMETN----TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD  343 (389)
T ss_pred             HHHHHHHHcc----CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence            8888887754    3444444444444444445555555544443  25888888888876543   3445666667777


Q ss_pred             HHHC
Q 010830          387 MIKN  390 (499)
Q Consensus       387 ~~~~  390 (499)
                      |...
T Consensus       344 mvge  347 (389)
T COG2956         344 MVGE  347 (389)
T ss_pred             HHHH
Confidence            7654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.57  E-value=4e-11  Score=105.87  Aligned_cols=286  Identities=17%  Similarity=0.109  Sum_probs=204.9

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830          160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANK  238 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~  238 (499)
                      .|+|..|+++..+-.+.+ +-....|..-..+.-.. |+.+.+-.++.+..+ ...++...+-+........|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            578888888887766665 22233444444555555 888888888887766 245566677777777888888888888


Q ss_pred             HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHHcCCHhHHHHH
Q 010830          239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKLNDSTHAVQL  311 (499)
Q Consensus       239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~  311 (499)
                      -++++.+.   .|.++........+|.+.|++.....++..|.+.|.--+.       .+|..+++-....+..+.-.+.
T Consensus       175 ~v~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         175 NVDQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             HHHHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            88887543   6666777888888888888888888888888888766553       3566666666666666666666


Q ss_pred             HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      |+..-..   .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+    -...-.+.+-++...-++..+.-.+..
T Consensus       252 W~~~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         252 WKNQPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             HHhccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            6665544   345667777788888888888888888888887766665    122234556677776666666665542


Q ss_pred             CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          392 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       392 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                       +-++..+.+|...|.+.+.+.+|.+.|+...+  ..|+..+|+.+..++.+.|+..+|.++.++....
T Consensus       325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             23446778888888888888888888886665  5678888888888888888888888888876643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.57  E-value=1.4e-09  Score=101.87  Aligned_cols=377  Identities=10%  Similarity=0.019  Sum_probs=272.5

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH----HhCCC-C----------------CH----
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGV-L----------------SL----  147 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~-~----------------~~----  147 (499)
                      ..++.|..+++.+.+..+.+...|.+-...--++|+.+...+++++-    ...|+ .                ++    
T Consensus       420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ  499 (913)
T KOG0495|consen  420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ  499 (913)
T ss_pred             HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence            34567777888777777778888877777777777777777666433    22231 1                12    


Q ss_pred             -----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHh
Q 010830          148 -----------------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK  210 (499)
Q Consensus       148 -----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~  210 (499)
                                       .||..-.+.|.+.+.++-|..+|....+-- .-+...|......--.. |..+....+|++..
T Consensus       500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h-gt~Esl~Allqkav  577 (913)
T KOG0495|consen  500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH-GTRESLEALLQKAV  577 (913)
T ss_pred             HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence                             244444455666667777777777766541 23444555544444444 88888888888888


Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh
Q 010830          211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK  290 (499)
Q Consensus       211 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  290 (499)
                      ...+.....|......+-..|++..|..++.+..   ...|++...|-.-+.....+.++++|..+|.+....+  |+..
T Consensus       578 ~~~pkae~lwlM~ake~w~agdv~~ar~il~~af---~~~pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeR  652 (913)
T KOG0495|consen  578 EQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF---EANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTER  652 (913)
T ss_pred             HhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH---HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--Ccch
Confidence            8778888888888888889999999999999984   4578788899999999999999999999999877644  7777


Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC  370 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  370 (499)
                      .|.--+..---.+..++|.+++++.++.   ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++-.+..|..+...
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakl  728 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKL  728 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHH
Confidence            8877777777788999999999998885   2333457777888888888888888887665543 33334456666666


Q ss_pred             HHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC----C--------------------
Q 010830          371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN----G--------------------  426 (499)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--------------------  426 (499)
                      --+.|.+-.|..++++..-.+ +-+...|...|+.-.+.|+.+.|..+..+..+.    |                    
T Consensus       729 eEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~  807 (913)
T KOG0495|consen  729 EEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI  807 (913)
T ss_pred             HHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence            667788888888888887765 346777888888888888888887766555431    1                    


Q ss_pred             -----CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          427 -----ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       427 -----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                           ..-|..+.-.+...+....++++|.+.|.+.++.+. -+..+|..+...+.++|..
T Consensus       808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~e  867 (913)
T KOG0495|consen  808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTE  867 (913)
T ss_pred             HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCH
Confidence                 122334444555666777888999999999887652 2457888899999999965

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=4e-12  Score=119.08  Aligned_cols=287  Identities=13%  Similarity=0.071  Sum_probs=196.2

Q ss_pred             ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830          162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANK  238 (499)
Q Consensus       162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~  238 (499)
                      +..+|...|..+..+ +.-+..+...+-.+|... +++++|+.+|+.+++.   ...+..+|.+.+--+-+.   -+---
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHH
Confidence            567788888875443 223335555666778877 8888888888887662   223556666655433221   11111


Q ss_pred             HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      +-+.+.   ...|+.+.+|.++.++|.-.++.+.|++.|++..+.+  | ...+|+.+-.-+.....+|.|...|+..+.
T Consensus       409 Laq~Li---~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  409 LAQDLI---DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHH---hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            222232   2245566788888888888888999988888877754  4 567888777778888888888888888876


Q ss_pred             cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh
Q 010830          318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL  397 (499)
Q Consensus       318 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  397 (499)
                      ..   +.+-..|.-+.-.|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++.....+ |+.
T Consensus       484 ~~---~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l  558 (638)
T KOG1126|consen  484 VD---PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL  558 (638)
T ss_pred             CC---chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence            42   233445556677788888899998888888874322 4566677777788888889999999888876533 333


Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830          398 NCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY  465 (499)
Q Consensus       398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  465 (499)
                      .--.-+..+...+++++|...++++++  +.|+. .+|..+...|.+.|+.+.|+.-|--+.+.+-++.
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            333345556667888899999888887  44544 4555666778888888888888888876554443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=2.1e-09  Score=96.95  Aligned_cols=354  Identities=10%  Similarity=0.082  Sum_probs=252.4

Q ss_pred             cCCchhHHHHHH-HhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           92 YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        92 ~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      .|+..-|.++|+ |+  ...|+..+|++.|+.-.+.+..+.|..+|++..-.+ |++.+|--..+.=-++|.+..|..+|
T Consensus       154 LgNi~gaRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  154 LGNIAGARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             hcccHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            367777777774 54  367788888888888888888888888887776554 67777777777777788888888888


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHH----HccCCchHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHH------
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAI----CRQENQTSRALEFLNRVKKIVDPD--GDSFAILLEGWEKEGNVEEANK------  238 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~------  238 (499)
                      +...+.  -.|...-..+..++    .++ ..++.|..+|.-....++.+  ...|......=-+-|+.....+      
T Consensus       231 erAie~--~~~d~~~e~lfvaFA~fEe~q-kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR  307 (677)
T KOG1915|consen  231 ERAIEF--LGDDEEAEILFVAFAEFEERQ-KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR  307 (677)
T ss_pred             HHHHHH--hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence            776543  12222222333333    234 56777777777666555544  4555555554445565444333      


Q ss_pred             --HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHH---HHcCCHh
Q 010830          239 --TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDIL---VKLNDST  306 (499)
Q Consensus       239 --~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~~~~~  306 (499)
                        -++.+.+.   +|-|-.+|-..++.--..|+.+...++|++.... ++|-.       .+|--+=-+|   ....+.+
T Consensus       308 k~qYE~~v~~---np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  308 KFQYEKEVSK---NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhHHHHHHHh---CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence              23344333   5667778888888888889999999999998764 34421       2232222222   2568899


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHH----HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLL----CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK  382 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  382 (499)
                      .+.++|+..++.   ++-..+||..+=-.|    .++.++..|.+++.....  ..|-..+|..-|..-.+.++++.+..
T Consensus       384 rtr~vyq~~l~l---IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk  458 (677)
T KOG1915|consen  384 RTRQVYQACLDL---IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK  458 (677)
T ss_pred             HHHHHHHHHHhh---cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence            999999999885   555666666554444    467889999999987764  67888899998988899999999999


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          383 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      ++++.++-+. -+..+|......-...|+.+.|..+|.-.++.. +......|.+.|..-...|.+++|..+++++++..
T Consensus       459 LYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  459 LYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            9999999763 367788888777788899999999999888633 34455678888888888999999999999998753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=9.5e-10  Score=97.32  Aligned_cols=295  Identities=13%  Similarity=0.109  Sum_probs=234.3

Q ss_pred             HHHHHHHHh--CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          117 NLMVDVLGK--NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       117 ~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      ..+..+..+  .|++.+|.++..+-.+.+......|..-+.+--..|+.+.+-.++.+.-+..-.++...+-+.......
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            344455444  599999999999988888767777888888889999999999999999876336667777777888888


Q ss_pred             cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch------HHhHHHHHHHHhcCC
Q 010830          195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH------VLAYETFLITLIRGK  268 (499)
Q Consensus       195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~~li~~~~~~~  268 (499)
                      . |+++.|..-.+++.+.-+.+..+......+|.+.|++.....+...+.+. +.--+.      ..+|+.+++-....+
T Consensus       166 ~-~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         166 R-RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             C-CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            8 99999999999988877888999999999999999999999999999886 444311      235777777777766


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHH
Q 010830          269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF  348 (499)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  348 (499)
                      ..+.-...+++.-.. .+-+...-.+++.-+..+|+.++|.++..+..+.+  ..|+    -...-.+.+-++.+.-++.
T Consensus       244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~----L~~~~~~l~~~d~~~l~k~  316 (400)
T COG3071         244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPR----LCRLIPRLRPGDPEPLIKA  316 (400)
T ss_pred             cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChh----HHHHHhhcCCCCchHHHHH
Confidence            666655666654432 34456677788889999999999999999999887  4454    1222345667788877777


Q ss_pred             HHHHHH-CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          349 FDQMVF-HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       349 ~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      .++-.+ .+..|  ..+.+|...|.+++.+.+|...|+..++.  .|+..+|+.+.+++.+.|+.++|.++.++..-
T Consensus       317 ~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         317 AEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            776555 34444  77888999999999999999999988775  58999999999999999999999999988764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.50  E-value=7.5e-09  Score=97.13  Aligned_cols=374  Identities=11%  Similarity=-0.015  Sum_probs=215.6

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      ...++.|.-++..+.+-.+.+...|.+    |++..-++.|..+++..++.-+-+...|.+-...=-.+|+.+...++..
T Consensus       389 lE~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~  464 (913)
T KOG0495|consen  389 LEEPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID  464 (913)
T ss_pred             ccChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            345666888888777766777777754    5566778999999999999888888899998888888999999888876


Q ss_pred             H----HHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          172 V----MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IV--DPDGDSFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       172 ~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      +    +...|+..+...|-.=...|-.. |..-.+..+...... |+  ..-..||+.-...|.+.+.++-|..+|....
T Consensus       465 rgl~~L~~ngv~i~rdqWl~eAe~~e~a-gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  465 RGLSELQANGVEINRDQWLKEAEACEDA-GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             HHHHHHhhcceeecHHHHHHHHHHHhhc-CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            5    35567777777776666666666 666666666655433 22  2234566666666777777777777766663


Q ss_pred             HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC
Q 010830          245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP  324 (499)
Q Consensus       245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  324 (499)
                      +   +.|.+...|...+..--..|..+....+|++....- +-....|......+-..|+...|..++.+..+..   +-
T Consensus       544 q---vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pn  616 (913)
T KOG0495|consen  544 Q---VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PN  616 (913)
T ss_pred             h---hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CC
Confidence            3   345455566666666566666666666666655432 2233344444455555666666666666666553   33


Q ss_pred             CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010830          325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT  404 (499)
Q Consensus       325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  404 (499)
                      +...|-.-+.....+.+++.|..+|.+...  ..|+...|..-+...-..+..++|.+++++.++. ++.-...|..+.+
T Consensus       617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ  693 (913)
T ss_pred             cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence            555666666666666666666666666554  2344444444444444455566666666555543 1112233444444


Q ss_pred             HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      .+-+.++.+.|.+.|..-.+. ++-.+..|-.|.+.--+.|..-+|..+++...-++. -+...|-..|+.=.+.|..
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~  769 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNK  769 (913)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCH
Confidence            444444444444444332221 111222333333333334444444444444433321 1333344444444444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.48  E-value=5.2e-09  Score=98.11  Aligned_cols=410  Identities=13%  Similarity=0.106  Sum_probs=260.0

Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH
Q 010830           68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL  147 (499)
Q Consensus        68 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  147 (499)
                      +...|.+.+-.++.-....+..-|.|+-++|....+...++...+.+.|..+.-.+...+++++|++.|......+..|.
T Consensus        30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence            44455566666666666666667889999999999988888899999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccC--CCCHHHHHHHH-
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPDGDSFAILL-  224 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ll-  224 (499)
                      ..|.-+.-.-++.|+++........+.+.. ......|..+..+..-. |+...|..+.+...+..  .|+...+.... 
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~  187 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSEL  187 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence            888777777777777777777777766542 22334455555555555 77778888777766532  35544443322 


Q ss_pred             -----HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-HH
Q 010830          225 -----EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DI  298 (499)
Q Consensus       225 -----~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~  298 (499)
                           ....+.|..++|.+.+......   .-+....-.+-...+.+.++.++|..++..+....  ||...|...+ .+
T Consensus       188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~  262 (700)
T KOG1156|consen  188 LLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKA  262 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHH
Confidence                 2334566777776666655432   12122233345566677777777777777777665  6655554433 33


Q ss_pred             HHHcCCHhHHH-HHHHH----------------------------------HHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830          299 LVKLNDSTHAV-QLWDI----------------------------------MVGIGFNLMPNLIMYNAVIGLLCNNDDVD  343 (499)
Q Consensus       299 ~~~~~~~~~a~-~~~~~----------------------------------~~~~~~~~~~~~~~~~~li~~~~~~~~~~  343 (499)
                      +.+-.+.-++. .+|..                                  +.+.|  ++   .++..+...|-.-...+
T Consensus       263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p---~vf~dl~SLyk~p~k~~  337 (700)
T KOG1156|consen  263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VP---SVFKDLRSLYKDPEKVA  337 (700)
T ss_pred             HHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC--CC---chhhhhHHHHhchhHhH
Confidence            32222222222 33333                                  33333  21   22333333332222111


Q ss_pred             HHHHHHHHHHH--CCC------------CCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 010830          344 NVFRFFDQMVF--HGA------------FPDSLT--YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITML  406 (499)
Q Consensus       344 ~a~~~~~~m~~--~g~------------~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  406 (499)
                      -..++.-.+..  .|.            .|....  +-.+...+-+.|+++.|..+++..+..  .|+ ...|..=.+.+
T Consensus       338 ~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~  415 (700)
T KOG1156|consen  338 FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIF  415 (700)
T ss_pred             HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHH
Confidence            11111111111  011            344443  445677888999999999999999875  344 33455556788


Q ss_pred             hccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHH----------HHHH
Q 010830          407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL----------KKAF  476 (499)
Q Consensus       407 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----------l~~~  476 (499)
                      ...|++++|..++++..+.+ .+|..+-..-.+-..++++.++|.++...+.+.|.  +....-.-          -++|
T Consensus       416 kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay  492 (700)
T KOG1156|consen  416 KHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAY  492 (700)
T ss_pred             HhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHH
Confidence            89999999999999998866 45665555666667789999999999999988774  22222111          3457


Q ss_pred             Hhcccc--hHHHHHHHHHHH
Q 010830          477 YNESRS--MRDIFDSLERRC  494 (499)
Q Consensus       477 ~~~g~~--a~~~~~~~~~~~  494 (499)
                      .+.|++  |+.-|..+-+..
T Consensus       493 ~r~~k~g~ALKkfh~i~k~~  512 (700)
T KOG1156|consen  493 LRQNKLGLALKKFHEIEKHY  512 (700)
T ss_pred             HHHHHHHHHHHHHhhHHHHH
Confidence            777777  776666655543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.48  E-value=5.4e-11  Score=106.36  Aligned_cols=278  Identities=11%  Similarity=0.072  Sum_probs=182.1

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      .+.+.|+++.|++++.-..+.+-  .+...-|.-+-.|.+ ..++.+|.+.-+...... .-+......--...... |+
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n-gd  505 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN-GD  505 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec-Cc
Confidence            46777888888888877776652  222222222223333 336777776665554321 11111111111112223 88


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR  278 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~  278 (499)
                      +++|.+.|.+.......-......+.-.+-..|++++|++.|-++.   ++-.+++.....+.+.|-...+...|++++.
T Consensus       506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh---~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            8888888887765333333333333345667788888888888773   4444467777778888888888888888886


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830          279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      +.... ++.|..+..-|.+.|-+.|+-.+|.+.+-+-.+-   ++.+..+...|...|....-+++++..|++..-  ++
T Consensus       583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq  656 (840)
T KOG2003|consen  583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ  656 (840)
T ss_pred             Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence            55432 3456777778888888888888888876655443   566788888888888888888888888887655  67


Q ss_pred             CCHHhHHHHHHHHH-hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830          359 PDSLTYNMIFECLI-KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE  411 (499)
Q Consensus       359 p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  411 (499)
                      |+..-|..|+..|. +.|++++|+++++...+ .++-|..+...|++.+...|.
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence            88888888876554 57888888888888765 356677777778777776653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.8e-10  Score=100.75  Aligned_cols=286  Identities=10%  Similarity=0.085  Sum_probs=217.4

Q ss_pred             hCCChHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHccCCchHH
Q 010830          125 KNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSR  201 (499)
Q Consensus       125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~  201 (499)
                      ...+.+++++-.+.....|.++..-+.+. ..+.-...+++.|+.+|+++.+...-  -|..+|+.++-.--.+     .
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-----s  313 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-----S  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-----H
Confidence            33456666666777777776554444443 34455678999999999999876311  2667787776543222     2


Q ss_pred             HHHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          202 ALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       202 a~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      .+.++.+ .-...+--..|+.++.+.|.-.++.++|...|++..   .++|.....|+.+..-|...++...|.+-++..
T Consensus       314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL---kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL---KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH---hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            2222222 222334566788899999999999999999999994   558878889999999999999999999999998


Q ss_pred             hhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830          281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD  360 (499)
Q Consensus       281 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  360 (499)
                      .+-. +.|-..|-.+..+|.-.+...-|.-.|++..+..   +-|...|.+|..+|.+.++.++|++.|......|-. +
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e  465 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E  465 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence            8765 4578889999999999999999999999999864   558999999999999999999999999999987543 6


Q ss_pred             HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830          361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT--PLNCATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       361 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                      ...+..+.+.|-+.++.++|...|+.-++.    |...+  ......|...+.+.+++++|........
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            688999999999999999999988877652    33222  2233345566677788887776555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=2.9e-10  Score=112.85  Aligned_cols=273  Identities=11%  Similarity=0.033  Sum_probs=191.0

Q ss_pred             HHHhCCCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCH-HHHHHHHHHHH---c-----cCCchHHHH
Q 010830          138 VMKEDGVLSLPTFASIFDSYCG-----AGKYDEAVMSFDVMSMHGVEQDV-VAVNSLLSAIC---R-----QENQTSRAL  203 (499)
Q Consensus       138 ~m~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~---~-----~~~~~~~a~  203 (499)
                      +.......+...|...+++-..     .+++++|.+.|++..+.  .|+. ..|..+..++.   .     ..+++++|.
T Consensus       247 ~~~~~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~  324 (553)
T PRK12370        247 TKQISELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAK  324 (553)
T ss_pred             hcccCCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence            3334555566666666665322     23567899999988866  5543 34444433332   1     115588999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      ..+++..+..+.+...+..+...+...|++++|...|++..+.   .|++...+..+...+...|++++|+..+++..+.
T Consensus       325 ~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        325 EHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999988877778899999999999999999999999999654   7888888999999999999999999999998876


Q ss_pred             CCCCCH-hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-
Q 010830          284 NCFPTL-KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-  361 (499)
Q Consensus       284 ~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-  361 (499)
                      .  |+. ..+..++..+...|++++|...++++.+..  .+-+...+..+...+...|+.++|...+.++...  .|+. 
T Consensus       402 ~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~  475 (553)
T PRK12370        402 D--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL  475 (553)
T ss_pred             C--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence            5  432 233344555777899999999999988653  1224556777888889999999999999887653  3343 


Q ss_pred             HhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC
Q 010830          362 LTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG  426 (499)
Q Consensus       362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  426 (499)
                      ...+.+...|...|  ++|...++.+.+. ...+....+  +-..+.-.|+.+.+..+ +++.+.+
T Consensus       476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            34455555667666  4788877777664 222322223  33334456677766655 7777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.8e-10  Score=101.67  Aligned_cols=200  Identities=13%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      ....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            356677777888888888888888888877766667777778888888888888888888776653 3344555566666


Q ss_pred             HHccCCchHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          192 ICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      +... |++++|...+++....  .......+..+...+...|++++|.+.+++..+.   .|++...+..+...+...|+
T Consensus       109 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       109 LCQQ-GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHc-ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCC
Confidence            6666 7777777777776542  1223445556666677777777777777776543   44455566667777777777


Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      +++|...+++..+. ...+...+..+...+...|+.+.|..+.+.+..
T Consensus       185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            77777777766654 233444555555666666666666666655543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.7e-10  Score=104.00  Aligned_cols=271  Identities=12%  Similarity=0.048  Sum_probs=224.8

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      ..+..+..++++...+..+++...+..-|..+...|+..+-..+=..+.+..+..+.+|-++.-.|.-.|+..+|.+.|.
T Consensus       257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~S  336 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFS  336 (611)
T ss_pred             cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence            46788899999988888888999999999999999999988888889999888888999999999999999999999998


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      +..... .-=...|-..-..++-. +..++|...+....+-++.....+--+.--|.+.++++.|.+.|.+.   .++.|
T Consensus       337 Kat~lD-~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A---~ai~P  411 (611)
T KOG1173|consen  337 KATTLD-PTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA---LAIAP  411 (611)
T ss_pred             HHhhcC-ccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH---HhcCC
Confidence            875432 22346788888888888 99999999998877654444444455566788899999999999998   68899


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----C--CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGE----N--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      .|+...+-+.-...+.+.+.+|..+|+.....    +  ......+++.|..+|.+.+..++|+..+++.+...   +.|
T Consensus       412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k~  488 (611)
T KOG1173|consen  412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PKD  488 (611)
T ss_pred             CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CCc
Confidence            99999999999999999999999999876521    1  11245568888999999999999999999998874   678


Q ss_pred             HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 010830          326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI  372 (499)
Q Consensus       326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  372 (499)
                      ..++.++.-.|...|+++.|.+.|.+...  +.|+..+...++..+.
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            99999999999999999999999998876  6788777777766443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=1e-11  Score=119.60  Aligned_cols=274  Identities=14%  Similarity=0.175  Sum_probs=162.5

Q ss_pred             HHHHHHHhCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc
Q 010830          134 NAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI  212 (499)
Q Consensus       134 ~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  212 (499)
                      +.+-.+...|+ |+..||..+|..|+..|+++.|- +|.-|.-.....+...|+.++.+.... ++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC---------
Confidence            34455556663 66666777777777777766666 666666555556666666666666555 5554443         


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh-hCCCCCCHhh
Q 010830          213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF  291 (499)
Q Consensus       213 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~  291 (499)
                       .|...+|..|..+|...||+..    |+...+          -...++..+...|-......++..+. ..+..||..+
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n  144 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN  144 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence             4666667777777777666654    222221          01223333444444444444443322 2233344322


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 010830          292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECL  371 (499)
Q Consensus       292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  371 (499)
                         .+.-..-.|-++.+.+++..+-.... ..|..+    +++-+...  .....++........-.|++.+|.+++.+-
T Consensus       145 ---~illlv~eglwaqllkll~~~Pvsa~-~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~a  214 (1088)
T KOG4318|consen  145 ---AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRA  214 (1088)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHH
Confidence               33334445556666555544332210 111111    23333322  222333333332211158888899988888


Q ss_pred             HhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCC
Q 010830          372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR  446 (499)
Q Consensus       372 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  446 (499)
                      ..+|+.+.|..++.+|.+.|++.+..-|..|+-+   .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus       215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            8889999999999999888888888877777755   77888888888888888999999888888877777554

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=1.1e-10  Score=112.72  Aligned_cols=336  Identities=15%  Similarity=0.063  Sum_probs=194.1

Q ss_pred             CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH
Q 010830          108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN  186 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  186 (499)
                      |..||..+|.++|..||..|+.+.|- +|.-|.-+. +.+...|+.++.+....++.+.+.           .|...+|.
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt   87 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT   87 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence            56677777777777777777777776 777666666 345556777777666666666554           56666777


Q ss_pred             HHHHHHHccCCchHH---HHH--------------------HHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          187 SLLSAICRQENQTSR---ALE--------------------FLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       187 ~ll~~~~~~~~~~~~---a~~--------------------~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                      .|+.+|... ||+..   +++                    ++-.+.-  +.-||..   .++....-.|-++.+.+++.
T Consensus        88 ~Ll~ayr~h-GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~  163 (1088)
T KOG4318|consen   88 NLLKAYRIH-GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLA  163 (1088)
T ss_pred             HHHHHHHhc-cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHh
Confidence            777777766 66544   111                    1111110  1122222   23334445566666666666


Q ss_pred             HHhHccCCCCchHHhHHHHHHHHhcC-CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 010830          242 EMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF  320 (499)
Q Consensus       242 ~~~~~~~~~p~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  320 (499)
                      .+.......| .    ..+++-+... ..+++-..+.....+   .|+..+|..++++....|+.+.|..++.+|.+.| 
T Consensus       164 ~~Pvsa~~~p-~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-  234 (1088)
T KOG4318|consen  164 KVPVSAWNAP-F----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-  234 (1088)
T ss_pred             hCCcccccch-H----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-
Confidence            6544312222 1    1123333333 334444444443333   4888899999999999999999999999999998 


Q ss_pred             CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 010830          321 NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA  400 (499)
Q Consensus       321 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  400 (499)
                       ++.+.+-|-.|+-+   .++...+..++.-|.+.|+.|+..|+..-+..+..+|....+        +.|. +....++
T Consensus       235 -fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t  301 (1088)
T KOG4318|consen  235 -FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT  301 (1088)
T ss_pred             -CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence             66676666666655   777888888888888899999999988888777776552222        1222 2222222


Q ss_pred             HHHHHHhccC-----ChhH--HHHHHHHHH---HCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCcc-CHH
Q 010830          401 TAITMLLDAD-----EPEI--AIEIWNYIL---ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--RILI-YEV  467 (499)
Q Consensus       401 ~li~~~~~~g-----~~~~--a~~~~~~m~---~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~p-~~~  467 (499)
                      +-+..-.-.|     .++.  +.-+.....   -.|+.....+|...+. ....|+-++..++...|..-  ...+ +..
T Consensus       302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~  380 (1088)
T KOG4318|consen  302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD  380 (1088)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence            2222222223     1111  111112221   1344444455554443 33478888888888888642  2222 345


Q ss_pred             HHHHHHHHHHhcccc
Q 010830          468 TMHKLKKAFYNESRS  482 (499)
Q Consensus       468 ~~~~ll~~~~~~g~~  482 (499)
                      .|..++.-|.+.-+.
T Consensus       381 a~~~~lrqyFrr~e~  395 (1088)
T KOG4318|consen  381 AFGALLRQYFRRIER  395 (1088)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            677777777665444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=4.8e-09  Score=95.11  Aligned_cols=379  Identities=13%  Similarity=0.084  Sum_probs=206.3

Q ss_pred             hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ..+.+++|.++|.|+.. .+|| +.-|.....+|...|+++++.+--....+.++.-+..+.--..++-..|++++|+.=
T Consensus       127 ~~kkY~eAIkyY~~AI~-l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D  205 (606)
T KOG0547|consen  127 RNKKYDEAIKYYTQAIE-LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD  205 (606)
T ss_pred             hcccHHHHHHHHHHHHh-cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence            35789999999999987 4555 889999999999999999988877777777655555666666677777777776533


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHH---------Hhc---cCCCCHHHHHHHHHHHH---------
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR---------VKK---IVDPDGDSFAILLEGWE---------  228 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~---------~~~---~~~~~~~~~~~ll~~~~---------  228 (499)
                      ..-.             +++.++... .-.-.+.+++++         +++   .+-|+.....+....+.         
T Consensus       206 ~tv~-------------ci~~~F~n~-s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~  271 (606)
T KOG0547|consen  206 VTVL-------------CILEGFQNA-SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN  271 (606)
T ss_pred             hhHH-------------HHhhhcccc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence            2221             111111111 111111111111         110   11122211111111110         


Q ss_pred             ----------------hcC---CHHHHHHHHHHHhHccCCCC----ch------HHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830          229 ----------------KEG---NVEEANKTFGEMVERFEWNP----EH------VLAYETFLITLIRGKQVDEALKFLRV  279 (499)
Q Consensus       229 ----------------~~g---~~~~a~~~~~~~~~~~~~~p----~~------~~~~~~li~~~~~~~~~~~a~~~~~~  279 (499)
                                      ..+   .++.|.+.+.+-.......+    .|      ..+.......+.-.|+.-.|..-|+.
T Consensus       272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~  351 (606)
T KOG0547|consen  272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA  351 (606)
T ss_pred             CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence                            001   12222222211111000000    00      01111111122333666666666766


Q ss_pred             HhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 010830          280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP  359 (499)
Q Consensus       280 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  359 (499)
                      .+...-.++. .|--+..+|....+.++..+.|......+   +-|..+|..-.+.+.-.++++.|..=|++.++.  .|
T Consensus       352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~p  425 (606)
T KOG0547|consen  352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DP  425 (606)
T ss_pred             HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Ch
Confidence            6665433322 14455556677777777777777777654   345666666666666667777777777777663  23


Q ss_pred             -CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-----C--CChH
Q 010830          360 -DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-----I--LPLE  431 (499)
Q Consensus       360 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~--~p~~  431 (499)
                       +...|..+..+..+.++++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+..++..     +  .+.+
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p  504 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP  504 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence             3345555555566677777777777777663 44456677777777777777777777777766421     1  1112


Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      .+.-.++..-.+ +++..|.+++.+..+.+.+ ....|..|...-.+.|+.  |+++|+.-..-
T Consensus       505 lV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  505 LVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             hhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            222233322233 6777777777777655432 335666666666666666  77777665443

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=4.9e-10  Score=111.22  Aligned_cols=267  Identities=11%  Similarity=0.023  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhHcc
Q 010830          181 DVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE---------KEGNVEEANKTFGEMVERF  247 (499)
Q Consensus       181 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~  247 (499)
                      +...|...+.+...    ..++.++|..+|++..+..+.+...|..+..+|.         ..+++++|...+++..+  
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~--  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE--  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--
Confidence            44455555554321    1145678888888877655556666666655543         22447788888888754  


Q ss_pred             CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830          248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI  327 (499)
Q Consensus       248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  327 (499)
                       +.|++...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+..   +.+..
T Consensus       333 -ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~  407 (553)
T PRK12370        333 -LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAA  407 (553)
T ss_pred             -cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChh
Confidence             477788888888888888888888888888887765 2235566777778888888888888888888754   22233


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITML  406 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  406 (499)
                      .+..++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+.++...  .|+ ....+.+...|
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~  485 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY  485 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence            333444456667788888888888765422123444566667777888888888888776553  233 23334444555


Q ss_pred             hccCChhHHHHHHHHHHHC-CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          407 LDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       407 ~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      ...|  +.|...++.+.+. .-.+....+  +-..|.-.|+.+.+..+ +++.+.+
T Consensus       486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            6666  4666666665541 111211222  23334455666666665 7776553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.38  E-value=5.8e-10  Score=98.39  Aligned_cols=197  Identities=12%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL  299 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  299 (499)
                      +..+...|...|++++|.+.+++..+.   .|.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        34 ~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        34 RVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            333444444444444444444444322   23333344444444444444444444444443322 11223333344444


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830          300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE  379 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  379 (499)
                      ...|++++|.+.+++...... .......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            444444444444444443210 11122334444444455555555555555544421 1123344444445555555555


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830          380 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                      |...+++..+. .+.+...+..+...+...|+.++|..+++.+.
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555554443 12233334444444445555555555544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=5.5e-09  Score=96.47  Aligned_cols=288  Identities=9%  Similarity=-0.008  Sum_probs=187.8

Q ss_pred             cCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH
Q 010830          180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET  259 (499)
Q Consensus       180 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~  259 (499)
                      -+.........-+... +++.+..++++.+-+..+++...+..-|..+.+.|+..+-..+=.++.+.   .|+.+.+|-+
T Consensus       242 ~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~a  317 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYG-CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWFA  317 (611)
T ss_pred             hcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchhh
Confidence            3444444444555555 77777777777777777777777777777777777777776666667554   5666677888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830          260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN  339 (499)
Q Consensus       260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  339 (499)
                      +.--|...|+..+|.+.|.+....+- .-...|-....+|+-.|..++|...+...-+.-   +-...-+--+.--|.+.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~---~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM---PGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc---cCCcchHHHHHHHHHHh
Confidence            77777777888888888776543221 113456666777777777777777776665531   11111122233346667


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CC----CCChhhHHHHHHHHhccCChh
Q 010830          340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EW----QPTPLNCATAITMLLDADEPE  413 (499)
Q Consensus       340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~p~~~~~~~li~~~~~~g~~~  413 (499)
                      ++.+.|.+.|.+...- .+-|+...+-+.......+.+.+|..+|+..+..  ..    .--..+++.|.++|.+.+.++
T Consensus       394 ~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~  472 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE  472 (611)
T ss_pred             ccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence            7777888887777653 2235566666666666677777888777776632  00    012335677777788888888


Q ss_pred             HHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830          414 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE  479 (499)
Q Consensus       414 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  479 (499)
                      +|+..++...... +-+..++.++.-.|...|+++.|.+.|.+.+  .+.||..+...++..+...
T Consensus       473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence            8888887777643 4466777777777777788888888887776  5567777777776665544

>PF13041 PPR_2: PPR repeat family

Probab=99.37  E-value=1.7e-12  Score=82.63  Aligned_cols=49  Identities=31%  Similarity=0.677  Sum_probs=26.1

Q ss_pred             CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 010830          324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLI  372 (499)
Q Consensus       324 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  372 (499)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4455555555555555555555555555555555555555555555544

>PF13041 PPR_2: PPR repeat family

Probab=99.36  E-value=2e-12  Score=82.37  Aligned_cols=50  Identities=22%  Similarity=0.289  Sum_probs=39.2

Q ss_pred             ChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830          429 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       429 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  478 (499)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777888888888888888888888888877888888888888777764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=5.1e-09  Score=100.53  Aligned_cols=289  Identities=15%  Similarity=0.135  Sum_probs=169.2

Q ss_pred             HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----
Q 010830          192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----  267 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----  267 (499)
                      +... |++++|++.++.-.+.+.............+.+.|+.++|..+|..+.++   +|+|..-|..+..+..-.    
T Consensus        14 l~e~-g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   14 LEEA-GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHC-CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhcccc
Confidence            3444 77777777776665555555666666777777777777777777777655   666665566555555222    


Q ss_pred             -CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC-HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHH
Q 010830          268 -KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND-STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV  345 (499)
Q Consensus       268 -~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  345 (499)
                       .+.+...++|+++...-  |.......+.-.+..... -..+...+..+...|  +   +.+|+.|-..|......+-.
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--v---PslF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG--V---PSLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC--C---chHHHHHHHHHcChhHHHHH
Confidence             24566666666665433  322222222111111111 123444555566666  2   23455555555544444444


Q ss_pred             HHHHHHHHHC----C----------CCCCHH--hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhc
Q 010830          346 FRFFDQMVFH----G----------AFPDSL--TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLD  408 (499)
Q Consensus       346 ~~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~  408 (499)
                      ..++......    |          -.|...  ++..+.+.|-..|++++|++++++.++..  |+ +..|..-.+.+-+
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence            4555444321    1          123332  33445566777788888888888777754  33 5567777777777


Q ss_pred             cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHH--------HHHHHHHHHhcc
Q 010830          409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--------MHKLKKAFYNES  480 (499)
Q Consensus       409 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~g  480 (499)
                      .|++++|.+.++...+.+. -|..+-+-....+.++|+.++|.+++..+...+..|-...        .....++|.+.|
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             CCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888877777553 3556666666777778888888888877776654332211        133455677777


Q ss_pred             cc--hHHHHHHHHHHH
Q 010830          481 RS--MRDIFDSLERRC  494 (499)
Q Consensus       481 ~~--a~~~~~~~~~~~  494 (499)
                      +.  |++.|..+.+..
T Consensus       320 ~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  320 DYGLALKRFHAVLKHF  335 (517)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            77  777776666543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.35  E-value=6.7e-09  Score=99.74  Aligned_cols=292  Identities=11%  Similarity=0.096  Sum_probs=170.3

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-cc---
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQ---  195 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~---  195 (499)
                      ...+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+.+.  .|+...|-..+..+. -.   
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence            345667777777777776654444444556666777777777777777777777766  455555544443333 11   


Q ss_pred             -CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          196 -ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE-EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       196 -~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                       ..+.+....+++++....+. ......+.-.+..-..+. .+...+..+..+ |+.+    +|+.+-..|....+.+-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs----lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKYPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS----LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHhCcc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch----HHHHHHHHHcChhHHHHH
Confidence             12456666777776554322 121111111111111222 233444444443 4332    566666666655555555


Q ss_pred             HHHHHHHhhC----C----------CCCCH--hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830          274 LKFLRVMKGE----N----------CFPTL--KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC  337 (499)
Q Consensus       274 ~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~  337 (499)
                      .+++......    +          -.|+.  .++..+...|...|+.++|.++++..++..   +..+..|..-.+.|-
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt~~ely~~KarilK  239 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHH
Confidence            5555554321    1          12222  234455666777888888888888887753   334667777777888


Q ss_pred             cCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhH--------HHHHHHHhcc
Q 010830          338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC--------ATAITMLLDA  409 (499)
Q Consensus       338 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~li~~~~~~  409 (499)
                      +.|++.+|.+.++....... -|...-+.....+.++|++++|.+++....+.+..|-...+        .-...+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887776432 25555566667777888888888888777665543322211        2345667777


Q ss_pred             CChhHHHHHHHHHH
Q 010830          410 DEPEIAIEIWNYIL  423 (499)
Q Consensus       410 g~~~~a~~~~~~m~  423 (499)
                      |++..|.+.|..+.
T Consensus       319 ~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  319 GDYGLALKRFHAVL  332 (517)
T ss_pred             hhHHHHHHHHHHHH
Confidence            88877777665554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=2.3e-09  Score=92.16  Aligned_cols=230  Identities=12%  Similarity=0.036  Sum_probs=176.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830          151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE  230 (499)
Q Consensus       151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~  230 (499)
                      +.+.++|.+.|-+.+|.+-|+.-.+.  .|-+.||..|-++|.+. ++.+.|+.++.+-.+..+-|+....-+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            56778888999999999988887765  67788888888888888 8888888888887777777777777788888888


Q ss_pred             CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHH
Q 010830          231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ  310 (499)
Q Consensus       231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  310 (499)
                      ++.++|.++|+...+.   .|.++.....+...|.-.++++-|+.+|+++.+.|+. +...|+.+--+|.-.+++|.+..
T Consensus       304 ~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence            8889999998888554   5657777777778888888888888888888888864 56777777778888888888888


Q ss_pred             HHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          311 LWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       311 ~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      -|++....-  -.|  -..+|-.+.......|++..|.+.|+-...+.. -+...+|.|.-.-.+.|++++|..+++...
T Consensus       380 sf~RAlsta--t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  380 SFQRALSTA--TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHhhc--cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            888777543  223  245677777777777888888888877766532 245667777766777788888888877765


Q ss_pred             HC
Q 010830          389 KN  390 (499)
Q Consensus       389 ~~  390 (499)
                      ..
T Consensus       457 s~  458 (478)
T KOG1129|consen  457 SV  458 (478)
T ss_pred             hh
Confidence            53

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.9e-09  Score=92.68  Aligned_cols=234  Identities=14%  Similarity=0.120  Sum_probs=193.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH-HH
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF-SN  294 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~  294 (499)
                      |.+=-+-+.++|.+.|.+.+|++.|+.-.+.   .| .+.||..|-+.|.+.+++..|+.++.+-.+.  .|...|| ..
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g  295 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG  295 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence            3333456889999999999999999988765   44 5669999999999999999999999887664  3555555 45


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN  374 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  374 (499)
                      +.+.+-..++.++|.++|+...+..   +.++....++...|.-.++++-|+..|+++.+-|+. +...|+.+.-+|...
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya  371 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA  371 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence            6778888899999999999999875   567888888888899999999999999999999886 778899999999999


Q ss_pred             CCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHH
Q 010830          375 KRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR  452 (499)
Q Consensus       375 g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  452 (499)
                      +++|-++..|++.+..--.|+  ...|-.+.......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..
T Consensus       372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence            999999999999877533333  3356666777778899999999999887655 3456788888888889999999999


Q ss_pred             HHHHHHHc
Q 010830          453 FAEEMLNR  460 (499)
Q Consensus       453 ~~~~m~~~  460 (499)
                      +++...+.
T Consensus       451 ll~~A~s~  458 (478)
T KOG1129|consen  451 LLNAAKSV  458 (478)
T ss_pred             HHHHhhhh
Confidence            99988754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.22  E-value=3e-06  Score=79.99  Aligned_cols=266  Identities=15%  Similarity=0.203  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC--chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC---------
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNP--EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---------  287 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---------  287 (499)
                      .|..+.+.|-..|+++.|..+|++..+- ...-  +=..+|......-.+..+++.|+++++........|         
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            4666777788888888888888887553 2221  113456666677777788888888777654321111         


Q ss_pred             --------CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 010830          288 --------TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP  359 (499)
Q Consensus       288 --------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  359 (499)
                              +...|...++.--..|-++....+|+.++.... ..|...  -.....+-.+.-++++.++|++-...---|
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii--~NyAmfLEeh~yfeesFk~YErgI~LFk~p  544 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQII--INYAMFLEEHKYFEESFKAYERGISLFKWP  544 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHH--HHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence                    122344444544555677777777777766541 111111  001111122223444444444333321112


Q ss_pred             CH-HhHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCh--------------------------------------h
Q 010830          360 DS-LTYNMIFECLIK---NKRVHEVEKFFHEMIKNEWQPTP--------------------------------------L  397 (499)
Q Consensus       360 ~~-~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~--------------------------------------~  397 (499)
                      +. ..|+.-+.-+.+   ....+.|..+|++.++ |.+|..                                      .
T Consensus       545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~  623 (835)
T KOG2047|consen  545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLD  623 (835)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHH
Confidence            22 233333333322   1234555555555554 333322                                      2


Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH---HHHHhCCChHHHHHHHHHHHH-cCCccCHHHHHHHH
Q 010830          398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL---VGLRNLGRLSDVRRFAEEMLN-RRILIYEVTMHKLK  473 (499)
Q Consensus       398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll  473 (499)
                      .|++.|.--...=.+.....+|++.++.  -|+...-..-+   ..-++.|..+.|..++..-.+ .+...+...|...-
T Consensus       624 myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk  701 (835)
T KOG2047|consen  624 MYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWK  701 (835)
T ss_pred             HHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence            2333333322222233333444444431  23332222222   223456888888888776554 24445666777777


Q ss_pred             HHHHhcccchHHHHHHHHHH
Q 010830          474 KAFYNESRSMRDIFDSLERR  493 (499)
Q Consensus       474 ~~~~~~g~~a~~~~~~~~~~  493 (499)
                      .-=.++|+.  +.+.+|++.
T Consensus       702 ~FEvrHGne--dT~keMLRi  719 (835)
T KOG2047|consen  702 EFEVRHGNE--DTYKEMLRI  719 (835)
T ss_pred             HHHHhcCCH--HHHHHHHHH
Confidence            777888887  788888764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.21  E-value=9.7e-07  Score=83.33  Aligned_cols=388  Identities=14%  Similarity=0.118  Sum_probs=249.6

Q ss_pred             HHHHHHHHh-hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 010830           82 DLVHEVLQL-SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA  160 (499)
Q Consensus        82 ~~~~~~l~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  160 (499)
                      .++...++. -.+++...+++.+.+....+-...+.....-.+...|+-++|.+....-.+.++-+.+.|..+.-.+...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            345555552 2356677777777776666666666666666677889999999999999998888999999999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830          161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF  240 (499)
Q Consensus       161 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  240 (499)
                      .++++|+++|......+ +-|...+.-+--.-++. ++++........+-...+.....|..+..++.-.|+...|..+.
T Consensus        89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988764 44455555443333445 77777777777766655667778889999999999999999999


Q ss_pred             HHHhHccCCCCchHHhHHHHH------HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHHcCCHhHHHHHHH
Q 010830          241 GEMVERFEWNPEHVLAYETFL------ITLIRGKQVDEALKFLRVMKGENCFPTLKFF-SNALDILVKLNDSTHAVQLWD  313 (499)
Q Consensus       241 ~~~~~~~~~~p~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~  313 (499)
                      ++..+.....| +...|....      ....+.|..++|++.+..-... + .|...| ..-...+.+.+++++|..++.
T Consensus       167 ~ef~~t~~~~~-s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  167 EEFEKTQNTSP-SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            99988633233 554554433      4456678888888877654332 1 232222 345677889999999999999


Q ss_pred             HHHhcCCCCCCCHhHHHHHH-HHHHcCCChHHHH-HHHHHHHHCC---CCCCH--------HhHHHHHHHHHh----cC-
Q 010830          314 IMVGIGFNLMPNLIMYNAVI-GLLCNNDDVDNVF-RFFDQMVFHG---AFPDS--------LTYNMIFECLIK----NK-  375 (499)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~g---~~p~~--------~~~~~ll~~~~~----~g-  375 (499)
                      .++...    ||..-|.... .++.+..+.-++. .+|....+.=   -.|-.        .-+...++-|.+    .| 
T Consensus       244 ~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~  319 (700)
T KOG1156|consen  244 RLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV  319 (700)
T ss_pred             HHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence            999875    6666555444 4443333333333 5555554320   00100        011111111111    11 


Q ss_pred             ------------CHhHHHHHHHHHH----H----CC----------CCCChhhH--HHHHHHHhccCChhHHHHHHHHHH
Q 010830          376 ------------RVHEVEKFFHEMI----K----NE----------WQPTPLNC--ATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       376 ------------~~~~a~~~~~~~~----~----~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                                  +...+ .+++++.    .    .|          -+|+...|  -.++..+-+.|+++.|..+++..+
T Consensus       320 p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI  398 (700)
T KOG1156|consen  320 PSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI  398 (700)
T ss_pred             CchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence                        11111 1222221    1    11          13444433  346677788999999999999888


Q ss_pred             HCCCCChH-HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          424 ENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       424 ~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      ++  .|+. ..|-.=.+.+...|++++|..++++..+.+ .+|...-..-.+...+.++.
T Consensus       399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcccc
Confidence            64  3433 233333466888999999999999998765 34544444555555666655

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=4.6e-07  Score=84.53  Aligned_cols=386  Identities=12%  Similarity=0.053  Sum_probs=222.5

Q ss_pred             HHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 010830           81 PDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG  159 (499)
Q Consensus        81 ~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  159 (499)
                      ..++..+-. ...++.++|.+..+.+....+.+...+..-+-++.+.+++++|+++.+.-......+. -+..=..+..+
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence            344444443 4467899999999999888888889999999999999999999966543322111111 11222334457


Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC-----------------------
Q 010830          160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-----------------------  216 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------  216 (499)
                      .++.++|+..++...    .-|..+...-...+.+. +++++|..+|+.+.+...++                       
T Consensus        92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~  166 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS  166 (652)
T ss_pred             cccHHHHHHHHhccc----ccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence            889999999998332    22333666666777888 99999999999884322111                       


Q ss_pred             -----HHHHHH---HHHHHHhcCCHHHHHHHHHHHhH----cc---CCCCchH-----HhHHHHHHHHhcCCCHHHHHHH
Q 010830          217 -----GDSFAI---LLEGWEKEGNVEEANKTFGEMVE----RF---EWNPEHV-----LAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       217 -----~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~----~~---~~~p~~~-----~~~~~li~~~~~~~~~~~a~~~  276 (499)
                           ..+|..   ....+...|++.+|+++++...+    .+   ...-++.     ..---|...+-..|+.++|.++
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                 112222   23344567777777777777611    10   0000011     1122344455666777777777


Q ss_pred             HHHHhhCCCCCCHhhH----HHHHHHHHHc----------------------------------------------CCHh
Q 010830          277 LRVMKGENCFPTLKFF----SNALDILVKL----------------------------------------------NDST  306 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~----~~li~~~~~~----------------------------------------------~~~~  306 (499)
                      +....+... +|....    |.++ +....                                              +..+
T Consensus       247 y~~~i~~~~-~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~  324 (652)
T KOG2376|consen  247 YVDIIKRNP-ADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD  324 (652)
T ss_pred             HHHHHHhcC-CCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            777766542 222111    1111 00000                                              0000


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN--DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF  384 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  384 (499)
                      .+.++-...-.    ..| ...+.+++..+.+.  ....++.+++...-+....-.....-.++......|+++.|.+++
T Consensus       325 q~r~~~a~lp~----~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  325 QVRELSASLPG----MSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             HHHHHHHhCCc----cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            01000000000    111 22333333333222  234555556555554322222345556667778899999999999


Q ss_pred             H--------HHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC--CCCChH----HHHHHHHHHHHhCCChHHH
Q 010830          385 H--------EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN--GILPLE----ASANELLVGLRNLGRLSDV  450 (499)
Q Consensus       385 ~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~ll~~~~~~g~~~~a  450 (499)
                      .        .+.+.+..|  .+...+...+.+.++-+.|..++.+..+.  .-.+..    .++..+...-.+.|+-++|
T Consensus       400 ~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea  477 (652)
T KOG2376|consen  400 SLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA  477 (652)
T ss_pred             HHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence            8        444444444  45666777778888877777777776631  011111    2233333444577999999


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          451 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      ..+++++.+.+ .+|..+...++.+|++..-.
T Consensus       478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~d~e  508 (652)
T KOG2376|consen  478 SSLLEELVKFN-PNDTDLLVQLVTAYARLDPE  508 (652)
T ss_pred             HHHHHHHHHhC-CchHHHHHHHHHHHHhcCHH
Confidence            99999999854 57889999999999987655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.21  E-value=8.3e-09  Score=97.94  Aligned_cols=239  Identities=14%  Similarity=0.127  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCcCHHHHH-HHHHHHHccCCchHHHHHHHHHHhc----cC----
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-----G-VEQDVVAVN-SLLSAICRQENQTSRALEFLNRVKK----IV----  213 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~----~~----  213 (499)
                      +...+...|...|+++.|..+++...+.     | ..|...+.. .+-..|... +++++|..+|+.+..    ..    
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5555667777777777777777665432     2 123333222 233445555 777777777766532    11    


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCCCCchH-HhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCC
Q 010830          214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKG---ENC  285 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~  285 (499)
                      +--..+++.|...|.+.|++++|...++...+-    .+..+..+ ..++.++..+...+++++|..+++...+   .-.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            112345666677777777777766555544221    23333333 3456666777777888888877765433   111


Q ss_pred             CCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCC-CHhHHHHHHHHHHcCCChHHHHHHHHHHH---
Q 010830          286 FPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGI----GFNLMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMV---  353 (499)
Q Consensus       286 ~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~---  353 (499)
                      .++    ..+++.|-..|.+.|++++|+++++..+..    +....+ ....++.|...|.+.+.+++|.++|.+..   
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            122    357778888888888888888888776643    111112 34567777788888888887777776543   


Q ss_pred             -HCCC-CCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          354 -FHGA-FPD-SLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       354 -~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                       ..|. .|+ ..+|..|...|...|+++.|+++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             2332 223 2567788888888888888888877765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=9.7e-09  Score=93.17  Aligned_cols=155  Identities=14%  Similarity=0.138  Sum_probs=128.8

Q ss_pred             HhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830           89 QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM  168 (499)
Q Consensus        89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  168 (499)
                      +...|++..|...|+.+....+.+...|-.+...|....+.++.++.|+...+.++-+..+|..-.+.+.-.+++++|..
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            35578889999999988777776666788888999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      -|++.++.. +-+...|..+--+..+. +.++++...|++.++.++....+|+.....+...++++.|.+.|+...+
T Consensus       416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  416 DFQKAISLD-PENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHhhcC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999887653 33556666676777777 8888888888888888888888888888888888888888888887754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.20  E-value=3.5e-08  Score=93.72  Aligned_cols=243  Identities=12%  Similarity=0.089  Sum_probs=123.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC-----C-
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVER----FEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----N-  284 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-  284 (499)
                      -..+...+...|...|+++.|+.+++...+.    .|. .|.-....+.+...|...+++++|..+|+++...     | 
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~  277 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE  277 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            3455666777777888888888877777553    111 1211122333555666667777777777665431     1 


Q ss_pred             CCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC----CCCCCH-hHHHHHHHHHHcCCChHHHHHHHHHHHHC---
Q 010830          285 CFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGF----NLMPNL-IMYNAVIGLLCNNDDVDNVFRFFDQMVFH---  355 (499)
Q Consensus       285 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  355 (499)
                      ..|. ..+++.|-.+|.+.|++++|...++...+--.    ...|.+ ..++.+...|+..++++.|..++....+.   
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            1111 23444555566666666666666665543110    011111 22344455555566666666666544331   


Q ss_pred             CCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC--CC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          356 GAFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EW--QP-TPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       356 g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      -+.++    ..+++.|...|...|++++|+++++.++..    +-  .+ ....++.|...|.+.+.+++|.++|.+...
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            11111    134555666666666666666666655442    01  11 122344555555566666666666554432


Q ss_pred             ----CCC--CChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          425 ----NGI--LPLEASANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       425 ----~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                          .|.  +-...+|..|...|.+.|++++|.++.+...
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                111  1122445555566666666666666555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=2.5e-07  Score=80.88  Aligned_cols=377  Identities=11%  Similarity=0.032  Sum_probs=192.1

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      .|+.++|+..+..+.....++...+-.|.-.+.-.|.+.+|..+-....+    ++-.-..|+...-+.++-++.....+
T Consensus        70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~  145 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHS  145 (557)
T ss_pred             hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            36666666666666555556666666666555555666666555433221    22233344444455555555555555


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-LLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      .+...     ...--+|.+..... -.+.+|++++..+... .|+....|. +.-+|.+..-++-+.++++-..+.   .
T Consensus       146 ~LqD~-----~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~  215 (557)
T KOG3785|consen  146 SLQDT-----LEDQLSLASVHYMR-MHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---F  215 (557)
T ss_pred             HHhhh-----HHHHHhHHHHHHHH-HHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---C
Confidence            54321     11122233322223 4567777777776432 233334443 334556666677777777776554   5


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC--------------------------CCC-----HhhHHHHHHHH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--------------------------FPT-----LKFFSNALDIL  299 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li~~~  299 (499)
                      |+++...|.......+.=.-..|..-..++.+.+-                          -|.     ...-..++--|
T Consensus       216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy  295 (557)
T KOG3785|consen  216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY  295 (557)
T ss_pred             CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence            55555666555544444222222222222222110                          010     01112233445


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH-----HHcCCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 010830          300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL-----LCNNDDVDNVFRFFDQMVFHGAFPDSL-TYNMIFECLIK  373 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~  373 (499)
                      .+.+++.+|..+.+++..    ..|-....-.++.+     ........-|.+.|+-.-+.+..-|.. --.++..++.-
T Consensus       296 L~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL  371 (557)
T KOG3785|consen  296 LNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL  371 (557)
T ss_pred             cccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence            677788887777665432    12322222222211     112223445555555544444433332 23445555555


Q ss_pred             cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHH-HHHHHHhCCChHHHHH
Q 010830          374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE-LLVGLRNLGRLSDVRR  452 (499)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~  452 (499)
                      ..++++++.+++.+..--..-|...|+ +.++++..|++.+|+++|-.+....++ |..+|-. |.++|.+++.++-|..
T Consensus       372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~  449 (557)
T KOG3785|consen  372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD  449 (557)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH
Confidence            666777777777665543333333333 567777778888888887766544444 3344444 4467778888877766


Q ss_pred             HHHHHHHcCCccCHH-HHHHHHHHHHhcccc--hHHHHHHHH
Q 010830          453 FAEEMLNRRILIYEV-TMHKLKKAFYNESRS--MRDIFDSLE  491 (499)
Q Consensus       453 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~--a~~~~~~~~  491 (499)
                      ++-.+   +-..+.. ....+.+-|.+.++.  |.+.|+++-
T Consensus       450 ~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  450 MMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             HHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            55443   3222332 334445667777776  666666553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.16  E-value=6.2e-07  Score=84.69  Aligned_cols=200  Identities=13%  Similarity=0.036  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH--
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS--  187 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--  187 (499)
                      ...|..+...+...|+.+.+.+.+....+....+   ..........+...|++++|.+.++...+.. +.|...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            4455555555656666666666555555444322   1122223334556677777777777665541 222223221  


Q ss_pred             -HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830          188 -LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR  266 (499)
Q Consensus       188 -ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~  266 (499)
                       ........ +..+.+.+.++......+........+...+...|++++|.+.+++..+.   .|++...+..+...+..
T Consensus        85 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~  160 (355)
T cd05804          85 GAFGLGDFS-GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHhcccc-cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHH
Confidence             11111112 44444444444322222223344445556666777777777777777443   56566666666677777


Q ss_pred             CCCHHHHHHHHHHHhhCCC-CCCH--hhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          267 GKQVDEALKFLRVMKGENC-FPTL--KFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       267 ~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .|++++|...+++.....- .++.  ..|..+...+...|+.++|..++++...
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            7777777777766554321 1221  2333455566666666666666666543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.16  E-value=7.2e-08  Score=79.32  Aligned_cols=198  Identities=14%  Similarity=0.087  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      +..-|.-.|.+.|+...|..-+++..+.++.+..+|..+...|-+.|..+.|.+.|+...+.. +-+..+.|..-.-+|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            555667788999999999999999999988888899999999999999999999999887763 4456677777777888


Q ss_pred             cCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830          195 QENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE  272 (499)
Q Consensus       195 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~  272 (499)
                      . |.+++|...|++...  ...--..+|..+.-+..+.|+.+.|...|++..+.   .|+...+...+.....+.|++-.
T Consensus       116 q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         116 Q-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             C-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchH
Confidence            8 899999999988765  33344667888888888999999999999988554   66677788888999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      |...++.....+. ++....-..|+.-...|+.+.+.+.=.++.+.
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999988887765 78888888888888888888887776666664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.1e-07  Score=82.94  Aligned_cols=266  Identities=12%  Similarity=0.059  Sum_probs=134.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830          145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAIL  223 (499)
Q Consensus       145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  223 (499)
                      .++.....+.+.+...|+.++|...|+.....  .|+..+---+-.. +.+. |+.+....+...+-....-+..-|..-
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            44555556666666666666666666655432  2322221111111 1223 555555555444433333333334344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN  303 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  303 (499)
                      +......++++.|+.+-++..   ...|.+...|-.-...+...++.++|.-.|+..+... +-+...|..++.+|...|
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence            444444555666665555553   2344455455544555666666666666666554432 124456666666666666


Q ss_pred             CHhHHHHHHHHHHhcCCCCCCCHhHHHHHH-HHHH-cCCChHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHhHH
Q 010830          304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVI-GLLC-NNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEV  380 (499)
Q Consensus       304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a  380 (499)
                      ++.+|..+-....+.   ++.+..+.+.+. ..+. ...--++|.++++.-.+  +.|+- ...+.+...|...|..+.+
T Consensus       383 ~~kEA~~~An~~~~~---~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  383 RFKEANALANWTIRL---FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             hHHHHHHHHHHHHHH---hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence            666666555544433   233444444331 2221 12224556666655544  33443 2334444555566666666


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      +.++++.+..  .||....+.|.+.+...+.+++|.+.|....+
T Consensus       458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            6666665552  35556666666666666666666666665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=8.7e-08  Score=87.17  Aligned_cols=188  Identities=14%  Similarity=0.041  Sum_probs=124.2

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.+.|...|+.+.+..+.+...|+.+...+...|++++|.+.|+...+.++.+..+|..+...+...|++++|.+.
T Consensus        75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~  154 (296)
T PRK11189         75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD  154 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            45678888888888887777777888888888888888888888888888888777777888888888888888888888


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc--
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF--  247 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--  247 (499)
                      |+...+.  .|+..........+... ++.++|...|++......++...+ .+.  ....|+...+ +.+..+.+..  
T Consensus       155 ~~~al~~--~P~~~~~~~~~~l~~~~-~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~  227 (296)
T PRK11189        155 LLAFYQD--DPNDPYRALWLYLAESK-LDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATD  227 (296)
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHcc-CCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCC
Confidence            8887765  44433222222223334 778888888866544333333322 222  2234554443 2444443211  


Q ss_pred             --CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          248 --EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       248 --~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                        .+.|.....|..+...+.+.|++++|+..|++..+.+
T Consensus       228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence              1122234567777888888888888888888777655

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9.9e-07  Score=78.78  Aligned_cols=289  Identities=11%  Similarity=0.064  Sum_probs=200.0

Q ss_pred             cCChhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830          160 AGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK  238 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  238 (499)
                      .++...|...+-.+.... +.-|+.....+-..+... |+.+.|...|++.....+.+........-.+.+.|+++....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence            445555555554444332 344566677788888888 999999999998876544455444445555677888888888


Q ss_pred             HHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +...+...   .-.+...|-.-.......++++.|+.+-++..+.. .-+...|-.--..+...|+.++|.--|+..+..
T Consensus       288 L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  288 LMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             HHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            87777443   21134456666666777788999998888776644 123344444456677889999999889888875


Q ss_pred             CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHH-hcCCHhHHHHHHHHHHHCCCCCC-
Q 010830          319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIF-ECLI-KNKRVHEVEKFFHEMIKNEWQPT-  395 (499)
Q Consensus       319 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~p~-  395 (499)
                      .   +-+...|.-|+..|...|.+.+|..+-+...+. +..+..+...+. ..|. ....-++|.++++.-++..  |+ 
T Consensus       364 a---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y  437 (564)
T KOG1174|consen  364 A---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIY  437 (564)
T ss_pred             c---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--Ccc
Confidence            3   457889999999999999998888776655442 223444544442 2222 2233477888888776643  44 


Q ss_pred             hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      ....+.+...|...|..+.+..+++....  ..||....+.|.+.+...+.+++|.+.|...+..+
T Consensus       438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            33456677778888999999999988776  56888888889899988999999999888887553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=1.3e-07  Score=85.96  Aligned_cols=96  Identities=14%  Similarity=-0.050  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI  298 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  298 (499)
                      .|..+...|...|+.++|...|++..+   ..|++...|+.+...+...|++++|...|++..+.. +-+..++..+..+
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~  141 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            355555555555555555555555533   245555555555555555555555555555554432 1123344444444


Q ss_pred             HHHcCCHhHHHHHHHHHHhc
Q 010830          299 LVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       299 ~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +...|++++|.+.++...+.
T Consensus       142 l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            55555555555555555543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=9.4e-07  Score=83.45  Aligned_cols=306  Identities=10%  Similarity=-0.002  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHH-HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLS-AICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      ...|..+...+...|+.+.+.+.+....+.. ...+......+-. .+... |++++|..++++.....+.+...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence            4466666777777777777766666654332 1223222222222 22334 77778877777766655555545442 2


Q ss_pred             HHHH----hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830          225 EGWE----KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV  300 (499)
Q Consensus       225 ~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  300 (499)
                      ..+.    ..+..+.+.+.+...   ....|........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~  159 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE  159 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            2222    234444455444442   23345444455556667777777777777777777654 233455666677777


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCCH--hHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHhH-H--HHHHHHHhc
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPNL--IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLTY-N--MIFECLIKN  374 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~  374 (499)
                      ..|++++|...+++..+... ..++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  238 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWD-CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA  238 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccC-CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence            77777777777777666430 01222  2344566677777777777777777653211 1111111 1  222223333


Q ss_pred             CCHhHHHHH--HHHHHHCCCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCC------ChHHHHHHHH--HHHH
Q 010830          375 KRVHEVEKF--FHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGIL------PLEASANELL--VGLR  442 (499)
Q Consensus       375 g~~~~a~~~--~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~~~~~ll--~~~~  442 (499)
                      |..+.+.+.  +...........  .........++...|+.+.|..+++.+......      ....+-..++  .++.
T Consensus       239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~  318 (355)
T cd05804         239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF  318 (355)
T ss_pred             CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence            433333222  111111110101  111123445556667777777777766542211      0011111222  2244


Q ss_pred             hCCChHHHHHHHHHHHH
Q 010830          443 NLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       443 ~~g~~~~a~~~~~~m~~  459 (499)
                      ..|++++|.+.+.+...
T Consensus       319 ~~g~~~~A~~~L~~al~  335 (355)
T cd05804         319 AEGNYATALELLGPVRD  335 (355)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66777777777766654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.10  E-value=1.1e-05  Score=76.31  Aligned_cols=322  Identities=11%  Similarity=0.107  Sum_probs=164.7

Q ss_pred             CCchhHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ++.......|+.+.+..+.  ....|...+......|-++-+..+|++..+.   ++..-+..|..+++.+++++|.+.+
T Consensus       116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~l  192 (835)
T KOG2047|consen  116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRL  192 (835)
T ss_pred             chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHH
Confidence            3444455555554442222  2345666666666666666666666666555   3333555566666667777777666


Q ss_pred             HHHHhCC------CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccC--CCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 010830          171 DVMSMHG------VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPD--GDSFAILLEGWEKEGNVEEANKTF  240 (499)
Q Consensus       171 ~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~  240 (499)
                      ...+...      .+-+-..|+-+-...++. -+.-..+.+=.-++.|+  -+|  ...|++|.+.|.+.|.+++|..+|
T Consensus       193 a~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy  271 (835)
T KOG2047|consen  193 ATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY  271 (835)
T ss_pred             HHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            6664321      123344455555555544 22222222222222221  123  345777888888888888888888


Q ss_pred             HHHhHccCCCCchHHhHHHHHHHHhcCCC----------------------HHHHHHHHHHHhhCC-C----------CC
Q 010830          241 GEMVERFEWNPEHVLAYETFLITLIRGKQ----------------------VDEALKFLRVMKGEN-C----------FP  287 (499)
Q Consensus       241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~m~~~~-~----------~p  287 (499)
                      ++.....   . ++.-|+.+.++|..-..                      ++-.+.-|+.+.... +          ..
T Consensus       272 eeai~~v---~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~  347 (835)
T KOG2047|consen  272 EEAIQTV---M-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH  347 (835)
T ss_pred             HHHHHhh---e-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence            7776541   1 23334445455443211                      111122222222111 0          00


Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC------CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-
Q 010830          288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP------NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD-  360 (499)
Q Consensus       288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-  360 (499)
                      ++..|..-+  -...|+..+-...|.+..+.   +.|      -...|..+.+.|-..|+++.|..+|++..+-..+-- 
T Consensus       348 nV~eW~kRV--~l~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  348 NVEEWHKRV--KLYEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             cHHHHHhhh--hhhcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            111111111  11234555556666666554   223      234677788888888888888888888876432211 


Q ss_pred             --HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-----------------ChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          361 --SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-----------------TPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       361 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                        ..+|..-...-.++.+++.|+++++.....--.|                 +...|+.+++.--..|-++....+++.
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              2345554555556777888888777765421111                 122344444444455667777777777


Q ss_pred             HHHCCC
Q 010830          422 ILENGI  427 (499)
Q Consensus       422 m~~~~~  427 (499)
                      +.+..+
T Consensus       503 iidLri  508 (835)
T KOG2047|consen  503 IIDLRI  508 (835)
T ss_pred             HHHHhc
Confidence            765443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=3.3e-07  Score=80.13  Aligned_cols=330  Identities=11%  Similarity=0.076  Sum_probs=195.5

Q ss_pred             CCHHHHHHH-HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          111 LSPYAWNLM-VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       111 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      |+....+.| ....-+.++-++....-+.+.+.    ..---+|.......-.+.+|++++.+....  .|+-...|.-+
T Consensus       118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~  191 (557)
T KOG3785|consen  118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM  191 (557)
T ss_pred             CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence            333344444 44455556666665555555432    122344555555556789999999998765  56666666655


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc--CCH---------------------------------H
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE--GNV---------------------------------E  234 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~~---------------------------------~  234 (499)
                      ..|.-..+-++.+.++++...+..+.+....|..+....+.  |+.                                 +
T Consensus       192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE  271 (557)
T KOG3785|consen  192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE  271 (557)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence            54443327778888888777666666666555544433332  111                                 2


Q ss_pred             HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-----HcCCHhHHH
Q 010830          235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV-----KLNDSTHAV  309 (499)
Q Consensus       235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~  309 (499)
                      .|++++-.+.   .+.|   ..--.|+-.|.+.+++++|..+.+++.-  ..|-......+..+..     ....++.|.
T Consensus       272 gALqVLP~L~---~~IP---EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq  343 (557)
T KOG3785|consen  272 GALQVLPSLM---KHIP---EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ  343 (557)
T ss_pred             cHHHhchHHH---hhCh---HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence            2333332221   1223   2344566678889999999988876543  2344444433333221     112356677


Q ss_pred             HHHHHHHhcCCCCCCCHh-HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          310 QLWDIMVGIGFNLMPNLI-MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      +.|+..-..+  ..-|.. --.++...+.-..++++++-.++.....-..-|...| .+.++++..|.+.+|+++|-.+.
T Consensus       344 qffqlVG~Sa--~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is  420 (557)
T KOG3785|consen  344 QFFQLVGESA--LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS  420 (557)
T ss_pred             HHHHHhcccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc
Confidence            7777766665  333322 2344455555566788888888888775333344444 46788888999999999998776


Q ss_pred             HCCCCCChhhH-HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH-HHHHhCCChHHHHHHHHHHHHcC
Q 010830          389 KNEWQPTPLNC-ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL-VGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       389 ~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      ...++ |..+| ..|.++|.+++.++.|+.++-++   +-..+..+.-.+| +-|.+++.+--|.+.|+++...+
T Consensus       421 ~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  421 GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            55554 44455 45667888999999887765544   3233333333333 55778888888888887776543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.07  E-value=2.5e-07  Score=76.20  Aligned_cols=194  Identities=9%  Similarity=0.031  Sum_probs=115.6

Q ss_pred             HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830          188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG  267 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~  267 (499)
                      |--.|... |+...|.+-+++..+..+.+..+|..+...|.+.|+.+.|.+-|++..   .+.|++..+.|.....+|..
T Consensus        41 Lal~YL~~-gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          41 LALGYLQQ-GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHHHhC
Confidence            34455555 666666666666665555666666666666666666666666666663   33566666666666666666


Q ss_pred             CCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830          268 KQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF  346 (499)
Q Consensus       268 ~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  346 (499)
                      |++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++.++..   +-...+.-.+.....+.|++-.|.
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d---p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD---PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC---cCCChHHHHHHHHHHhcccchHHH
Confidence            66666666666655432 11223456666666666666666666666666653   223344555556666666666666


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      ..++.....+. ++..+....|+.--..|+.+.+-++=..+.+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            66666655544 5555555555555566666555555444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.07  E-value=7.8e-06  Score=78.98  Aligned_cols=376  Identities=14%  Similarity=0.062  Sum_probs=253.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHH
Q 010830          108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVN  186 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~  186 (499)
                      ...-|+..|..+.-++.+.|+++.+.+.|++....-......|..+...|...|.-..|..+++.-.... -.+|...+-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            4556788899999999999999999999999887766777889999999999999999999998765442 233455555


Q ss_pred             HHHHHHHccCCchHHHHHHHHHHhc--c---CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhHccCCC
Q 010830          187 SLLSAICRQENQTSRALEFLNRVKK--I---VDPDGDSFAILLEGWEKE-----------GNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       187 ~ll~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~  250 (499)
                      ..-..|.+..+..++++.+-.++.+  +   .......|..+.-+|...           ....++.+.+++..+.   .
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d  474 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D  474 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence            5556677666778887777666543  1   112233444444444321           2234677777777654   4


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC-----
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN-----  325 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----  325 (499)
                      |.|+.....+.--|...++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-   ..|     
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~  551 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMD  551 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhch
Confidence            445555555666777889999999999999887666788889888888999999999999998776542   111     


Q ss_pred             ---------------HhHHHHHHHHHHcC-----------------------CChHHHHHHHHHHH--------HCC---
Q 010830          326 ---------------LIMYNAVIGLLCNN-----------------------DDVDNVFRFFDQMV--------FHG---  356 (499)
Q Consensus       326 ---------------~~~~~~li~~~~~~-----------------------~~~~~a~~~~~~m~--------~~g---  356 (499)
                                     ..|...++..+-..                       ++..++.+....+.        ..|   
T Consensus       552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~  631 (799)
T KOG4162|consen  552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL  631 (799)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence                           11222222221100                       01111111111110        001   


Q ss_pred             ------CC--CCH------HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830          357 ------AF--PDS------LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       357 ------~~--p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  422 (499)
                            +.  |+.      ..|......+.+.+..++|...+.+..+.. .-....|......+...|..++|.+.|...
T Consensus       632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~A  710 (799)
T KOG4162|consen  632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVA  710 (799)
T ss_pred             ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence                  00  110      124455556777788888888887776543 334555666666777889999999999887


Q ss_pred             HHCCCCChHHHHHHHHHHHHhCCChHHHHH--HHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          423 LENGILPLEASANELLVGLRNLGRLSDVRR--FAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       423 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      ...+ +-++.+..++...+.+.|+..-|..  ++.++.+.+ .-+...|..+-..+-+.|+.  |.+.|+...+
T Consensus       711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            7633 2345677888889999998777777  999999876 34788999999999999998  7777776554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.06  E-value=5e-06  Score=77.00  Aligned_cols=376  Identities=10%  Similarity=0.102  Sum_probs=218.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830          108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS  187 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  187 (499)
                      ..+.|..+|+.||+-+... ..+++++.++++...-+-+...|..-|..-.+..+++..+.+|.+....  .-+...|..
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l   91 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL   91 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence            4778889999999877666 8899999999998887778888999999999999999999999887765  445666666


Q ss_pred             HHHHHHccCCchHHHHHH----HHHHhc--cCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          188 LLSAICRQENQTSRALEF----LNRVKK--IVDP-DGDSFAILLEG---------WEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~----~~~~~~--~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .|.-.-+..++...+...    |+-...  |+.+ +...|+..+..         |....+++...++++++... .+.-
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~n  170 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHN  170 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-cccc
Confidence            666544443444442222    222222  3222 22233333322         33344555666677666442 1110


Q ss_pred             -----chHHhHHHHHHHH-------hcCCCHHHHHHHHHHHhh--CCCCCCH----------------------------
Q 010830          252 -----EHVLAYETFLITL-------IRGKQVDEALKFLRVMKG--ENCFPTL----------------------------  289 (499)
Q Consensus       252 -----~~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~~~~p~~----------------------------  289 (499)
                           .|-..|..=|+..       -+...+..|.++++++..  .|+....                            
T Consensus       171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN  250 (656)
T KOG1914|consen  171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN  250 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence                 0111111111111       111234445555544432  2211100                            


Q ss_pred             ---------------hhHHHHH---------------------HHHHHcCC-------HhHHHHHHHHHHhcCCCCCCCH
Q 010830          290 ---------------KFFSNAL---------------------DILVKLND-------STHAVQLWDIMVGIGFNLMPNL  326 (499)
Q Consensus       290 ---------------~~~~~li---------------------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~  326 (499)
                                     .+|...+                     +.+...|+       .+++..+++..+..-  ...+.
T Consensus       251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l--~~~~~  328 (656)
T KOG1914|consen  251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL--LKENK  328 (656)
T ss_pred             CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH--HHHHH
Confidence                           1111111                     11112222       344445555444332  22233


Q ss_pred             hHHHHHHHHHHcC---CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 010830          327 IMYNAVIGLLCNN---DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNCATA  402 (499)
Q Consensus       327 ~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l  402 (499)
                      .+|..+...--..   ...+.....++++...-..--..+|...|+.-.+...++.|..+|.++.+.+..+ +...++++
T Consensus       329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~  408 (656)
T KOG1914|consen  329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL  408 (656)
T ss_pred             HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence            3343333221111   1255666666666653222223567788888888888899999999998886666 67777888


Q ss_pred             HHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH--HHHHHHHHHHHhcc
Q 010830          403 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKKAFYNES  480 (499)
Q Consensus       403 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g  480 (499)
                      +..+|. ++.+-|.++|+.-.+. +.-++..-...+.-+...++-..|..+|++....++.||.  ..|..+|..=..-|
T Consensus       409 mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG  486 (656)
T KOG1914|consen  409 MEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG  486 (656)
T ss_pred             HHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence            887764 7888899999865542 2233344556677778888888899999998888666554  67888888888888


Q ss_pred             cc--hHHHHHHHH
Q 010830          481 RS--MRDIFDSLE  491 (499)
Q Consensus       481 ~~--a~~~~~~~~  491 (499)
                      +.  +.++-+++.
T Consensus       487 dL~si~~lekR~~  499 (656)
T KOG1914|consen  487 DLNSILKLEKRRF  499 (656)
T ss_pred             cHHHHHHHHHHHH
Confidence            87  444444433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.96  E-value=1.3e-07  Score=84.76  Aligned_cols=151  Identities=21%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH---HHHHHHHHc
Q 010830          262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY---NAVIGLLCN  338 (499)
Q Consensus       262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~li~~~~~  338 (499)
                      ..+...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.+.+    .|....   .+.+..+..
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~l~qLa~awv~l~~g  179 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSILTQLAEAWVNLATG  179 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhC
Confidence            4445556666666555421      234444555566666666666666666665533    232211   222222222


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh-hHHHH
Q 010830          339 NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EIAIE  417 (499)
Q Consensus       339 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~  417 (499)
                      .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+... -+..+...++-+....|+. +.+.+
T Consensus       180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~  257 (290)
T PF04733_consen  180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAER  257 (290)
T ss_dssp             TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHH
Confidence            34566666666666543 445666666666666666666666666666554431 2344444555555555555 44555


Q ss_pred             HHHHHHH
Q 010830          418 IWNYILE  424 (499)
Q Consensus       418 ~~~~m~~  424 (499)
                      .+..+..
T Consensus       258 ~l~qL~~  264 (290)
T PF04733_consen  258 YLSQLKQ  264 (290)
T ss_dssp             HHHHCHH
T ss_pred             HHHHHHH
Confidence            5555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.96  E-value=2e-05  Score=69.01  Aligned_cols=192  Identities=10%  Similarity=0.109  Sum_probs=99.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL  302 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  302 (499)
                      .+..+.-.|+...|+.....+.+   +.|=|...|..-..+|...|++..|+.-++..-+..- -+..++--+-..+...
T Consensus       161 ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  161 QLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhh
Confidence            34445566777777777777744   3554666666777777777777777766655444332 2344444555666677


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHH-------------HHHHHcCCChHHHHHHHHHHHHCCCCCCHH---hHHH
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAV-------------IGLLCNNDDVDNVFRFFDQMVFHGAFPDSL---TYNM  366 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~  366 (499)
                      |+.+.++...++.++.+    ||-..+-..             +......+++.++++-.+...+........   .+..
T Consensus       237 gd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~  312 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV  312 (504)
T ss_pred             hhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence            77777777777776643    443322111             011123344444444444444432111111   1222


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          367 IFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      +-.++...|++.+|++.-.+.++..  |+ ..++.--..+|.....++.|+.=|+...+
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            3334444555555555555555422  22 44444445555555555555555555554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=1.1e-05  Score=69.26  Aligned_cols=318  Identities=14%  Similarity=0.046  Sum_probs=200.5

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      .+..+|.++.....+..+.+....+.+..+|-...++..|-+.|+++....+.-..-----.+.+.+.+.+.+|+++...
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            45667777776665656668888888989999999999999999998876542222222234567778899999999988


Q ss_pred             HHhCCCCcCHHHHHHHHHH--HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          173 MSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       173 m~~~g~~p~~~~~~~ll~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      |...   ++...-..-+.+  .... +++..+..+.++...  ..+..+.+...-...+.|+++.|.+-|+...+-.|..
T Consensus       104 ~~D~---~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  104 LLDN---PALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             hcCC---HHHHHHHHHHHHHHhccc-ccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            8642   332222222222  2234 888888888888763  2344555555556678999999999999998877888


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-------------CH---------------hhHHHHHHHHHHc
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-------------TL---------------KFFSNALDILVKL  302 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~---------------~~~~~li~~~~~~  302 (499)
                      | - ..||..+. ..+.|+++.|++...++.++|++-             |.               ..||.-...+.+.
T Consensus       178 p-l-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~  254 (459)
T KOG4340|consen  178 P-L-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL  254 (459)
T ss_pred             c-h-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence            7 3 46776554 456689999999999998877542             11               1122222334567


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK  382 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  382 (499)
                      |+.+.|.+-+..|-.+.. ...|.+|...+.-.-. .+++.+..+-+.-+...+. -...||..++-.||++.-++.|-+
T Consensus       255 ~n~eAA~eaLtDmPPRaE-~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAAD  331 (459)
T KOG4340|consen  255 RNYEAAQEALTDMPPRAE-EELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAAD  331 (459)
T ss_pred             ccHHHHHHHhhcCCCccc-ccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHH
Confidence            788888877777654321 2346666555433222 3344444555555555433 234678888888999988888888


Q ss_pred             HHHHHHHCCC-CCChhhHHHHHHHHh-ccCChhHHHHHHHHHH
Q 010830          383 FFHEMIKNEW-QPTPLNCATAITMLL-DADEPEIAIEIWNYIL  423 (499)
Q Consensus       383 ~~~~~~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~  423 (499)
                      ++.+--.... -.+...|+. +.++. ..-..+++.+-++.+.
T Consensus       332 vLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  332 VLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence            7765322211 123333443 33333 3356666666555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.91  E-value=5.5e-05  Score=73.37  Aligned_cols=378  Identities=12%  Similarity=0.032  Sum_probs=251.3

Q ss_pred             CCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCHHHHHH
Q 010830           77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFAS  152 (499)
Q Consensus        77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~  152 (499)
                      +.-++..+..+--  .+.|+...+-+.|+......--....|+.+-..+...|.-..|+.+.+.-....  +++...+-.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            3445555554433  567899999999998877777778899999999999999999999998887766  556666666


Q ss_pred             HHHHHHh-cCChhHHHHHHHHHHhC--CC--CcCHHHHHHHHHHHHcc---C-------CchHHHHHHHHHHhccCCCCH
Q 010830          153 IFDSYCG-AGKYDEAVMSFDVMSMH--GV--EQDVVAVNSLLSAICRQ---E-------NQTSRALEFLNRVKKIVDPDG  217 (499)
Q Consensus       153 li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~---~-------~~~~~a~~~~~~~~~~~~~~~  217 (499)
                      .-..|.+ .+.++++++.-.+....  |.  ......|..+--+|...   .       ....++.+.+++..+..+.|.
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp  478 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP  478 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            6666654 46777777777666551  11  12233333333333221   0       123456666666655444555


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCCC---------
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFP---------  287 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p---------  287 (499)
                      .+...+.--|+..++++.|.+...+..+- + .-++...|..+.-.+...+++.+|+.+.+.... .|..-         
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l-~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALAL-N-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            55555566688889999999999998663 2 223778999999999999999999999987554 33100         


Q ss_pred             ---------CHhhHHHHHHHHHH---------c--------------CCHhHHHHHHHHHH--------hcCC-------
Q 010830          288 ---------TLKFFSNALDILVK---------L--------------NDSTHAVQLWDIMV--------GIGF-------  320 (499)
Q Consensus       288 ---------~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~--------~~~~-------  320 (499)
                               ...|+..++..+-.         .              ++..++......+.        ..++       
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s  636 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS  636 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence                     01222222222210         0              01111111111110        0110       


Q ss_pred             CCCC--C------HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010830          321 NLMP--N------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW  392 (499)
Q Consensus       321 ~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  392 (499)
                      ...|  +      ...|......+.+.+..++|...+.+.... .......|......+...|..++|.+.|....... 
T Consensus       637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-  714 (799)
T KOG4162|consen  637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-  714 (799)
T ss_pred             cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence            0111  1      234556667778888888888888777664 23344566666677788899999999999888754 


Q ss_pred             CC-ChhhHHHHHHHHhccCChhHHHH--HHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          393 QP-TPLNCATAITMLLDADEPEIAIE--IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       393 ~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                       | +....+++...+.+.|+...|..  ++.++.+.+ ..+...|..+-..+.+.|+.++|.+.|....+.
T Consensus       715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence             4 34567889999999998888888  999999877 457789999999999999999999999987754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.90  E-value=6e-05  Score=70.12  Aligned_cols=174  Identities=9%  Similarity=0.107  Sum_probs=128.1

Q ss_pred             HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 010830          305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKF  383 (499)
Q Consensus       305 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~  383 (499)
                      .+....++++++..-. ..| ..+|..+|..-.+..-+..|..+|.+..+.+..+ ++..++++|.-+|. ++.+-|.++
T Consensus       347 ~~~~~~~~~~ll~~~~-~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI  423 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIED-IDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI  423 (656)
T ss_pred             hhhhHHHHHHHHhhhc-cCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence            5566666766665431 233 4567788888888888999999999999988777 77888888887765 677899999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH--HHHHHHHHHHHhCCChHHHHHHHHHHHHc-
Q 010830          384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE--ASANELLVGLRNLGRLSDVRRFAEEMLNR-  460 (499)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-  460 (499)
                      |+.=++. +.-+..-....+..+...++-..+..+|+.....++.++.  .+|..+|.--..-|+...+.++-+++... 
T Consensus       424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af  502 (656)
T KOG1914|consen  424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF  502 (656)
T ss_pred             HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            9876654 2234445566777888889999999999999987665544  78999999989999999999998887643 


Q ss_pred             --CCccCHHHHHHHHHHHHhcccc
Q 010830          461 --RILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       461 --~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                        ...+...+-..+++-|.-.+..
T Consensus       503 ~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  503 PADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             chhhcCCCChHHHHHHHHhhcccc
Confidence              1233334445555555555544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.89  E-value=1.9e-07  Score=83.70  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH---
Q 010830          225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK---  301 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---  301 (499)
                      ..+...|++++|++++...        .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..++..   
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~  178 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLAT  178 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHh
Confidence            3344445555555444322        133344445555555555555555555555432  12 223333333322   


Q ss_pred             -cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-hH
Q 010830          302 -LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRV-HE  379 (499)
Q Consensus       302 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~  379 (499)
                       .+.+.+|..+|+++.+.   ..++..+.|.+..++...|++++|.+++.+..+... -+..+...++.+....|+. +.
T Consensus       179 g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~  254 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEA  254 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHH
T ss_pred             CchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhH
Confidence             22355555555554443   234555555555555555555555555555443321 1333444444444444544 34


Q ss_pred             HHHHHHHHHH
Q 010830          380 VEKFFHEMIK  389 (499)
Q Consensus       380 a~~~~~~~~~  389 (499)
                      +.+++.++..
T Consensus       255 ~~~~l~qL~~  264 (290)
T PF04733_consen  255 AERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHCHH
T ss_pred             HHHHHHHHHH
Confidence            4455555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=3.4e-06  Score=72.17  Aligned_cols=294  Identities=11%  Similarity=0.064  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL-LSAIC  193 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~  193 (499)
                      -+++.+..+.+..+++.|++++..-.++.+.+......|..+|....++..|-..++.+-..  .|...-|... ...+.
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            36677777889999999999999998888878888999999999999999999999999765  5666655533 33455


Q ss_pred             ccCCchHHHHHHHHHHhccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHH
Q 010830          194 RQENQTSRALEFLNRVKKIVDPDGDS--FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD  271 (499)
Q Consensus       194 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~  271 (499)
                      +. +.+..|+.+...|...  ++...  ...-.......+++-.+..++++.... +    +..+.+.......+.|+++
T Consensus        90 ~A-~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n----~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   90 KA-CIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-N----EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             Hh-cccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-C----ccchhccchheeeccccHH
Confidence            66 8899999999888753  22222  111122234578888899999888642 1    4556666677778999999


Q ss_pred             HHHHHHHHHhhC-CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC-----------CH-------------
Q 010830          272 EALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP-----------NL-------------  326 (499)
Q Consensus       272 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~-------------  326 (499)
                      .|.+-|+...+- |..| ...|+..+ +..+.|+.+.|.+...+++++|..-.|           |+             
T Consensus       162 aAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa  239 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA  239 (459)
T ss_pred             HHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence            999999998774 5544 56677655 445678999999999999988722112           11             


Q ss_pred             --hHHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 010830          327 --IMYNAVIGLLCNNDDVDNVFRFFDQMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI  403 (499)
Q Consensus       327 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  403 (499)
                        ..+|.-...+.+.|+++.|.+-+-.|.-. .-..|++|...+.-.= ..+++.+..+-+.-+..... ....||..++
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL  317 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL  317 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence              12232333456788999999988888632 2345677766543221 24556666666777776643 3467899999


Q ss_pred             HHHhccCChhHHHHHHHHH
Q 010830          404 TMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       404 ~~~~~~g~~~~a~~~~~~m  422 (499)
                      -.||+..-++.|-.++.+-
T Consensus       318 llyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  318 LLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHHhhhHHHhHHHHHHhhC
Confidence            9999999888888877643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.88  E-value=1.7e-05  Score=84.99  Aligned_cols=339  Identities=10%  Similarity=0.050  Sum_probs=185.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-------CC--HHHHHHHHHH
Q 010830          156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-------PD--GDSFAILLEG  226 (499)
Q Consensus       156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~ll~~  226 (499)
                      .....|+++.+..+++.+.......+..........+... |+++++..+++.......       +.  ......+...
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            3445667777666666552111111111222223333445 888888888877643211       11  1222233445


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHH
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FPTLKFFSNALDIL  299 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~  299 (499)
                      +...|++++|...+++..+.......  .....+.+...+...|++++|...+++....    |- .....++..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            56788888888888877552111100  1124455666677788888888888776542    11 01122344556667


Q ss_pred             HHcCCHhHHHHHHHHHHhc----CCC-CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCC--CHHhHHHHHHH
Q 010830          300 VKLNDSTHAVQLWDIMVGI----GFN-LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFP--DSLTYNMIFEC  370 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~ll~~  370 (499)
                      ...|+++.|...+++....    +.. .......+..+...+...|++++|...+.+....  ...+  ....+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            7888888888887776542    100 0112233445556667778888888888776542  1112  12334445556


Q ss_pred             HHhcCCHhHHHHHHHHHHHC--CCCCChh--hH--HHHHHHHhccCChhHHHHHHHHHHHCCCCCh---HHHHHHHHHHH
Q 010830          371 LIKNKRVHEVEKFFHEMIKN--EWQPTPL--NC--ATAITMLLDADEPEIAIEIWNYILENGILPL---EASANELLVGL  441 (499)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~  441 (499)
                      +...|+.++|...++.....  .......  ..  ...+..+...|+.+.|.+++...........   ...+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            67788888888888777542  1111000  00  1112334456788888887765443211111   11133455667


Q ss_pred             HhCCChHHHHHHHHHHHHc----CCccC-HHHHHHHHHHHHhcccc--hHHHHHHHHHHHh
Q 010830          442 RNLGRLSDVRRFAEEMLNR----RILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERRCK  495 (499)
Q Consensus       442 ~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~  495 (499)
                      ...|++++|...+++....    |...+ ..+...+-.++.+.|+.  |.+.+.+.++...
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            7788888888888877642    22222 23455566667777776  7777776665543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=5.8e-05  Score=70.25  Aligned_cols=374  Identities=11%  Similarity=0.092  Sum_probs=238.3

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+.+.|...|-.+....++|...|+.-..+|+..|++++|++=-.+-.+..+.-...|+-...++.-.|++++|+.-
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            45789999999999888878889999999999999999999998877777777766667899999999999999999999


Q ss_pred             HHHHHhCCCCcC-HHHHHHHHHHHHccCCchHHHHHHHH------HHhc----cCCCCHHHHHHHHHHHHhc--------
Q 010830          170 FDVMSMHGVEQD-VVAVNSLLSAICRQENQTSRALEFLN------RVKK----IVDPDGDSFAILLEGWEKE--------  230 (499)
Q Consensus       170 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~------~~~~----~~~~~~~~~~~ll~~~~~~--------  230 (499)
                      |.+=++.  .|+ ...++-+..++...   ... .+.|.      .+..    ........|..++..+-+.        
T Consensus        93 y~~GL~~--d~~n~~L~~gl~~a~~~~---~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   93 YSEGLEK--DPSNKQLKTGLAQAYLED---YAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHhhc--CCchHHHHHhHHHhhhHH---HHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            9987765  444 44455555554111   100 11111      1100    0000111222222222111        


Q ss_pred             --CCHHHHHHHHHHHh-----H------ccCCCC------------c---------hHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          231 --GNVEEANKTFGEMV-----E------RFEWNP------------E---------HVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       231 --g~~~~a~~~~~~~~-----~------~~~~~p------------~---------~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                        ..+..+.-.+....     .      ..+..|            +         -..-...+.+...+..++..|++-
T Consensus       167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~  246 (539)
T KOG0548|consen  167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH  246 (539)
T ss_pred             ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence              01111111111000     0      001111            0         112355677788888889999998


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH-------HHHHHHcCCChHHHHHHH
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA-------VIGLLCNNDDVDNVFRFF  349 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~  349 (499)
                      +....+..  -+..-++..-.+|...|....+...-....+.|.   -...-|+.       +..+|.+.++++.++..|
T Consensus       247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr---e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR---ELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH---HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            88877765  4555566667778888888877777766666652   12222332       333566677888999998


Q ss_pred             HHHHHCCCCCCHHhH-------------------------HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010830          350 DQMVFHGAFPDSLTY-------------------------NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT  404 (499)
Q Consensus       350 ~~m~~~g~~p~~~~~-------------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  404 (499)
                      .+....-..|+...=                         ..-...+.+.|++..|...|.++++.. +-|...|....-
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence            887765445544331                         112344667899999999999999876 457888999999


Q ss_pred             HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830          405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  478 (499)
                      +|.+.|.+..|..=.+..++.. ++....|.-=..++.-..++++|.+.|++.++.+  |+..-+..-+.-|..
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence            9999999999988877777643 2223333333344445578899999999888765  555555555555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.84  E-value=4.5e-06  Score=85.49  Aligned_cols=227  Identities=9%  Similarity=0.080  Sum_probs=142.6

Q ss_pred             CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC-CCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      .|++...|-..|......++.++|.++.++.... ++.-.   ...|.++++.-..-|.-+...++|+++.+..    ..
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DA 1529 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----ch
Confidence            4555666666666666777777777776665542 11111   2345555555555566666777777776643    23


Q ss_pred             HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 010830          326 LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAIT  404 (499)
Q Consensus       326 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~  404 (499)
                      -..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.++++.-.+ -......-.+.
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence            456677777777777777777777777764 3345566777777777777777777777777664211 12223344445


Q ss_pred             HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH--HHHHHHHHHHHhcccc
Q 010830          405 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKKAFYNESRS  482 (499)
Q Consensus       405 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~  482 (499)
                      .-.+.|+.+++..+|+.....- +--...|+.+++.-.++|+.+.+..+|++..+.++.|-.  ..|...++.=-..|+.
T Consensus      1609 LEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred             HHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence            5556777777777777766432 223457777777777777777777777777777766543  4566666655555655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.80  E-value=0.00012  Score=78.51  Aligned_cols=338  Identities=11%  Similarity=-0.020  Sum_probs=208.5

Q ss_pred             HHHhCCChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C----CcCHH-HHHHHH-HHH
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--V----EQDVV-AVNSLL-SAI  192 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~-~~~~ll-~~~  192 (499)
                      .+...|+++.+...++.+.... ..+..........+...|++++|..++......-  .    .+... ....+. ..+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            3444567776666665552211 1122223444555678899999999998775431  0    11111 111222 233


Q ss_pred             HccCCchHHHHHHHHHHhccCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDP-D----GDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITL  264 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~  264 (499)
                      ... |+++.|...++........ +    ....+.+...+...|++++|...+++.....   +-......++..+...+
T Consensus       463 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        463 IND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HhC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            455 9999999999886542221 1    2345566777888999999999998876421   11110123455667788


Q ss_pred             hcCCCHHHHHHHHHHHhh----CCCC--C-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHH
Q 010830          265 IRGKQVDEALKFLRVMKG----ENCF--P-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGL  335 (499)
Q Consensus       265 ~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~  335 (499)
                      ...|++++|...+++...    .+..  + ....+..+...+...|++++|...+++.........+  ....+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            899999999999887654    2211  1 1233445556677789999999999887653200112  23445556677


Q ss_pred             HHcCCChHHHHHHHHHHHHCCC-CCCHHhH-----HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh---hhHHHHHHHH
Q 010830          336 LCNNDDVDNVFRFFDQMVFHGA-FPDSLTY-----NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITML  406 (499)
Q Consensus       336 ~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~  406 (499)
                      +...|+.+.|.+.+++...... ......+     ...+..+...|+.+.|...+............   ..+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            8889999999999988754211 0111111     11224455688999999988775542211111   1134566778


Q ss_pred             hccCChhHHHHHHHHHHH----CCCCCh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          407 LDADEPEIAIEIWNYILE----NGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       407 ~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ...|+.++|...++....    .|...+ ..+...+..++.+.|+.++|...+.+..+.
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888999999999988764    233222 234555667788999999999999998865

>PF12854 PPR_1: PPR repeat

Probab=98.77  E-value=9.9e-09  Score=58.49  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      .|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3677788888888888888888888888877773

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=0.00029  Score=70.46  Aligned_cols=295  Identities=14%  Similarity=0.129  Sum_probs=155.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHH---------------------------HHh
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDS---------------------------YCG  159 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~---------------------------~~~  159 (499)
                      ..|+..-+..++++...+-+.+.+++++.+.-.+.   .+...-|.||-.                           +..
T Consensus       981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen  981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred             cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence            34555555666677777777777777766655441   122233333333                           333


Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830          160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT  239 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  239 (499)
                      .+-+++|..+|+..     ..+....+.|+..    -+..++|.++-++..     ...+|..+..+-.+.|.+.+|.+-
T Consensus      1061 ~~LyEEAF~ifkkf-----~~n~~A~~VLie~----i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKF-----DMNVSAIQVLIEN----IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             hhHHHHHHHHHHHh-----cccHHHHHHHHHH----hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHH
Confidence            34444444444433     2222232333222    144444444444332     345666666776677777666655


Q ss_pred             HHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830          240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG  319 (499)
Q Consensus       240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  319 (499)
                      |-+.        +|+..|..+++...+.|.|++-.+++...++..-.|..  =+.+|-+|++.+++.+.++++       
T Consensus      1127 yika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi------- 1189 (1666)
T KOG0985|consen 1127 YIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI------- 1189 (1666)
T ss_pred             HHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------
Confidence            5332        24556777777777777777777776655555544433  235666777777666655443       


Q ss_pred             CCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhH
Q 010830          320 FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC  399 (499)
Q Consensus       320 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  399 (499)
                        .-||......+.+-|...+.++.|.-+|...         .-|..+...+...|+++.|.+.-++.      -+..||
T Consensus      1190 --~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1190 --AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred             --cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence              2355555555666666666666665555433         23555666666666666665544332      234455


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830          400 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM  457 (499)
Q Consensus       400 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  457 (499)
                      ..+-.+|...+.+.-|     .|...++.....-...++.-|...|.+++.+.+++..
T Consensus      1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred             HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence            5555555544433222     2222233333344455555566666666655555543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=0.00015  Score=68.34  Aligned_cols=357  Identities=12%  Similarity=0.090  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHH-
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL--LSA-  191 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~-  191 (499)
                      ..-+=+..+...|++++|.+..+.+...++.+...+..=+-+.++.++|++|+.+.+.-.      -..+++..  =.+ 
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAY   87 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAY   87 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHH
Confidence            334456778889999999999999999988888899999999999999999996655422      11222222  233 


Q ss_pred             -HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          192 -ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       192 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                       ..+. +..++|+..++....   .+..+...-...+.+.|++++|.++|+.+.++ +..     .+...+.+-+-.-  
T Consensus        88 c~Yrl-nk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~d-----d~d~~~r~nl~a~--  155 (652)
T KOG2376|consen   88 CEYRL-NKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSD-----DQDEERRANLLAV--  155 (652)
T ss_pred             HHHHc-ccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCc-----hHHHHHHHHHHHH--
Confidence             3456 889999998883332   34456777778899999999999999999875 322     2222221111000  


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHH---HHHHHcCCHhHHHHHHHHHHhcC-------CCCCCCH-----hHHHHHHHH
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNAL---DILVKLNDSTHAVQLWDIMVGIG-------FNLMPNL-----IMYNAVIGL  335 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~-----~~~~~li~~  335 (499)
                      ..+... ..+......| ..+|..+.   ..+...|++.+|+++++...+.+       ....-+.     ..--.+...
T Consensus       156 ~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV  233 (652)
T KOG2376|consen  156 AAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV  233 (652)
T ss_pred             HHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence            000000 0122222222 22333332   23345567777777766662211       0000000     011223334


Q ss_pred             HHcCCChHHHHHHHHHHHHCCCCCCHHh----HHHHHHHHH---------------------------------------
Q 010830          336 LCNNDDVDNVFRFFDQMVFHGAFPDSLT----YNMIFECLI---------------------------------------  372 (499)
Q Consensus       336 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~---------------------------------------  372 (499)
                      +-..|+.++|..++....+... +|...    -|.++..-.                                       
T Consensus       234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N  312 (652)
T KOG2376|consen  234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN  312 (652)
T ss_pred             HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777766665432 22211    111110000                                       


Q ss_pred             ------hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC
Q 010830          373 ------KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILPLEASANELLVGLRNL  444 (499)
Q Consensus       373 ------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  444 (499)
                            ..+..+.+.++-...  -+..|. ..+.+++..+.+.  .....+.+++....+..-.-...+.-.++......
T Consensus       313 ~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~  389 (652)
T KOG2376|consen  313 NALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ  389 (652)
T ss_pred             HHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence                  001111111111110  022232 3344444444322  23566777776665533222234555566777889


Q ss_pred             CChHHHHHHHH--------HHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhhc
Q 010830          445 GRLSDVRRFAE--------EMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRCKTS  497 (499)
Q Consensus       445 g~~~~a~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~~~  497 (499)
                      |+++.|.+++.        .+.+.+..|-  +...+..-+.+.++.  |.+++++.++-|+..
T Consensus       390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~  450 (652)
T KOG2376|consen  390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ  450 (652)
T ss_pred             CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            99999999998        5555555444  444444445554444  889999998888765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=2.8e-06  Score=79.41  Aligned_cols=248  Identities=14%  Similarity=0.080  Sum_probs=161.3

Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE  272 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~  272 (499)
                      .+. |++.+|.-.|+...+..+-+...|.-|.......++-..|+..+++.   +.+.|+|....-.|.-.|...|.-..
T Consensus       296 m~n-G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rc---l~LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  296 MKN-GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRC---LELDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             Hhc-CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHH---HhcCCccHHHHHHHHHHHhhhhhHHH
Confidence            345 77888888888877766777888888888888888888888887777   45588888888888888888888888


Q ss_pred             HHHHHHHHhhCCCC-----C---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHH
Q 010830          273 ALKFLRVMKGENCF-----P---TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN  344 (499)
Q Consensus       273 a~~~~~~m~~~~~~-----p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  344 (499)
                      |++.++.-.....+     +   +...-..  ..+.....+.+..++|-++..... ..+|..++..|.-.|.-.|++++
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcchHHHH
Confidence            88888776443210     0   0000000  111112223344455544443321 34677777778778888888888


Q ss_pred             HHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830          345 VFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       345 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m  422 (499)
                      |.+.|+.....  +| |..+||.|...++...+.++|+.-|+++++.  .|+ +...-.|.-+|...|.+++|.+.|-..
T Consensus       449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            88888888773  44 4567888888888888888888888888774  343 223334566677888888888777655


Q ss_pred             HH---C------CCCChHHHHHHHHHHHHhCCChHHHH
Q 010830          423 LE---N------GILPLEASANELLVGLRNLGRLSDVR  451 (499)
Q Consensus       423 ~~---~------~~~p~~~~~~~ll~~~~~~g~~~~a~  451 (499)
                      +.   .      +..++..+|.+|=.++.-.++.|-+.
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            42   1      11223456666665666566655443

>PLN02789 farnesyltranstransferase

Probab=98.72  E-value=2.4e-05  Score=71.20  Aligned_cols=138  Identities=7%  Similarity=0.003  Sum_probs=63.4

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc--
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ--  198 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--  198 (499)
                      .+...++.++|+.+++.+.+.++.+..+|+..-..+...| +++++++.++.+.+.. +-+..+|+..-..+.+. |.  
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l-~~~~  123 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL-GPDA  123 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc-Cchh
Confidence            3444455555555555555555544445554444444444 3455555555554432 22222333222222222 22  


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL  264 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~  264 (499)
                      .++++.+++++.+..+.|..+|+...-++.+.|+++++++.++++.+.   .|.|..+|+.....+
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl  186 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVI  186 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHH
Confidence            134444444444444445555555555555555555555555555432   333444444444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=3.9e-06  Score=78.46  Aligned_cols=218  Identities=17%  Similarity=0.120  Sum_probs=153.3

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|+...|.-+|+-+....+-+..+|-.|....+..++-..|+..+.+..+.++.+....-.|.-.|...|.-..|.+++
T Consensus       297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L  376 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML  376 (579)
T ss_pred             hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            45677788888887777777788888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhCCCC--------cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830          171 DVMSMHGVE--------QDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTF  240 (499)
Q Consensus       171 ~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  240 (499)
                      +.......+        ++...-+.  ..+... ..+....++|-.+..  +...|..+...|.-.|--.|++++|.+.|
T Consensus       377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            877543200        00000000  111111 234445555555543  33477777888888888888888888888


Q ss_pred             HHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830          241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHAVQLWDIMV  316 (499)
Q Consensus       241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~  316 (499)
                      +..   +.++|.|...||-|...+....+..+|+..|.+..+..  |+- .....|.-+|...|.+++|.+.|-..+
T Consensus       454 ~~A---L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  454 EAA---LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHH---HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            888   45588888888888888888888888888888877643  442 222334456777888888887776655

>PF12854 PPR_1: PPR repeat

Probab=98.71  E-value=2.5e-08  Score=56.84  Aligned_cols=32  Identities=41%  Similarity=0.644  Sum_probs=17.1

Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 010830          356 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM  387 (499)
Q Consensus       356 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  387 (499)
                      |+.||..||++||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.70  E-value=4e-06  Score=73.97  Aligned_cols=187  Identities=10%  Similarity=-0.015  Sum_probs=109.6

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH---
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV---  183 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---  183 (499)
                      ......+..+...+...|+++.|...|+++....+.+.   .++..+...+...|++++|...++++.+.  .|+..   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~  107 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD  107 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence            34566777778888888888888888888877765443   46677888888888888888888888765  23211   


Q ss_pred             -HHHHHHHHHHcc-------CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH
Q 010830          184 -AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL  255 (499)
Q Consensus       184 -~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~  255 (499)
                       ++..+-.++...       .|+.+.|.+.++.+.+..+.+...+..+...              ..+...      -..
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~------~~~  167 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR------LAG  167 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH------HHH
Confidence             232222233221       1456777777777655433333332221111              000000      000


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ....+...+.+.|++++|+..+++..+..  .+.....+..+..++.+.|+.++|..+++.+...
T Consensus       168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            11234455667777777777777666542  1122455666677777777777777776666553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.68  E-value=4.4e-05  Score=69.53  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=47.5

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH--HHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV--DEA  273 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~--~~a  273 (499)
                      +..++|+.+.+++....+-+..+|+..-..+...| ++++++..++++.+.   .|.+..+|+.....+.+.|+.  +++
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---npknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---NPKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---CCcchHHhHHHHHHHHHcCchhhHHH
Confidence            34444444444443333333333333333333333 344444444444332   333444444333333333321  334


Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +.+++++.+.. .-+..+|+...-++...|+++++++.++++++.
T Consensus       128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44444444332 123344444444444444444444444444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.67  E-value=1.9e-05  Score=81.09  Aligned_cols=242  Identities=12%  Similarity=0.104  Sum_probs=162.7

Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC---cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVE---QDVVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      |++.....+.+...|-..|......++.++|.+++++.... ++.   --...|.++++.--.. |.-+...++|+++.+
T Consensus      1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHH
Confidence            33444444444555555555555566666666666555432 111   1123455555554445 666667777777655


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---
Q 010830          212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---  288 (499)
Q Consensus       212 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---  288 (499)
                      -. ....+|..|...|.+.+.+++|.++++.|.++++-   ....|...+..+.+.++-+.|..++.+..+.-  |.   
T Consensus      1526 yc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eH 1599 (1710)
T KOG1070|consen 1526 YC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEH 1599 (1710)
T ss_pred             hc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhh
Confidence            22 22456778888888888889999999998887662   44578888888888888888888888766532  32   


Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHH
Q 010830          289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS--LTYNM  366 (499)
Q Consensus       289 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~  366 (499)
                      .....-.+..-.+.|+.+.+..+|+..+..   .+.-...|+..|+.-.+.|+.+.++.+|++....++.|-.  ..|..
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a---yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA---YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhh---CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence            333444555667889999999999988876   3556788999999999999999999999999988776654  46677


Q ss_pred             HHHHHHhcCCHhHHHHHHHHH
Q 010830          367 IFECLIKNKRVHEVEKFFHEM  387 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~  387 (499)
                      .+..--+.|+-+.++.+=.++
T Consensus      1677 wLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred             HHHHHHhcCchhhHHHHHHHH
Confidence            776666667755544443333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.62  E-value=1e-05  Score=68.44  Aligned_cols=152  Identities=12%  Similarity=0.023  Sum_probs=122.2

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|+.+....+........+.|....+.++....+.|++..|...|.+.....++|..+|+.+.-+|.+.|+++.|..-|
T Consensus        78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay  157 (257)
T COG5010          78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY  157 (257)
T ss_pred             hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHH
Confidence            35777777777776666677788888889999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      .+..+.- .-+...+|.+.-.+.-. |+.+.|..++........-|..+-..+.......|++++|.++...-.
T Consensus       158 ~qAl~L~-~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         158 RQALELA-PNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHhc-cCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            8887763 22344555555555556 889999999888877666678888888888888999998888776553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=0.00027  Score=69.15  Aligned_cols=243  Identities=16%  Similarity=0.158  Sum_probs=149.4

Q ss_pred             CCCHHHHHHHHHh----hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--------C-
Q 010830           78 IPTPDLVHEVLQL----SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--------V-  144 (499)
Q Consensus        78 ~~~~~~~~~~l~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~-  144 (499)
                      ..++.+-..+|..    .-|+.+.|.+-.+.++     +...|..|.+.|.+..+++-|.-.+..|....        . 
T Consensus       723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            3566666667662    3477787777776543     45688889999999888888877776665432        0 


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      .+..+=.-+.......|.+++|+.+|.+-++..          |++-+.+..|.+++|.++-+.-.+.  --..||....
T Consensus       798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA  865 (1416)
T KOG3617|consen  798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYA  865 (1416)
T ss_pred             CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHH
Confidence            111223334444567788888888888876532          3333333338888888876653321  1123555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHhHc-------cCCCC----------chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC
Q 010830          225 EGWEKEGNVEEANKTFGEMVER-------FEWNP----------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP  287 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~~~~~-------~~~~p----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  287 (499)
                      ..+-..+|++.|++.|++....       +.-.|          .|...|.-....+-..|+.+.|+.+|...++     
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----  940 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----  940 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence            5566677777777777653110       00001          1223344444555555666666666665433     


Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                          |-++++..|-.|+.++|-++-++   .|     |......|.+.|-..|++.+|..+|-+...
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~e---sg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEE---SG-----DKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHh---cc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                44556666677888888776553   33     666777788888888999998888877653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.61  E-value=1.3e-05  Score=70.72  Aligned_cols=63  Identities=16%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ....+..+...+...|++++|...|+++...  .|+.    .++..+...+... |++++|...++.+.+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~   98 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR   98 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence            3445555555566666666666666655443  2221    2333344444444 555555555555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=4.2e-05  Score=74.55  Aligned_cols=245  Identities=13%  Similarity=0.151  Sum_probs=164.4

Q ss_pred             CCCCCHHHHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------
Q 010830          108 GQRLSPYAWNLMV--DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-G-------  177 (499)
Q Consensus       108 ~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------  177 (499)
                      ...-|..+-..++  +.|..-|+.+.|.+-++.++     +...|..+...|.+..++|-|.-.+..|... |       
T Consensus       721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a  795 (1416)
T KOG3617|consen  721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA  795 (1416)
T ss_pred             ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence            3456777777777  45788899999998887776     4567999999999999999999888888542 2       


Q ss_pred             -CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHh
Q 010830          178 -VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA  256 (499)
Q Consensus       178 -~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  256 (499)
                       ..++.  -..-...++-..|.+++|+.+|.+-++        |..|=+.|...|.+++|.++-+.--   .+..  ..|
T Consensus       796 ~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~D---RiHL--r~T  860 (1416)
T KOG3617|consen  796 QQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKD---RIHL--RNT  860 (1416)
T ss_pred             HhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcc---ceeh--hhh
Confidence             12221  111122222222899999999998876        4556667888999999998876542   2222  236


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhC----------C---------CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          257 YETFLITLIRGKQVDEALKFLRVMKGE----------N---------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       257 ~~~li~~~~~~~~~~~a~~~~~~m~~~----------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      |..-..-+-..++.+.|++.|++....          .         -.-|...|.....-+-..|+.+.|+.+|.... 
T Consensus       861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-  939 (1416)
T KOG3617|consen  861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-  939 (1416)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-
Confidence            777777788889999999988753211          1         00122223333333334566666666555433 


Q ss_pred             cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          318 IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       318 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                                -|-++++..|-.|+.++|-++-++-.      |....-.+.+.|-..|++.+|..+|.+...
T Consensus       940 ----------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 ----------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             ----------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                      25566777777788888877665432      555566678888899999999998887643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=0.00047  Score=64.39  Aligned_cols=330  Identities=10%  Similarity=0.069  Sum_probs=213.8

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCCch
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAICRQENQT  199 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~  199 (499)
                      .+....|+++.|+.+|.+.....+++...|..-..+|+..|++++|++=-.+-++.  .|+ ..-|+..-.++.-. |++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l-g~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL-GDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc-ccH
Confidence            45678899999999999999999889999999999999999999999877766654  555 45677777777777 999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhHcc--CCCCchHHhHHHHHHHHhcC-------
Q 010830          200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA---NKTFGEMVERF--EWNPEHVLAYETFLITLIRG-------  267 (499)
Q Consensus       200 ~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a---~~~~~~~~~~~--~~~p~~~~~~~~li~~~~~~-------  267 (499)
                      ++|+.-|.+=.+..+.|...++.+..++.......+.   -.++..+....  .... ....|..++..+-+.       
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~-~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSL-SDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhh-ccHHHHHHHHHhhcCcHhhhcc
Confidence            9999999987776777788888888877211000000   01111111000  0000 001233333332222       


Q ss_pred             ---CCHHHHHHHHHH-----HhhCC-------CCCC----------------------HhhHHHHHHHHHHcCCHhHHHH
Q 010830          268 ---KQVDEALKFLRV-----MKGEN-------CFPT----------------------LKFFSNALDILVKLNDSTHAVQ  310 (499)
Q Consensus       268 ---~~~~~a~~~~~~-----m~~~~-------~~p~----------------------~~~~~~li~~~~~~~~~~~a~~  310 (499)
                         .++..+.-.+..     +...|       ..|.                      ..-...+.++..+..+++.|.+
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence               112222222111     00111       1110                      1123456677778888999999


Q ss_pred             HHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH-------HHHHHHhcCCHhHHHHH
Q 010830          311 LWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM-------IFECLIKNKRVHEVEKF  383 (499)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------ll~~~~~~g~~~~a~~~  383 (499)
                      -+......    ..+..-++..-.+|...|.+..+...-+...+.|-. ...-|+.       +..+|.+.++++.+...
T Consensus       246 ~y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  246 HYAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            99888874    345666677778888888887777766665554422 1122222       33466667888999999


Q ss_pred             HHHHHHCCCCCChhhHH-------------------------HHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          384 FHEMIKNEWQPTPLNCA-------------------------TAITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       384 ~~~~~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                      |++.......|+...-.                         .=...+.+.|++..|...|.++++.. +-|...|..-.
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA  399 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA  399 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence            98877654444432211                         11345667799999999999999876 56778888888


Q ss_pred             HHHHhCCChHHHHHHHHHHHHc
Q 010830          439 VGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       439 ~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      -+|.+.|.+..|++-.+...+.
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc
Confidence            8999999999998887777765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.56  E-value=0.00045  Score=60.82  Aligned_cols=299  Identities=15%  Similarity=0.108  Sum_probs=211.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH---HHHHccCCchHHHHHHHHHHhccCCCCHHH-HH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL---SAICRQENQTSRALEFLNRVKKIVDPDGDS-FA  221 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~  221 (499)
                      ++.---.+...+...|++.+|+.-|...++    .|+..|.++.   ..|... |+...|+.-+..+.+ .+||-.. -.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVle-lKpDF~~ARi  110 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLE-LKPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHh-cCccHHHHHH
Confidence            344455677788889999999999988874    4455555544   356666 777777777776654 3455332 22


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH---Hh------------HHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LA------------YETFLITLIRGKQVDEALKFLRVMKGENCF  286 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  286 (499)
                      --...+.+.|.++.|..-|+.+.+.   .|.+.   ..            ....+..+...|+...|+.+...+.+.. +
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~  186 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P  186 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence            2345677899999999999999765   44211   11            1233456667789999999998888765 3


Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHh---
Q 010830          287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLT---  363 (499)
Q Consensus       287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---  363 (499)
                      -|...|..-..+|...|++..|+.=++...+..   ..+..++--+-..+...|+.+.++...++-.+  +.||...   
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~  261 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP  261 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence            467777778899999999999998888777764   44677777788888899999999998888877  4566532   


Q ss_pred             -HHHH---------HHHHHhcCCHhHHHHHHHHHHHCCCCCChhh---HHHHHHHHhccCChhHHHHHHHHHHHCCCCCh
Q 010830          364 -YNMI---------FECLIKNKRVHEVEKFFHEMIKNEWQPTPLN---CATAITMLLDADEPEIAIEIWNYILENGILPL  430 (499)
Q Consensus       364 -~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  430 (499)
                       |..+         +......+++.++.+-.+...+.........   +..+-.++...|++.+|++...+..+  +.||
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~  339 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCch
Confidence             2211         1123456777788877777777643322333   34455666777899999999998887  4444


Q ss_pred             -HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          431 -EASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       431 -~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                       +.++.--..+|.-...++.|+.-|+...+.+
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence             7778777888988899999999999888654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.56  E-value=1.8e-05  Score=66.97  Aligned_cols=158  Identities=13%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830          151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE  230 (499)
Q Consensus       151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~  230 (499)
                      ..+-..+...|+-+....+....... ..-|....+.+.....+. |++..|...+.+....-++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHh-cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence            44445555556656555555543321 133444445556666666 6666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHH
Q 010830          231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ  310 (499)
Q Consensus       231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  310 (499)
                      |++++|..-|.+..+   +.|.+...+|.+.-.+.-.|+.+.|..++......+. -|..+-..+.......|+++.|++
T Consensus       148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence            666666666666643   3444455666666666666666666666666555442 244445555556666666666666


Q ss_pred             HHHH
Q 010830          311 LWDI  314 (499)
Q Consensus       311 ~~~~  314 (499)
                      +...
T Consensus       224 i~~~  227 (257)
T COG5010         224 IAVQ  227 (257)
T ss_pred             hccc
Confidence            5443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=0.00011  Score=62.34  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=75.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH----
Q 010830          262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC----  337 (499)
Q Consensus       262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~----  337 (499)
                      ..|++.+++++|++....    +  -+......=+..+.+..+.+.|++.++.|.+..     +..+.+.|..++.    
T Consensus       116 ~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLAT  184 (299)
T ss_pred             HHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhc
Confidence            345555555555555443    1  011122222233444555555555555555533     3344444443332    


Q ss_pred             cCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChh-HHH
Q 010830          338 NNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE-IAI  416 (499)
Q Consensus       338 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~a~  416 (499)
                      ..+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++.+.+... ++.+...++-+-...|... ...
T Consensus       185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence            234566666677766654 4566666666666666677777777777766665422 3444444444333444433 333


Q ss_pred             HHHHHHHH
Q 010830          417 EIWNYILE  424 (499)
Q Consensus       417 ~~~~~m~~  424 (499)
                      +.+..+..
T Consensus       263 r~l~QLk~  270 (299)
T KOG3081|consen  263 RNLSQLKL  270 (299)
T ss_pred             HHHHHHHh
Confidence            44444443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=0.00026  Score=70.82  Aligned_cols=357  Identities=13%  Similarity=0.139  Sum_probs=195.0

Q ss_pred             hHHHHHHhcCCCCCH-HHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830           67 DIESALACTGIIPTP-DLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG  143 (499)
Q Consensus        67 ~l~~~l~~~~~~~~~-~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  143 (499)
                      ++...+..++..|.. .++-.-..  ...|++.+|-.+-....+|.-.++.|-+.+=..=...|+..-.+..|..+...|
T Consensus       345 eLal~~A~R~nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG  424 (1666)
T KOG0985|consen  345 ELALRLAVRANLAGAENLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG  424 (1666)
T ss_pred             HHHHHhhhhcCCccHHHHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc
Confidence            344444444444442 22333232  346777777777776666666777777777777777777777788888888777


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830          144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL  223 (499)
Q Consensus       144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  223 (499)
                      ..|..---.+++.-...|+.+-..+++.+=+        -+++-=+.-+.+. -+...|+.+|.+..        +-+.+
T Consensus       425 kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdK--------LeCSEELGDlVK~-~d~~lAL~iYlrAn--------vp~KV  487 (1666)
T KOG0985|consen  425 KLNKYETLELCRPVLQQGRKQLLEKWLKEDK--------LECSEELGDLVKP-YDTTLALSIYLRAN--------VPAKV  487 (1666)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhhhhh--------hhhhHHhcCcccc-CCchHHHHHHHHcC--------CcHHH
Confidence            6665544445555556666655555553311        1111111111111 22223333333221        12334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN  303 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  303 (499)
                      +.+|+.+|+++++.-...+.    |..|+    |-.+++...+ -..+.+.++...|.+..  +...-++.+.+.+...+
T Consensus       488 i~cfAE~Gqf~KiilY~kKv----GyTPd----ymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N  556 (1666)
T KOG0985|consen  488 IQCFAETGQFKKIILYAKKV----GYTPD----YMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELN  556 (1666)
T ss_pred             HHHHHHhcchhHHHHHHHHc----CCCcc----HHHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHH
Confidence            55566666666555444332    55662    3444555444 45555555555554422  11122222222222222


Q ss_pred             CHhHHHHHH------------------------------HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          304 DSTHAVQLW------------------------------DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       304 ~~~~a~~~~------------------------------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ....+..++                              +.+...+  . -...-+..+.+.|.+.|-...|++.+.++.
T Consensus       557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~--m-FtHyDra~IAqLCEKAGL~qraLehytDl~  633 (1666)
T KOG0985|consen  557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGND--M-FTHYDRAEIAQLCEKAGLLQRALEHYTDLY  633 (1666)
T ss_pred             hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhcc--c-cccccHHHHHHHHHhcchHHHHHHhcccHH
Confidence            222222222                              2222221  1 012226677788889999999998887765


Q ss_pred             HCCCCCCHHhHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH-----
Q 010830          354 FHGAFPDSLTYN----MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-----  424 (499)
Q Consensus       354 ~~g~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----  424 (499)
                      +  ++-..+.-+    --+..|...-.++.+.+.++.|...+++-|..+...+..-|...=..+...++|+....     
T Consensus       634 D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~  711 (1666)
T KOG0985|consen  634 D--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLY  711 (1666)
T ss_pred             H--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHH
Confidence            4  111111100    11223444556788999999999988888888777777667666556666666665543     


Q ss_pred             ------CCCCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830          425 ------NGILPLEASANELLVGLRNLGRLSDVRRFAEE  456 (499)
Q Consensus       425 ------~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  456 (499)
                            -++.-|+.+.--.|.+.|+.|++.+..++.++
T Consensus       712 yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre  749 (1666)
T KOG0985|consen  712 YFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE  749 (1666)
T ss_pred             HHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence                  13555666667789999999999988877654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=9.2e-05  Score=62.77  Aligned_cols=244  Identities=14%  Similarity=0.086  Sum_probs=130.1

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHH-H
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-K  275 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~-~  275 (499)
                      |.+..++..-...... +.+...-.-+.++|...|.+....   .++..  +-.| .......+......-++.++.+ +
T Consensus        22 Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~-~lqAvr~~a~~~~~e~~~~~~~~~   94 (299)
T KOG3081|consen   22 GNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKAT-PLQAVRLLAEYLELESNKKSILAS   94 (299)
T ss_pred             hHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccc---ccccc--ccCC-hHHHHHHHHHHhhCcchhHHHHHH
Confidence            6666666555444331 133444444556666666554332   22222  2222 2333333333333334433333 3


Q ss_pred             HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 010830          276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH  355 (499)
Q Consensus       276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  355 (499)
                      +.+.+.......+......-...|++.|++++|.+......        +......=+..+.+..+++-|.+.+++|.+-
T Consensus        95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33444444444443444444556777777777777766521        2333333344555666777777777777763


Q ss_pred             CCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH
Q 010830          356 GAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE  431 (499)
Q Consensus       356 g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  431 (499)
                         -+..|.+.|..++.+    .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.....-. ++
T Consensus       167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp  241 (299)
T KOG3081|consen  167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP  241 (299)
T ss_pred             ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence               245566666666654    34567777777777653 4577777777777777777888888877777764433 23


Q ss_pred             HHHHHHHHHHHhCCC-hHHHHHHHHHHHHc
Q 010830          432 ASANELLVGLRNLGR-LSDVRRFAEEMLNR  460 (499)
Q Consensus       432 ~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~  460 (499)
                      .+..-++.+-...|. .+-..+.+.+++..
T Consensus       242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  242 ETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            333333333333343 33444555555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.55  E-value=7.8e-05  Score=75.91  Aligned_cols=172  Identities=6%  Similarity=0.057  Sum_probs=124.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL  188 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  188 (499)
                      .+.+...|..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++.+++..+  .+.              
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l--------------   90 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI--------------   90 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence            3456789999999999999999999999988877765555565555578888887777666  332              


Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK  268 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~  268 (499)
                       ...... .++..+..+...+.. ..-+...+..+..+|-+.|+.++|..+++++.+   +.|+|+.+.|.+...|... 
T Consensus        91 -~~~~~~-~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         91 -DSFSQN-LKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             -hhcccc-cchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-
Confidence             222222 334333333333333 234445778888999999999999999999965   3588999999999999999 


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +.++|++++.+....               +...+++..+.++|..+...
T Consensus       164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence            999999988876553               45556677777777777664

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.53  E-value=9.1e-06  Score=78.11  Aligned_cols=219  Identities=11%  Similarity=0.072  Sum_probs=174.8

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      |--..--.+...+.+.|-...|..+|++..        .|.-+|.+|...|+.++|..+.....+.  +||...|..+.+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            333444567788888999999999998765        4888999999999999999999888774  889999999988


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      ..... .-+++|.++++....+      .-..+.......++++++.+.|+.-.+   ++|-...+|..+..+..+.+++
T Consensus       466 v~~d~-s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  466 VLHDP-SLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hccCh-HHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhh
Confidence            87777 8889999998875432      112222233457899999999988744   4555667899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830          271 DEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF  349 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  349 (499)
                      +.|.+.|..-....  || ...|+.+-.+|.+.++..+|...+++..+.+   .-+...|...+....+.|.+++|++.+
T Consensus       536 q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---~~~w~iWENymlvsvdvge~eda~~A~  610 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---YQHWQIWENYMLVSVDVGEFEDAIKAY  610 (777)
T ss_pred             HHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---CCCCeeeechhhhhhhcccHHHHHHHH
Confidence            99999998766543  44 5689999999999999999999999999876   346677888888889999999999999


Q ss_pred             HHHHH
Q 010830          350 DQMVF  354 (499)
Q Consensus       350 ~~m~~  354 (499)
                      .++..
T Consensus       611 ~rll~  615 (777)
T KOG1128|consen  611 HRLLD  615 (777)
T ss_pred             HHHHH
Confidence            88875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.53  E-value=0.00012  Score=67.51  Aligned_cols=218  Identities=10%  Similarity=0.044  Sum_probs=149.5

Q ss_pred             CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830          232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL  311 (499)
Q Consensus       232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  311 (499)
                      ++.++...-+.+....+....+...+...+.+......-..+-.++.+..+.+  -...-|...+ .+...|+.+.|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHHH
Confidence            45555555556554334444455566666665555544444444443333311  1223343333 45577999999999


Q ss_pred             HHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830          312 WDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKN  390 (499)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  390 (499)
                      ++.+++.-   +-|...+......+.+.++.++|.+.++++...  .|+ ....-.+..++.+.|++.+|+.++++....
T Consensus       329 l~~L~~~~---P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~  403 (484)
T COG4783         329 LQPLIAAQ---PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN  403 (484)
T ss_pred             HHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence            99988863   567777788889999999999999999999884  566 456667778999999999999999998775


Q ss_pred             CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CccCHHH
Q 010830          391 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILIYEVT  468 (499)
Q Consensus       391 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~  468 (499)
                      . +-|+..|..|.++|...|+..++.....+                  +|...|++++|...+....+..  -.|+..-
T Consensus       404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR  464 (484)
T COG4783         404 D-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWAR  464 (484)
T ss_pred             C-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4 55788999999999999998887765443                  4566799999999888887652  2334444


Q ss_pred             HHHHHHHH
Q 010830          469 MHKLKKAF  476 (499)
Q Consensus       469 ~~~ll~~~  476 (499)
                      +...|...
T Consensus       465 ~dari~~~  472 (484)
T COG4783         465 ADARIDQL  472 (484)
T ss_pred             HHHHHHHH
Confidence            44444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=6.5e-05  Score=76.43  Aligned_cols=167  Identities=11%  Similarity=0.137  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830          182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL  261 (499)
Q Consensus       182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li  261 (499)
                      ...+..|+..+... +++++|.++.+...+..+.....|-.+...+.+.++.+++..+  .                 ++
T Consensus        31 ~~a~~~Li~~~~~~-~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~-----------------~l   90 (906)
T PRK14720         31 FKELDDLIDAYKSE-NLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N-----------------LI   90 (906)
T ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h-----------------hh
Confidence            44455556655555 6666666666644443333333444433345555554433333  1                 22


Q ss_pred             HHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830          262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD  341 (499)
Q Consensus       262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  341 (499)
                      .......++..+.-+...|.+.+  -+...+..+..+|-+.|+.+++..+|+++++..   +-|..+.|.+...|... +
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-h
Confidence            22222233333333333444332  233456667777777788888888888777765   45677777777777777 7


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      +++|.+++.+....               +...+++..+.++|.++..
T Consensus       165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence            77777777766652               3444455555555555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=4.6e-05  Score=73.47  Aligned_cols=233  Identities=13%  Similarity=0.099  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (499)
                      .-..+...+...|-...|..+|+++.         .|.-++.+|+.. |+..+|..+..+..+ -+||...|..+.+...
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~l-g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLL-GQHGKAEEINRQELE-KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHh-cccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence            34467788899999999999999875         466678888888 889999888777655 5789999999999988


Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA  308 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a  308 (499)
                      ...-+++|.++++....+         +-..+.......++++++.+.|+.-.+.. ..-..+|-..-.+..+.+++..|
T Consensus       469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence            888899999999887443         22223333445799999999998765543 23456777788888899999999


Q ss_pred             HHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      .+.|.......   +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|..-+-...+.|.+++|.+.+.++.
T Consensus       539 v~aF~rcvtL~---Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  539 VKAFHRCVTLE---PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             HHHHHHHhhcC---CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            99999988753   3467899999999999999999999999999876 3455667777777889999999999999887


Q ss_pred             HCC-CCCChhhHHHHHHHH
Q 010830          389 KNE-WQPTPLNCATAITML  406 (499)
Q Consensus       389 ~~~-~~p~~~~~~~li~~~  406 (499)
                      +.. ..-|......++...
T Consensus       615 ~~~~~~~d~~vl~~iv~~~  633 (777)
T KOG1128|consen  615 DLRKKYKDDEVLLIIVRTV  633 (777)
T ss_pred             HhhhhcccchhhHHHHHHH
Confidence            641 112444444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.50  E-value=0.00011  Score=73.28  Aligned_cols=186  Identities=12%  Similarity=-0.000  Sum_probs=137.8

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      .+...|+..|-...+....=...|..|...|+...+...|.+.|+...+.+.-+...+....+.|++..+++.|..+.-.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            45666666666555555555678999999999999999999999999999888888999999999999999999998433


Q ss_pred             HHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       173 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .-+.. ...-...|...--.+.+. ++...+...|+...+..+.|...|..+..+|.++|.+..|.++|.+..   -+.|
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP  627 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRP  627 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCc
Confidence            22211 001112222222234455 888899999998888778899999999999999999999999999884   4577


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .+...-.-..-.-+..|.+.+|+..+.....
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5543333344455667888888888876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=3.2e-05  Score=65.50  Aligned_cols=118  Identities=12%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH-hcCCC--HHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL-IRGKQ--VDEA  273 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~-~~~~~--~~~a  273 (499)
                      ++.+++...++...+..+.|...|..+...|...|++++|...|++..+   +.|++...+..+..++ ...|+  .++|
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4445555555554444455566666666666666666666666665533   3555555555555542 44444  3566


Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       274 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      .+++++..+.+- -+...+..+...+.+.|++++|+..|+.+.+.
T Consensus       130 ~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            666655555441 13444445555555555555555555555554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.47  E-value=8.3e-05  Score=74.86  Aligned_cols=238  Identities=8%  Similarity=0.032  Sum_probs=154.2

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMW-NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      .++...+.+=.+.+.-|..++|- ++..+..           .++....+.....+++.-.....+. ...+...+-.|.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La   93 (694)
T PRK15179         26 SGPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA   93 (694)
T ss_pred             CCcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence            34444444445555556665552 3333322           2333333333333333333333322 234466677777


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      ....+. |.+++|+.+++....-.+.+......+...+.+.+++++|...+++...   ..|++......+..++.+.|+
T Consensus        94 ~i~~~~-g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         94 RALEAA-HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHc-CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcc
Confidence            777777 8888998888888776677778888888888888899998888888854   478888888888888888899


Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF  349 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  349 (499)
                      +++|..+|++....+ .-+..++..+-.++-+.|+.++|...|+...+..   .+...-|+.++.      +...-..++
T Consensus       170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~---~~~~~~~~~~~~------~~~~~~~~~  239 (694)
T PRK15179        170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI---GDGARKLTRRLV------DLNADLAAL  239 (694)
T ss_pred             hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---CcchHHHHHHHH------HHHHHHHHH
Confidence            999999998888743 2346788888888888889999988888888763   455566655543      233344555


Q ss_pred             HHHHHC----CCCCCHHhHHHHHHHHHhc
Q 010830          350 DQMVFH----GAFPDSLTYNMIFECLIKN  374 (499)
Q Consensus       350 ~~m~~~----g~~p~~~~~~~ll~~~~~~  374 (499)
                      +++.-.    |....+.....+|..|.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        240 RRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            555433    2333344555666655543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.44  E-value=1.2e-05  Score=68.05  Aligned_cols=118  Identities=11%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCCc--hHHH
Q 010830          126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-CRQENQ--TSRA  202 (499)
Q Consensus       126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~--~~~a  202 (499)
                      .++.+++...++...+.++.+...|..+...|...|++++|...|+...+.. +-+...+..+-.++ ... |+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~-g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQA-GQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc-CCCCcHHH
Confidence            4455555555666666555566666666666666666666666666655542 22344444444432 333 43  3666


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      ..++++..+..+.+...+..+...+.+.|++++|...|+++.+
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666555555566666666666666666666666666644

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.43  E-value=0.0012  Score=64.06  Aligned_cols=108  Identities=15%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             HHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhH
Q 010830          335 LLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI  414 (499)
Q Consensus       335 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  414 (499)
                      +-....++.+|+.+++.+...+  .-..-|..+...|...|+++.|+++|.+.   +      .++-.|..|.+.|+|+.
T Consensus       741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHH
Confidence            3344556666666666665532  12334556666677777777777666543   1      23445666677777777


Q ss_pred             HHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 010830          415 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE  455 (499)
Q Consensus       415 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  455 (499)
                      |.++-.+..  |.......|-+-..-+-++|++.+|.+++-
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence            666655432  223333444444444566677777666653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.38  E-value=0.00035  Score=67.61  Aligned_cols=43  Identities=21%  Similarity=0.152  Sum_probs=19.2

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHH
Q 010830          367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI  418 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  418 (499)
                      +..-+-..|++..|+.-|-+..         -|.+-++.|-..+.|++|.++
T Consensus       888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence            3344444555555554443321         123334444445555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=0.00016  Score=66.75  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=64.2

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |+.+.|+..++.+....+.|...+....+.+.+.++.++|.+.++.+...   .|+....+-.+..+|.+.|++++|+.+
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~  396 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRI  396 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHH
Confidence            55555666655555555555555555555566666666666666555332   443444455555556666666666655


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      ++...... +-|...|..|..+|...|+..++..-..+...
T Consensus       397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            55554432 33455555555666555555555555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.37  E-value=8.6e-05  Score=74.76  Aligned_cols=185  Identities=10%  Similarity=0.017  Sum_probs=140.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHH
Q 010830          106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV  185 (499)
Q Consensus       106 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  185 (499)
                      .+.+..++..+-.|..+..+.|.+++|..+++...+..+.+...+..+...+.+.+++++|+..++.....  .|+..+.
T Consensus        79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~  156 (694)
T PRK15179         79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE  156 (694)
T ss_pred             HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH
Confidence            34678889999999999999999999999999999999989999999999999999999999999999877  6766665


Q ss_pred             HHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830          186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI  265 (499)
Q Consensus       186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~  265 (499)
                      ..+...+....|++++|..+|+++....+.+..++..+...+.+.|+.++|...|+...+.  ..+ ....|+..+    
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~-~~~~~~~~~----  229 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD-GARKLTRRL----  229 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc-chHHHHHHH----
Confidence            5555544444499999999999998755666889999999999999999999999998764  222 334444433    


Q ss_pred             cCCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHH
Q 010830          266 RGKQVDEALKFLRVMKGENCF----PTLKFFSNALDILVK  301 (499)
Q Consensus       266 ~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~  301 (499)
                        ++...-..+++++.-++..    ........+|..|.+
T Consensus       230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (694)
T PRK15179        230 --VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR  267 (694)
T ss_pred             --HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence              2334445566665544322    223334444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.36  E-value=4.7e-05  Score=60.93  Aligned_cols=47  Identities=11%  Similarity=0.072  Sum_probs=18.0

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      |++++|...|+......+.+...+..+..++.+.|+.++|...|+..
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333333333322333333333333444444444444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.30  E-value=3.3e-05  Score=61.80  Aligned_cols=91  Identities=10%  Similarity=-0.007  Sum_probs=43.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      +...+...|++++|...|+.....++.+...|..+...+...|++++|...|+...+.. +.+...+..+-.++... |+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~-g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM-GE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CC
Confidence            34444445555555555555554444444555555555555555555555555544432 22334444444444444 55


Q ss_pred             hHHHHHHHHHHhc
Q 010830          199 TSRALEFLNRVKK  211 (499)
Q Consensus       199 ~~~a~~~~~~~~~  211 (499)
                      .++|...|+...+
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.26  E-value=5.7e-05  Score=59.97  Aligned_cols=92  Identities=15%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      ...+...+...|++++|.+.|+.+...+ +.+...+..+...+... |++++|..+++...+..+.+...+..+...|..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQML-KEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            3333444444444444444444443322 22233333333333333 444444444444333333333444444444444


Q ss_pred             cCCHHHHHHHHHHH
Q 010830          230 EGNVEEANKTFGEM  243 (499)
Q Consensus       230 ~g~~~~a~~~~~~~  243 (499)
                      .|++++|.+.|+..
T Consensus        98 ~g~~~~A~~~~~~a  111 (135)
T TIGR02552        98 LGEPESALKALDLA  111 (135)
T ss_pred             cCCHHHHHHHHHHH
Confidence            44444444444444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.0011  Score=55.99  Aligned_cols=83  Identities=10%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHH
Q 010830          268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFR  347 (499)
Q Consensus       268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  347 (499)
                      |++++|+++++.+.+.+ +.|..++.-=+-..-..|+.-+|++-+....+.   +.-|...|.-+...|...|++++|.-
T Consensus       100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            44444444444444333 223333333333333334444444444444333   34455555555555555555555555


Q ss_pred             HHHHHHH
Q 010830          348 FFDQMVF  354 (499)
Q Consensus       348 ~~~~m~~  354 (499)
                      .++++.-
T Consensus       176 ClEE~ll  182 (289)
T KOG3060|consen  176 CLEELLL  182 (289)
T ss_pred             HHHHHHH
Confidence            5555554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.21  E-value=2.2e-06  Score=49.66  Aligned_cols=33  Identities=33%  Similarity=0.673  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD  360 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  360 (499)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            345555555555555555555555555555544

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.21  E-value=2.2e-06  Score=49.68  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIY  465 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  465 (499)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            678888888888888888888888888888776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.21  E-value=5.8e-05  Score=70.22  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ...-..|+..+...++++.|.++|+++.+.  .|+.  ...+...+... ++..+|.+++++..+..+.+..........
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345556777778888999999999999866  3553  44466777666 778888888888777666778888888888


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      +.+.++.+.|+++.++..+   ..|++..+|..|..+|.+.|+++.|+-.++.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999954   488888899999999999999999998888764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.18  E-value=0.0067  Score=61.24  Aligned_cols=176  Identities=13%  Similarity=0.023  Sum_probs=103.5

Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 010830           68 IESALACTGIIPTPDLVHEVLQLSYD---SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV  144 (499)
Q Consensus        68 l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  144 (499)
                      +++.++...+.++-...-..|...+.   +...|.+.|+.+-+....+...+....+.|++..+++.|..+.-..-+..+
T Consensus       478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~  557 (1238)
T KOG1127|consen  478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP  557 (1238)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch
Confidence            44444444444443333333332222   556788888888778888899999999999999999999888433333322


Q ss_pred             CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHH
Q 010830          145 LSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI  222 (499)
Q Consensus       145 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  222 (499)
                      .-.  ..|..+.-.|.+.++...|...|+...+.. +-|...|..+..+|.+. |.+..|.++|.+...-.+.+...-.-
T Consensus       558 a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s-Gry~~AlKvF~kAs~LrP~s~y~~fk  635 (1238)
T KOG1127|consen  558 AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES-GRYSHALKVFTKASLLRPLSKYGRFK  635 (1238)
T ss_pred             HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc-CceehHHHhhhhhHhcCcHhHHHHHH
Confidence            111  123334445666667777777777666543 34566667777777777 77777777776654422222222222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhH
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      ..-.-+..|.+.+|...+..+..
T Consensus       636 ~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  636 EAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            23334455666666666555533

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.17  E-value=0.00011  Score=58.44  Aligned_cols=103  Identities=10%  Similarity=0.075  Sum_probs=69.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH
Q 010830          107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN  186 (499)
Q Consensus       107 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  186 (499)
                      ...+.+......+...+.+.|++++|.+.|+.+...++.+...|..+...+...|++++|..+++...+.+ +.+...+.
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~   89 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF   89 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence            33444455566666777777777777777777777666667777777777777777777777777766553 33455555


Q ss_pred             HHHHHHHccCCchHHHHHHHHHHhc
Q 010830          187 SLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       187 ~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      .+-..+... |+++.|...|+...+
T Consensus        90 ~la~~~~~~-g~~~~A~~~~~~al~  113 (135)
T TIGR02552        90 HAAECLLAL-GEPESALKALDLAIE  113 (135)
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            555566666 777777777776655

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.17  E-value=3.3e-05  Score=72.10  Aligned_cols=123  Identities=17%  Similarity=0.157  Sum_probs=85.3

Q ss_pred             CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHH
Q 010830          357 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA  434 (499)
Q Consensus       357 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  434 (499)
                      ...+......+++.+....+++++..++.+....  ....-..|..++++.|.+.|..+.+.++++.=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445566666666666666777777777776654  22222345567777777777777777777777777777777777


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830          435 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE  479 (499)
Q Consensus       435 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  479 (499)
                      |.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777777777766666667777666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.17  E-value=3.1e-06  Score=48.63  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ  180 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  180 (499)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467788888888888888888888887777766

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0018  Score=54.79  Aligned_cols=129  Identities=14%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (499)
                      .|..++-+....|+.+.|..+++.+...  .|...-...+=..+....|.+++|.++++.+.+..+.|..++.--+...-
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            3444444555556666666666665443  23333222222233333355666666666655555555555555444444


Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ..|+--+|++-+....+.   -+.|...|.-+...|...|++++|.-.++++.-
T Consensus       132 a~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            555555555555555433   333555666666666666666666666655554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.14  E-value=4.5e-06  Score=47.92  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCcc
Q 010830          432 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILI  464 (499)
Q Consensus       432 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p  464 (499)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.10  E-value=0.014  Score=58.31  Aligned_cols=214  Identities=9%  Similarity=0.045  Sum_probs=146.4

Q ss_pred             hHHHHHHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 010830           67 DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS  146 (499)
Q Consensus        67 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  146 (499)
                      .+...++++|..+....+.++.....|+.++|..+++........|..+...+-..|...++.++|..+|++.....+. 
T Consensus        31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-  109 (932)
T KOG2053|consen   31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-  109 (932)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence            3556677888888888888888888999999998888776655569999999999999999999999999999988654 


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch---------HHHHHHHHHHhc--cCCC
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT---------SRALEFLNRVKK--IVDP  215 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---------~~a~~~~~~~~~--~~~~  215 (499)
                      ..-...+..+|++.+.+.+-.+.=-+|-+. ++-+.+.+=++++.+.......         .-|.+.++.+.+  |-.-
T Consensus       110 eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~  188 (932)
T KOG2053|consen  110 EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE  188 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence            778888889999998877655554444332 2334555555555554331222         234444554433  2111


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHH-HHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFG-EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      +..-...........|++++|.+++. ...+.  ..+.+...-+.-+..+...++|.+..++-.++...|
T Consensus       189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  189 SEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            22222333445567888999999984 33332  233344445566777788888888888888888776

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=5.6e-05  Score=55.12  Aligned_cols=79  Identities=15%  Similarity=0.280  Sum_probs=54.5

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHCCC-CChHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCccCHHHHHH
Q 010830          401 TAITMLLDADEPEIAIEIWNYILENGI-LPLEASANELLVGLRNLG--------RLSDVRRFAEEMLNRRILIYEVTMHK  471 (499)
Q Consensus       401 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~  471 (499)
                      ..|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-+.+.+++.|+..+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345555555777777777777777777 677777777776665542        23356677778888788888888888


Q ss_pred             HHHHHHhc
Q 010830          472 LKKAFYNE  479 (499)
Q Consensus       472 ll~~~~~~  479 (499)
                      ++.++.+.
T Consensus       110 vl~~Llkg  117 (120)
T PF08579_consen  110 VLGSLLKG  117 (120)
T ss_pred             HHHHHHHh
Confidence            88777653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.07  E-value=7.6e-05  Score=69.73  Aligned_cols=134  Identities=13%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             HHHHHhHccCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830          239 TFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIM  315 (499)
Q Consensus       239 ~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  315 (499)
                      ++..|.++++- .|-+......+++.+....+.+.+..++.+.+..  ....-..|..++|+.|.+.|..+.+..+++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            45555443222 2435567777888888888888888888777654  22233455668888888888888888888888


Q ss_pred             HhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830          316 VGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN  374 (499)
Q Consensus       316 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  374 (499)
                      ...|  +-||..++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       130 ~~yG--iF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYG--IFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcc--cCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888  88888888888888888888888888888887776666777777777666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.06  E-value=0.00019  Score=66.82  Aligned_cols=124  Identities=14%  Similarity=0.128  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL  299 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  299 (499)
                      ...++..+...++++.|.++|+++.+.   .|   .....++..+...++-.+|.+++++..... +-+......-...|
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRER---DP---EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhc---CC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            344566666677888888888888765   34   244557777777777778888777776543 23455555556667


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      .+.++.+.|.++.+++.+..   +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       245 l~k~~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777788887777777753   3345577778888888888888877777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.05  E-value=0.00049  Score=55.26  Aligned_cols=125  Identities=17%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLL  189 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll  189 (499)
                      .|..++..+ ..++...+...++.+......+.   ...-.+...+...|++++|...|+........++.  ...-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444444 36666666666666666654442   23333445666667777777777666655311211  1222233


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE  242 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  242 (499)
                      ..+... |++++|+..++.... .......+....+.|.+.|+.++|...|+.
T Consensus        93 ~~~~~~-~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQ-GQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHc-CCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            444444 555555555544322 112233444455555555555555555543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.98  E-value=0.00054  Score=55.02  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHHcCCHhH
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--KFFSNALDILVKLNDSTH  307 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~  307 (499)
                      .++...+...++.+.+.++-.+-.....-.+...+...|++++|...|+........++.  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            445555555555554431111111222223334444555555555555555443311111  112223344444455555


Q ss_pred             HHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830          308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD  350 (499)
Q Consensus       308 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  350 (499)
                      |...++......    .....+......|.+.|+.++|...|+
T Consensus       104 Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  104 ALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555443322211    123334444444555555555555444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.98  E-value=0.00011  Score=53.55  Aligned_cols=75  Identities=16%  Similarity=0.390  Sum_probs=39.6

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcC--------CHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 010830          333 IGLLCNNDDVDNVFRFFDQMVFHGA-FPDSLTYNMIFECLIKNK--------RVHEVEKFFHEMIKNEWQPTPLNCATAI  403 (499)
Q Consensus       333 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~li  403 (499)
                      |..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-+.+.+|++|+..+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3344444555555556666665555 555566665555554432        1223445555555555555555555555


Q ss_pred             HHHh
Q 010830          404 TMLL  407 (499)
Q Consensus       404 ~~~~  407 (499)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            5443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.96  E-value=0.014  Score=53.30  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL  407 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  407 (499)
                      +.+..|.-+...|+...|.++-.+..    .|+..-|...+.+++..++|++-.++...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            44555666777788877777765553    37888899999999999999887765432      224577888999999


Q ss_pred             ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830          408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE  479 (499)
Q Consensus       408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  479 (499)
                      +.|+..+|..+...+          .+..-+..|.++|++.+|.+...+..      |...+..+.+.+-..
T Consensus       249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~  304 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGN  304 (319)
T ss_pred             HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCC
Confidence            999988888887762          12455777888999998877654443      455555555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.94  E-value=0.011  Score=52.00  Aligned_cols=184  Identities=9%  Similarity=0.070  Sum_probs=102.6

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF---ASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNS  187 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~  187 (499)
                      +...+-.....+...|++++|.+.|+.+....+-+...-   -.++.++.+.+++++|...+++..+.- -.|+. .+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHH
Confidence            444444455666778999999999999988776554433   456778889999999999999887662 12222 3333


Q ss_pred             HHHHHHcc----------------CCchH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830          188 LLSAICRQ----------------ENQTS---RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE  248 (499)
Q Consensus       188 ll~~~~~~----------------~~~~~---~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  248 (499)
                      .+.+.+..                ..|..   .|+..|+              .+++-|=...-..+|.+.+..+..+  
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~--------------~li~~yP~S~ya~~A~~rl~~l~~~--  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS--------------KLVRGYPNSQYTTDATKRLVFLKDR--  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH--------------HHHHHCcCChhHHHHHHHHHHHHHH--
Confidence            33333311                00111   1222222              2333333333344454444444332  


Q ss_pred             CCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830          249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMV  316 (499)
Q Consensus       249 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  316 (499)
                          -...--.+...|.+.|.+..|..-++.+.+.  +..........++.+|.+.|..++|.++...+.
T Consensus       174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence                1112224455567777777777777766653  223334455566666767777766666555443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.90  E-value=1.4e-05  Score=44.63  Aligned_cols=29  Identities=24%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      +|+.++++|++.|++++|.+++++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666677777777777777777666655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.88  E-value=1.9e-05  Score=44.12  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHG  356 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g  356 (499)
                      +|+++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34455555555555555555555554443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.86  E-value=0.00079  Score=51.88  Aligned_cols=100  Identities=11%  Similarity=-0.036  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC--CCCHhhHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNAL  296 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li  296 (499)
                      ++..+...+.+.|++++|.+.|+.+.+...-.+.....+..+..++.+.|++++|.+.|+.+....-  ......+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555566666666666666666543111111123455566666666666666666666554321  11123444555


Q ss_pred             HHHHHcCCHhHHHHHHHHHHhc
Q 010830          297 DILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       297 ~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      .++.+.|+.+.|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5556666666666666666654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.84  E-value=0.00067  Score=52.31  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=25.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830          117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMS  174 (499)
Q Consensus       117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~  174 (499)
                      ..+...+.+.|++++|.+.|+.+.+..+.+   ...+..+...+.+.|+++.|.+.|+.+.
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            334444444455555555554444433211   2233344444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.81  E-value=0.024  Score=51.29  Aligned_cols=321  Identities=10%  Similarity=0.027  Sum_probs=203.7

Q ss_pred             HHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhc
Q 010830           85 HEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK--NGRFEQMWNAVRVMKEDGVLSLPTFASIFDS--YCGA  160 (499)
Q Consensus        85 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~  160 (499)
                      ..+++.....+..+.+.|...++     ...|.+|-.++..  .|+-..|.++-.+-.+.-..|......|+.+  -.-.
T Consensus        59 wwlv~~iw~sP~t~~Ryfr~rKR-----drgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e  133 (531)
T COG3898          59 WWLVRSIWESPYTARRYFRERKR-----DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE  133 (531)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHh-----hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc
Confidence            33444556788888999986644     2356666665554  4788888877665543333344445555543  4457


Q ss_pred             CChhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830          161 GKYDEAVMSFDVMSMHGVEQDVVA--VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK  238 (499)
Q Consensus       161 g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  238 (499)
                      |++++|.+-|+.|..   .|....  ...|.-..-+. |+.+.|..+-+..-..-+--...+...+...+..|+++.|++
T Consensus       134 G~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~-GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         134 GDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRL-GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             CchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhc-ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence            999999999999975   233222  12222233345 899999998888766555567888899999999999999999


Q ss_pred             HHHHHhHccCCCCchHHh-HHHHHHHH---hcCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHHcCCHhHHHHHHH
Q 010830          239 TFGEMVERFEWNPEHVLA-YETFLITL---IRGKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDSTHAVQLWD  313 (499)
Q Consensus       239 ~~~~~~~~~~~~p~~~~~-~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~  313 (499)
                      +++.-.+..-+.++-..- -..|+.+-   .-..+...|...-.+..+  +.||.. .-.....++.+.|+..++-.+++
T Consensus       210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE  287 (531)
T COG3898         210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE  287 (531)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence            999887765555522211 11222221   112345556555444333  345532 23344678889999999999999


Q ss_pred             HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH-CCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF-HGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      .+-+..    |....+..  ..+.+.|+.  ++.-+++... ...+| +..+.-.+..+-...|++..|..--+...+  
T Consensus       288 ~aWK~e----PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--  357 (531)
T COG3898         288 TAWKAE----PHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--  357 (531)
T ss_pred             HHHhcC----CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence            998854    55554433  234555653  2222332222 11344 445666777788888999888877666655  


Q ss_pred             CCCChhhHHHHHHHHh-ccCChhHHHHHHHHHHHCC
Q 010830          392 WQPTPLNCATAITMLL-DADEPEIAIEIWNYILENG  426 (499)
Q Consensus       392 ~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~  426 (499)
                      ..|....|..|.+.-. ..|+-.++...+.+..+..
T Consensus       358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            4578888888877654 4599999999988887643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.80  E-value=0.00037  Score=62.72  Aligned_cols=129  Identities=14%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      +|..+++...+.+..+.|..+|.+..+.+ +..++....++|..++ . ++.+.|..+|+...+.+..+...|...++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~-~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-N-KDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-C-S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            45555555555555666666666655432 1233333333333322 1 4455566666665555555666666666666


Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchH---HhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .+.|+.+.|..+|++....   .|.+.   ..|..++..-.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666442   22111   3555555555555666666555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.80  E-value=0.00063  Score=61.28  Aligned_cols=131  Identities=12%  Similarity=0.079  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      .+|..+++..-+.+..+.|+.+|.+.++.+..+...|......-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            5788899999999999999999999997766566667666666333 67778899999998765 355677888888888


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDG---DSFAILLEGWEKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  246 (499)
                      ... ++.+.|..+|++....+.++.   ..|...++.=.+.|+++.+.++.+++.+.
T Consensus        81 ~~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888 999999999999877654443   58999999999999999999999998764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.76  E-value=0.057  Score=54.24  Aligned_cols=222  Identities=16%  Similarity=0.098  Sum_probs=155.0

Q ss_pred             cCCchhHHHHHHHhcCCCC--CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQR--LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      .++...|+.....+.+..+  +-..++.++  .+.|.|+.++|..+++.....+..|..|...+-..|...|+.++|..+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            3455566666665544222  223333333  357889999999999998888878999999999999999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----------CHHHHHHH
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG----------NVEEANKT  239 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~a~~~  239 (499)
                      |++....  .|+..-...+..+|++. +.+.+-.+.--++-+..+.+...+=+++..+...-          -.--|.+.
T Consensus       100 Ye~~~~~--~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  100 YERANQK--YPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHhh--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            9999765  78877778888889988 88777666655555555566665555555554321          12346777


Q ss_pred             HHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH-HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ++.+.+..| ...+..-...-...+...|++++|++++. ...+.-..-+...-+.-++.+...+++.+..++-.++...
T Consensus       177 ~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  177 VQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            777777643 22233333333445566788999999994 3444433344455556778888999999999999999988


Q ss_pred             C
Q 010830          319 G  319 (499)
Q Consensus       319 ~  319 (499)
                      |
T Consensus       256 ~  256 (932)
T KOG2053|consen  256 G  256 (932)
T ss_pred             C
Confidence            7

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.00062  Score=56.44  Aligned_cols=106  Identities=11%  Similarity=0.021  Sum_probs=57.7

Q ss_pred             CCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHH
Q 010830          358 FPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA  432 (499)
Q Consensus       358 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  432 (499)
                      ..|..+|..++..|.+.     |..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+-               |. .
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n  106 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N  106 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence            34677777777777653     4555556666677777777777777777777654 2211               00 0


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      .+..+..-|  -.+-+-|++++++|...|+.||..|+..|++.|.+.+..
T Consensus       107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence            000000001  112234555666666666666666666666666555544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00065  Score=49.58  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=25.3

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS  174 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  174 (499)
                      +...+...|++++|.+.++...+....+...+..+...+...|++++|.+.|+...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   61 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL   61 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455444444444433333344444444444444444444444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.71  E-value=0.014  Score=51.33  Aligned_cols=59  Identities=10%  Similarity=0.049  Sum_probs=36.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhH---HHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY---ETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      .....+.+.|++++|.+.|+++...   .|.+....   -.++.++.+.+++++|...+++..+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            3444455677777777777777654   33332222   34556677777777777777776654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.012  Score=53.25  Aligned_cols=208  Identities=13%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG--V----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL  188 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  188 (499)
                      .|......|-..|++++|.+.|....+..  .    .-...|......|.+. ++++|.+.++..               
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A---------------  100 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA---------------  100 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence            33344456666677777766665543221  0    0111233333333222 444444444433               


Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHH
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE-GNVEEANKTFGEMVERFEWNP---EHVLAYETFLITL  264 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~  264 (499)
                      +..|... |++..|-..+..              +...|-+. |++++|.+.|++..+-+...-   .-..++..+...+
T Consensus       101 ~~~y~~~-G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen  101 IEIYREA-GRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHHHHHC-T-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            2344455 666555555443              34455555 777777777776644311111   0123456667777


Q ss_pred             hcCCCHHHHHHHHHHHhhCCCCC-----CHh-hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHH
Q 010830          265 IRGKQVDEALKFLRVMKGENCFP-----TLK-FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLL  336 (499)
Q Consensus       265 ~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~  336 (499)
                      .+.|++++|.++|++....-...     +.. .|...+-++...|+...|...+++.......+..  .......||.+|
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~  245 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY  245 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence            88888888888888776543221     111 2223344555667777887777777654211211  234455556665


Q ss_pred             HcC--CChHHHHHHHHHHH
Q 010830          337 CNN--DDVDNVFRFFDQMV  353 (499)
Q Consensus       337 ~~~--~~~~~a~~~~~~m~  353 (499)
                      -..  ..++.++.-|+.+.
T Consensus       246 ~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  246 EEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HTT-CCCHHHHCHHHTTSS
T ss_pred             HhCCHHHHHHHHHHHcccC
Confidence            432  23555555555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.69  E-value=0.017  Score=52.28  Aligned_cols=191  Identities=14%  Similarity=0.148  Sum_probs=93.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV  300 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  300 (499)
                      ...|-..|++++|.+.|.+..+-.   +-...-...|.....+|.+. ++++|++.+++               .+..|.
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~~~y~  105 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AIEIYR  105 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HHHHHH
Confidence            345556666776666666553310   00000112233333333222 44444444433               344555


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-CChHHHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHh
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-DDVDNVFRFFDQMVFH----GAFPD--SLTYNMIFECLIK  373 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~  373 (499)
                      +.|++..|-+.+..                 +...|-.. |++++|++.|++..+.    | .+.  ...+..+...+.+
T Consensus       106 ~~G~~~~aA~~~~~-----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  106 EAGRFSQAAKCLKE-----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HCT-HHHHHHHHHH-----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence            66666655444443                 33445555 6777887777776542    2 111  2345566667788


Q ss_pred             cCCHhHHHHHHHHHHHCCCCC-----Chh-hHHHHHHHHhccCChhHHHHHHHHHHHC--CCCC--hHHHHHHHHHHHHh
Q 010830          374 NKRVHEVEKFFHEMIKNEWQP-----TPL-NCATAITMLLDADEPEIAIEIWNYILEN--GILP--LEASANELLVGLRN  443 (499)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~~p-----~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~ll~~~~~  443 (499)
                      .|++++|.++|++........     +.. .|...+-++...|+...|.+.+++....  ++..  .......|+.++- 
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-  246 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-  246 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence            888888888888877643221     111 1222333455567888888888877642  2322  2344555666653 


Q ss_pred             CCChHH
Q 010830          444 LGRLSD  449 (499)
Q Consensus       444 ~g~~~~  449 (499)
                      .||.+.
T Consensus       247 ~~D~e~  252 (282)
T PF14938_consen  247 EGDVEA  252 (282)
T ss_dssp             TT-CCC
T ss_pred             hCCHHH
Confidence            344333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.64  E-value=0.00093  Score=48.71  Aligned_cols=92  Identities=20%  Similarity=0.236  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      +..+...+...|++++|.++++...+.. +.+...+..+...+... +++++|.+.++......+.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            3445555556666666666666655432 12223344444444444 555555555555444333333445555555555


Q ss_pred             cCCHHHHHHHHHHH
Q 010830          230 EGNVEEANKTFGEM  243 (499)
Q Consensus       230 ~g~~~~a~~~~~~~  243 (499)
                      .|+.+.|...+...
T Consensus        81 ~~~~~~a~~~~~~~   94 (100)
T cd00189          81 LGKYEEALEAYEKA   94 (100)
T ss_pred             HHhHHHHHHHHHHH
Confidence            55555555555444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.63  E-value=0.00025  Score=48.32  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      .+.|++++|+++|+.+....+.+...+..+..+|.+.|++++|.++++.+...  .|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            46788999999999998888888888888999999999999999999888776  56655555554

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.62  E-value=0.0021  Score=50.85  Aligned_cols=93  Identities=10%  Similarity=-0.051  Sum_probs=48.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK  301 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  301 (499)
                      .+...+...|++++|.++|+.+..   +.|.+..-|..|.-++-..|++++|+..|........ -|...+-.+-.++..
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~  115 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence            334444455555555555555532   2444555555555555555555555555555554442 334444455555555


Q ss_pred             cCCHhHHHHHHHHHHhc
Q 010830          302 LNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       302 ~~~~~~a~~~~~~~~~~  318 (499)
                      .|+.+.|.+-|+..+..
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            55555555555555543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.56  E-value=0.0023  Score=53.15  Aligned_cols=86  Identities=10%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             CHhHHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----------------CCHhHHHHH
Q 010830          325 NLIMYNAVIGLLCN-----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN----------------KRVHEVEKF  383 (499)
Q Consensus       325 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~a~~~  383 (499)
                      +-.+|..+++.|.+     .|..+=....+..|.+.|+.-|..+|+.|++.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44445555554442     244555555555666666666666666666554331                123445566


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHhccC
Q 010830          384 FHEMIKNEWQPTPLNCATAITMLLDAD  410 (499)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~li~~~~~~g  410 (499)
                      +++|...|+-||..++..+++.|.+.+
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            666666666666666666666554433

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.54  E-value=0.0013  Score=61.44  Aligned_cols=97  Identities=12%  Similarity=-0.015  Sum_probs=68.6

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..++++.|++.|+.+.+..+.+...|..+..+|.+.|++++|+..++++.+.++.+...|..+..+|...|++++|...|
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~   93 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL   93 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            45677777777777766666677777777777777777777777777777777666777777777777777777777777


Q ss_pred             HHHHhCCCCcCHHHHHHHH
Q 010830          171 DVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll  189 (499)
                      +...+.  .|+.......+
T Consensus        94 ~~al~l--~P~~~~~~~~l  110 (356)
T PLN03088         94 EKGASL--APGDSRFTKLI  110 (356)
T ss_pred             HHHHHh--CCCCHHHHHHH
Confidence            777654  45444444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.52  E-value=0.0069  Score=50.24  Aligned_cols=91  Identities=10%  Similarity=0.016  Sum_probs=50.6

Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++..+..   +.+...+.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~  110 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALN  110 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHH
Confidence            344455555666666666666666666554332111  2455556666666677777776666666543   23455555


Q ss_pred             HHHHHHHcCCChHHHH
Q 010830          331 AVIGLLCNNDDVDNVF  346 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~  346 (499)
                      .+...|...|+...+.
T Consensus       111 ~lg~~~~~~g~~~~a~  126 (172)
T PRK02603        111 NIAVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHHHcCChHhHh
Confidence            5555666655544433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.52  E-value=0.0017  Score=60.73  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=42.8

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |+++.|+..|++.....+.+...|..+..+|.+.|++++|+..+++..+   +.|++...|..+..+|...|++++|+..
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4555555555554443344444555555555555555555555555533   2444445555555555555555555555


Q ss_pred             HHHHhh
Q 010830          277 LRVMKG  282 (499)
Q Consensus       277 ~~~m~~  282 (499)
                      |++..+
T Consensus        93 ~~~al~   98 (356)
T PLN03088         93 LEKGAS   98 (356)
T ss_pred             HHHHHH
Confidence            555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.50  E-value=0.018  Score=45.74  Aligned_cols=88  Identities=15%  Similarity=0.092  Sum_probs=38.1

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830          156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE  235 (499)
Q Consensus       156 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  235 (499)
                      .+...|++++|.++|+.+...  .|....|-.=+.++.+..|++++|+..|...-.-.+.|...+-.+..++...|+.+.
T Consensus        44 ~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~  121 (157)
T PRK15363         44 QLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY  121 (157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence            344445555555555544433  233332222222222222444444444444433333444444444444555555555


Q ss_pred             HHHHHHHHhH
Q 010830          236 ANKTFGEMVE  245 (499)
Q Consensus       236 a~~~~~~~~~  245 (499)
                      |.+-|+....
T Consensus       122 A~~aF~~Ai~  131 (157)
T PRK15363        122 AIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHH
Confidence            5555444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.49  E-value=0.022  Score=48.70  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ...+...|++++|.+.|+.+...+...|--....-.++.++.+.|+++.|...+++..+
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33445566666666666666655433333344455566666666666666666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.46  E-value=0.0093  Score=58.48  Aligned_cols=146  Identities=10%  Similarity=0.065  Sum_probs=77.9

Q ss_pred             cCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830          212 IVDPDGDSFAILLEGWEKE-----GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF  286 (499)
Q Consensus       212 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  286 (499)
                      ..+.|...|...+++....     ++.+.|..+|++..+.   .|++...|..+..++.....+               .
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~---------------~  393 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQ---------------Q  393 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhc---------------C
Confidence            4456777777777765432     2366788888888554   776666666554443221110               0


Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830          287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM  366 (499)
Q Consensus       287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  366 (499)
                      +..            ..++..+.+.......... .+.+...|..+...+...|++++|...+++..+.  .|+...|..
T Consensus       394 ~~~------------~~~l~~a~~~~~~a~al~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~  458 (517)
T PRK10153        394 PLD------------EKQLAALSTELDNIVALPE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVL  458 (517)
T ss_pred             Ccc------------HHHHHHHHHHHHHhhhccc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            100            0111222222222222100 1223455555555555556677777777666663  356666666


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHC
Q 010830          367 IFECLIKNKRVHEVEKFFHEMIKN  390 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~~~~  390 (499)
                      +...+...|+.++|.+.+++....
T Consensus       459 lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        459 LGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc
Confidence            666666677777777777666553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.46  E-value=0.0077  Score=49.96  Aligned_cols=64  Identities=8%  Similarity=-0.006  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV--L-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ...|..+...+...|++++|...|++..+...  + ....+..+...+.+.|++++|...+++..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34555555666666666666666666654432  1 1345556666666666666666666665543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.44  E-value=0.00036  Score=49.92  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=9.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q 010830          223 LLEGWEKEGNVEEANKTFGE  242 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~  242 (499)
                      +..+|.+.|++++|..+++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            44444444444444444444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.40  E-value=0.00077  Score=45.38  Aligned_cols=58  Identities=14%  Similarity=0.179  Sum_probs=45.6

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      +...+.+.|++++|++.|+.+.+..+.+...+..+..++...|++++|..+|+++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456778888888888888888888777788888888888888888888888887654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.38  E-value=0.00066  Score=46.22  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .|++++|.++|+++.+.   .|++...+..+..+|.+.|++++|.++++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444332   343444444444444444444444444444443

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.064  Score=45.97  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc------cCCCCHHHHHHH
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK------IVDPDGDSFAIL  223 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l  223 (499)
                      .+.++..+...|.+.-...++.+..+..-+.+......|.+.-.+. ||.+.|...|+.+++      +...+..+....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3445555555566666666666666554344555555555555555 666666666665543      122222222233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      ...|.-++++..|...|.++...   .|.++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~---D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRM---DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhcccc---CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444455566666666555443   3334444444444444455556666666555553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.33  E-value=0.023  Score=48.57  Aligned_cols=180  Identities=12%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHHH
Q 010830          116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLS  190 (499)
Q Consensus       116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~  190 (499)
                      +-.....+...|++++|.+.|+.+....+   ......-.++.++.+.|+++.|...++...+.  .|+.  ..+...+.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHH
Confidence            33444567788899999999999887754   23446777888888999999999999987654  3332  12222222


Q ss_pred             HHHccCCchHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830          191 AICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG  267 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~  267 (499)
                      +.+.. .......    .....   ...-...+..++.-|=...-..+|.+.+..+.+.      =...--.+...|.+.
T Consensus        86 g~~~~-~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~------la~~e~~ia~~Y~~~  154 (203)
T PF13525_consen   86 GLSYY-KQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR------LAEHELYIARFYYKR  154 (203)
T ss_dssp             HHHHH-HHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH------HHHHHHHHHHHHHCT
T ss_pred             HHHHH-HhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHc
Confidence            22211 1110000    00000   0000122334444454555555665555555443      112223356677777


Q ss_pred             CCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHcCCHhHH
Q 010830          268 KQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHA  308 (499)
Q Consensus       268 ~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a  308 (499)
                      |.+..|..-++.+.+.=  ..........++.+|.+.|..+.+
T Consensus       155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            77777777777776642  111123445566667776666643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.015  Score=50.80  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE  272 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~  272 (499)
                      .+. +++.+|+..|.+...-.+.|.+.|..-..+|.+.|.++.|++-.+...   .+.|....+|..|-.+|...|++++
T Consensus        92 m~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   92 MKN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcHHH
Confidence            344 788888888888777777788888888888888888888887777763   4567667788888888888888888


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830          273 ALKFLRVMKGENCFPTLKFFSNALD  297 (499)
Q Consensus       273 a~~~~~~m~~~~~~p~~~~~~~li~  297 (499)
                      |++.|++..+  +.|+-.+|-.=++
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHH
Confidence            8888877665  3476666654443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.19  Score=49.24  Aligned_cols=121  Identities=13%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-C---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-V---------LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV  178 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  178 (499)
                      ..|.+..|..+.......-.++-|...|-+...-. +         .+...-.+=|.+  --|++++|+++|-+|.++.+
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL  765 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL  765 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence            67888888888887777777777777775554322 1         111111222222  24788888888887765432


Q ss_pred             CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       179 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                               .+..+.+. |++-.+.++++.=-.+  ...-...|+.+...++....+++|.+.|.
T Consensus       766 ---------Aielr~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  766 ---------AIELRKKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             ---------hHHHHHhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     23333344 5555555444331111  01112344444444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.32  E-value=0.0043  Score=51.26  Aligned_cols=44  Identities=16%  Similarity=0.062  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI  265 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~  265 (499)
                      ++..+...|...|++++|.+.+++..+.   .|....++..+...+.
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i~~  117 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHH
Confidence            4555555555556666665555555332   3333344444444444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.31  E-value=0.00069  Score=48.43  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             CChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830          161 GKYDEAVMSFDVMSMHGV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT  239 (499)
Q Consensus       161 g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  239 (499)
                      |+++.|+.+++++.+... .++...+-.+..++.+. |++++|..+++....+ ..+....-.+..+|.+.|++++|.++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQKLKLD-PSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHCHTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            445555555555544321 01222233344444444 5555555555441111 12223333345555555555555555


Q ss_pred             HHH
Q 010830          240 FGE  242 (499)
Q Consensus       240 ~~~  242 (499)
                      |++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.30  E-value=0.0012  Score=44.44  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ...+.+.|++++|.+.|+++.+.   .|++...+..+..++...|++++|...|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566677777777777777543   466666777777777777777777777776654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.076  Score=48.61  Aligned_cols=176  Identities=14%  Similarity=0.018  Sum_probs=112.4

Q ss_pred             HHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHhHHH--------
Q 010830          297 DILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL--LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM--------  366 (499)
Q Consensus       297 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--------  366 (499)
                      .++.-.|+.+.|.++--.+++..     ....+...+++  +.-.++.+.+...|++.++.  .|+...-..        
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~l  249 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-----ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKL  249 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-----cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHH
Confidence            45566788888888887777764     22233333333  34456788888888887763  344332211        


Q ss_pred             -----HHHHHHhcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          367 -----IFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       367 -----ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                           =.+-..+.|.+..|.+.|.+.+..   ..+++...|.....+..+.|+..+|+.-.++..+.+   +..+.-.+.
T Consensus       250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~  326 (486)
T KOG0550|consen  250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLR  326 (486)
T ss_pred             HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHH
Confidence                 122245778999999999998875   455666677777778888999999998888776632   122223333


Q ss_pred             --HHHHhCCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHHhcccc
Q 010830          439 --VGLRNLGRLSDVRRFAEEMLNRRIL-IYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       439 --~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~  482 (499)
                        .++.-.++|++|.+-++...+..-. -...++.....++-++.+.
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk  373 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK  373 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh
Confidence              3344558899999988887754322 2445666666666655443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.15  Score=46.86  Aligned_cols=222  Identities=11%  Similarity=0.004  Sum_probs=107.1

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD-  171 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-  171 (499)
                      .++..|+..+..+....+.++.-|..-...+..-|++++|.--.+.-.+...-....+.-.-+++...++..+|.+.++ 
T Consensus        63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~  142 (486)
T KOG0550|consen   63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS  142 (486)
T ss_pred             hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence            3456677777777666666777777777777777888877766554444332111122223333333333333333332 


Q ss_pred             --------------HHHhC-CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830          172 --------------VMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA  236 (499)
Q Consensus       172 --------------~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  236 (499)
                                    ..... --+|...+|-.+=.-|.-..++.++|.++--.+.+-...+......--.++.-.++.+.+
T Consensus       143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka  222 (486)
T KOG0550|consen  143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA  222 (486)
T ss_pred             hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence                          11111 112444555544444443337777777765555543333333332223334446677777


Q ss_pred             HHHHHHHhHccCCCCchHHh------------HHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHH
Q 010830          237 NKTFGEMVERFEWNPEHVLA------------YETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVK  301 (499)
Q Consensus       237 ~~~~~~~~~~~~~~p~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~  301 (499)
                      ...|++-.   ...|+....            |..-.+-..+.|.+..|.+.|.+.+.   .++.++...|........+
T Consensus       223 ~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r  299 (486)
T KOG0550|consen  223 INHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR  299 (486)
T ss_pred             HHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence            77777763   334422111            11112223444555555555554433   1233333344444444444


Q ss_pred             cCCHhHHHHHHHHHHh
Q 010830          302 LNDSTHAVQLWDIMVG  317 (499)
Q Consensus       302 ~~~~~~a~~~~~~~~~  317 (499)
                      .|+.++|+.--+...+
T Consensus       300 Lgrl~eaisdc~~Al~  315 (486)
T KOG0550|consen  300 LGRLREAISDCNEALK  315 (486)
T ss_pred             cCCchhhhhhhhhhhh
Confidence            5555555544444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.26  E-value=0.16  Score=47.15  Aligned_cols=220  Identities=12%  Similarity=0.107  Sum_probs=113.8

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHhC--C--C--C---------CHHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDV--LGKNGRFEQMWNAVRVMKED--G--V--L---------SLPTFASIFD  155 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--~--~--~---------~~~~~~~li~  155 (499)
                      ++.+..........+..+  ...|-.+..+  +-+.+.++.|.+.+..-...  +  .  .         +...=+..+.
T Consensus        59 ~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~  136 (549)
T PF07079_consen   59 NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH  136 (549)
T ss_pred             hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence            444444444444433222  2233344333  34568889999888777665  2  1  1         1112245677


Q ss_pred             HHHhcCChhHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHcc-------CCchHHHHHHHHHH-------hc------
Q 010830          156 SYCGAGKYDEAVMSFDVMSMHG----VEQDVVAVNSLLSAICRQ-------ENQTSRALEFLNRV-------KK------  211 (499)
Q Consensus       156 ~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~-------~~~~~~a~~~~~~~-------~~------  211 (499)
                      .+...|++.+++.++++|...=    ..-+..+|+.++-.+.+.       +...+-.-.+++++       ..      
T Consensus       137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y  216 (549)
T PF07079_consen  137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY  216 (549)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence            8889999999999998886543    336888888866666543       01111122222222       11      


Q ss_pred             -cCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC-
Q 010830          212 -IVDPDGDSFAILLEGWEKE--GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-  287 (499)
Q Consensus       212 -~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-  287 (499)
                       .+.|-...+..++....-.  ....--.++++.-.. .-+.|+.......++..+.+  +.+++..+-+.+....+.+ 
T Consensus       217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~L  293 (549)
T PF07079_consen  217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKL  293 (549)
T ss_pred             HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHH
Confidence             1223333333333322211  111222233333322 34555444444445555544  4555555544443322111 


Q ss_pred             ---CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          288 ---TLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       288 ---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                         -..+|..++....+.++...|.+.+.-+.-
T Consensus       294 ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  294 KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence               245777888888888888888888777665

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.25  E-value=0.011  Score=48.82  Aligned_cols=64  Identities=6%  Similarity=-0.087  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ...|..+...+...|++++|+..|+........   ...+|..+...+...|++++|++.++...+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445555666666666666666666666544321   2235666666666666666666666665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.21  E-value=0.028  Score=42.91  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      .++-..|+.++|+.+|++....|..+   ...+-.+...+...|++++|..+|++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555555555555322   22344444455555555555555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.21  E-value=0.17  Score=46.17  Aligned_cols=309  Identities=15%  Similarity=0.035  Sum_probs=197.9

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH--HccCCchHHHHHH
Q 010830          130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCG--AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRALEF  205 (499)
Q Consensus       130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~~a~~~  205 (499)
                      ..+.+.|..-++..     -|..|-.+++.  .|+-..|.++-.+-.+. +.-|......++.+-  .-. |+++.|.+-
T Consensus        70 ~t~~Ryfr~rKRdr-----gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~e-G~~~~Ar~k  142 (531)
T COG3898          70 YTARRYFRERKRDR-----GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLE-GDYEDARKK  142 (531)
T ss_pred             HHHHHHHHHHHhhh-----HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhc-CchHHHHHH
Confidence            34444554444331     26666666554  46778887776654321 233444444444332  224 999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-
Q 010830          206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-  284 (499)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-  284 (499)
                      |+.|......-..-...|.-...+.|+.+.|...-+...+   ..|.-...+...+...+..|+|+.|+++++.-+... 
T Consensus       143 feAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v  219 (531)
T COG3898         143 FEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV  219 (531)
T ss_pred             HHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence            9999763222223333444445678999999998888844   466566788999999999999999999998876533 


Q ss_pred             CCCCHhh--HHHHHHHHH---HcCCHhHHHHHHHHHHhcCCCCCCCHhHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830          285 CFPTLKF--FSNALDILV---KLNDSTHAVQLWDIMVGIGFNLMPNLIMYN-AVIGLLCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       285 ~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      +.++..-  -..|+.+-.   -..+...|...-.+..+    +.||..--. .-..++.+.|+..++-.+++.+-+....
T Consensus       220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            4444322  122332221   12456777777777666    445544322 2346789999999999999999986555


Q ss_pred             CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHH
Q 010830          359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE  436 (499)
Q Consensus       359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  436 (499)
                      |++  +    ..|.+..--+.+..-+++..+. .++|| ......+..+-...|++..|..--+...+  ..|....|-.
T Consensus       296 P~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL  367 (531)
T COG3898         296 PDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL  367 (531)
T ss_pred             hHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence            543  2    2344433334455555544432 34444 45566677777888999888877766655  5788888887


Q ss_pred             HHHHH-HhCCChHHHHHHHHHHHHc
Q 010830          437 LLVGL-RNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       437 ll~~~-~~~g~~~~a~~~~~~m~~~  460 (499)
                      |.+.- ...||-.++..++-+.+..
T Consensus       368 lAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         368 LADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHhhccCchHHHHHHHHHHhcC
Confidence            77664 4569999999999888765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.20  E-value=0.085  Score=42.75  Aligned_cols=132  Identities=9%  Similarity=0.015  Sum_probs=85.2

Q ss_pred             CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCChhh
Q 010830          322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTPLN  398 (499)
Q Consensus       322 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~  398 (499)
                      ..|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+..   -.|  .+
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence            4566666667777777888888888888777664445566667777777777788888887777776642   223  34


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 010830          399 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM  457 (499)
Q Consensus       399 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m  457 (499)
                      ...+.+.+...|.++.|+.-|+.....--.|....|  .-..+.+.|+.+++..-+.+.
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence            455667777777887788777777764323333333  333455667666665444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.17  E-value=0.002  Score=43.94  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHh
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSM  175 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  175 (499)
                      ++..|..+...+...|++++|+..|++..+.++.+...|..+..+|...| ++++|++.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            45678888888888888888888888888888778888888888888888 68888888887764

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.018  Score=50.56  Aligned_cols=126  Identities=10%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             HHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc---CCHhHHHHHHHH
Q 010830          238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---NDSTHAVQLWDI  314 (499)
Q Consensus       238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~  314 (499)
                      ++...++.+..-+|+|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++...   ....++.+++++
T Consensus       140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         140 ALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            33334444445578888888888888888888888888888776632 23444555555444433   235677788888


Q ss_pred             HHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 010830          315 MVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE  369 (499)
Q Consensus       315 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  369 (499)
                      +++.+   +-|+.+..-|...+...|++.+|...|+.|.+.  -|....+..+|.
T Consensus       219 al~~D---~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie  268 (287)
T COG4235         219 ALALD---PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE  268 (287)
T ss_pred             HHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence            88765   446666677777788888888888888888874  233334444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.15  E-value=0.031  Score=54.90  Aligned_cols=137  Identities=10%  Similarity=-0.010  Sum_probs=69.4

Q ss_pred             CCcCHHHHHHHHHHHHcc----CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhH
Q 010830          178 VEQDVVAVNSLLSAICRQ----ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG--------NVEEANKTFGEMVE  245 (499)
Q Consensus       178 ~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~  245 (499)
                      ...+...|...+++....    .++.+.|..+|++..+..+.....|..+..+|....        ++..+.+...+...
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            356778888888775432    134668888888887755555666665544442221        11222222222211


Q ss_pred             ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      . ...|.+...|..+.-.....|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++...
T Consensus       413 l-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        413 L-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             c-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            1 1122233444444444444455555555555555443  3444555555555555555555555555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.09  E-value=0.22  Score=45.55  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI  298 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  298 (499)
                      +.+.-+.-+...|+...|.++-.+.    .+ | +..-|-..+.+++..++|++-.++-..    .  -++.-|..++.+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~-dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~  246 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-P-DKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA  246 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc----CC-c-HHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH
Confidence            4555566777788888887776555    22 3 777888899999999999887765432    1  234778888999


Q ss_pred             HHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          299 LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       299 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      |.+.|...+|..++..+.            +..-+..|.++|++.+|.+.-.+..
T Consensus       247 ~~~~~~~~eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKIP------------DEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHCCCHHHHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            999999888887766521            2456778888898888877654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.08  E-value=0.0039  Score=42.47  Aligned_cols=64  Identities=19%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC-CHHHHHHHHHHHhh
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKG  282 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~  282 (499)
                      +..+|..+...+.+.|++++|+..|++..+.   .|++...|..+..++.+.| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3456666677777777777777777777553   5666667777777777777 57777777766543

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.06  E-value=0.015  Score=51.60  Aligned_cols=88  Identities=11%  Similarity=0.093  Sum_probs=41.5

Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHHc
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKL  302 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~  302 (499)
                      .+.|++++|...|+.+.+.   .|++   ...+..+...|...|++++|...|+.+.+.-  -......+..+..++...
T Consensus       154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK  230 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence            3445555555555555443   2322   2344455555555555555555555554321  011122233334444555


Q ss_pred             CCHhHHHHHHHHHHhc
Q 010830          303 NDSTHAVQLWDIMVGI  318 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~  318 (499)
                      |+.+.|..+|+.+++.
T Consensus       231 g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        231 GDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            5556666655555553

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.04  E-value=0.32  Score=47.36  Aligned_cols=56  Identities=11%  Similarity=-0.030  Sum_probs=34.1

Q ss_pred             CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      +..+...+...+.+...+.-|-++|..|-+         ...+++.....+++.+|..+-+..-+
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence            344455555555566667777777777654         23455566677777777777665533

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.03  E-value=0.061  Score=41.04  Aligned_cols=56  Identities=13%  Similarity=0.032  Sum_probs=26.4

Q ss_pred             HHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          262 ITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       262 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .++-..|+.++|+.+|++....|....  ...+..+-.++...|++++|..+++....
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444555555555555555443322  12233344444555555555555555444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.03  E-value=0.39  Score=47.21  Aligned_cols=106  Identities=12%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (499)
                      +|+.+...++....+++|.+.|..-...         ...+.++.+. .++++.+.+-+    .++.+....-.+.+++.
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~l-e~f~~LE~la~----~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRL-ELFGELEVLAR----TLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHH-HhhhhHHHHHH----hcCcccchHHHHHHHHH
Confidence            5555555555555555555555432110         1123333333 33333333322    23445555666777777


Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV  279 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~  279 (499)
                      ..|..++|.+.|-+...     |      ...+..|...++|.+|.++-++
T Consensus       864 svGMC~qAV~a~Lr~s~-----p------kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYLRRSL-----P------KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             hhchHHHHHHHHHhccC-----c------HHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777776654321     1      1245566666777777666544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.02  E-value=0.018  Score=52.39  Aligned_cols=267  Identities=12%  Similarity=0.066  Sum_probs=153.3

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHH--h--CCCCc-CHHHHHHHHHH
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMS--M--HGVEQ-DVVAVNSLLSA  191 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~g~~p-~~~~~~~ll~~  191 (499)
                      .-+++.|+...-+.+|+...+.|..|..    +|..|..+|.-.+++++|++....=.  .  .|-+. ...+...|-..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            4478888888888999888888865533    56667777888888888887764311  0  01000 00111111122


Q ss_pred             HHccCCchHHHHHHHHHH----hc-cC-CCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhH
Q 010830          192 ICRQENQTSRALEFLNRV----KK-IV-DPDGDSFAILLEGWEKEGN--------------------VEEANKTFGEMVE  245 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~----~~-~~-~~~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~  245 (499)
                      +--. |.+++|.....+-    ++ |. ......+..+...|...|+                    ++.|.++|.+-.+
T Consensus       105 lKv~-G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  105 LKVK-GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhh-cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            2222 5555555443221    11 11 1122344445555554432                    2334444433211


Q ss_pred             ---ccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH----hhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHH-
Q 010830          246 ---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM----KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV-  316 (499)
Q Consensus       246 ---~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-  316 (499)
                         ..|-...-...|..|.+.|.-.|+++.|+...+.-    ++-|-. .....+..+-+++.-.|+++.|.+.|+... 
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence               11111112235666667777778999998776542    222311 223466778888888899999999887654 


Q ss_pred             ---hcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH----CC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          317 ---GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF----HG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       317 ---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                         +.|. -........+|...|.-..++++|+.++.+-..    .+ ..-....+.+|..+|...|..++|+.+.+..+
T Consensus       264 LAielg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  264 LAIELGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence               3331 123456677788888888889999888765332    11 11234678888889999999999888776655


Q ss_pred             H
Q 010830          389 K  389 (499)
Q Consensus       389 ~  389 (499)
                      +
T Consensus       343 ~  343 (639)
T KOG1130|consen  343 R  343 (639)
T ss_pred             H
Confidence            4

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.042  Score=48.32  Aligned_cols=109  Identities=11%  Similarity=0.154  Sum_probs=60.3

Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--cCCchHHHHHHHHHHhccC
Q 010830          136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIV  213 (499)
Q Consensus       136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~  213 (499)
                      ++.-...++-|...|-.|...|...|+++.|..-|....+.. .++...+..+-.++..  .+.+..++..+|+++....
T Consensus       145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D  223 (287)
T COG4235         145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD  223 (287)
T ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence            333344455566667777777777777777777776665542 2333333333333222  1133445556666665555


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      +.|+.+...|...+...|++.+|...|+.|.+
T Consensus       224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            55555555566666666666666666666643

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.94  E-value=0.021  Score=44.00  Aligned_cols=103  Identities=11%  Similarity=0.093  Sum_probs=68.7

Q ss_pred             CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHH
Q 010830          360 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV  439 (499)
Q Consensus       360 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  439 (499)
                      |..++..+|.++++.|+.+....+++..-  |+.++...         ..+.         .-....+.|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence            45677778888888888777777765543  22222110         0000         1123456788888888888


Q ss_pred             HHHhCCChHHHHHHHHHHHH-cCCccCHHHHHHHHHHHHhcccc
Q 010830          440 GLRNLGRLSDVRRFAEEMLN-RRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       440 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      +|+..|++..|.++++...+ -++..+..+|..|++-+...-+.
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~  104 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK  104 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence            88888888888888888765 46777788888888876665543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0066  Score=41.88  Aligned_cols=63  Identities=11%  Similarity=0.072  Sum_probs=53.0

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA  184 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  184 (499)
                      -..|.+.++++.|+++++.+...++.+...|......+.+.|++++|.+.|+...+.  .|+...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence            356788899999999999999998888888999999999999999999999998866  444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.93  E-value=0.0061  Score=49.00  Aligned_cols=70  Identities=13%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCcCHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS-----MHGVEQDVVA  184 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~  184 (499)
                      +...++..+...|++++|.++.+.+...++.+...|..+|.+|...|+...|.++|+.+.     +.|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            445556666677788888888887777777777778888888888888888877777763     3466666654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.83  E-value=0.53  Score=45.63  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChhHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKN-GRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~---~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      .|..+.+.++|+....+.+.+...|...+..+... |+.+...+.|+......   ..+...|...|..-..++++....
T Consensus        92 lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~  171 (577)
T KOG1258|consen   92 LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVA  171 (577)
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHH
Confidence            36678889999988888999999998888766654 78888888998887654   467778999999989999999999


Q ss_pred             HHHHHHHhC
Q 010830          168 MSFDVMSMH  176 (499)
Q Consensus       168 ~~~~~m~~~  176 (499)
                      .+++++++.
T Consensus       172 ~iyeRilei  180 (577)
T KOG1258|consen  172 NIYERILEI  180 (577)
T ss_pred             HHHHHHHhh
Confidence            999999853

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.82  E-value=0.014  Score=50.98  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=51.8

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      +++++|+..|..+....+.|.+.|..-..+|.+.|.++.|++=-+.....++-...+|..|-.+|...|++++|.+.|++
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence            45555555555555555555555555555666666666555555555555544455555566666666666666655555


Q ss_pred             HHhCCCCcCHHHHH
Q 010830          173 MSMHGVEQDVVAVN  186 (499)
Q Consensus       173 m~~~g~~p~~~~~~  186 (499)
                      .++.  .|+..+|-
T Consensus       175 aLel--dP~Ne~~K  186 (304)
T KOG0553|consen  175 ALEL--DPDNESYK  186 (304)
T ss_pred             hhcc--CCCcHHHH
Confidence            5443  45555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.80  E-value=0.055  Score=43.40  Aligned_cols=56  Identities=13%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ++..+...|+++.|..+.+.+....   +-|...|..+|.+|...|+...|.++|+++.
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4444445555555555555555543   3345555555555555555555555555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.79  E-value=0.45  Score=44.39  Aligned_cols=136  Identities=12%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             hcCCchhHHHHHHHhcCCCCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHhcCC
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLS------PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS--YCGAGK  162 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~  162 (499)
                      ..++..+|.++|-.+......+      ...-+.++++|... +.+.....+....+....+  .|-.+..+  +-+.+.
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~   94 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKE   94 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhh
Confidence            4577888888887775433333      23345666666654 5666666666666554422  34444433  456788


Q ss_pred             hhHHHHHHHHHHhC--CCCcCH-----------HH-HHHHHHHHHccCCchHHHHHHHHHHhc-----cCCCCHHHHHHH
Q 010830          163 YDEAVMSFDVMSMH--GVEQDV-----------VA-VNSLLSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAIL  223 (499)
Q Consensus       163 ~~~A~~~~~~m~~~--g~~p~~-----------~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l  223 (499)
                      +++|.+.+....+.  +-.+.-           .. -+....++... |.+.+++.+++++..     ....+..+|+-+
T Consensus        95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~  173 (549)
T PF07079_consen   95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSDMYDRA  173 (549)
T ss_pred             HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence            88888888877655  334421           11 13445566667 899999999888755     334688888887


Q ss_pred             HHHHHhc
Q 010830          224 LEGWEKE  230 (499)
Q Consensus       224 l~~~~~~  230 (499)
                      +-.+++.
T Consensus       174 vlmlsrS  180 (549)
T PF07079_consen  174 VLMLSRS  180 (549)
T ss_pred             HHHHhHH
Confidence            7777664

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.79  E-value=0.022  Score=51.87  Aligned_cols=265  Identities=12%  Similarity=0.047  Sum_probs=159.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcCHH----HHHHHHHHHHccCCchHHHHHHHHH---Hhc--c-CCCCHHHHHHHH
Q 010830          155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AVNSLLSAICRQENQTSRALEFLNR---VKK--I-VDPDGDSFAILL  224 (499)
Q Consensus       155 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~a~~~~~~---~~~--~-~~~~~~~~~~ll  224 (499)
                      .-+++.|+.......|+..++.| .-|..    .|..|-.+|.-. +++++|+++...   +.+  | -.-.......|.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL-~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYL-KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhH-hhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            45789999999999999999887 44443    455566667667 899999988543   111  1 111222333444


Q ss_pred             HHHHhcCCHHHHHHHHHH----HhHccCCCCchHHhHHHHHHHHhcCCC--------------------HHHHHHHHHH-
Q 010830          225 EGWEKEGNVEEANKTFGE----MVERFEWNPEHVLAYETFLITLIRGKQ--------------------VDEALKFLRV-  279 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~----~~~~~~~~p~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~-  279 (499)
                      +.+--.|.+++|.-...+    ..+ .|-..-....+..+...|...|+                    ++.|.++|.+ 
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~are-LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARE-LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHH-HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            445556677766533221    111 12111123345556666655532                    3445555543 


Q ss_pred             ---HhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHH----hcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHH
Q 010830          280 ---MKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMV----GIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQ  351 (499)
Q Consensus       280 ---m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  351 (499)
                         +.+.|-. .-...|..|-+.|.-.|+++.|+...+.-+    +.|. -......+..+..++.-.|+++.|.+.|+.
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence               1122200 112345566666777789999988776533    2230 112345677888888889999999998876


Q ss_pred             HHH----CCC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          352 MVF----HGA-FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-----EWQPTPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       352 m~~----~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                      -..    .|- .....+.-+|...|.-..++++|+.++.+-+..     ..--....|.+|..+|...|..++|..+.+.
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            543    221 123345566777888888899998888764431     1112456788899999999999998887765


Q ss_pred             HH
Q 010830          422 IL  423 (499)
Q Consensus       422 m~  423 (499)
                      -.
T Consensus       341 hl  342 (639)
T KOG1130|consen  341 HL  342 (639)
T ss_pred             HH
Confidence            54

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.3  Score=42.04  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHH----
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI----  403 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li----  403 (499)
                      +.+.++..+...|++.-....+++..+.....++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3445555555555666666666666655444455555666666666666666666666555432233333333322    


Q ss_pred             -HHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          404 -TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       404 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                       ..|...+++..|...+.++...+ ..|+...|.=.-++.-.|+..+|.+.++.|++.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             22334455666666665555433 122233333222333446666666666666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.77  E-value=0.47  Score=44.22  Aligned_cols=95  Identities=5%  Similarity=-0.023  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010830           98 AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG  177 (499)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  177 (499)
                      -+++-+.+. ..+.|..+|-.||.-+...|..++..+++++|...-+.-..+|..-+.+-....++...+.+|.+.... 
T Consensus        28 ~lrLRerIk-dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-  105 (660)
T COG5107          28 ELRLRERIK-DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-  105 (660)
T ss_pred             HHHHHHHhh-cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence            345555543 477889999999999999999999999999999887666778999999988899999999999998876 


Q ss_pred             CCcCHHHHHHHHHHHHcc
Q 010830          178 VEQDVVAVNSLLSAICRQ  195 (499)
Q Consensus       178 ~~p~~~~~~~ll~~~~~~  195 (499)
                       ..+...|...+.-.-+.
T Consensus       106 -~l~ldLW~lYl~YIRr~  122 (660)
T COG5107         106 -SLNLDLWMLYLEYIRRV  122 (660)
T ss_pred             -hccHhHHHHHHHHHHhh
Confidence             44566666666655444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.73  E-value=0.24  Score=40.30  Aligned_cols=131  Identities=14%  Similarity=0.076  Sum_probs=82.6

Q ss_pred             CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC---CCCCH
Q 010830          285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---AFPDS  361 (499)
Q Consensus       285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~  361 (499)
                      +.|+...-..+..++.+.|+..+|...|++...--  +.-|....-.+.++....+++..|...++++.+..   -.|| 
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-  161 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-  161 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence            44666666667777777777777777777776544  45566777777777777777777777777776642   2233 


Q ss_pred             HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                       +.-.+.+.+...|...+|+.-|+..+..-  |+...-......+.+.|+.+++..-+..
T Consensus       162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         162 -GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             -chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence             23445566777777777777777777643  4444433344445566666555544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.68  E-value=0.052  Score=48.13  Aligned_cols=57  Identities=11%  Similarity=0.142  Sum_probs=26.5

Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVDP---DGDSFAILLEGWEKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  246 (499)
                      -..|... |++++|...|+.+.+..+.   ....+..+...+.+.|+.++|.++|+.+.+.
T Consensus       187 G~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        187 GQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3333444 4455555554444432222   2223333344455566666666666666544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.68  E-value=0.16  Score=38.64  Aligned_cols=139  Identities=16%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV  380 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  380 (499)
                      -.|..++..++..+.....     +..-||.+|--....-+-+-..++++..-+   -.|...          .|++...
T Consensus        14 ldG~V~qGveii~k~v~Ss-----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~----------C~NlKrV   75 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS-----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK----------CGNLKRV   75 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS------HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-----------S-THHH
T ss_pred             HhchHHHHHHHHHHHcCcC-----CccccceeeeecchhhchhHHHHHHHHHhh---hcCchh----------hcchHHH
Confidence            3466777777777666543     444455554443333333333333333322   122221          1222222


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ...+-.+   +  .+...+...+......|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++++.-++
T Consensus        76 i~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            2222211   1  133344555666667777777777777776533 566666677777777778777777777777777


Q ss_pred             CCc
Q 010830          461 RIL  463 (499)
Q Consensus       461 ~~~  463 (499)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.58  E-value=0.044  Score=42.27  Aligned_cols=100  Identities=9%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      |..++.++|.++++.|+++....+++..-  |+..+...         .. +.        -.-.....|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~-~~--------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KE-GD--------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------cc-Cc--------cCCCCCCCCCHHHHHHHHH
Confidence            34567777777777777777777775543  22222100         00 00        0001245688889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR  266 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~  266 (499)
                      +|+..|++..|.++.+.+.+.+++.- +...|..|++-...
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i-~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPI-PKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence            99999999999999999888888666 46678777765433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.58  E-value=0.033  Score=48.13  Aligned_cols=105  Identities=9%  Similarity=0.025  Sum_probs=58.0

Q ss_pred             CCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHH
Q 010830          359 PDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS  433 (499)
Q Consensus       359 p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  433 (499)
                      -|..+|-..+..+...     +.++-....++.|.+.|+.-|..+|+.|++.+-+..                +.|.. +
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-v  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-V  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-H
Confidence            3556666666665433     344545555666666677777777777766654421                11111 1


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          434 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       434 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      +....-.|-+  +-+=++.++++|...|+.||..+-..|+++|.+.+..
T Consensus       128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            1111111211  1123566777777777777777777777777776655

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.55  E-value=0.22  Score=37.92  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=26.3

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830          293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG  356 (499)
Q Consensus       293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  356 (499)
                      ...++.+.+.|+-++-.+++..+.+.+   .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            334444445555555555555544322   3444444445555555555555555555554444

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.54  E-value=0.67  Score=43.04  Aligned_cols=78  Identities=13%  Similarity=0.020  Sum_probs=40.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCC-CCchHHhHHHHHHHHhc---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALD  297 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  297 (499)
                      .++-.|-...+++...++++.+..-... .++....-....-++.+   .|+.++|++++..+....-.++..+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4444566666677777777666442111 11122222233344444   5677777777766544444555666655554


Q ss_pred             HH
Q 010830          298 IL  299 (499)
Q Consensus       298 ~~  299 (499)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            44

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.53  E-value=0.69  Score=43.16  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=63.9

Q ss_pred             CHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010830           80 TPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY  157 (499)
Q Consensus        80 ~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  157 (499)
                      +...+-.++.  ...+..+...+.++.+.+.++.=..+|...+++-...+++.....+|.+..... .+...|...+..-
T Consensus        41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YI  119 (660)
T COG5107          41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYI  119 (660)
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHH
Confidence            4555666666  457788889999999988778788899999999999999999999999988764 4577777777765


Q ss_pred             HhcC
Q 010830          158 CGAG  161 (499)
Q Consensus       158 ~~~g  161 (499)
                      .+..
T Consensus       120 Rr~n  123 (660)
T COG5107         120 RRVN  123 (660)
T ss_pred             HhhC
Confidence            5544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.52  E-value=0.017  Score=39.76  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=35.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      ..|.+.+++++|.++++.+..   +.|++...|.....++.+.|++++|.+.|+...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            345566666666666666643   356566666666666666666666666666665543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.37  Score=42.47  Aligned_cols=148  Identities=11%  Similarity=0.069  Sum_probs=80.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 010830          118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN  197 (499)
Q Consensus       118 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  197 (499)
                      .-.......|++.+|..+|........-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+. .
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a  217 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-A  217 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-h
Confidence            334456777888888888888888776667777788888888888888888888775431111111111122222222 2


Q ss_pred             chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830          198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK  268 (499)
Q Consensus       198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~  268 (499)
                      ...+...+-..... .+.|...-..+...+...|+.+.|.+.+-.+.++ ...-.|...-..++..+.-.|
T Consensus       218 ~~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~-d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         218 ATPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRR-DRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             cCCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccccCcHHHHHHHHHHHhcC
Confidence            22222222222221 1224555555666666666666666555555443 222223334444554444444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.46  E-value=0.43  Score=39.91  Aligned_cols=182  Identities=13%  Similarity=0.000  Sum_probs=92.9

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      |-+..|+--|.......+.-+..||.+.--+...|+++.|.+.|+...+.++-...+...-.-++--.|++.-|.+-|..
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~  158 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA  158 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence            33444555555444444555678888888888888888888888888887754443333333334446788888777766


Q ss_pred             HHhCC-CCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       173 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .-+.. -.|-...|--+..   .. -+..+|..-+.+--++...+.+-|+.+--.+.+. ..+   .+++++..- .-+-
T Consensus       159 fYQ~D~~DPfR~LWLYl~E---~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki-S~e---~l~~~~~a~-a~~n  229 (297)
T COG4785         159 FYQDDPNDPFRSLWLYLNE---QK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI-SEE---TLMERLKAD-ATDN  229 (297)
T ss_pred             HHhcCCCChHHHHHHHHHH---hh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc-cHH---HHHHHHHhh-ccch
Confidence            64432 2232333333322   12 4555555544433333222233333222211111 111   222222211 0000


Q ss_pred             -----chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          252 -----EHVLAYETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       252 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                           -=..||-.+..-+...|+.++|..+|+-....
T Consensus       230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence                 01235666667777777777777777655543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.40  E-value=0.12  Score=48.54  Aligned_cols=68  Identities=7%  Similarity=-0.153  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      .+.+...|+.+..+|.+.|++++|+..|++..+.++.+.   .+|..+..+|...|++++|++.+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566788999999999999999999999999999887665   45999999999999999999999998864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.37  E-value=0.32  Score=47.37  Aligned_cols=53  Identities=13%  Similarity=0.130  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      ..+...+...+.+...+-.|-++|..|-.           ...+++.....++|.+|+.+-+..
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~h  799 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKH  799 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhC
Confidence            33444444444455555556666655521           123445555566666666555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=1.3  Score=44.19  Aligned_cols=322  Identities=11%  Similarity=0.111  Sum_probs=174.5

Q ss_pred             CCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCC
Q 010830          108 GQRLSPYAWN-----LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSFDVMSMHGVE  179 (499)
Q Consensus       108 ~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~  179 (499)
                      |.+.+..-|.     .+|+-+...+.+..|+++-..+..........|......+.+..+   -+.+..+=+++.. .. 
T Consensus       427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-  504 (829)
T KOG2280|consen  427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-  504 (829)
T ss_pred             CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-
Confidence            5555555443     456667777788888877766654443335566777777776642   2222222222221 12 


Q ss_pred             cCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-------
Q 010830          180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKK---I--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-------  247 (499)
Q Consensus       180 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------  247 (499)
                      ....+|..+.+..... |+.+.|..+++.-..   .  .-.+..-+...+.-+.+.|+.+-...++.++..+.       
T Consensus       505 ~~~iSy~~iA~~Ay~~-GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~  583 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQE-GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM  583 (829)
T ss_pred             CCceeHHHHHHHHHhc-CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            3334555555555556 888888887765322   0  11233345556666777788777777777665531       


Q ss_pred             --CCCCchHHhHHHHHH--------HHhcCCCHHHHHHHHH--HHh----hCCCCCCHhhHHHHHHHHHHcCCHhHH---
Q 010830          248 --EWNPEHVLAYETFLI--------TLIRGKQVDEALKFLR--VMK----GENCFPTLKFFSNALDILVKLNDSTHA---  308 (499)
Q Consensus       248 --~~~p~~~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~~~~~~a---  308 (499)
                        ...|.....|.-+++        .+...++-.++..-|.  ...    ..|..|+   .....+++.+.....-.   
T Consensus       584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka  660 (829)
T KOG2280|consen  584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKA  660 (829)
T ss_pred             HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHH
Confidence              111211112222221        0111112122222111  100    0122222   22334444444331111   


Q ss_pred             -------HHHHHHHHhc-CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830          309 -------VQLWDIMVGI-GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV  380 (499)
Q Consensus       309 -------~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  380 (499)
                             .++.+.+..+ |  ..-...+.+--+.-+...|+..+|.++-.+.+    -||...|..-+.+++..+++++-
T Consensus       661 ~ed~~kLl~lQ~~Le~q~~--~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL  734 (829)
T KOG2280|consen  661 LEDQMKLLKLQRTLEDQFG--GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL  734 (829)
T ss_pred             HHHHHHHHHHHHHHHHHhc--cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence                   1111222211 1  11222344455566677788888887766664    37888899899999999998876


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830          381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE  456 (499)
Q Consensus       381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  456 (499)
                      +++-+.+.      ++.-|.-++.+|.+.|+.++|.+++-+...     .    .-...+|.+.|++.+|.++--+
T Consensus       735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence            66554432      245677888999999999999988875422     1    1467788899999888776543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.29  E-value=0.4  Score=46.80  Aligned_cols=142  Identities=13%  Similarity=0.041  Sum_probs=75.3

Q ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCH------HHHHHHHHHHHh----cCChhHHH
Q 010830           99 VDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSL------PTFASIFDSYCG----AGKYDEAV  167 (499)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~------~~~~~li~~~~~----~g~~~~A~  167 (499)
                      .-+|+.+....||   ....+++..+=.||-+.+++.+.+..+.+ +-.+      -.|..++..++.    ....+.|.
T Consensus       177 ~G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~  253 (468)
T PF10300_consen  177 FGLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE  253 (468)
T ss_pred             HHHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence            3445555444444   44566667777788888888877766544 2221      234444444433    33566677


Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc---c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      ++++.+.+.  .|+...|...-.-+.+..|+.++|.+.|+....   . .+.....+--+.-.+.-.+++++|.+.|..+
T Consensus       254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            777777655  566666655554444444667777766665321   0 0111222333333344445555555555555


Q ss_pred             hH
Q 010830          244 VE  245 (499)
Q Consensus       244 ~~  245 (499)
                      .+
T Consensus       332 ~~  333 (468)
T PF10300_consen  332 LK  333 (468)
T ss_pred             Hh
Confidence            44

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.25  E-value=0.12  Score=48.62  Aligned_cols=66  Identities=20%  Similarity=0.147  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH---HhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      .+...++.+..+|.+.|++++|...|++..+   +.|++.   .+|..+..+|.+.|+.++|++.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456666666677777777777777766643   355444   23666777777777777777777666654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.22  E-value=1  Score=41.85  Aligned_cols=97  Identities=16%  Similarity=0.208  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHc---cCCchHHHHHHHHH-HhccCCCCHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG---VEQDVVAVNSLLSAICR---QENQTSRALEFLNR-VKKIVDPDGD  218 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~-~~~~~~~~~~  218 (499)
                      +..+...++-.|....+++...++.+.|....   +.-....--...-++-+   . |+.++|+.++.. +.+...++..
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhccCCCChH
Confidence            44444455555666666666666666665431   00011111111112222   3 666666666655 4444455555


Q ss_pred             HHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 010830          219 SFAILLEGWEK---------EGNVEEANKTFGEM  243 (499)
Q Consensus       219 ~~~~ll~~~~~---------~g~~~~a~~~~~~~  243 (499)
                      +|..+...|-.         ....++|...|.+-
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg  252 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG  252 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence            66555554421         11245555555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.21  E-value=0.39  Score=46.88  Aligned_cols=161  Identities=13%  Similarity=0.046  Sum_probs=82.7

Q ss_pred             HHHHHHHccCCchHHHHHHHHHHhcc--CCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHhHccCCCCchHH
Q 010830          187 SLLSAICRQENQTSRALEFLNRVKKI--VDPD-----GDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEHVL  255 (499)
Q Consensus       187 ~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~-----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~  255 (499)
                      .++....-. ||-+.+++.+.+..+.  +.-.     .-.|...+..++.    ..+.+.|.++++.+.++   -|+...
T Consensus       193 kll~~vGF~-gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l  268 (468)
T PF10300_consen  193 KLLSFVGFS-GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL  268 (468)
T ss_pred             HHHhhcCcC-CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence            334444444 5555555555554331  1111     1233344433332    34566777777777655   553333


Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CC--CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGEN-CF--PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV  332 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  332 (499)
                      -.-.-.+.+...|++++|++.|++..... -.  .....+--+.-++.-..++++|.+.|..+.+..   .-+..+|.-+
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y~  345 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHHH
Confidence            22333455566677777777777544311 11  112233345555666777777777777777654   2233333333


Q ss_pred             HHH-HHcCCCh-------HHHHHHHHHHHH
Q 010830          333 IGL-LCNNDDV-------DNVFRFFDQMVF  354 (499)
Q Consensus       333 i~~-~~~~~~~-------~~a~~~~~~m~~  354 (499)
                      ..+ +...++.       ++|.++|.+...
T Consensus       346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  346 AAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            322 2344555       777777776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.16  E-value=0.76  Score=39.77  Aligned_cols=183  Identities=11%  Similarity=0.073  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLS  190 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~  190 (499)
                      .|+.-+ .-.+.|++++|.+.|+.+....+-   ...+.-.++.++-+.++++.|+..+++..+. +-.||. .|..-|.
T Consensus        37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk  114 (254)
T COG4105          37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK  114 (254)
T ss_pred             HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence            444433 346778888888888888877643   3456666777788888888888888887655 333333 3444444


Q ss_pred             HHHcc------CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830          191 AICRQ------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL  264 (499)
Q Consensus       191 ~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~  264 (499)
                      +++.-      ..|...+..-+..++.           ++.-|=...-...|......+...      =...=-.+.+.|
T Consensus       115 gLs~~~~i~~~~rDq~~~~~A~~~f~~-----------~i~ryPnS~Ya~dA~~~i~~~~d~------LA~~Em~IaryY  177 (254)
T COG4105         115 GLSYFFQIDDVTRDQSAARAAFAAFKE-----------LVQRYPNSRYAPDAKARIVKLNDA------LAGHEMAIARYY  177 (254)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHH-----------HHHHCCCCcchhhHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            44321      1344444444444432           111111111112222222222111      000112345666


Q ss_pred             hcCCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          265 IRGKQVDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       265 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .+.|.+..|..-+++|.+. .+-+   ...+-.+..+|...|-.++|.+.-+-+..
T Consensus       178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            7777777777777777664 2222   23344456677777777777666555544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=1.7  Score=43.37  Aligned_cols=303  Identities=12%  Similarity=0.091  Sum_probs=177.8

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh--HHHH-HHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF--EQMW-NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~-~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      +.+.+..|.++-.|+.....-+...|......+.+..+.  +++. .+-+++... .....+|..+.+.....|+.+-|.
T Consensus       449 ~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~  527 (829)
T KOG2280|consen  449 DRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELAR  527 (829)
T ss_pred             hcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHH
Confidence            356788899999888553333356777777777766322  2333 333333332 344567888999899999999999


Q ss_pred             HHHHHHHhCCCC----cCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc------------CCCCHHHHHHHHHH-----
Q 010830          168 MSFDVMSMHGVE----QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------------VDPDGDSFAILLEG-----  226 (499)
Q Consensus       168 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~ll~~-----  226 (499)
                      .+++.=...+..    -+..-+...+.-+... |+.+....++-.++..            .+.....|.-+++-     
T Consensus       528 kLle~E~~~~~qV~lLL~m~~~~~AL~kaies-~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~  606 (829)
T KOG2280|consen  528 KLLELEPRSGEQVPLLLKMKDSSLALKKAIES-GDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRAT  606 (829)
T ss_pred             HHHhcCCCccchhHHHhccchHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhh
Confidence            988753322211    1233445556666666 7777777766655431            12222233333221     


Q ss_pred             ---HHhcCCHHHHHHHH--HHHhH---ccCCCCchHHhHHHHHHHHhcCCCH----------HHHHHHHHHHhh-CCCCC
Q 010830          227 ---WEKEGNVEEANKTF--GEMVE---RFEWNPEHVLAYETFLITLIRGKQV----------DEALKFLRVMKG-ENCFP  287 (499)
Q Consensus       227 ---~~~~g~~~~a~~~~--~~~~~---~~~~~p~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~-~~~~p  287 (499)
                         +...++-..+...|  +....   ..+..|    ......+.+.+....          .+-+++.+.+.. .|...
T Consensus       607 l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~----~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f  682 (829)
T KOG2280|consen  607 LYDFYNQDDNHQALASFHLQASYAAETIEGRIP----ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF  682 (829)
T ss_pred             hhhhhhcccchhhhhhhhhhhhhhhhhhcccch----hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence               11122222222111  11000   012223    233344444444331          122222333332 23334


Q ss_pred             CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHH
Q 010830          288 TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMI  367 (499)
Q Consensus       288 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  367 (499)
                      ..-+.+--+.-+...|+..+|.++-.+.+      -||-..|-.=+.+++..+++++-+++-+.++      .+.-|.-.
T Consensus       683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk------ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF  750 (829)
T KOG2280|consen  683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK------IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF  750 (829)
T ss_pred             ccCcHHHHHHHHHHccchHHHHHHHHhcC------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence            44556666777888999999998877664      4788888888999999999988776655443      35667888


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830          368 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN  420 (499)
Q Consensus       368 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  420 (499)
                      +.+|.+.|+.++|.+++.+.-.         +.-...+|.+.|++.+|.++--
T Consensus       751 Ve~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  751 VEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999999999866521         1156788889999988877643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.11  E-value=0.81  Score=39.59  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .+.|++++|.+.|+.+..++...|-...+.-.++.++-+.+++++|+..+++...
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3567777777777777666555554445555666666677777777777666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.10  E-value=0.28  Score=47.16  Aligned_cols=105  Identities=21%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ....+.+++-+-+.|..+.|+++-..-..           -.....+.|+++.|.++.++.      .+...|..|-...
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A  357 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence            33455555555555555555555322221           133344445555555443221      2344555555555


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      .+. |+++.|++.|.+.+.        |..|+-.|.-.|+.+...++.+..
T Consensus       358 L~~-g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  358 LRQ-GNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHT-TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHc-CCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            555 555555555554432        334444444455554444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.05  E-value=0.55  Score=37.21  Aligned_cols=43  Identities=9%  Similarity=0.096  Sum_probs=20.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Q 010830          118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA  160 (499)
Q Consensus       118 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  160 (499)
                      .++..+...+........++.+...+..+...++.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            3444444444555555555555444444444555555555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.04  E-value=0.026  Score=39.44  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCC-CCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVER---FEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      .+++.+...|...|++++|++.|++..+.   .|- .|....+++.+..++...|++++|++.+++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556666666666666666666655432   111 1112345555666666666666666666554

...

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.00  E-value=1.1  Score=40.34  Aligned_cols=102  Identities=6%  Similarity=0.068  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHcCCHh---HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830          290 KFFSNALDILVKLNDST---HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM  366 (499)
Q Consensus       290 ~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  366 (499)
                      .++..++.+|...+..+   +|..+++.+....   +-...++-.-+..+.+.++.+.+.+++.+|... +.-....+..
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~  160 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDS  160 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHH
Confidence            35556677777666544   4555555554432   223445545566666678888888888888875 2213344555


Q ss_pred             HHHHH---HhcCCHhHHHHHHHHHHHCCCCCCh
Q 010830          367 IFECL---IKNKRVHEVEKFFHEMIKNEWQPTP  396 (499)
Q Consensus       367 ll~~~---~~~g~~~~a~~~~~~~~~~~~~p~~  396 (499)
                      ++..+   ... ....|...+..++...+.|..
T Consensus       161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence            44444   332 334566666666655445544

It is also involved in sporulation [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.94  E-value=2.8  Score=44.33  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=67.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh--hHHHHHHHH
Q 010830          329 YNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITML  406 (499)
Q Consensus       329 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~  406 (499)
                      |.+....+...+.+++|--.|+..-+         ..-.+.+|...|+|.+|..+..++...   -+..  +-..|+.-+
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence            34444444556677777666655433         233566778888888888887776432   1221  224566677


Q ss_pred             hccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          407 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       407 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      ...++.-+|-++..+....        ....+..||+...|++|.++...-.
T Consensus      1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence            7778888888877766541        1223455677777888877765443

>PRK15331 chaperone protein SicA; Provisional

Probab=95.87  E-value=0.052  Score=43.39  Aligned_cols=85  Identities=13%  Similarity=-0.027  Sum_probs=61.5

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|++++|..+|..+..-.+.|..-|..|...+-..+++++|+..|...-..++.|+..+-....+|...|+.+.|...|
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f  128 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF  128 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence            35777888888877766566666667777777777778888888777776666555556666777777778888888777


Q ss_pred             HHHHh
Q 010830          171 DVMSM  175 (499)
Q Consensus       171 ~~m~~  175 (499)
                      +....
T Consensus       129 ~~a~~  133 (165)
T PRK15331        129 ELVNE  133 (165)
T ss_pred             HHHHh
Confidence            77665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.85  E-value=0.024  Score=39.63  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=37.6

Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FPT-LKFFSNALDILVKLNDSTHAVQLWDIMV  316 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~  316 (499)
                      ...+|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+..++...|++++|++.+++..
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456777778888888888888887765532    10 011 3344555555666666666666665544

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.79  E-value=0.4  Score=46.16  Aligned_cols=78  Identities=17%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      .-.+.++..+-+.|..+.|+++-.+-.            .-.....+. |+++.|.++.++.     .+...|..|.+..
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l-g~L~~A~~~a~~~-----~~~~~W~~Lg~~A  357 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL-GNLDIALEIAKEL-----DDPEKWKQLGDEA  357 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC-T-HHHHHHHCCCC-----STHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc-CCHHHHHHHHHhc-----CcHHHHHHHHHHH
Confidence            335555555555555555555532221            112222333 5555554443222     2344555555555


Q ss_pred             HhcCCHHHHHHHHHHH
Q 010830          228 EKEGNVEEANKTFGEM  243 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~  243 (499)
                      .+.|+++-|++.|.+.
T Consensus       358 L~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  358 LRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHTTBHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHhh
Confidence            5555555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.75  E-value=0.099  Score=45.35  Aligned_cols=72  Identities=19%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----------------CCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830          231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----------------KQVDEALKFLRVMKGENCFPTLKFFSN  294 (499)
Q Consensus       231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~~~~p~~~~~~~  294 (499)
                      +.++-....++.|.+ +|+.- |..+|+.|++.+=+.                .+-+-+++++++|...|+.||..+-..
T Consensus        86 ~HveFIy~ALk~m~e-yGVer-Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~  163 (406)
T KOG3941|consen   86 THVEFIYTALKYMKE-YGVER-DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDI  163 (406)
T ss_pred             chHHHHHHHHHHHHH-hcchh-hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHH
Confidence            344444444555544 45555 555555555554443                234557888888988899999888888


Q ss_pred             HHHHHHHcCC
Q 010830          295 ALDILVKLND  304 (499)
Q Consensus       295 li~~~~~~~~  304 (499)
                      +++++.+.+-
T Consensus       164 lvn~FGr~~~  173 (406)
T KOG3941|consen  164 LVNAFGRWNF  173 (406)
T ss_pred             HHHHhccccc
Confidence            8888877664

>PRK15331 chaperone protein SicA; Provisional

Probab=95.66  E-value=0.2  Score=40.08  Aligned_cols=21  Identities=5%  Similarity=-0.146  Sum_probs=8.7

Q ss_pred             HHHHHcCCChHHHHHHHHHHH
Q 010830          333 IGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       333 i~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ..+|...|+.+.|...|+...
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~  132 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVN  132 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHH
Confidence            333444444444444444433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.21  Score=45.85  Aligned_cols=138  Identities=14%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      ...|.+.|++..|...|++.+..            |. +.+. -+.++.... .      ..-..+++.+..+|.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~-~~~ee~~~~-~------~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRS-FDEEEQKKA-E------ALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH------------hh-cccc-CCHHHHHHH-H------HHHHHHhhHHHHHHHhhhhH
Confidence            34678888899888888876532            00 0000 111111111 1      12234455566666666666


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH-HHHHHHHcCCH-hHHHHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-ALDILVKLNDS-THAVQL  311 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~-~~a~~~  311 (499)
                      ..|++..+...   ...|+|+-....-..++...|+++.|+..|+++.+..  |+...... ++.+-.+.... +...++
T Consensus       274 ~~Ai~~c~kvL---e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~  348 (397)
T KOG0543|consen  274 KEAIESCNKVL---ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKM  348 (397)
T ss_pred             HHHHHHHHHHH---hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666663   3355566666666666666677777777766666543  44333333 33333333332 233556


Q ss_pred             HHHHHh
Q 010830          312 WDIMVG  317 (499)
Q Consensus       312 ~~~~~~  317 (499)
                      |..|..
T Consensus       349 y~~mF~  354 (397)
T KOG0543|consen  349 YANMFA  354 (397)
T ss_pred             HHHHhh
Confidence            666654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.55  E-value=0.33  Score=42.28  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830          184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF  260 (499)
Q Consensus       184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l  260 (499)
                      .|+.-+..+..  |++..|..-|....++.+.+   ...+.-|...+...|++++|..+|..+.+.++-.|.-+..+--|
T Consensus       144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            34444444332  44555555555544433222   22344455555566666666666655555544444333444445


Q ss_pred             HHHHhcCCCHHHHHHHHHHHhh
Q 010830          261 LITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       261 i~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ..+..+.|+.++|-..|+++.+
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            5555555555555555555444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.47  E-value=0.98  Score=35.77  Aligned_cols=126  Identities=10%  Similarity=0.114  Sum_probs=64.7

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 010830          330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA  409 (499)
Q Consensus       330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  409 (499)
                      ..++..+...+.......+++.+...+. .+....+.++..|++.+. .+..+.++.      ..+......+++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            3455555555566666666666665542 455566666666665432 223333321      12333344566666666


Q ss_pred             CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830          410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNL-GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       410 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  478 (499)
                      +.++++..++.++..         |...+..+... ++++.|.+++++-      -+...|..++..+..
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            666666666665421         12223333333 6666666666541      144566666655543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.40  E-value=0.063  Score=32.50  Aligned_cols=41  Identities=15%  Similarity=0.358  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL  261 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li  261 (499)
                      .++..+...|.+.|++++|.++|++..+.   .|+|...|..+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHhh
Confidence            35667788888888888888888888665   777776666554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.29  E-value=0.69  Score=36.21  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=34.6

Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      ..+.|++++|.+.|+.+..++...+-....--.++.+|.+.+++++|...+++..+..
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3455666666666666666544444344455556666666666666666666655543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.28  E-value=0.43  Score=41.60  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcC-HHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQD-VVAVNS  187 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~  187 (499)
                      ...|+.-++. .+.|++..|...|....+..+   -....+-.|...+...|++++|..+|..+.+. +-.|. ...+--
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4477777764 556678888888888888774   34556778888888888888888888888664 22222 244555


Q ss_pred             HHHHHHccCCchHHHHHHHHHHhccCCCCHHH
Q 010830          188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDS  219 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  219 (499)
                      |-....+. |+.++|..+|+++.+..+.+..+
T Consensus       221 lg~~~~~l-~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         221 LGVSLGRL-GNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHh-cCHHHHHHHHHHHHHHCCCCHHH
Confidence            55556666 88888888888887766555443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.27  E-value=3.2  Score=40.51  Aligned_cols=333  Identities=12%  Similarity=0.081  Sum_probs=189.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL  188 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  188 (499)
                      ...+...|+.+|.---+..+.+.+..+++.+...-+.--.-|......=.+.|..+.+.++|++-+. |++-+...|...
T Consensus        41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y  119 (577)
T KOG1258|consen   41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY  119 (577)
T ss_pred             chhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence            4445567777777666666677778888888776555555677777777788889999999988774 456677778777


Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI  265 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~  265 (499)
                      +.-+....|+.+.....|+..+..+.   .....|...+..-..++++.....+++++.+.      -...|+..-.-|.
T Consensus       120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei------P~~~~~~~f~~f~  193 (577)
T KOG1258|consen  120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI------PLHQLNRHFDRFK  193 (577)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh------hhhHhHHHHHHHH
Confidence            77777666888888888888776332   24456777777778888899999999988764      1223333322222


Q ss_pred             c---C------CCHHHHHHHHHHHhhC-C---CCCCHhhHHH-----------------HH--------HHHHHcCCHhH
Q 010830          266 R---G------KQVDEALKFLRVMKGE-N---CFPTLKFFSN-----------------AL--------DILVKLNDSTH  307 (499)
Q Consensus       266 ~---~------~~~~~a~~~~~~m~~~-~---~~p~~~~~~~-----------------li--------~~~~~~~~~~~  307 (499)
                      +   .      ...+++.++-...... .   ..........                 ++        .++-..-....
T Consensus       194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~  273 (577)
T KOG1258|consen  194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE  273 (577)
T ss_pred             HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence            2   1      2333333333222210 0   0000001100                 00        11111111222


Q ss_pred             HHHHHHHHHhcC-CCC----CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 010830          308 AVQLWDIMVGIG-FNL----MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK  382 (499)
Q Consensus       308 a~~~~~~~~~~~-~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~  382 (499)
                      ....++.-++.- +.+    .++..+|+..+.--.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..
T Consensus       274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~  352 (577)
T KOG1258|consen  274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN  352 (577)
T ss_pred             HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence            222222222211 111    225667888888888888888888888876541 11112334444444445588888887


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHh-ccCChhHHHHHHHHHHHCCCCChHHH-HHHHHHHHHhCCChHHHHH
Q 010830          383 FFHEMIKNEWQPTPLNCATAITMLL-DADEPEIAIEIWNYILENGILPLEAS-ANELLVGLRNLGRLSDVRR  452 (499)
Q Consensus       383 ~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~  452 (499)
                      ++....+--.+-.+ ....+-..+. ..|+.+.|..+++.+.+.-  |+... -..-+....+.|..+.+..
T Consensus       353 ~~~~~~~i~~k~~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  353 VLARACKIHVKKTP-IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHHhhhhhcCCCCc-HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence            77776664332222 2222222233 4578888888888887633  43322 1122334556677777663

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.23  E-value=5.1  Score=42.55  Aligned_cols=33  Identities=6%  Similarity=0.049  Sum_probs=22.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHh
Q 010830          108 GQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKE  141 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~  141 (499)
                      ...|+ .-.-.+|.+|++.+  .++.|+....+...
T Consensus       786 ~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  786 RRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            34455 44556778888887  77777777777664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.23  E-value=0.07  Score=32.30  Aligned_cols=39  Identities=10%  Similarity=0.120  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI  153 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l  153 (499)
                      +|..+...|.+.|++++|+++|++..+..+.+...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            455566666666666666666666666665555555444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=2.2  Score=37.83  Aligned_cols=162  Identities=16%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             hhHHHHHHhcCCCCCHHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 010830           66 DDIESALACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV  144 (499)
Q Consensus        66 ~~l~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  144 (499)
                      .++...+.+....+....+..... ...++...|...|+.+....+-+...--.+...|...|+++.|..++..+.....
T Consensus       120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            356677776666555555544444 4578899999999888776666678888899999999999999999999876653


Q ss_pred             C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCCchHHHHHHHHHH-hc-cCCCCHHHH
Q 010830          145 L-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRV-KK-IVDPDGDSF  220 (499)
Q Consensus       145 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~  220 (499)
                      . .......-|..+.+.....+...+-...-.   .| |...-..+-..+... |+.+.|.+.+-.+ ++ ...-|...-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~d~~~R  275 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLV-GRNEAALEHLLALLRRDRGFEDGEAR  275 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccccCcHHH
Confidence            2 222223345555555666655555555544   45 566666666777777 8888888776554 33 122233344


Q ss_pred             HHHHHHHHhcC
Q 010830          221 AILLEGWEKEG  231 (499)
Q Consensus       221 ~~ll~~~~~~g  231 (499)
                      ..++..+.--|
T Consensus       276 k~lle~f~~~g  286 (304)
T COG3118         276 KTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhcC
Confidence            44444444444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.00  E-value=2.1  Score=36.77  Aligned_cols=53  Identities=17%  Similarity=0.139  Sum_probs=23.1

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHH---CCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830          400 ATAITMLLDADEPEIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRF  453 (499)
Q Consensus       400 ~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  453 (499)
                      ...|-.+....++..|.+.++.-.+   ..-.-+..+...|+.+| ..||.+++.++
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV  249 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence            3334444444555555555554222   11122334445555544 33555554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.93  E-value=0.38  Score=42.60  Aligned_cols=78  Identities=13%  Similarity=0.202  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM-----HGVEQDVVAVNSL  188 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l  188 (499)
                      .++..++..+...|+++.+.+.++++...++-+...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+....
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            35566667777777777777777777777777777777777777777777777777776643     4666666665555


Q ss_pred             HHH
Q 010830          189 LSA  191 (499)
Q Consensus       189 l~~  191 (499)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            544

>PRK11906 transcriptional regulator; Provisional

Probab=94.92  E-value=3  Score=39.70  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830          232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITL  264 (499)
Q Consensus       232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~  264 (499)
                      ..+.|..+|.+......+.|+....|..+..++
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h  305 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH  305 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH
Confidence            355677788887644466776666666555444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.82  E-value=0.73  Score=46.45  Aligned_cols=281  Identities=12%  Similarity=0.128  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHH----hCC----------C---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDG----------V---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      ....+.++.+|...+++-.-.-+++...    ..+          +   ........-+....+..-++.|..+-+.-  
T Consensus       283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~--  360 (933)
T KOG2114|consen  283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ--  360 (933)
T ss_pred             ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence            3455667777777766544333333222    111          1   12234556666677777777777665433  


Q ss_pred             CCCCcCHHHHHHHHHH----HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          176 HGVEQDVVAVNSLLSA----ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       176 ~g~~p~~~~~~~ll~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                         ..|..+...++..    +.+. |++++|...|-+-..-+.|.     .++.-|.+...+.+-...++.+.++ |+. 
T Consensus       361 ---~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~-gla-  429 (933)
T KOG2114|consen  361 ---HLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKK-GLA-  429 (933)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHc-ccc-
Confidence               2333333333332    2334 77777777766554434443     2445556666666666777777665 554 


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA  331 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  331 (499)
                       +...-..|+.+|.+.++.++..++.+.-. .|..  ..-+...+..|.+.+-.++|.-+-.....       +......
T Consensus       430 -~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-------he~vl~i  498 (933)
T KOG2114|consen  430 -NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-------HEWVLDI  498 (933)
T ss_pred             -cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-------CHHHHHH
Confidence             33456677777777777777766665433 2322  11244566666666777766655444332       2233333


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH-----HH
Q 010830          332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT-----ML  406 (499)
Q Consensus       332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-----~~  406 (499)
                      +   +-..+++++|++.+..|.-...-+....|...+   . ....++...++-+......++........+.     ..
T Consensus       499 l---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~  571 (933)
T KOG2114|consen  499 L---LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIG  571 (933)
T ss_pred             H---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhee
Confidence            3   334567778877776653211111222222211   1 2344555555555544322232222222221     11


Q ss_pred             hccCChhHHHHHHHHHHH
Q 010830          407 LDADEPEIAIEIWNYILE  424 (499)
Q Consensus       407 ~~~g~~~~a~~~~~~m~~  424 (499)
                      .-.+++......++.|.+
T Consensus       572 if~~~~~~~~~Fl~~~~E  589 (933)
T KOG2114|consen  572 IFSQNYQILLNFLESMSE  589 (933)
T ss_pred             eeccCHHHHHHHHHHHHh
Confidence            234566666666665654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.81  E-value=0.94  Score=34.54  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHHc
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK---FFSNALDILVKL  302 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~  302 (499)
                      +.+..|+++.|++.|.+..   .+-|.....||.-..++.-.|+.++|++-+++..+..-.-+..   .|..-...|...
T Consensus        52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            4667889999999888874   4467777889999999988899999988888776632222222   233333456667


Q ss_pred             CCHhHHHHHHHHHHhcC
Q 010830          303 NDSTHAVQLWDIMVGIG  319 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~  319 (499)
                      |+.+.|..=|+..-+.|
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            77788877777777766

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.78  E-value=0.56  Score=43.22  Aligned_cols=138  Identities=14%  Similarity=0.088  Sum_probs=86.5

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS  200 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  200 (499)
                      ..|.+.|++..|..-|++....=.            |.+.-+.++.....        ..-..+++.+..++.+. +++.
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl-~~~~  274 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKL-KEYK  274 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhh-hhHH
Confidence            467788888888888877543210            00001111111111        12234555666666666 7777


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH-HHHHHH
Q 010830          201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRV  279 (499)
Q Consensus       201 ~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a-~~~~~~  279 (499)
                      .|++..++...-.++|.....--..+|...|+++.|+..|+++.+   +.|+|...-+.++..-.+.....+. .++|..
T Consensus       275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777666667777777777788888888888888888854   4777776666776666666554443 667777


Q ss_pred             Hhh
Q 010830          280 MKG  282 (499)
Q Consensus       280 m~~  282 (499)
                      |..
T Consensus       352 mF~  354 (397)
T KOG0543|consen  352 MFA  354 (397)
T ss_pred             Hhh
Confidence            754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=1.3  Score=39.71  Aligned_cols=154  Identities=13%  Similarity=0.049  Sum_probs=106.6

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHH----HHHHHHHccCC
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN----SLLSAICRQEN  197 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~  197 (499)
                      .+--.|++.+|-..++++.+..+.|..+++..=.+|.-.|+.+.-...++++... ..+|...|.    .+--++... |
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~-g  189 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC-G  189 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh-c
Confidence            3445678888888888888888878888888888888899888888888887643 123432222    222334455 8


Q ss_pred             chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch---HHhHHHHHHHHhcCCCHHHHH
Q 010830          198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEAL  274 (499)
Q Consensus       198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~  274 (499)
                      -+++|++.-++..+..+.|.....++...+-..|+..++.++..+-...  +.-.+   .+-|=...-.+...+.++.|+
T Consensus       190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            8888888888877767778888888888888888888888877665432  11101   112333445566668888888


Q ss_pred             HHHHH
Q 010830          275 KFLRV  279 (499)
Q Consensus       275 ~~~~~  279 (499)
                      ++|+.
T Consensus       268 eIyD~  272 (491)
T KOG2610|consen  268 EIYDR  272 (491)
T ss_pred             HHHHH
Confidence            88865

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.71  E-value=3.2  Score=37.65  Aligned_cols=129  Identities=16%  Similarity=0.304  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--c---CCchHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhcCCH
Q 010830          163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--Q---ENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~---~~~~~~a~~~~~~~~~~----~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      +++...+++.|.+.|+..+..+|-+.......  .   .....++..+|+.|++.    ..++..++..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            55667788888888888888777664443333  1   02345677788888772    23455555555544  33332


Q ss_pred             ----HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---HHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830          234 ----EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSN  294 (499)
Q Consensus       234 ----~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~  294 (499)
                          +.+++.|+.+.+. |+...|..-+.+-+-++.....   ..++.++++.+.+.|+++....|..
T Consensus       156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence                4556667777663 6666555444444444433322   3456666777777776666555543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.67  E-value=1.3  Score=34.66  Aligned_cols=77  Identities=12%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ  195 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  195 (499)
                      -.....+.|++++|.+.|+.+..+-+   -...+.-.|+.+|.+.+++++|...+++.++..-.--...|...+.+++..
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            34455778899999999999888774   344567788889999999999999999887763222234555566665544

>PRK11906 transcriptional regulator; Provisional

Probab=94.32  E-value=3  Score=39.63  Aligned_cols=79  Identities=11%  Similarity=0.012  Sum_probs=48.9

Q ss_pred             hHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830           97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      .|.++-+.+.+..+-|+.+...+..++.-.++++.|..+|++....++....+|......+.-.|+.++|.+.+++..+
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            3444444444556666666666666666666666666677666666665556666555556666666666666666443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.32  E-value=5.2  Score=38.36  Aligned_cols=58  Identities=17%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          367 IFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      +..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            444455666666666666666653211 1223445566666666666666666666543

The molecular function of this protein is uncertain.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.02  E-value=2.1  Score=32.75  Aligned_cols=88  Identities=18%  Similarity=0.075  Sum_probs=66.8

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCH---HHHHHHHHHHHhcCChhH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL---PTFASIFDSYCGAGKYDE  165 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~---~~~~~li~~~~~~g~~~~  165 (499)
                      .-.|+.+.|++.|.....-.+-+...||.-..++.-.|+.++|++=+++..+..- .+.   ..|..-...|...|+-+.
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~  133 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA  133 (175)
T ss_pred             HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence            4468888999999887777777888999999999999999999888887776542 222   244444556777888888


Q ss_pred             HHHHHHHHHhCC
Q 010830          166 AVMSFDVMSMHG  177 (499)
Q Consensus       166 A~~~~~~m~~~g  177 (499)
                      |..-|+..-+.|
T Consensus       134 AR~DFe~AA~LG  145 (175)
T KOG4555|consen  134 ARADFEAAAQLG  145 (175)
T ss_pred             HHHhHHHHHHhC
Confidence            888888877666

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.93  E-value=0.7  Score=40.98  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCCCCHhh
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKF  291 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~  291 (499)
                      ..++..++..+..+|+++.+...++++...   .|-+...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~  229 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL  229 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence            456677888888899999999999999654   676788899999999999999999999987755     577776665


Q ss_pred             HHHHHHH
Q 010830          292 FSNALDI  298 (499)
Q Consensus       292 ~~~li~~  298 (499)
                      .......
T Consensus       230 ~~~y~~~  236 (280)
T COG3629         230 RALYEEI  236 (280)
T ss_pred             HHHHHHH
Confidence            5544433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.86  E-value=3.8  Score=35.21  Aligned_cols=149  Identities=12%  Similarity=0.082  Sum_probs=75.3

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc---CCCCCCCHhHHHH
Q 010830          255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI---GFNLMPNLIMYNA  331 (499)
Q Consensus       255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~  331 (499)
                      ..|+-....|...|..+.|-..+++.-+.                .+..++++|+++|++...-   +.....-...+..
T Consensus        92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen   92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            34555555666666666555555443220                1223445555555543321   1000111234444


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---CCCChhhHHHHH
Q 010830          332 VIGLLCNNDDVDNVFRFFDQMVFH----GAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTPLNCATAI  403 (499)
Q Consensus       332 li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li  403 (499)
                      .-..+.+...+++|-..+.+-...    .--++. ..|...|-.+....++..|.++++.--+.+   -.-+..+...|+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            555666666666655444333211    011121 234555555666778888888888754431   122455677777


Q ss_pred             HHHhccCChhHHHHHHH
Q 010830          404 TMLLDADEPEIAIEIWN  420 (499)
Q Consensus       404 ~~~~~~g~~~~a~~~~~  420 (499)
                      .+| ..|+.+++.+++.
T Consensus       236 ~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHh-ccCCHHHHHHHHc
Confidence            776 4577777766543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=5.1  Score=36.17  Aligned_cols=161  Identities=12%  Similarity=-0.004  Sum_probs=115.5

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH--HHH--HHHHHHHHhcCChhHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL--PTF--ASIFDSYCGAGKYDEA  166 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~--~~li~~~~~~g~~~~A  166 (499)
                      ..|+..+|-..++.+...++.|..+++..=++|.-.|+.+.-...++++...=-++.  .+|  ....-++...|-+++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            356777777888888888999999999999999999999999999988876622222  223  3344456788999999


Q ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830          167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD----GDSFAILLEGWEKEGNVEEANKTFGE  242 (499)
Q Consensus       167 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~  242 (499)
                      ++.-++..+.+ +.|...-.++...+-.. +++.++.++..+-.....-.    ...|=...-.+...+.++.|+++|+.
T Consensus       195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQIN-RFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccCC-CcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            99999888765 56777778888888777 99999999887765422211    11122233445677999999999987


Q ss_pred             HhHccCCCCchH
Q 010830          243 MVERFEWNPEHV  254 (499)
Q Consensus       243 ~~~~~~~~p~~~  254 (499)
                      -.-+ ..+.+|.
T Consensus       273 ei~k-~l~k~Da  283 (491)
T KOG2610|consen  273 EIWK-RLEKDDA  283 (491)
T ss_pred             HHHH-Hhhccch
Confidence            5443 3344344

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.37  E-value=11  Score=38.71  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      +|.-|....+...-...++.+.+.|..+...-..|+.+|.+.++.++-.+..+.-. .|..  ..-....+..+.+. +-
T Consensus       403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~s-ny  478 (933)
T KOG2114|consen  403 VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKS-NY  478 (933)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHh-Ch
Confidence            34444555555555556666666666666666666777777776666555554433 2211  11122233333333 44


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      .++|.-+-.+..    .+......++.   ..|++++|.+.+..+
T Consensus       479 l~~a~~LA~k~~----~he~vl~ille---~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  479 LDEAELLATKFK----KHEWVLDILLE---DLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHHHhc----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence            444444433322    23444444333   456677777776665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.86  E-value=2.3  Score=35.25  Aligned_cols=59  Identities=12%  Similarity=0.079  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVM  173 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m  173 (499)
                      .+..+...|.+.|+.+.|++.|.++.+...   .-...+-.+|+.....+++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            444444555555555555555555444432   11223444444444445544444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.77  E-value=6.9  Score=35.81  Aligned_cols=130  Identities=8%  Similarity=0.002  Sum_probs=62.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhCCC-----CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-CCH-hHH--
Q 010830          259 TFLITLIRGKQVDEALKFLRVMKGENC-----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM-PNL-IMY--  329 (499)
Q Consensus       259 ~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-~~~--  329 (499)
                      ++..++...+.++++++.|+...+...     .....+|..+-..|....+.++|.-+.....+.-..+. .|. .-|  
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            344555555666666666665443211     11234566666666666666666555443332100011 111 111  


Q ss_pred             ---HHHHHHHHcCCChHHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          330 ---NAVIGLLCNNDDVDNVFRFFDQMVF----HGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       330 ---~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                         -.|.-++-..|+...|.+.-++..+    .|-++. ......+.+.|...|+.+.|+.-|+...
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence               2233344555666555555554432    332221 1233445556666777777666665543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.63  E-value=4.8  Score=32.76  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=16.2

Q ss_pred             HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH
Q 010830          276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTH  307 (499)
Q Consensus       276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~  307 (499)
                      +++.+.+.++.|+...+..+++.+.+.|+...
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            33444445555555555555555555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.39  E-value=8.1  Score=34.87  Aligned_cols=19  Identities=16%  Similarity=0.193  Sum_probs=13.5

Q ss_pred             HHHhcCCHhHHHHHHHHHH
Q 010830          370 CLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~  388 (499)
                      .+.+.+++++|.+.|+-..
T Consensus       255 ~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhhcCHHHHHHHHHHHH
Confidence            3556788888888887544

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.06  E-value=2.4  Score=35.13  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ..+..+...|++.|+.+.|.+.|.++.+. ...+. -...+-.+|+...-.+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45666777778888888888888877663 33332 123455667777777777777777665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.93  E-value=5.6  Score=31.96  Aligned_cols=54  Identities=19%  Similarity=0.139  Sum_probs=28.9

Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .+.++.+++..+++.+.   -+.|.....-..-...++..|+|.+|+.+|+++.+..
T Consensus        21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            34556666666666663   2345333333333444556666666666666655443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.81  E-value=5.4  Score=31.52  Aligned_cols=50  Identities=14%  Similarity=0.052  Sum_probs=31.7

Q ss_pred             hCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          125 KNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       125 ~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ..++++++..+++.|.-..+  +...+|.  ...+...|++++|.++|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence            36777777777777766554  2333333  33456677777777777777665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.75  E-value=7.7  Score=33.19  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             HHHHHHHHHccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          185 VNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      +......+... +.+..+...+.....  ........+......+...+++..+.+.+....
T Consensus        62 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (291)
T COG0457          62 LLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL  122 (291)
T ss_pred             HHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333333 444444444444332  222333344444444444445555555555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.72  E-value=17  Score=37.16  Aligned_cols=187  Identities=14%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             HHHHHHHHH-hCCCCcC--HHHHHHHHHHHHccCCchHHHHHHHHHHhccCC-CCH-----HHHHHHHHHHHhcCCHHHH
Q 010830          166 AVMSFDVMS-MHGVEQD--VVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDG-----DSFAILLEGWEKEGNVEEA  236 (499)
Q Consensus       166 A~~~~~~m~-~~g~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~ll~~~~~~g~~~~a  236 (499)
                      |++.++.+. +..+.|.  ..++-.+...+.....+++.|+..+++...... ++.     .+-..++..+.+.+... |
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a  118 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A  118 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence            455555555 3333332  334455566666555788888888876533111 211     12234566666666555 8


Q ss_pred             HHHHHHHhHccCCCCc--hHHhHHHH-HHHHhcCCCHHHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHH--cCCHhHH
Q 010830          237 NKTFGEMVERFEWNPE--HVLAYETF-LITLIRGKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVK--LNDSTHA  308 (499)
Q Consensus       237 ~~~~~~~~~~~~~~p~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~--~~~~~~a  308 (499)
                      .+.+++..+...-.+.  -...+..+ +..+...++...|++.++.+....   ..|-..++..++.+...  .+..+++
T Consensus       119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~  198 (608)
T PF10345_consen  119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV  198 (608)
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence            7777776554222111  12223333 233333478888888887766422   23334444455555443  3555666


Q ss_pred             HHHHHHHHhcCC-------CCCCCHhHHHHHHHHHH--cCCChHHHHHHHHHHH
Q 010830          309 VQLWDIMVGIGF-------NLMPNLIMYNAVIGLLC--NNDDVDNVFRFFDQMV  353 (499)
Q Consensus       309 ~~~~~~~~~~~~-------~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~  353 (499)
                      .+..+.+.....       ...|...+|..+++.++  ..|+++.+...++++.
T Consensus       199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            666666543220       02345667777766554  4566556655554443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.49  E-value=9.6  Score=33.82  Aligned_cols=42  Identities=7%  Similarity=-0.084  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830          130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus       130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      .+|+++|.-+.+.... ..+-+.++..+....+..+|...+..
T Consensus       150 ~KA~ELFayLv~hkgk-~v~~~~~ie~lwpe~D~kka~s~lhT  191 (361)
T COG3947         150 RKALELFAYLVEHKGK-EVTSWEAIEALWPEKDEKKASSLLHT  191 (361)
T ss_pred             hHHHHHHHHHHHhcCC-cccHhHHHHHHccccchhhHHHHHHH
Confidence            5677777777665421 12234456666666666666555543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.34  E-value=11  Score=34.25  Aligned_cols=25  Identities=12%  Similarity=0.320  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHH
Q 010830          343 DNVFRFFDQMVFHGAFPDSLTYNMI  367 (499)
Q Consensus       343 ~~a~~~~~~m~~~g~~p~~~~~~~l  367 (499)
                      .++.++++.+.+.|+++....|..+
T Consensus       199 ~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  199 ARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHcCCccccccccHH
Confidence            3555666666666666555555544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.33  E-value=6.9  Score=31.85  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=58.5

Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHC-
Q 010830          347 RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-  425 (499)
Q Consensus       347 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  425 (499)
                      +.++.+.+.|+.|+...+..+++.+.+.|++..    +..++..++-+|.......+-.+.  +....+.++--+|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence            344445555666666666666666666666443    233334444445444443332222  2223333333333321 


Q ss_pred             CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          426 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       426 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      +     ..+..++..+...|++-+|.++.+.....    +......++++..+.++.
T Consensus        89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~  136 (167)
T PF07035_consen   89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD  136 (167)
T ss_pred             h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH
Confidence            1     13445556666667766666666554221    122234455555555555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.28  E-value=0.28  Score=27.65  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=12.6

Q ss_pred             HhCCCCCHHHHHHHHHHHHhcCChhHH
Q 010830          140 KEDGVLSLPTFASIFDSYCGAGKYDEA  166 (499)
Q Consensus       140 ~~~~~~~~~~~~~li~~~~~~g~~~~A  166 (499)
                      .+.++.+..+|+.+...|...|++++|
T Consensus         6 ie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    6 IELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            333344444444444444444444444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.06  E-value=14  Score=35.59  Aligned_cols=81  Identities=11%  Similarity=-0.000  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHCC-CCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCc-cCHHHHHHHHH
Q 010830          397 LNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-IYEVTMHKLKK  474 (499)
Q Consensus       397 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~  474 (499)
                      .+-..+..++-+.|+.++|.+.+++|.+.. ..-+..+...|+.++...+.+.++..++.+--+.... .-...|+..+-
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            333456666778899999999999998633 2234457778999999999999999999987543221 22345666554


Q ss_pred             HHH
Q 010830          475 AFY  477 (499)
Q Consensus       475 ~~~  477 (499)
                      .+-
T Consensus       340 kaR  342 (539)
T PF04184_consen  340 KAR  342 (539)
T ss_pred             HHH
Confidence            433

The molecular function of this protein is uncertain.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.99  E-value=4  Score=29.72  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830          165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL  223 (499)
Q Consensus       165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  223 (499)
                      +..+-++.+....+.|+..+..+.+++|-+. +++..|.++|+.++....+....|..+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRv-ND~a~AVR~lE~iK~K~~~~~~~Y~~~   85 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRV-NDFALAVRILEGIKDKCGNKKEIYPYI   85 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHccChHHHHHHH
Confidence            4555555666666667777777777776666 777777777766665433333344433

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.96  E-value=0.59  Score=26.67  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      +|..|...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677788888888888888888854

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.85  E-value=13  Score=34.15  Aligned_cols=225  Identities=14%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             CchHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch----HHhHHHHHHHHhcCCC
Q 010830          197 NQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQ  269 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~  269 (499)
                      .+.++|+..+.+...   .......++..+..+.++.|.+++++..--.-.+- -..-+|    ...|..+.+++-+.-+
T Consensus        20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-a~~~~ds~~~~ea~lnlar~~e~l~~   98 (518)
T KOG1941|consen   20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-ARELEDSDFLLEAYLNLARSNEKLCE   98 (518)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666555432   11223345555666666666666655433222111 000001    1123333333333334


Q ss_pred             HHHHHHHHHHHhh-CCCCCC---HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC---CCCCHhHHHHHHHHHHcCCCh
Q 010830          270 VDEALKFLRVMKG-ENCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN---LMPNLIMYNAVIGLLCNNDDV  342 (499)
Q Consensus       270 ~~~a~~~~~~m~~-~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~  342 (499)
                      +.+++.+-..-.. .|..|.   .....++-.+....+.++++.+.|+...+-...   -.....+|-.|-..|.+..++
T Consensus        99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~  178 (518)
T KOG1941|consen   99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY  178 (518)
T ss_pred             hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence            4444443332222 122221   112223444455555566666666655432100   011234555666666666666


Q ss_pred             HHHHHHHHHHHH----CCCCCCHHhHH-----HHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHhc
Q 010830          343 DNVFRFFDQMVF----HGAFPDSLTYN-----MIFECLIKNKRVHEVEKFFHEMIK----NEWQP-TPLNCATAITMLLD  408 (499)
Q Consensus       343 ~~a~~~~~~m~~----~g~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~~~  408 (499)
                      ++|.-+..+..+    .++.--..-|.     .|..++...|+...|.+.-++..+    .|-.+ -......+.+.|-.
T Consensus       179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~  258 (518)
T KOG1941|consen  179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS  258 (518)
T ss_pred             hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence            666555444332    12111111122     222344455555555555554433    22111 11122334444555


Q ss_pred             cCChhHHHHHHHHH
Q 010830          409 ADEPEIAIEIWNYI  422 (499)
Q Consensus       409 ~g~~~~a~~~~~~m  422 (499)
                      .|+.|.|+.-|+..
T Consensus       259 ~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  259 RGDLERAFRRYEQA  272 (518)
T ss_pred             cccHhHHHHHHHHH
Confidence            56666555555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.77  E-value=7.5  Score=31.26  Aligned_cols=71  Identities=8%  Similarity=-0.128  Sum_probs=41.7

Q ss_pred             HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830          123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ  195 (499)
Q Consensus       123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  195 (499)
                      -.+.++.+.+..+++-+.-..+-....-..-...+...|++.+|..+|+++.+.  .|.......|+..|...
T Consensus        20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA   90 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence            345567777777777776665433333333334456677777777777777654  34444455555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.67  E-value=0.64  Score=26.52  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=11.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHH
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555555555555554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.30  E-value=8.7  Score=31.24  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHH--HHHHHcCC
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK-FFSNAL--DILVKLND  304 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~~~  304 (499)
                      .+.+..++|+.-|..+.+. |..---+..--.+.......|+...|...|+++-...-.|-.. -..-|=  -.+...|.
T Consensus        69 A~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            3455566666666666553 3322111122222334455566666666666665544333222 111111  12234555


Q ss_pred             HhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          305 STHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       305 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +++.....+-+...+  .+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus       148 y~dV~srvepLa~d~--n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDG--NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCC--ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            555555555444433  222233344555555566666666666666554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.15  E-value=13  Score=33.11  Aligned_cols=118  Identities=9%  Similarity=0.083  Sum_probs=73.0

Q ss_pred             CChhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHc-cCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830          161 GKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEA  236 (499)
Q Consensus       161 g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a  236 (499)
                      .-+.+|+++|+.... ..+--|..+...+++.... .+.....-.++.+-+..  +..++..+...++..+++.+++.+-
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            345566667664322 2345567777777777665 21222223333333333  3567777777888888888888888


Q ss_pred             HHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 010830          237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV  279 (499)
Q Consensus       237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~  279 (499)
                      .++++......+..- |...|..+|+...+.|+..-..++.++
T Consensus       222 ~~fW~~~~~~~~~~~-D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGN-DPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHHhcccCCCCC-CCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            888877755312222 566788888888888887776666543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.02  E-value=0.31  Score=27.45  Aligned_cols=32  Identities=16%  Similarity=0.200  Sum_probs=27.0

Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 010830          102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW  133 (499)
Q Consensus       102 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  133 (499)
                      |+.+.+..+-|..+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34445567889999999999999999999986

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.97  E-value=2.9  Score=30.04  Aligned_cols=61  Identities=20%  Similarity=0.166  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHH
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI  333 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li  333 (499)
                      .=++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+.   ..+...|..++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~---~~~~~~y~~~l   83 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC---GAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---cCchhhHHHHH
Confidence            33555566666677777888888888888888888888888888776432   22334555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.74  E-value=1.9  Score=38.45  Aligned_cols=100  Identities=13%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH
Q 010830          107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV  182 (499)
Q Consensus       107 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  182 (499)
                      +|.+....+-..++..-....+++.+...+-.++...    .++. +-.++++.+.+ -+.++++.++..=++.|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence            4566666666777776666778888887777776554    1221 22233333333 3456788888777888888888


Q ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830          183 VAVNSLLSAICRQENQTSRALEFLNRV  209 (499)
Q Consensus       183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~  209 (499)
                      .+++.+|+.+.+. +++.+|..+.-.|
T Consensus       136 f~~c~l~D~flk~-~n~~~aa~vvt~~  161 (418)
T KOG4570|consen  136 FTFCLLMDSFLKK-ENYKDAASVVTEV  161 (418)
T ss_pred             hhHHHHHHHHHhc-ccHHHHHHHHHHH
Confidence            8888888888888 7777777665554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=89.73  E-value=12  Score=31.82  Aligned_cols=74  Identities=14%  Similarity=-0.009  Sum_probs=46.3

Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      |.+.....+.-+.+||.|.-.+...|+++.|.+.|+...+..-.-+-...|.-|..|. . |++..|.+-+-+.-.
T Consensus        88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~-gR~~LAq~d~~~fYQ  161 (297)
T COG4785          88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-G-GRYKLAQDDLLAFYQ  161 (297)
T ss_pred             hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-c-CchHhhHHHHHHHHh
Confidence            3344444444566788888888999999999999998876542222233333333332 2 777777776665543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.63  E-value=6.1  Score=35.39  Aligned_cols=48  Identities=8%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830          376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                      +.++++.++..=+.-|+-||..+++.+++.+.+.+++..|..+.-.|.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            334444444444444555555555555555555555544444444333

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.48  E-value=2.7  Score=30.59  Aligned_cols=47  Identities=23%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       272 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +..+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44555566666677777777777777777777777777777777654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.44  E-value=8.7  Score=32.92  Aligned_cols=16  Identities=13%  Similarity=0.125  Sum_probs=7.9

Q ss_pred             CCCHHHHHHHHHHHhh
Q 010830          267 GKQVDEALKFLRVMKG  282 (499)
Q Consensus       267 ~~~~~~a~~~~~~m~~  282 (499)
                      .+++.+|+++|++.-.
T Consensus       167 leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445555555555443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.22  E-value=11  Score=30.74  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH-HHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV-AVN  186 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~  186 (499)
                      ..+...|..-++ +++.+..++|+.-|..+.+.|.-+-..  .--........|+...|...|+++-...-.|-.. -..
T Consensus        56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A  134 (221)
T COG4649          56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA  134 (221)
T ss_pred             ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence            344556666665 567788888888888888887533222  2223344567788888888888886653333322 111


Q ss_pred             HHHHH--HHccCCchHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch
Q 010830          187 SLLSA--ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH  253 (499)
Q Consensus       187 ~ll~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~  253 (499)
                      .|=.+  +... |.++....-.+-+.. +.+.....-..|.-+-.+.|++.+|.+.|..+... ...|.+
T Consensus       135 Rlraa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~aprn  202 (221)
T COG4649         135 RLRAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAPRN  202 (221)
T ss_pred             HHHHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCcHH
Confidence            11111  2334 666666666655543 23333444455666667778888888888877663 444533

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=89.04  E-value=13  Score=31.62  Aligned_cols=169  Identities=16%  Similarity=0.100  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL  296 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  296 (499)
                      ...+......+...+++..+...+...... ...+.....+......+...+.+..+.+.+.........+. .......
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  136 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLA  136 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHH
Confidence            456666667777777777777777766431 12333455666666667777777777777777665443321 1111122


Q ss_pred             H-HHHHcCCHhHHHHHHHHHHhcCCCC--CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 010830          297 D-ILVKLNDSTHAVQLWDIMVGIGFNL--MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK  373 (499)
Q Consensus       297 ~-~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  373 (499)
                      . .+...|+.+.+...+.......  -  ......+......+...++.+.+...+..............+..+...+..
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK  214 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence            2 5666777777777777665421  0  012223333333344555666666666665553111023444455555555


Q ss_pred             cCCHhHHHHHHHHHHH
Q 010830          374 NKRVHEVEKFFHEMIK  389 (499)
Q Consensus       374 ~g~~~~a~~~~~~~~~  389 (499)
                      .++.+.+...+.....
T Consensus       215 ~~~~~~a~~~~~~~~~  230 (291)
T COG0457         215 LGKYEEALEYYEKALE  230 (291)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            5555555555555544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=30  Score=35.36  Aligned_cols=102  Identities=14%  Similarity=0.097  Sum_probs=60.3

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN  197 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  197 (499)
                      |+.+.+.+.+++|++..+.....-.  .....+...|..+...|++++|-...-.|.    .-+..-|.--+..++.. +
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~-~  437 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL-D  437 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc-c
Confidence            4556778888888877665544332  134578888888999999999988888886    23344444444444443 3


Q ss_pred             chHHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 010830          198 QTSRALEFLNRVKKIVD-PDGDSFAILLEGWEK  229 (499)
Q Consensus       198 ~~~~a~~~~~~~~~~~~-~~~~~~~~ll~~~~~  229 (499)
                      +....   +.-+..+.+ .+..+|..++..+..
T Consensus       438 ~l~~I---a~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  438 QLTDI---APYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             ccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence            22221   111222211 345667777766665

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.72  E-value=29  Score=35.03  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             HhCCChHHHHHHHHHHHh-------CCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          124 GKNGRFEQMWNAVRVMKE-------DGVLSLPTFASIFDSYCGAG-----KYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      +...+++.|+..|+.+.+       .+  ......-+..+|.+..     +.+.|..+|....+.| .|+....-..+..
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~  336 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE  336 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            344566666666666655       22  2223444444454432     4455666666555554 3333332222222


Q ss_pred             HHccCCchHHHHHHHHHHhc
Q 010830          192 ICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ......+...|.++|...-+
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             cCCccccHHHHHHHHHHHHH
Confidence            11101344555555555443

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=88.39  E-value=23  Score=35.82  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRV  138 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~  138 (499)
                      +.-|+ .+..+.-.|.++.|.+++..
T Consensus       149 p~FW~-~v~~lvlrG~~~~a~~lL~~  173 (566)
T PF07575_consen  149 PDFWD-YVQRLVLRGLFDQARQLLRL  173 (566)
T ss_dssp             HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred             hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence            56776 67778888999999988843

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=5  Score=39.27  Aligned_cols=149  Identities=9%  Similarity=-0.006  Sum_probs=84.8

Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA  308 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a  308 (499)
                      -.|+++.|..++..+.+         ..-+.++..+-+.|-.++|+++-         +|...   -.....+.|+++.|
T Consensus       598 mrrd~~~a~~vLp~I~k---------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA  656 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK---------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA  656 (794)
T ss_pred             hhccccccccccccCch---------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence            34666666555544432         13445566666666666665432         22111   12233466777777


Q ss_pred             HHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          309 VQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      .++..+..        +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+-+....+-....
T Consensus       657 ~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~  719 (794)
T KOG0276|consen  657 FDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK  719 (794)
T ss_pred             HHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence            66655432        456677777777777888777777766554         4556666666676655555555555


Q ss_pred             HCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          389 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       389 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                      +.|. -     |.-.-+|...|+++++.+++.+
T Consensus       720 ~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  720 KQGK-N-----NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             hhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence            5552 1     2223345556777777776553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.20  E-value=11  Score=29.76  Aligned_cols=53  Identities=17%  Similarity=0.092  Sum_probs=32.2

Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      ..++.+++..+++.|.   -+.|.....-..-...+...|+|++|+.+|+++.+.+
T Consensus        22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            3667777777777773   3355443333333445566777777777777776654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.97  E-value=19  Score=32.12  Aligned_cols=137  Identities=9%  Similarity=0.152  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhc-C-CHhHHHHHHHHHHHC-CCCCChhhHHHHHHHHhccCChhHHH
Q 010830          341 DVDNVFRFFDQMVF-HGAFPDSLTYNMIFECLIKN-K-RVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDADEPEIAI  416 (499)
Q Consensus       341 ~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~  416 (499)
                      .+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+-+... +-.++..+...++..+++.+++.+-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            35566777763222 22445667777777776652 2 233333444444433 45677778888899999999999999


Q ss_pred             HHHHHHHHC-CCCChHHHHHHHHHHHHhCCChHHHHHHHHH-----HHHcCCccCHHHHHHHHHHHH
Q 010830          417 EIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEE-----MLNRRILIYEVTMHKLKKAFY  477 (499)
Q Consensus       417 ~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~~ll~~~~  477 (499)
                      ++|+..... +..-|...|..+|+.....|+..-..++..+     +++.|+..+...-..+-+.|.
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            998877754 5667888899999999999987766666553     124456666555555544443

>PRK09687 putative lyase; Provisional

Probab=87.59  E-value=21  Score=32.20  Aligned_cols=235  Identities=12%  Similarity=0.050  Sum_probs=133.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH----HHHHHHHHHHhhCCCCCCHh
Q 010830          215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTLK  290 (499)
Q Consensus       215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~  290 (499)
                      +|..+....+..+...|..+ +...+..+...    + |...-...+.++.+.|+.    +++...+..+....  ++..
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~-d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~  106 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----K-NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSAC  106 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----C-CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHH
Confidence            45555555566666665433 22223333221    1 444555556666666652    45666666653332  4555


Q ss_pred             hHHHHHHHHHHcCCH-----hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH
Q 010830          291 FFSNALDILVKLNDS-----THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN  365 (499)
Q Consensus       291 ~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  365 (499)
                      +-...+.++...+..     ..+...+.....     .++..+-...+.++.+.++ +.+...+-.+.+.   +|...-.
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~  177 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF-----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN  177 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh-----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence            555555555554321     222333333322     3466666677777877776 4566666666653   4555555


Q ss_pred             HHHHHHHhcC-CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhC
Q 010830          366 MIFECLIKNK-RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL  444 (499)
Q Consensus       366 ~ll~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  444 (499)
                      ..+.++.+.+ ....+...+..+..   .++..+-...+.++.+.|+. .+...+-...+.+.     .....+.++...
T Consensus       178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~i  248 (280)
T PRK09687        178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGEL  248 (280)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhc
Confidence            5555665543 23456666666664   34667777788888888874 45555555555432     234577888888


Q ss_pred             CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830          445 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       445 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  478 (499)
                      |+. +|...+.++.+.  .||..+-...+.+|.+
T Consensus       249 g~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        249 GDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR  279 (280)
T ss_pred             CCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence            885 688888888864  3577777776666643

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.37  E-value=10  Score=27.36  Aligned_cols=46  Identities=17%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ++.+-++.+....+.|+.....+.+++|-+. +++..|.++|+.++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRV-NDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            4444445555555555555555566665555 556666665555543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.98  E-value=30  Score=32.34  Aligned_cols=67  Identities=7%  Similarity=-0.005  Sum_probs=49.0

Q ss_pred             CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830          324 PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN  390 (499)
Q Consensus       324 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  390 (499)
                      ....+|..+...+.+.|.++.|...+..+...+...   +....-.-.+..-..|+..+|...++..++.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356678888899999999999999999888743221   2333344455566788889999998888873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.74  E-value=21  Score=35.27  Aligned_cols=132  Identities=8%  Similarity=0.054  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC  370 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  370 (499)
                      .-+.+...+.+.|-.++|+++           .+|..--   .....+.|+++.|.++..+..      +..-|..|.++
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~-----------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~  675 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALEL-----------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDA  675 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhc-----------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHH
Confidence            445566777777777777654           2232211   223456788998888776653      66789999999


Q ss_pred             HHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHH
Q 010830          371 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV  450 (499)
Q Consensus       371 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  450 (499)
                      ..+.|++..|.+.|.+..+         |..|+-.+...|+-+....+-....+.|.      .|.-..+|...|+++++
T Consensus       676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C  740 (794)
T KOG0276|consen  676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC  740 (794)
T ss_pred             HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence            9999999999999987654         45677777788888877777676666663      24445567788999999


Q ss_pred             HHHHHHH
Q 010830          451 RRFAEEM  457 (499)
Q Consensus       451 ~~~~~~m  457 (499)
                      .+++.+-
T Consensus       741 ~~lLi~t  747 (794)
T KOG0276|consen  741 LELLIST  747 (794)
T ss_pred             HHHHHhc
Confidence            8887654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.71  E-value=49  Score=34.54  Aligned_cols=224  Identities=12%  Similarity=0.080  Sum_probs=109.9

Q ss_pred             CchHHHHHHHHHHhccCCC-----CHH---HHHHHH-HHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDP-----DGD---SFAILL-EGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITL  264 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~-----~~~---~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~  264 (499)
                      .++++|..+.+++....++     ...   .++.+- ......|++++|.++.+......   ...+ .+..+..+..+.
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~  507 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAA  507 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHH
Confidence            7788888888877552222     111   222221 12234678888887777765531   1112 344566677777


Q ss_pred             hcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH-----HHHHHcCCHhHHH--HHHHHHHhcCCC-C---CCCHhHHHHHH
Q 010830          265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-----DILVKLNDSTHAV--QLWDIMVGIGFN-L---MPNLIMYNAVI  333 (499)
Q Consensus       265 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~~~~~~a~--~~~~~~~~~~~~-~---~~~~~~~~~li  333 (499)
                      .-.|++++|..+..+..+..-.-+...|....     ..+...|+...+.  ..|......... .   .+-..++..+.
T Consensus       508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll  587 (894)
T COG2909         508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL  587 (894)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence            77788888888887665543233333333222     2344556433332  233333222100 0   11233445555


Q ss_pred             HHHHcCC-ChHHHHHHHHHHHHCCCCCCHHhH--HHHHHHHHhcCCHhHHHHHHHHHHHCCCCC----ChhhHHHHH--H
Q 010830          334 GLLCNND-DVDNVFRFFDQMVFHGAFPDSLTY--NMIFECLIKNKRVHEVEKFFHEMIKNEWQP----TPLNCATAI--T  404 (499)
Q Consensus       334 ~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li--~  404 (499)
                      .++.+.. ...++..-++-.......|-...+  ..|+......|+.++|...++++......+    +..+-...+  .
T Consensus       588 ~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~  667 (894)
T COG2909         588 RAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLI  667 (894)
T ss_pred             HHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHH
Confidence            5555421 111222222222222222222222  256677778899999988888877642222    222212222  2


Q ss_pred             HHhccCChhHHHHHHHH
Q 010830          405 MLLDADEPEIAIEIWNY  421 (499)
Q Consensus       405 ~~~~~g~~~~a~~~~~~  421 (499)
                      .....|+.+.+.....+
T Consensus       668 lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         668 LWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhcccCCHHHHHHHHHh
Confidence            23355777777666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.40  E-value=2.2  Score=24.91  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMS  174 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~  174 (499)
                      .+++.|...|...|++++|.+++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456667777777777777777776654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.17  E-value=2.2  Score=23.61  Aligned_cols=17  Identities=6%  Similarity=0.233  Sum_probs=5.9

Q ss_pred             HHHhcCCHhHHHHHHHH
Q 010830          370 CLIKNKRVHEVEKFFHE  386 (499)
Q Consensus       370 ~~~~~g~~~~a~~~~~~  386 (499)
                      +|...|++++|+..|++
T Consensus        10 ~~~~~~~~~~A~~~~~~   26 (34)
T PF00515_consen   10 AYFQLGDYEEALEYYQR   26 (34)
T ss_dssp             HHHHTT-HHHHHHHHHH
T ss_pred             HHHHhCCchHHHHHHHH
Confidence            33333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.02  E-value=2.8  Score=25.25  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=15.4

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          437 LLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       437 ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      |..+|...|+.+.|.+++++....|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4556666666666666666666543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.91  E-value=9.5  Score=31.98  Aligned_cols=71  Identities=15%  Similarity=0.113  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830          164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEA  236 (499)
Q Consensus       164 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a  236 (499)
                      +.|.+.|-.+...+.--++...-.|..-|. . .+.+++..++....+    +..+|...+..|+..|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-K-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-c-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            445555555555543333333333333333 2 455555555544422    2244555555555555555555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.91  E-value=2.6  Score=23.35  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455555666666666666666665544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.66  E-value=48  Score=33.49  Aligned_cols=181  Identities=12%  Similarity=0.105  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHhcCChhHHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHccC--
Q 010830          129 FEQMWNAVRVMKEDGVLSLPTFASIFDS---YCGAGKYDEAVMSFDVMSM-------HGVEQDVVAVNSLLSAICRQE--  196 (499)
Q Consensus       129 ~~~a~~~~~~m~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~--  196 (499)
                      ...|.+.++...+.|.........++..   +....+.+.|..+|+...+       .|   +.....-+-.+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            4578888888888774333333333322   4456688888888888865       33   2223444444444420  


Q ss_pred             -C-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCC
Q 010830          197 -N-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQ  269 (499)
Q Consensus       197 -~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~  269 (499)
                       . +.+.|..++.+......|+....-..+..... ..+...|.+.|...... |..+    .+-.+..+|..    ..+
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~----A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL----AIYRLALCYELGLGVERN  379 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH----HHHHHHHHHHhCCCcCCC
Confidence             2 45556666666555434444433333332222 23456666666666553 4322    22222222222    245


Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG  319 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  319 (499)
                      ...|..++.+.-+.| .|...--...+..+.. ++.+.+.-.+..+.+.|
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            666666666666655 2221111222233333 55555555555555444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.53  E-value=2.7  Score=23.14  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      .|..+...+...|++++|++.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345555666666666666666665544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.37  E-value=8.7  Score=32.56  Aligned_cols=79  Identities=10%  Similarity=0.070  Sum_probs=50.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL  335 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~  335 (499)
                      |.+.-++.+.+.+..++++...++-.+.+ +.|..+-..+++.+|-.|++++|..-++..-+......+...+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            44556677777788888888777655554 23445555677888888888888777666555332233445566666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.31  E-value=2.7  Score=24.54  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      .+++.+...|...|++++|.+++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345556666666666666666665553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.52  E-value=17  Score=30.54  Aligned_cols=20  Identities=15%  Similarity=0.225  Sum_probs=8.0

Q ss_pred             CHhhHHHHHHHHHHcCCHhH
Q 010830          288 TLKFFSNALDILVKLNDSTH  307 (499)
Q Consensus       288 ~~~~~~~li~~~~~~~~~~~  307 (499)
                      |...+.+|.+.+.+.|+.+.
T Consensus       177 n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  177 NPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             CHHHHHHHHHHHHHhcchhh
Confidence            33344444444444443333

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.95  E-value=0.61  Score=37.13  Aligned_cols=53  Identities=11%  Similarity=0.212  Sum_probs=24.2

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830          296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD  350 (499)
Q Consensus       296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  350 (499)
                      +..+.+.+..+....+++.+...+  ...+....+.++..|++.+..++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            333444444444444455444433  23345555555555555554455544444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.92  E-value=0.68  Score=36.83  Aligned_cols=128  Identities=13%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830          332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE  411 (499)
Q Consensus       332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  411 (499)
                      +|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++.       .+..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            5666777788888888888888766566778888888888888777777777661       111233456666677777


Q ss_pred             hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc
Q 010830          412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR  481 (499)
Q Consensus       412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  481 (499)
                      ++++..++.++....-         .+..+...++++.|.+++.+.      .+...|..+++.|...++
T Consensus        86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence            7766666654432111         111123334455554333221      356777777777766554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.67  E-value=15  Score=30.17  Aligned_cols=65  Identities=15%  Similarity=0.178  Sum_probs=29.3

Q ss_pred             cCCCCchHHhHHHHHHHHhcCC----C-------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHH
Q 010830          247 FEWNPEHVLAYETFLITLIRGK----Q-------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM  315 (499)
Q Consensus       247 ~~~~p~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  315 (499)
                      ..+.|+...++..+..+|...+    +       +++|.+.|++..+.  .|+..+|+.-+....      +|-+++.++
T Consensus        62 L~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~  133 (186)
T PF06552_consen   62 LKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEI  133 (186)
T ss_dssp             HHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHH
Confidence            3456665566666666554442    2       33333333333332  356666665555442      244455555


Q ss_pred             HhcC
Q 010830          316 VGIG  319 (499)
Q Consensus       316 ~~~~  319 (499)
                      .+.+
T Consensus       134 ~~~~  137 (186)
T PF06552_consen  134 HKQG  137 (186)
T ss_dssp             HHSS
T ss_pred             HHHH
Confidence            4443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.63  E-value=11  Score=33.58  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      +++.....|..+|.+.+|.++.+...... +.+...+-.++..++.. |+--.+.+.++.+.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~-gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATL-GDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHh-ccchhhhhHHHHHHH
Confidence            46667778888888888888888877654 55677777888888888 777777777776643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.36  E-value=4.7  Score=22.10  Aligned_cols=30  Identities=17%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG  143 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  143 (499)
                      ..|..+...+.+.|++++|++.|++..+..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            467788899999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=80.74  E-value=26  Score=27.73  Aligned_cols=82  Identities=16%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG------VLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVN  186 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~  186 (499)
                      ...|.++.-....+++...+.+++.+..-.      ..+...|..++.+..+... --.+..+|+-|++.+.+.+...|.
T Consensus        40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~  119 (145)
T PF13762_consen   40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS  119 (145)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            345777777777788888877777774433      2455678888888866665 556677788887777788888888


Q ss_pred             HHHHHHHcc
Q 010830          187 SLLSAICRQ  195 (499)
Q Consensus       187 ~ll~~~~~~  195 (499)
                      .+|.++.+.
T Consensus       120 ~li~~~l~g  128 (145)
T PF13762_consen  120 CLIKAALRG  128 (145)
T ss_pred             HHHHHHHcC
Confidence            888887764

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.63  E-value=14  Score=31.39  Aligned_cols=57  Identities=12%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010830          117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM  173 (499)
Q Consensus       117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  173 (499)
                      +..++.+.+.+++.+|+...++-.+..+-+...-..+++.++-.|++++|..-++..
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            334455556666666666665555555555555566666666666666666555544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.53  E-value=82  Score=33.41  Aligned_cols=116  Identities=10%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHHcCCH--hHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGENC---FPTLKFFSNALDILVKLNDS--THAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      -|..|+..|...|..++|+++|.+..+..-   .--..-+.-+++-+.+.+..  +...+.-+...+..  -.-....+.
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~--p~~gi~Ift  583 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN--PEAGIQIFT  583 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC--chhheeeee
Confidence            478888889999999999999888776321   00111222244444444433  33333333333221  000000000


Q ss_pred             ------------HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 010830          331 ------------AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK  373 (499)
Q Consensus       331 ------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  373 (499)
                                  .-+-.|......+-+..+++.+....-.++....+.++.-|+.
T Consensus       584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                        1122345555666677777777665444555666666665543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.30  E-value=42  Score=29.86  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=22.6

Q ss_pred             HHHHHHHHhCCChHHHHHHHHH----HHHcCCccCHHHH
Q 010830          435 NELLVGLRNLGRLSDVRRFAEE----MLNRRILIYEVTM  469 (499)
Q Consensus       435 ~~ll~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~  469 (499)
                      .-++..+.+.|.+.+|..+...    +++.+-+|+..+.
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v  167 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV  167 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence            4467788899999998876554    4444445554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	499
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.1 bits (149), Expect = 2e-10
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG-FNLMP 324
               +D                  +         +  +    A  L  +  G      + 
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK-NKRVHEVEKF 383
            L MYNAV+           +      +   G  PD L+Y    +C+ + ++    +E+ 
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 438
             +M +   +   L  A  ++    A   +   ++         LP   + ++LL
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.1 bits (123), Expect = 3e-07
 Identities = 23/202 (11%), Positives = 65/202 (32%), Gaps = 8/202 (3%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD---FFRWAG 106
           +   ++   +L+   +  +E         P  + +  +LQ +    S  V+     + + 
Sbjct: 61  TRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQ 120

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGK 162
                                +     + + V         +L+L  + ++   +   G 
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA- 221
           + E V    ++   G+  D+++  + L  + RQ+         L ++ +        F  
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240

Query: 222 ILLEGWEKEGNVEEANKTFGEM 243
           +LL   ++   ++  +K     
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTF 262

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.0 bits (120), Expect = 8e-07
 Identities = 15/177 (8%), Positives = 45/177 (25%), Gaps = 4/177 (2%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVD 271
           +           +       +  A+        + +      +  Y   ++   R     
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIMVGIGFNLMPNLIMYN 330
           E +  L ++K     P L  ++ AL  + + +     ++   + M   G       +   
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK--LQALFTA 240

Query: 331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 387
            ++        +  V +           P  +  + +   +          K    +
Sbjct: 241 VLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 42.5 bits (98), Expect = 3e-04
 Identities = 37/347 (10%), Positives = 90/347 (25%), Gaps = 18/347 (5%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDS 219
           D         S   +      + +     C   +Q   A   L               D 
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKC-CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEAL-KFL 277
           +  ++ GW ++G  +E       + +     +     +Y   L  + R  Q    + + L
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL---SYAAALQCMGRQDQDAGTIERCL 224

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC 337
             M  E       F +  L    +        ++           +P  +  + ++  + 
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ--LPPPVNTSKLLRDVY 282

Query: 338 NNDDVDNVFRFFDQMVFHGAFPDS-LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 396
             D   +  +    +       +  L   +     + +     +     +  +   +   
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342

Query: 397 LNCATAITMLLDADEPEIAIEI----WNYILENGILPLEASANELLVGLRNLGRLSD-VR 451
                A+   L   +  +  E+    ++      +L        LL  L+ L    +   
Sbjct: 343 DQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFT 402

Query: 452 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 498
             A E+  R    + V   ++           R     L    +  +
Sbjct: 403 TLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPE 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 59/423 (13%), Positives = 114/423 (26%), Gaps = 151/423 (35%)

Query: 168 MSFDVMSMHGVEQDVVAVN---------------SLLSAICRQE-----------NQTSR 201
           M F+        +D+++V                   S + ++E           + T R
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 202 ALEFL-----NRVKKIV-DPDGDSFAILLEGWEKEGN---------VEEANKTFGEMVER 246
               L       V+K V +    ++  L+   + E           +E+ ++ + +  + 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQV 125

Query: 247 FE----WNPEHVLAYETFLITLIR------------GKQV--DEALKFLRVMKGENCFP- 287
           F        +  L     L+ L              GK     +     +V   +     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDF 182

Query: 288 -----TLKFFSNALDILVKLNDSTHAV-----QLWDIMVGIGFNL------MPNLIMY-- 329
                 LK  ++   +L  L    + +        D    I   +      +  L+    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 330 --NAVIGLLCNNDDVDN--VFRFFDQMVFHGAFPDSLTYNMIFEC--LI--KNKRVHEV- 380
             N ++ L     +V N   +  F+                   C  L+  + K+V +  
Sbjct: 243 YENCLLVL----LNVQNAKAWNAFN-----------------LSCKILLTTRFKQVTDFL 281

Query: 381 --EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI--LPLEA-SAN 435
                 H  + +                L  DE      +    L+     LP E  + N
Sbjct: 282 SAATTTHISLDHHSMT------------LTPDE---VKSLLLKYLDCRPQDLPREVLTTN 326

Query: 436 ELLVGLRNLGRLSDVRRFAE---EMLNRRILIYEVTMHKLK---KAFYN--ESRSMRDIF 487
              + +            AE   + L        V   KL    ++  N  E    R +F
Sbjct: 327 PRRLSI-----------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 488 DSL 490
           D L
Sbjct: 376 DRL 378

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 157 YCGAGKYDEAVMSFDVMSMHGVE---QDVVAVNSLLSAICRQENQ--TSRALEFLNRVKK 211
            CG  + + A + F+      +E   ++    + L  A  R +N   +  A++ L +  +
Sbjct: 148 KCGGNQNERAKVCFE----KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203

Query: 212 IVDPDGDSFA------ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           + +PD + +        L +  E+     E  K   E +E+    P       +      
Sbjct: 204 L-NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYR 258

Query: 266 RGKQVDEALKFLR 278
           R  + D+A++ L+
Sbjct: 259 RKDEPDKAIELLK 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	499
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.55
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.53
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.53
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.5
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.33
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.01
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.0
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.98
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.9
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.87
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.67
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.67
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.65
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.6
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.54
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.53
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.5
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.5
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.5
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.3
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.07
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.95
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.94
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.94
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.86
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.82
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.78
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.64
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.62
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.56
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.45
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.36
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.34
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.28
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.59
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.4
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.4
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.24
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.17
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.97
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.75
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.36
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.79
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.58
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.22
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.01
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.26
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.26
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.96
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.93
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.28
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.16
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.59
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.26
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.14
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.94
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.84
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.18
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	88.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.97
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.95
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.78
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.41
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	87.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.33
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.79
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	84.04
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	83.76
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.71
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	82.22

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-35  Score=296.75  Aligned_cols=403  Identities=10%  Similarity=0.005  Sum_probs=329.9

Q ss_pred             CCCCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-----------
Q 010830           77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------  143 (499)
Q Consensus        77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------  143 (499)
                      ..|+...+..+..  ...|++++|..+|+.+.. .+++..+++.++.+|.+.|++++|+++|+++....           
T Consensus       113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  191 (597)
T 2xpi_A          113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM  191 (597)
T ss_dssp             HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred             hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence            3455555554444  346788888888887643 46778888888888888888888888887432221           


Q ss_pred             -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH------------------------------
Q 010830          144 -----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL------------------------------  188 (499)
Q Consensus       144 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------------------------  188 (499)
                           ..+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+                              
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  270 (597)
T 2xpi_A          192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF  270 (597)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred             cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence                 1246788888888888888888888888887653 1123332222                              


Q ss_pred             --------HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830          189 --------LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF  260 (499)
Q Consensus       189 --------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l  260 (499)
                              +..|.+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.   .|++..+|+.+
T Consensus       271 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l  345 (597)
T 2xpi_A          271 LRSLYMLKLNKTSHE-DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI---DPYNLDVYPLH  345 (597)
T ss_dssp             HHHHHHTTSCTTTTH-HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCCTTHHHH
T ss_pred             HHHHHHHHHHHHcCc-chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc---CcccHHHHHHH
Confidence                    3445566 7888888888887654 578999999999999999999999999999764   46677789999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC
Q 010830          261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND  340 (499)
Q Consensus       261 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  340 (499)
                      +.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+..   +.+..+|+.++.+|.+.|
T Consensus       346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g  421 (597)
T 2xpi_A          346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEG  421 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence            999999999999999999998643 4568889999999999999999999999998864   457889999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 010830          341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN  420 (499)
Q Consensus       341 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  420 (499)
                      ++++|+++|+++.+.+ ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+
T Consensus       422 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          422 EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999998863 3477899999999999999999999999998864 3478899999999999999999999999


Q ss_pred             HHHHC----CCCCh--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          421 YILEN----GILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       421 ~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      ++.+.    +..|+  ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+...|.+.|++  |.+.++++++
T Consensus       500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA  578 (597)
T ss_dssp             HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99875    66787  7899999999999999999999999998875 34789999999999999998  8899888876


Q ss_pred             H
Q 010830          493 R  493 (499)
Q Consensus       493 ~  493 (499)
                      .
T Consensus       579 ~  579 (597)
T 2xpi_A          579 I  579 (597)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-33  Score=283.53  Aligned_cols=402  Identities=11%  Similarity=-0.059  Sum_probs=348.0

Q ss_pred             CCHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010830           79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS  156 (499)
Q Consensus        79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  156 (499)
                      ++...+..++.  ...|++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            45666677776  457899999999998864 5568899999999999999999999999988544 4688899999999


Q ss_pred             HHhcCChhHHHHHHHHHH-hC--------------CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHH
Q 010830          157 YCGAGKYDEAVMSFDVMS-MH--------------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA  221 (499)
Q Consensus       157 ~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  221 (499)
                      |.+.|++++|.++|+++. ..              |...+..+|+.++.+|.+. |++++|.++|+++.+..+.+...+.
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~  238 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVDAKCYEAFD  238 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCchhhHHHH
Confidence            999999999999999542 21              2344688999999999999 9999999999999875444555444


Q ss_pred             HH--------------------------------------HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830          222 IL--------------------------------------LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT  263 (499)
Q Consensus       222 ~l--------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~  263 (499)
                      .+                                      +..|.+.|++++|.++|+++.+.    |++..+|+.++.+
T Consensus       239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~  314 (597)
T 2xpi_A          239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADT  314 (597)
T ss_dssp             HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHH
T ss_pred             HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHH
Confidence            33                                      55667889999999999999653    4488999999999


Q ss_pred             HhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830          264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD  343 (499)
Q Consensus       264 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  343 (499)
                      |.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+.++|.++++++.+..   +.+..+|+.++..|.+.|+++
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHH
Confidence            999999999999999998765 3377889999999999999999999999999764   568999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 010830          344 NVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       344 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  423 (499)
                      +|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.
T Consensus       391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998742 2357899999999999999999999999999865 3478899999999999999999999999999


Q ss_pred             HCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCccC--HHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Q 010830          424 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIY--EVTMHKLKKAFYNESRS--MRDIFDSLERRC  494 (499)
Q Consensus       424 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~  494 (499)
                      +.. ..+..+|+.+...|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|+.  |.+.++++++..
T Consensus       469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (597)
T 2xpi_A          469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS  546 (597)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            754 347889999999999999999999999999876    66787  78999999999999999  999999887753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8.3e-33  Score=268.02  Aligned_cols=203  Identities=16%  Similarity=0.184  Sum_probs=143.3

Q ss_pred             HHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC---------hHH
Q 010830          275 KFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD---------VDN  344 (499)
Q Consensus       275 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~  344 (499)
                      .+.+++.+.+.... ...++.+|++|++.|++++|.++|++|.+.|  +.||..+||+||.+|++.+.         +++
T Consensus        11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A           11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            33444444444332 2235555566666666666666666666655  56666666666666654433         577


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          345 VFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       345 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      |.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830          425 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE  479 (499)
Q Consensus       425 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  479 (499)
                      .|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888888888888888877654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.4e-32  Score=264.79  Aligned_cols=186  Identities=17%  Similarity=0.232  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---------HHHHHHHHHHHhhCCCCCCH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---------VDEALKFLRVMKGENCFPTL  289 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~  289 (499)
                      .++.+|++|++.|++++|.++|++|.+. |+.| |..+||+||.+|++.+.         +++|.++|++|.+.|+.||.
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN-GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence            4555556666666666666666666554 5555 55556666655554432         45555555555555555555


Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 010830          290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE  369 (499)
Q Consensus       290 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  369 (499)
                      .||+++|.+|++.|++++|.++|++|.+.|  +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            555555555555555555555555555555  555555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 010830          370 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD  408 (499)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  408 (499)
                      +|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            555555555555555555555555555555555555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.5e-27  Score=227.16  Aligned_cols=378  Identities=11%  Similarity=0.061  Sum_probs=329.6

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|++++|.+.++.+.+..+.+...+..+...+.+.|++++|...++...+..+.+..+|..+...|.+.|++++|.+.
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   89 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            45789999999999887777788889999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830          170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW  249 (499)
Q Consensus       170 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  249 (499)
                      |+++.+.. +.+..+|..+..++... |++++|...|+++.+..+.+...+..+...+...|++++|.+.|+++.+.   
T Consensus        90 ~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  164 (388)
T 1w3b_A           90 YRHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---  164 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHcC-cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            99998763 33566799999999999 99999999999988766667788889999999999999999999999765   


Q ss_pred             CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830          250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY  329 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  329 (499)
                      .|++..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..+..   +.+..++
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~  240 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVH  240 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCCHHHH
Confidence            78788899999999999999999999999998865 2356788889999999999999999999999864   4468899


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc
Q 010830          330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA  409 (499)
Q Consensus       330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  409 (499)
                      ..+...|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence            9999999999999999999999998532 246789999999999999999999999998864 45788999999999999


Q ss_pred             CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcc
Q 010830          410 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES  480 (499)
Q Consensus       410 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  480 (499)
                      |++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++++.+.. +-+...+..+...+...|
T Consensus       319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence            99999999999998743 4457789999999999999999999999999653 224556666666655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=2e-26  Score=219.42  Aligned_cols=361  Identities=12%  Similarity=0.029  Sum_probs=320.2

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      +...+.+.|++++|.+.++.+.+..+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+. |+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-GQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC-CC
Confidence            34567889999999999999999988888899999999999999999999999987753 56788999999999999 99


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR  278 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~  278 (499)
                      +++|...|+++.+..+.+..+|..+...+.+.|++++|.+.|+++.+.   .|++...+..+...+...|++++|.+.|+
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999998766667888999999999999999999999999764   78778889999999999999999999999


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830          279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      ++.+.. +-+..++..+...+...|++++|...|+++.+.+   +.+...|..+...+...|++++|...|++..+.. +
T Consensus       160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p  234 (388)
T 1w3b_A          160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P  234 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence            998754 2357789999999999999999999999999875   4568899999999999999999999999988742 2


Q ss_pred             CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                      -+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  312 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA  312 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence            256889999999999999999999999999865 2356789999999999999999999999999854 55778999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       439 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      ..+.+.|++++|...++++.+.. +.+..++..+...+.+.|+.  |.+.++++++
T Consensus       313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999998753 34578899999999999999  9899888775

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.2e-23  Score=202.50  Aligned_cols=362  Identities=11%  Similarity=0.036  Sum_probs=254.7

Q ss_pred             CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830          108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS  187 (499)
Q Consensus       108 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  187 (499)
                      ..+.+...|..+...+.+.|++++|+.+|+.+.+..+.+..+|..+..+|...|++++|.+.|+.+.+.+ +.+..++..
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   99 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ   99 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence            4555667777788888888888888888888877777777788888888888888888888888877654 345667777


Q ss_pred             HHHHHHccCCchHHHHHHHHHHhccCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHhHccCCCCc
Q 010830          188 LLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAIL------------LEGWEKEGNVEEANKTFGEMVERFEWNPE  252 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~  252 (499)
                      +...+... |++++|...|+++.+..+.+.   ..+..+            ...+.+.|++++|.+.|+++.+.   .|.
T Consensus       100 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~  175 (450)
T 2y4t_A          100 RGHLLLKQ-GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVW  175 (450)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence            77777777 888888888887766544444   555555            33477888888888888888654   566


Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAV  332 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  332 (499)
                      +...+..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|...++++.+..   +.+...+..+
T Consensus       176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~  251 (450)
T 2y4t_A          176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHY  251 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CChHHHHHHH
Confidence            77778888888888888888888888877643 2356777888888888888888888888887753   3344555444


Q ss_pred             ------------HHHHHcCCChHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010830          333 ------------IGLLCNNDDVDNVFRFFDQMVFHGAFPD-----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT  395 (499)
Q Consensus       333 ------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~  395 (499)
                                  ...|.+.|++++|...|+++.+.  .|+     ...|..+...+.+.|++++|...++++.+.. +.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~  328 (450)
T 2y4t_A          252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN  328 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence                        67788888888888888888773  344     3467777788888888888888888887653 235


Q ss_pred             hhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHH------------HHhCC-----ChHHHHHHHHHH-
Q 010830          396 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG------------LRNLG-----RLSDVRRFAEEM-  457 (499)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~m-  457 (499)
                      ..++..+..+|...|++++|...++++.+.. +-+...+..+..+            |...|     +.+++.+.++++ 
T Consensus       329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~  407 (450)
T 2y4t_A          329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA  407 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH
Confidence            6778888888888888888888888887732 1234444444422            33334     556777777763 


Q ss_pred             HHcC--CccC-------HHHHHHHHHHHHhcccc
Q 010830          458 LNRR--ILIY-------EVTMHKLKKAFYNESRS  482 (499)
Q Consensus       458 ~~~~--~~p~-------~~~~~~ll~~~~~~g~~  482 (499)
                      .+..  ..++       ...+..+..+|...|+.
T Consensus       408 l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          408 LQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             HHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            3221  1122       23666677777766665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=2.8e-22  Score=194.69  Aligned_cols=345  Identities=12%  Similarity=0.060  Sum_probs=281.0

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+++.|+.+|+.+....+.+..+|..+...+.+.|++++|++.|+.+.+.++.+..++..+...|.+.|++++|.+.
T Consensus        37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  116 (450)
T 2y4t_A           37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD  116 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45789999999999988777788999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHHHhCCCCcCH----HHHHHHH------------HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830          170 FDVMSMHGVEQDV----VAVNSLL------------SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       170 ~~~m~~~g~~p~~----~~~~~ll------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      |+.+.+.  .|+.    ..+..+.            ..+... |++++|..+|+++.+..+.+..++..+...|.+.|++
T Consensus       117 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  193 (450)
T 2y4t_A          117 FKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP  193 (450)
T ss_dssp             HHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence            9999876  4543    4555553            337778 9999999999999887777899999999999999999


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHH------------HHHHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNA------------LDILV  300 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l------------i~~~~  300 (499)
                      ++|.+.|+++.+.   .|++..+|..+...|...|++++|+..|+++.+..  |+ ...+..+            ...|.
T Consensus       194 ~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (450)
T 2y4t_A          194 RKAISDLKAASKL---KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELI  268 (450)
T ss_dssp             GGGHHHHHHHHHH---HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999764   56688899999999999999999999999998653  43 3334333            78899


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCC-----HhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPN-----LIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK  375 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  375 (499)
                      +.|++++|...|+.+.+..    |+     ...|..+...+.+.|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus       269 ~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          269 RDGRYTDATSKYESVMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            9999999999999999864    43     4578999999999999999999999998752 236789999999999999


Q ss_pred             CHhHHHHHHHHHHHCCCCCChhhHHHHHH------------HHhccC-----ChhHHHHHHHHH-HHCCCCCh-------
Q 010830          376 RVHEVEKFFHEMIKNEWQPTPLNCATAIT------------MLLDAD-----EPEIAIEIWNYI-LENGILPL-------  430 (499)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~------------~~~~~g-----~~~~a~~~~~~m-~~~~~~p~-------  430 (499)
                      ++++|...|+++.+.. +-+...+..+..            .|...|     +.+++.+.++++ .+.  .||       
T Consensus       344 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~  420 (450)
T 2y4t_A          344 MYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEE  420 (450)
T ss_dssp             CHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHH
T ss_pred             CHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchH
Confidence            9999999999999853 224455555552            233344     566777777763 332  222       


Q ss_pred             ----HHHHHHHHHHHHhCCChHHH
Q 010830          431 ----EASANELLVGLRNLGRLSDV  450 (499)
Q Consensus       431 ----~~~~~~ll~~~~~~g~~~~a  450 (499)
                          ...+..+..+|-..++.+++
T Consensus       421 ~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          421 KKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHH
Confidence                23555566666666665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.7e-22  Score=195.85  Aligned_cols=359  Identities=12%  Similarity=0.055  Sum_probs=280.4

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|++++|+..|+.+.... |+..+|..+..++.+.|++++|++.|+++.+.++.+..+|..+..+|...|++++|...
T Consensus        17 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           17 FRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             HHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45789999999999887633 68999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHHhCCCCcC--------------------------------------------------------------------
Q 010830          170 FDVMSMHGVEQD--------------------------------------------------------------------  181 (499)
Q Consensus       170 ~~~m~~~g~~p~--------------------------------------------------------------------  181 (499)
                      |+.+.+.+ +++                                                                    
T Consensus        96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
T 2gw1_A           96 LSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE  174 (514)
T ss_dssp             HHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred             HHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence            99987664 111                                                                    


Q ss_pred             -----------HHHHHHHHHHHHc---cCCchHHHHHHHHHHhc-----c--C-------CCCHHHHHHHHHHHHhcCCH
Q 010830          182 -----------VVAVNSLLSAICR---QENQTSRALEFLNRVKK-----I--V-------DPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       182 -----------~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~ll~~~~~~g~~  233 (499)
                                 ...+......+..   . |++++|..+|+++.+     .  .       +.+..++..+...+...|++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (514)
T 2gw1_A          175 LTFANYDESNEADKELMNGLSNLYKRSP-ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP  253 (514)
T ss_dssp             CCCSSCCSSCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence                       1222222222222   5 888888888888755     1  1       23456777888888888899


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD  313 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  313 (499)
                      ++|.+.|+++.+.   .|. ...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++
T Consensus       254 ~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          254 LGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             HHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9998888888664   554 6778888888888888888888888887654 2356677788888888888899988888


Q ss_pred             HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010830          314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ  393 (499)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  393 (499)
                      ++.+..   +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+....
T Consensus       329 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          329 KAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            888764   4466788888888888888999988888887742 224567788888888888988888888888764211


Q ss_pred             -CC----hhhHHHHHHHHhc---cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          394 -PT----PLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       394 -p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                       ++    ...+..+...+..   .|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...+++..+.+
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence             11    2377788888888   888888888888887754 3356677778888888899999988888888654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.7e-22  Score=195.81  Aligned_cols=371  Identities=12%  Similarity=0.020  Sum_probs=308.0

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|......+.+.|++++|+..|+++.+.+ |+..+|..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..++
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            4567778899999999999999999999987 489999999999999999999999999998764 45667889999999


Q ss_pred             HccCCchHHHHHHHHHHhccCCCC--------------------------------------------------------
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPD--------------------------------------------------------  216 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~--------------------------------------------------------  216 (499)
                      ... |++++|...|+++....+++                                                        
T Consensus        84 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           84 EGL-GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHT-TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHH-hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999 99999999999875533221                                                        


Q ss_pred             -----------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHhHc----cCC-------CCchHHhHHH
Q 010830          217 -----------------------GDSFAILLEGWEK---EGNVEEANKTFGEMVER----FEW-------NPEHVLAYET  259 (499)
Q Consensus       217 -----------------------~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~----~~~-------~p~~~~~~~~  259 (499)
                                             ...+......+..   .|++++|...|+++.+.    ...       .|.+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                   2333333333443   89999999999998761    011       1446778899


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830          260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN  339 (499)
Q Consensus       260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  339 (499)
                      +...+...|++++|...|+++.+..  |+...+..+..++...|++++|...++.+.+..   +.+...+..+...|...
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHh
Confidence            9999999999999999999998765  337888889999999999999999999999874   45778899999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 010830          340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW  419 (499)
Q Consensus       340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  419 (499)
                      |++++|...|++..+... .+...+..+...+...|++++|..+++.+.+.. +.+..++..+...+...|++++|...+
T Consensus       318 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             TCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999988532 256788889999999999999999999998854 335678889999999999999999999


Q ss_pred             HHHHHCCCC-Ch----HHHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830          420 NYILENGIL-PL----EASANELLVGLRN---LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS  489 (499)
Q Consensus       420 ~~m~~~~~~-p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~  489 (499)
                      +.+.+.... ++    ...+..+...+.+   .|++++|...++++.+.. +.+..++..+...+.+.|+.  |.+.++.
T Consensus       396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            998863211 11    3388888999999   999999999999998764 33677888999999999998  8888888


Q ss_pred             HHHHH
Q 010830          490 LERRC  494 (499)
Q Consensus       490 ~~~~~  494 (499)
                      .++..
T Consensus       475 a~~~~  479 (514)
T 2gw1_A          475 SADLA  479 (514)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            87653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=2.6e-20  Score=185.10  Aligned_cols=362  Identities=12%  Similarity=0.080  Sum_probs=279.0

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ...|+++.|+..|+.+....+.+..+|..+..++.+.|++++|++.|+++.+.++.+..++..+...+...|++++|.+.
T Consensus        36 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  115 (537)
T 3fp2_A           36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD  115 (537)
T ss_dssp             HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45789999999999988877889999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHHHhCCC------------------------------------CcCHH------------------------------
Q 010830          170 FDVMSMHGV------------------------------------EQDVV------------------------------  183 (499)
Q Consensus       170 ~~~m~~~g~------------------------------------~p~~~------------------------------  183 (499)
                      |+.+....-                                    .|+..                              
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (537)
T 3fp2_A          116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL  195 (537)
T ss_dssp             HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence            964421110                                    01111                              


Q ss_pred             HHHHHHHHHHcc-------CCchHHHHHHHHHHhccCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhHccCC
Q 010830          184 AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGD-------SFAILLEGWEKEGNVEEANKTFGEMVERFEW  249 (499)
Q Consensus       184 ~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  249 (499)
                      ....+...+...       .+++++|..+++++.+..+.+..       ++..+...+...|++++|.+.|++..+.   
T Consensus       196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---  272 (537)
T 3fp2_A          196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---  272 (537)
T ss_dssp             HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---
Confidence            111111111111       13678888888887765544433       4666777888889999999999998764   


Q ss_pred             CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830          250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY  329 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  329 (499)
                      .|+ ...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...++++.+..   +.+...|
T Consensus       273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~  347 (537)
T 3fp2_A          273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---PENVYPY  347 (537)
T ss_dssp             CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCSHHH
T ss_pred             CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHH
Confidence            664 6788889999999999999999999887754 2356788888899999999999999999998864   4456788


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-----CCChhhHHHHHH
Q 010830          330 NAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-----QPTPLNCATAIT  404 (499)
Q Consensus       330 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~  404 (499)
                      ..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...     ......+.....
T Consensus       348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~  426 (537)
T 3fp2_A          348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT  426 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence            889999999999999999999988753 23466788888899999999999999998876421     111122334455


Q ss_pred             HHhcc----------CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          405 MLLDA----------DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       405 ~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      .+...          |++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            66666          99999999999988754 3456778888899999999999999999988754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=2.8e-20  Score=184.86  Aligned_cols=369  Identities=12%  Similarity=0.012  Sum_probs=295.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|..+...+.+.|++++|++.|+++.+.++.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            45778888999999999999999999999998899999999999999999999999999998764 45677888888899


Q ss_pred             HccCCchHHHHHHHHHHhccCC-------------------------------------CCHH-----------------
Q 010830          193 CRQENQTSRALEFLNRVKKIVD-------------------------------------PDGD-----------------  218 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~-------------------------------------~~~~-----------------  218 (499)
                      ... |++++|...|+.+.....                                     |+..                 
T Consensus       104 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          104 ESL-GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHH-TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHc-CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            999 999999999865422110                                     1100                 


Q ss_pred             -------------HHHHHHHHHHh--------cCCHHHHHHHHHHHhHccCCCCchHH-------hHHHHHHHHhcCCCH
Q 010830          219 -------------SFAILLEGWEK--------EGNVEEANKTFGEMVERFEWNPEHVL-------AYETFLITLIRGKQV  270 (499)
Q Consensus       219 -------------~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~li~~~~~~~~~  270 (499)
                                   ....+...+..        .|++++|..+|+++.+.   .|++..       ++..+...+...|++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                         11122222211        24788999999998654   665433       467777888999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHH
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFD  350 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  350 (499)
                      ++|.+.|++..+..  |+...+..+...+...|++++|...++.+.+..   +.+..+|..+...|...|++++|...|+
T Consensus       260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~  334 (537)
T 3fp2_A          260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQ  334 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999998865  567888889999999999999999999999875   5578899999999999999999999999


Q ss_pred             HHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC----
Q 010830          351 QMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG----  426 (499)
Q Consensus       351 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----  426 (499)
                      +..+... .+...|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+..    
T Consensus       335 ~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          335 KAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            9988532 246788899999999999999999999998864 3456788899999999999999999999987532    


Q ss_pred             -CCChHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          427 -ILPLEASANELLVGLRNL----------GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       427 -~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                       .......+..+...+.+.          |++++|...+++..+.. +.+...+..+...+.+.|+.  |.+.++..++.
T Consensus       413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             111222344445667777          99999999999999764 34678899999999999998  99999888775


Q ss_pred             H
Q 010830          494 C  494 (499)
Q Consensus       494 ~  494 (499)
                      .
T Consensus       492 ~  492 (537)
T 3fp2_A          492 A  492 (537)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.6e-19  Score=169.30  Aligned_cols=315  Identities=10%  Similarity=-0.005  Sum_probs=186.2

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      |+..|..+...+.+.|++++|+..|+.+.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            345666777777777888888888877777776677777777777777777777777777776552 2345666666666


Q ss_pred             HHccCCchHHHHHHHHHHhccCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhHccCCCCchHHh
Q 010830          192 ICRQENQTSRALEFLNRVKKIVD---PDGDSFAIL------------LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA  256 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~  256 (499)
                      +... |++++|...+++..+..+   .+...+..+            ...+...|++++|.+.++++.+.   .|.+...
T Consensus        81 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  156 (359)
T 3ieg_A           81 LLKQ-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDAEL  156 (359)
T ss_dssp             HHHH-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHc-CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCchHH
Confidence            6666 777777777777665443   344444443            45666667777777777766543   4555566


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHH
Q 010830          257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLL  336 (499)
Q Consensus       257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~  336 (499)
                      +..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+..   +.+...+..+... 
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~-  231 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQV-  231 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---ccchHHHHHHHHH-
Confidence            6666666666677777776666666543 2345556666666666666666666666666543   2222222211000 


Q ss_pred             HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHhccCCh
Q 010830          337 CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNCATAITMLLDADEP  412 (499)
Q Consensus       337 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~  412 (499)
                                      .      .......+...+.+.|++++|...++++.+.... +.    ..+..+...+...|++
T Consensus       232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~  288 (359)
T 3ieg_A          232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP  288 (359)
T ss_dssp             ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence                            0      0001112234455556666666666655553211 11    1233345555566666


Q ss_pred             hHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          413 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       413 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ++|.+.++...+.. +.+...+..+...+.+.|++++|...+++..+.
T Consensus       289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            66666666665532 224455556666666666666666666666644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=1.1e-18  Score=163.58  Aligned_cols=313  Identities=11%  Similarity=0.040  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      +..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+... |++++|...++++.+..+.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM-GKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            4556667777777777777777777776543 33455666666666666 777777777776655445556666677777


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN  303 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  303 (499)
                      |...|++++|.+.|++..+   ..|   ++...+..+...+.                       ...+..+...+...|
T Consensus        81 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred             HHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence            7777777777777776643   244   44444443322110                       011222345667777


Q ss_pred             CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 010830          304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF  383 (499)
Q Consensus       304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  383 (499)
                      ++++|.++++++.+..   +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus       135 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  210 (359)
T 3ieg_A          135 DYTAAITFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE  210 (359)
T ss_dssp             CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7788887777777664   4566777777777888888888888888777642 23566777777778888888888888


Q ss_pred             HHHHHHCCCCCChhhHH------------HHHHHHhccCChhHHHHHHHHHHHCCCCChH---HHHHHHHHHHHhCCChH
Q 010830          384 FHEMIKNEWQPTPLNCA------------TAITMLLDADEPEIAIEIWNYILENGILPLE---ASANELLVGLRNLGRLS  448 (499)
Q Consensus       384 ~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~  448 (499)
                      ++.+.+... .+...+.            .+...+.+.|++++|...++++.+.......   ..+..+...+.+.|+++
T Consensus       211 ~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          211 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence            887776431 2222222            2366788999999999999999875432111   23555778899999999


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          449 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       449 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      +|...+++..+.. +.+..++..+...+.+.|+.  |.+.++..++.
T Consensus       290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999999863 33678999999999999998  88888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.1e-18  Score=159.74  Aligned_cols=290  Identities=8%  Similarity=-0.029  Sum_probs=176.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL  188 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  188 (499)
                      .+.+...+..+...+...|++++|.++|+++.+.++.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            445556667777777777888888888888777776666667777777777788888887777776642 3345566666


Q ss_pred             HHHHHccCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830          189 LSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG  267 (499)
Q Consensus       189 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~  267 (499)
                      ...+... | ++++|...|++.....+.+...|..+...+...|++++|.+.|++..+.   .|++...+..+...+...
T Consensus        97 ~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           97 GCYYLMV-GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHS-CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHh-hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHH
Confidence            6666666 5 6777777777766555555666777777777777777777777776543   344445566666666666


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCC------CCCCCHhHHHHHHHHHHcCCC
Q 010830          268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGF------NLMPNLIMYNAVIGLLCNNDD  341 (499)
Q Consensus       268 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~  341 (499)
                      |++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+...      ..+.+..++..+...|.+.|+
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            77777777666666543 22345555666666666666666666666554310      002223455555566666666


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010830          342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML  406 (499)
Q Consensus       342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  406 (499)
                      +++|...|++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++
T Consensus       252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  314 (330)
T 3hym_B          252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence            666666666555432 1234455555555555666666666655554432 12334444444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=2e-18  Score=159.89  Aligned_cols=296  Identities=9%  Similarity=0.002  Sum_probs=245.6

Q ss_pred             HHhcCCCCCHHHHHHHHHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHH
Q 010830           72 LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA  151 (499)
Q Consensus        72 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  151 (499)
                      +...+..++............|+++.|+++|+.+....+.+...+..++..+...|++++|..+++++.+..+.+...|.
T Consensus        15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   94 (330)
T 3hym_B           15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF   94 (330)
T ss_dssp             -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence            33333344433333333355799999999999987777777888888999999999999999999999999888889999


Q ss_pred             HHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 010830          152 SIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE  230 (499)
Q Consensus       152 ~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~  230 (499)
                      .+...+...| ++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+..+.+...+..+...|...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            9999999999 9999999999998764 44577888899999999 9999999999998876667778888899999999


Q ss_pred             CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--------CCCCHhhHHHHHHHHHHc
Q 010830          231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------CFPTLKFFSNALDILVKL  302 (499)
Q Consensus       231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~  302 (499)
                      |++++|.+.+++..+   ..|++...+..+...+...|++++|...+++..+..        ...+..++..+..++...
T Consensus       173 ~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  249 (330)
T 3hym_B          173 NNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL  249 (330)
T ss_dssp             TCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence            999999999999955   477788899999999999999999999999887631        133456888999999999


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHH-HhcCCH
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECL-IKNKRV  377 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~~  377 (499)
                      |++++|...+++..+..   +.+...+..+...|.+.|++++|.+.|++..+.  .| +...+..+..++ ...|+.
T Consensus       250 g~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          250 KKYAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred             cCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence            99999999999999875   457789999999999999999999999998874  34 556677776666 345554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=1e-15  Score=149.88  Aligned_cols=339  Identities=12%  Similarity=0.012  Sum_probs=285.8

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCCh
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKY  163 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~  163 (499)
                      .++.+.|...|+.+.+.  -+..++..|...|..    .+++++|.+.|++..+.+  +...+..|...|..    .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence            57889999999887653  467889999999998    899999999999999886  66778888888888    8899


Q ss_pred             hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHH
Q 010830          164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEE  235 (499)
Q Consensus       164 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~  235 (499)
                      ++|.++|+...+.|   +...+..+-..|..    . ++.++|..+|++..+.  .+...+..+...|..    .++.++
T Consensus       132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence            99999999998865   56677777777776    5 8999999999988663  477888889999988    899999


Q ss_pred             HHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhH
Q 010830          236 ANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTH  307 (499)
Q Consensus       236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~  307 (499)
                      |.+.|++..+. +    +...+..+...|..    .+++++|.++|++..+.|   +...+..+-..|..    .++.++
T Consensus       206 A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~  277 (490)
T 2xm6_A          206 SAQWYRKSATS-G----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK  277 (490)
T ss_dssp             HHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred             HHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence            99999998774 3    45678888888886    789999999999988876   45667777777877    899999


Q ss_pred             HHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHhH
Q 010830          308 AVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-----DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK---RVHE  379 (499)
Q Consensus       308 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~  379 (499)
                      |..+|++..+.|     +...+..+...|...     +++++|+..|++..+.|   +...+..+...|...|   +.++
T Consensus       278 A~~~~~~a~~~~-----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~  349 (490)
T 2xm6_A          278 ALEWYRKSAEQG-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK  349 (490)
T ss_dssp             HHHHHHHHHTTT-----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence            999999998876     567788888888877     89999999999999864   5567777777787766   7899


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHH
Q 010830          380 VEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVR  451 (499)
Q Consensus       380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~  451 (499)
                      |.+.|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..|-..|.+    .+++++|.
T Consensus       350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~  423 (490)
T 2xm6_A          350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW  423 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            999999999875   56788888888887    799999999999999876   45677778888887    89999999


Q ss_pred             HHHHHHHHcCC
Q 010830          452 RFAEEMLNRRI  462 (499)
Q Consensus       452 ~~~~~m~~~~~  462 (499)
                      ..|++..+.+.
T Consensus       424 ~~~~~A~~~~~  434 (490)
T 2xm6_A          424 AWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHCCC
Confidence            99999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=2.2e-18  Score=162.41  Aligned_cols=300  Identities=8%  Similarity=-0.069  Sum_probs=153.8

Q ss_pred             CCchhHHH-HHHHhcCCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830           93 DSPSSAVD-FFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        93 ~~~~~a~~-~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      ++.+.|.. .|+......+    .+...+..+...+.+.|++++|...|+++.+..+.+..+|..+...|...|++++|.
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  118 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI  118 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            45555555 5554433111    123456666666666677777777776666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830          168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF  247 (499)
Q Consensus       168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  247 (499)
                      +.|+++.+.. +.+..++..+...+... |++++|...++++....+.+...+..+...       .          .  
T Consensus       119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~--  177 (368)
T 1fch_A          119 SALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEG-------A----------G--  177 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC--------------------------
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------h----------h--
Confidence            6666665543 33455555555555555 666666666665544332222222111000       0          0  


Q ss_pred             CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830          248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL  326 (499)
Q Consensus       248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  326 (499)
                      ...+ . ..+.. +..+...|++++|+..|+++.+..-. ++..++..+...+...|++++|...++++.+..   +.+.
T Consensus       178 ~~~~-~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~  251 (368)
T 1fch_A          178 GAGL-G-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR---PNDY  251 (368)
T ss_dssp             ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred             hhcc-c-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCCH
Confidence            0000 0 00001 22222555555555555555543211 134555555556666666666666666655543   3345


Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC----------CCh
Q 010830          327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ----------PTP  396 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------p~~  396 (499)
                      .+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+....          ...
T Consensus       252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  330 (368)
T 1fch_A          252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE  330 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence            566666666666666666666666655531 123455566666666666666666666665543110          014


Q ss_pred             hhHHHHHHHHhccCChhHHHHHHH
Q 010830          397 LNCATAITMLLDADEPEIAIEIWN  420 (499)
Q Consensus       397 ~~~~~li~~~~~~g~~~~a~~~~~  420 (499)
                      .+|..+..++...|++++|..+++
T Consensus       331 ~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          331 NIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHHHHHHHHHhCChHhHHHhHH
Confidence            556666666666666666666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=2.5e-18  Score=161.97  Aligned_cols=287  Identities=11%  Similarity=0.022  Sum_probs=178.6

Q ss_pred             cCChhHHHH-HHHHHHhCCC-Cc--CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 010830          160 AGKYDEAVM-SFDVMSMHGV-EQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE  235 (499)
Q Consensus       160 ~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  235 (499)
                      .|++++|.+ .|++.....- .|  +...+..+...+... |++++|..+|+++.+..+.+..++..+...|.+.|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence            355555555 5544332210 01  233344455555555 666666666666555445555566666666666666666


Q ss_pred             HHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH---------------HHHHHH
Q 010830          236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN---------------ALDILV  300 (499)
Q Consensus       236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~  300 (499)
                      |.+.|+++.+.   .|++..++..+...+...|++++|++.++++.+.... +...+..               .+..+.
T Consensus       117 A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          117 AISALRRCLEL---KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            66666666443   4545556666666666666666666666666554311 1111110               233334


Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHh
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVH  378 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  378 (499)
                      ..|++++|...++++.+..   +.  +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLD---PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHS---TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHhC---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence            7788888888888888764   22  47788888888888888888888888877642 234667888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCC----------hHHHHHHHHHHHHhCCChH
Q 010830          379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP----------LEASANELLVGLRNLGRLS  448 (499)
Q Consensus       379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~  448 (499)
                      +|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+.....          ...+|..+..+|.+.|+++
T Consensus       269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            8888888887753 2356677788888888888888888888777522111          1567778888888888888


Q ss_pred             HHHHHHHH
Q 010830          449 DVRRFAEE  456 (499)
Q Consensus       449 ~a~~~~~~  456 (499)
                      +|..++++
T Consensus       348 ~A~~~~~~  355 (368)
T 1fch_A          348 AYGAADAR  355 (368)
T ss_dssp             GHHHHHTT
T ss_pred             hHHHhHHH
Confidence            88777663

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.82  E-value=8.7e-15  Score=143.31  Aligned_cols=352  Identities=12%  Similarity=0.072  Sum_probs=293.5

Q ss_pred             CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcC
Q 010830          110 RLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKYDEAVMSFDVMSMHGVEQD  181 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~  181 (499)
                      ..++.++..+...|..    .+++++|++.|+...+.+  +...+..|...|..    .+++++|.++|++..+.|   +
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            4467788888888888    899999999999998875  67788889999998    899999999999998765   5


Q ss_pred             HHHHHHHHHHHHc----cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhHccCCCCch
Q 010830          182 VVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEH  253 (499)
Q Consensus       182 ~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~  253 (499)
                      ...+..|-..|..    . +++++|..+|++..+.  .+...+..+...|..    .++.++|.+.|++..+. +    +
T Consensus       111 ~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~----~  182 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G----N  182 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----C
T ss_pred             HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----C
Confidence            6677777777776    5 8999999999998663  467788888888887    88999999999999774 3    5


Q ss_pred             HHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          254 VLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       254 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      ...+..+...|..    .++.++|+++|++..+.|   +...+..+...|..    .++.++|..+|++..+.+     +
T Consensus       183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~  254 (490)
T 2xm6_A          183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----N  254 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----C
T ss_pred             HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----C
Confidence            6688888888888    899999999999998876   56677778888876    789999999999999876     5


Q ss_pred             HhHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCCh
Q 010830          326 LIMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTP  396 (499)
Q Consensus       326 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~  396 (499)
                      ...+..+...|..    .++.++|+..|++..+.|   +...+..+...|...     ++.++|...|++..+.+   +.
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~  328 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA  328 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence            6677778788877    899999999999998764   556777788888877     89999999999999876   45


Q ss_pred             hhHHHHHHHHhccC---ChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCccCHHHH
Q 010830          397 LNCATAITMLLDAD---EPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRILIYEVTM  469 (499)
Q Consensus       397 ~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~  469 (499)
                      ..+..+...|...|   ++++|.++|++..+.|   +...+..|-..|..    .+++++|..++++..+.+   +...+
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~  402 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQ  402 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHH
Confidence            66777777777656   7899999999999865   56778888888888    899999999999999876   46677


Q ss_pred             HHHHHHHHh----cccc--hHHHHHHHHHHH
Q 010830          470 HKLKKAFYN----ESRS--MRDIFDSLERRC  494 (499)
Q Consensus       470 ~~ll~~~~~----~g~~--a~~~~~~~~~~~  494 (499)
                      ..|-..|..    .++.  |.+.|+...+..
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            778777877    5666  888888887765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=9.4e-19  Score=164.80  Aligned_cols=235  Identities=9%  Similarity=-0.086  Sum_probs=131.0

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      .+...|..+...+.+.|++++|++.|+.+.+..+.+..+|..+...|...|++++|++.|++..+.. +.+..++..+..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3445577777778888888888888888877777777777888888888888888888887776553 334566666666


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPD----------GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYE  258 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~  258 (499)
                      .+... |++++|...++++.+..+.+          ...+..+...+.+.|++++|.+.|+++.+.   .|+  +..+|.
T Consensus       142 ~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~  217 (365)
T 4eqf_A          142 SYTNT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQT  217 (365)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHH
T ss_pred             HHHcc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHH
Confidence            66666 67777777666654321111          112223345555555555555555555443   333  344555


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc
Q 010830          259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN  338 (499)
Q Consensus       259 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  338 (499)
                      .+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++++.+..   +.+..+|..+...|.+
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~  293 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN  293 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence            55555555555555555555544432 1234445555555555555555555555555432   2234445555555555


Q ss_pred             CCChHHHHHHHHHHHH
Q 010830          339 NDDVDNVFRFFDQMVF  354 (499)
Q Consensus       339 ~~~~~~a~~~~~~m~~  354 (499)
                      .|++++|...|+++.+
T Consensus       294 ~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          294 LGAYREAVSNFLTALS  309 (365)
T ss_dssp             HTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            5555555555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=1e-15  Score=151.50  Aligned_cols=404  Identities=10%  Similarity=0.043  Sum_probs=291.6

Q ss_pred             CHHHHHHHHH-hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHH-
Q 010830           80 TPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY-  157 (499)
Q Consensus        80 ~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~-  157 (499)
                      +......++. ...++.+.|..+|+.+....+.+...|..++..+.+.|++++|.++|+++.... |+...|...+... 
T Consensus        12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~~~   90 (530)
T 2ooe_A           12 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVR   90 (530)
T ss_dssp             CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHH
Confidence            3444444444 346899999999999998889999999999999999999999999999999887 4888888887643 


Q ss_pred             HhcCChhHHHH----HHHHHHh-CCCCc-CHHHHHHHHHHHHc---------cCCchHHHHHHHHHHhccCCCC--HHHH
Q 010830          158 CGAGKYDEAVM----SFDVMSM-HGVEQ-DVVAVNSLLSAICR---------QENQTSRALEFLNRVKKIVDPD--GDSF  220 (499)
Q Consensus       158 ~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~--~~~~  220 (499)
                      ...|+++.|.+    +|+.... .|..| +...|...+.....         . |+++.|..+|++... .+.+  ...|
T Consensus        91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~-~P~~~~~~~~  168 (530)
T 2ooe_A           91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCV-NPMINIEQLW  168 (530)
T ss_dssp             HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred             HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH-hHHHHHHHHHHHHHh-chhhhHHHHH
Confidence            45678887765    7776654 36554 45677777776544         5 889999999999877 2221  2333


Q ss_pred             HHHHHHH-------------HhcCCHHHHHHHHHHHhH---ccC-----CCCch-------HHhHHHHHHHHhcC----C
Q 010830          221 AILLEGW-------------EKEGNVEEANKTFGEMVE---RFE-----WNPEH-------VLAYETFLITLIRG----K  268 (499)
Q Consensus       221 ~~ll~~~-------------~~~g~~~~a~~~~~~~~~---~~~-----~~p~~-------~~~~~~li~~~~~~----~  268 (499)
                      .......             .+.++++.|..++.++..   ...     +.|..       ...|...+......    +
T Consensus       169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~  248 (530)
T 2ooe_A          169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE  248 (530)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred             HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence            3322211             134567777777766321   111     23321       24566655444332    2


Q ss_pred             CH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH-------cCCHh-------HHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          269 QV----DEALKFLRVMKGENCFPTLKFFSNALDILVK-------LNDST-------HAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       269 ~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      +.    +++..+|++..... +-+...|......+.+       .|+++       +|..++++..+.-  .+.+...|.
T Consensus       249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~  325 (530)
T 2ooe_A          249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF  325 (530)
T ss_dssp             CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHH
Confidence            32    47788888887653 3456777777777775       68887       8999999998732  345788999


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH-Hh
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS--LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM-LL  407 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~  407 (499)
                      .++..+.+.|++++|..+|+++.+.  .|+.  ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +.
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY  402 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence            9999999999999999999999984  4542  478888888899999999999999998863 1223333332222 33


Q ss_pred             ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CccC--HHHHHHHHHHHHhcccc--
Q 010830          408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-ILIY--EVTMHKLKKAFYNESRS--  482 (499)
Q Consensus       408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~--  482 (499)
                      ..|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...++.....|+.  
T Consensus       403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~  481 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  481 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred             HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5899999999999988743 3357889999999999999999999999999864 2332  55788888888888987  


Q ss_pred             hHHHHHHHHHH
Q 010830          483 MRDIFDSLERR  493 (499)
Q Consensus       483 a~~~~~~~~~~  493 (499)
                      +..+...+.+.
T Consensus       482 ~~~~~~r~~~~  492 (530)
T 2ooe_A          482 ILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.81  E-value=2.7e-18  Score=161.71  Aligned_cols=235  Identities=9%  Similarity=0.047  Sum_probs=136.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      +...|..+...+.+.|++++|.++|+.+.+.. +.+..++..+...+... |++++|...|+++.+..+.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            44457777888888888888888888877653 34566777777777777 77777777777776655566777777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH----------HHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHH
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET----------FLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSN  294 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~----------li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~  294 (499)
                      .|...|++++|.+.|+++.+.   .|++...+..          +...+.+.|++++|++.|+++.+..-. .+..++..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            777777777777777777553   3433322322          255555556666666666555543211 13445555


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN  374 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  374 (499)
                      +...|...|++++|.+.++++.+..   +.+..+|+.+...|.+.|++++|+..|+++.+.. +.+...+..+..+|...
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVR---PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence            5555555555555555555555542   3345555555555555555555555555555431 11244455555555555


Q ss_pred             CCHhHHHHHHHHHHH
Q 010830          375 KRVHEVEKFFHEMIK  389 (499)
Q Consensus       375 g~~~~a~~~~~~~~~  389 (499)
                      |++++|...|+++.+
T Consensus       295 g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          295 GAYREAVSNFLTALS  309 (365)
T ss_dssp             TCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=2e-17  Score=152.99  Aligned_cols=265  Identities=11%  Similarity=0.002  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            34555666777777777777777777777666667777777777777777777777777776543 33455666666666


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhHccCCCCchHHhH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAIL--------------LE-GWEKEGNVEEANKTFGEMVERFEWNPEHVLAY  257 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~  257 (499)
                      ... |++++|...++++.+..+.+...+..+              .. .+...|++++|.+.++++.+.   .|++...+
T Consensus       100 ~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~  175 (327)
T 3cv0_A          100 TNE-HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM---NPNDAQLH  175 (327)
T ss_dssp             HHT-TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH---STTCHHHH
T ss_pred             HHc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh---CCCCHHHH
Confidence            666 777777777766654333333333332              22 255566666666666666543   44455566


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830          258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC  337 (499)
Q Consensus       258 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~  337 (499)
                      ..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..   +.+...+..+...|.
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN---PGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence            666666666666666666666655433 2234555556666666666666666666665543   334555666666666


Q ss_pred             cCCChHHHHHHHHHHHHCCCCC-----------CHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 010830          338 NNDDVDNVFRFFDQMVFHGAFP-----------DSLTYNMIFECLIKNKRVHEVEKFFHE  386 (499)
Q Consensus       338 ~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~  386 (499)
                      +.|++++|.+.|+++.+.....           +...|..+..++.+.|+.++|..+++.
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            6666666666666555421110           244555555555566666665555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=9.5e-20  Score=181.65  Aligned_cols=119  Identities=11%  Similarity=0.015  Sum_probs=77.8

Q ss_pred             CHhHHHHHHHHHHcCCChHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 010830          325 NLIMYNAVIGLLCNNDDVDNVFRFFDQMVF---HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT  401 (499)
Q Consensus       325 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  401 (499)
                      -..+||+||.+||+.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345666666666666666666666665543   35666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhccCCh-hHHHHHHHHHHHCCCCChHHHHHHHHHHHHh
Q 010830          402 AITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRN  443 (499)
Q Consensus       402 li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  443 (499)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            66666666653 5666666666666666666666666655444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=1e-14  Score=144.35  Aligned_cols=371  Identities=10%  Similarity=0.070  Sum_probs=267.7

Q ss_pred             CHHHHHHHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHH-HhCCChHHHHH----HHHHHHhC-C--CCCHHH
Q 010830           80 TPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL-GKNGRFEQMWN----AVRVMKED-G--VLSLPT  149 (499)
Q Consensus        80 ~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-~--~~~~~~  149 (499)
                      +.......+.  ...|+.+.|..+|+.+.... |+...|..++... ...|+.+.|.+    +|+..... |  +.+...
T Consensus        45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~  123 (530)
T 2ooe_A           45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI  123 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH
Confidence            3444444444  45789999999999988755 5888898888643 45678877765    77776543 3  456788


Q ss_pred             HHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------------HccCCchHHHHHHHH
Q 010830          150 FASIFDSYCG---------AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-------------CRQENQTSRALEFLN  207 (499)
Q Consensus       150 ~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-------------~~~~~~~~~a~~~~~  207 (499)
                      |...+....+         .|+++.|..+|++..+.........|.......             .+. +++..|..++.
T Consensus       124 w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~-~~~~~A~~~~~  202 (530)
T 2ooe_A          124 WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRS-RDYMNARRVAK  202 (530)
T ss_dssp             HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhh-HHHHHHHHHHH
Confidence            8888887765         789999999999998732111123343322210             123 56777887776


Q ss_pred             HHhc-------c---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhHccCCCCchHHhHHHHH
Q 010830          208 RVKK-------I---VDPD--------GDSFAILLEGWEKE----GNV----EEANKTFGEMVERFEWNPEHVLAYETFL  261 (499)
Q Consensus       208 ~~~~-------~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~p~~~~~~~~li  261 (499)
                      .+..       .   ++|+        ...|...+......    ++.    +.+..+|++....   .|.+...|..++
T Consensus       203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---~p~~~~~w~~~~  279 (530)
T 2ooe_A          203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAA  279 (530)
T ss_dssp             HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            6321       1   2443        24555555433222    232    3777889888664   677788899998


Q ss_pred             HHHhc-------CCCHH-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC-H
Q 010830          262 ITLIR-------GKQVD-------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN-L  326 (499)
Q Consensus       262 ~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~  326 (499)
                      ..+.+       .|+++       +|.++|++..+.-.+-+...+..++..+.+.|++++|..+|+++++..   +.+ .
T Consensus       280 ~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~  356 (530)
T 2ooe_A          280 QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPT  356 (530)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHH
T ss_pred             HHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCch
Confidence            88875       78887       899999998863233457888899999999999999999999999853   223 3


Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010830          327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFE-CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM  405 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  405 (499)
                      ..|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|+..++.. +-+...+..++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~  434 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY  434 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            5899999999999999999999999987521 12233332222 2346899999999999998853 2357888999999


Q ss_pred             HhccCChhHHHHHHHHHHHCC-CCCh--HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          406 LLDADEPEIAIEIWNYILENG-ILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       406 ~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      +.+.|+.++|..+|++....+ ..|+  ...|...+....+.|+.+.+..+.+++.+.
T Consensus       435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999854 2332  458888888888999999999999998864

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=177.70  Aligned_cols=151  Identities=17%  Similarity=0.174  Sum_probs=108.6

Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMY  329 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  329 (499)
                      -..+||++|++|++.|++++|.++|++|.+   .|+.||..|||+||++||+.|++++|.++|++|.+.|  +.||..||
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G--~~PDvvTY  203 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCcHHHH
Confidence            345788888888888888888888876653   4677888888888888888888888888888888888  78888888


Q ss_pred             HHHHHHHHcCCCh-HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC------hhhHHHH
Q 010830          330 NAVIGLLCNNDDV-DNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT------PLNCATA  402 (499)
Q Consensus       330 ~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l  402 (499)
                      |++|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.    .+++..+++ ..++.|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            8888888888764 67788888888888888888888877665553    333334444 2244443      4455556


Q ss_pred             HHHHhccC
Q 010830          403 ITMLLDAD  410 (499)
Q Consensus       403 i~~~~~~g  410 (499)
                      .+.|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            66666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=9.9e-17  Score=148.22  Aligned_cols=253  Identities=10%  Similarity=-0.007  Sum_probs=153.5

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |++++|..+|+++.+..+.+...+..+...+.+.|++++|.+.|+++.+.   .|++..++..+...+...|++++|++.
T Consensus        35 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~  111 (327)
T 3cv0_A           35 ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHNANAALAS  111 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34444444444333322333444444444444444444444444444332   333344444444444444444444444


Q ss_pred             HHHHhhCCCCCCHhhHHH-------------H-HH-HHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830          277 LRVMKGENCFPTLKFFSN-------------A-LD-ILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD  341 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  341 (499)
                      ++++.+... .+...+..             + .. .+...|++++|...++++.+..   +.+...+..+...|.+.|+
T Consensus       112 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~  187 (327)
T 3cv0_A          112 LRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGVLYNLSNN  187 (327)
T ss_dssp             HHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcc
Confidence            444443220 01111111             1 11 2556677788888888877764   4467778888888888888


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                      +++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++
T Consensus       188 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  265 (327)
T 3cv0_A          188 YDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVR  265 (327)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            888888888877642 2346677778888888888888888888877753 23566777888888888888888888888


Q ss_pred             HHHCCCCC-----------hHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 010830          422 ILENGILP-----------LEASANELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       422 m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      +.+.....           +...|..+..++.+.|++++|..++++..
T Consensus       266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            77633221           46778888888888899888888876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.76  E-value=6e-16  Score=140.02  Aligned_cols=249  Identities=13%  Similarity=0.143  Sum_probs=134.2

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 010830          157 YCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE  234 (499)
Q Consensus       157 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  234 (499)
                      ....|++..|+..++.....  .|+.  .....+.++|... |+++.|+..++.   ..+|+..++..+...+...|+.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~-g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQ-RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHT-TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHC-CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            34455566666555544322  2322  2333444555555 555555554332   23445555566666666666666


Q ss_pred             HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830          235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI  314 (499)
Q Consensus       235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  314 (499)
                      +|.+.++++... +..|++...+..+...+.+.|++++|++.+++      ..+...+..+...+.+.|+.++|.+.++.
T Consensus        83 ~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           83 AIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666666543 44555555555666666666666666666654      24455555666666666666666666666


Q ss_pred             HHhcCCCCCCCHh---HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          315 MVGIGFNLMPNLI---MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       315 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      +.+..    |+..   .....+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|+++++..
T Consensus       156 ~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          156 MQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66543    3211   1112223333445666666666666554 23345556666666666666666666666665543


Q ss_pred             CCCChhhHHHHHHHHhccCChhH-HHHHHHHHHH
Q 010830          392 WQPTPLNCATAITMLLDADEPEI-AIEIWNYILE  424 (499)
Q Consensus       392 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~  424 (499)
                       +-+..++..++..+...|+.++ +.++++++.+
T Consensus       231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             2244555555555555665543 4455555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=2.9e-16  Score=145.38  Aligned_cols=281  Identities=11%  Similarity=0.107  Sum_probs=111.4

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|+.++|.++++..     +++.+|..+..++.+.|++++|++.|.+.     +|..+|..++..+...|++++|++.+
T Consensus        15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            456677888888755     33358888888888888888888888543     35667888888888888888888877


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      +...+.  .++..+.+.++.+|.+. |+++++.++++      .|+..+|..+...|...|.+++|...|..+       
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------  148 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKT-NRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred             HHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence            666553  45567778888888888 88888777774      366678888888888888888888888766       


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                          ..|..++.++.+.|++++|.+.++++      .+..+|..++.+|...|+++.|......+       ..++.-..
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-------~~~ad~l~  211 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-------VVHADELE  211 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-------TTCHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-------HhCHhhHH
Confidence                15788888888888888888888877      25778888888888888888885544432       22333344


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--CCHhHHHHHHHHHHHCCCCC------ChhhHHHH
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKN--KRVHEVEKFFHEMIKNEWQP------TPLNCATA  402 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l  402 (499)
                      .++..|.+.|++++|..+++...... +-....|+-+--.|++-  ++..+.++.|..-  .+++|      +...|.-+
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~  288 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL  288 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence            67788888888888888888776543 33455566665555543  2333444433311  12222      34456666


Q ss_pred             HHHHhccCChhHHHH
Q 010830          403 ITMLLDADEPEIAIE  417 (499)
Q Consensus       403 i~~~~~~g~~~~a~~  417 (499)
                      .-.|.+.++++.|..
T Consensus       289 ~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          289 VFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHhhchHHHHHH
Confidence            666667777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=9.6e-16  Score=138.67  Aligned_cols=248  Identities=10%  Similarity=0.069  Sum_probs=164.5

Q ss_pred             hcCCchhHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS  169 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  169 (499)
                      ..|+...|+..++......+.+ ......+.++|...|+++.|+..++.   ...++..++..+...+...|+.++|++.
T Consensus        11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~   87 (291)
T 3mkr_A           11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAE   87 (291)
T ss_dssp             HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence            4577777777776543322112 34556667788888888887765543   2445666777777888888888888888


Q ss_pred             HHHHHhCCCCcCHH-HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830          170 FDVMSMHGVEQDVV-AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE  248 (499)
Q Consensus       170 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  248 (499)
                      ++++...+..|+.. .+..+-..+... |++++|+..+++     +.+...+..++..|.+.|++++|.+.|+++.+.  
T Consensus        88 l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--  159 (291)
T 3mkr_A           88 LDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--  159 (291)
T ss_dssp             HHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence            88877666555443 344444566666 888888887776     466777777777888888888888888887654  


Q ss_pred             CCCchHHhH--HHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830          249 WNPEHVLAY--ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL  326 (499)
Q Consensus       249 ~~p~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  326 (499)
                       .|++....  ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|+..+++.++..   +-+.
T Consensus       160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---p~~~  234 (291)
T 3mkr_A          160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHP  234 (291)
T ss_dssp             -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred             -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH
Confidence             45432111  223344445577777777777777652 3466667777777777777777777777777654   4466


Q ss_pred             hHHHHHHHHHHcCCChHH-HHHHHHHHHH
Q 010830          327 IMYNAVIGLLCNNDDVDN-VFRFFDQMVF  354 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~-a~~~~~~m~~  354 (499)
                      .++..++..+...|+.++ +.++++++.+
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            677777777777777654 4567777666

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=9.2e-18  Score=155.32  Aligned_cols=306  Identities=10%  Similarity=0.041  Sum_probs=145.1

Q ss_pred             hCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHH
Q 010830          125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE  204 (499)
Q Consensus       125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~  204 (499)
                      +.|++++|.+.++++.     ...+|..|+.++.+.|++++|++.|.+      .+|..+|..++..+... |++++|..
T Consensus        15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~-g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS-GNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC-CCHHHHHH
Confidence            6678999999999993     335899999999999999999999965      36777999999999988 99999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      ++++..+. .++..+.+.++.+|.+.|+++++.++++        .| +..+|+.+...|...|.+++|...|..+    
T Consensus        83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             ---------------------------CHHHHTTTTT--------CC-----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            88887764 4557889999999999999999887774        24 5569999999999999999999999977    


Q ss_pred             CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhH
Q 010830          285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTY  364 (499)
Q Consensus       285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  364 (499)
                           ..|..+..++.+.|++++|.+.+..+   +     ++.+|..++.+|...|+++.|......+.     .+..-.
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA---~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l  210 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL  210 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc---C-----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence                 47999999999999999999999988   2     68999999999999999999966555432     344445


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc--CChhHHHHHHHHHHHCCCCC------hHHHHHH
Q 010830          365 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILP------LEASANE  436 (499)
Q Consensus       365 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p------~~~~~~~  436 (499)
                      ..++..|.+.|++++|..+++..+... +-....|+-|..+|++-  +++.+..+.|..  +-+++|      +...|..
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e  287 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE  287 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence            578899999999999999999988654 44566777777777754  444444444431  222322      2467888


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHc-CC-------------ccCHHHHHHHHHHHHhcc
Q 010830          437 LLVGLRNLGRLSDVRRFAEEMLNR-RI-------------LIYEVTMHKLKKAFYNES  480 (499)
Q Consensus       437 ll~~~~~~g~~~~a~~~~~~m~~~-~~-------------~p~~~~~~~ll~~~~~~g  480 (499)
                      +...|.+.++++.|...   |.+. ..             ..+...|-..+.-|....
T Consensus       288 ~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~  342 (449)
T 1b89_A          288 LVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK  342 (449)
T ss_dssp             HHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC
Confidence            99999999999988763   3332 11             234566666666666443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=2.9e-14  Score=139.02  Aligned_cols=364  Identities=11%  Similarity=0.030  Sum_probs=224.3

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----  176 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  176 (499)
                      ......||.+...+...|++++|++.|++..+.         .+....+|+.+...|...|++++|...+++..+.    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            344567888888888889999998888776542         2345678888888899999999998888876432    


Q ss_pred             -C-CCc-CHHHHHHHHHHHHcc-CCchHHHHHHHHHHhccCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhHccCC
Q 010830          177 -G-VEQ-DVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGW---EKEGNVEEANKTFGEMVERFEW  249 (499)
Q Consensus       177 -g-~~p-~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~  249 (499)
                       + ..+ ...++..+-.++... .+++++|...|++..+..+.+...+..+...+   ...++.++|++.+++..+.   
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l---  204 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---  204 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH---
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc---
Confidence             1 111 234454444344332 15788899988887765555666666555543   3456777888888777543   


Q ss_pred             CCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC
Q 010830          250 NPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN  325 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  325 (499)
                      .|++...+..+...+..    .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..   +.+
T Consensus       205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~  280 (472)
T 4g1t_A          205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNN  280 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTC
T ss_pred             CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CCh
Confidence            66666666666555444    356778888888776644 3356677788888888899999999998888764   445


Q ss_pred             HhHHHHHHHHHHcC-------------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 010830          326 LIMYNAVIGLLCNN-------------------DDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE  386 (499)
Q Consensus       326 ~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  386 (499)
                      ..++..+...|...                   +..+.|...+++..+.. +.+...+..+...|...|++++|+..|++
T Consensus       281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~k  359 (472)
T 4g1t_A          281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQK  359 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence            66666666555321                   22456777777766642 22446677788888888888888888888


Q ss_pred             HHHCCCCCChh--hHHHHHH-HHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCc
Q 010830          387 MIKNEWQPTPL--NCATAIT-MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL  463 (499)
Q Consensus       387 ~~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~  463 (499)
                      .++....+...  .+..+.. .....|+.++|...|++..+.  .|+......         ....+.++++...+.+ +
T Consensus       360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p  427 (472)
T 4g1t_A          360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-G  427 (472)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-C
Confidence            88764332211  1222222 234678888888888887763  333222111         1223344444444433 2


Q ss_pred             cCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          464 IYEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       464 p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      .+..+|..+-..|...|+.  |++.|++.++.
T Consensus       428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          428 ADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             -CTTHHHHHHHHHHHHHHCC------------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3456677777777777777  77777776654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.70  E-value=4e-14  Score=137.98  Aligned_cols=359  Identities=13%  Similarity=0.012  Sum_probs=240.8

Q ss_pred             HHhhcCCchhHHHHHHHhcC---------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--------CCCHHHH
Q 010830           88 LQLSYDSPSSAVDFFRWAGR---------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--------VLSLPTF  150 (499)
Q Consensus        88 l~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~  150 (499)
                      +....|+.++|++.|+.+.+         ..+....+|+.+..+|...|++++|...|++..+..        .....++
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            33567999999999987643         244557899999999999999999999998876532        2345677


Q ss_pred             HHHHHHHHhc--CChhHHHHHHHHHHhCCCCcC-HHHHHHHHHH---HHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          151 ASIFDSYCGA--GKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSA---ICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       151 ~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      ..+..++...  +++++|++.|++..+.  .|+ ...+..+...   +... ++.++|++.+++..+..+.+..++..+.
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~-~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNW-PPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHS-CCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            7776666654  4799999999998876  454 4444444333   3344 7778889888887665566777777766


Q ss_pred             HHHHh----cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 010830          225 EGWEK----EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV  300 (499)
Q Consensus       225 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  300 (499)
                      ..+..    .|++++|.+.+++....   .|++...+..+...|...|++++|+..+++..+.. +-+..++..+..+|.
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            55554    46788999999998654   67788899999999999999999999999988754 224455555555443


Q ss_pred             H-------------------cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830          301 K-------------------LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS  361 (499)
Q Consensus       301 ~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  361 (499)
                      .                   .+..+.|...++...+..   +.+...+..+...|...|++++|+..|++..+....+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence            2                   123567888888887764   456778899999999999999999999999885433322


Q ss_pred             H--hHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          362 L--TYNMIFE-CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       362 ~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                      .  .+..+.. .....|+.++|+..|++.++..  |+......         ..+.+.++++...+.+ +.+..+|..+.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG  437 (472)
T 4g1t_A          370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLA  437 (472)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            1  1222222 3457899999999999998853  44332222         2334455666655543 34567899999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHcC-CccCHHH
Q 010830          439 VGLRNLGRLSDVRRFAEEMLNRR-ILIYEVT  468 (499)
Q Consensus       439 ~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~  468 (499)
                      ..|...|++++|.+.|++.++.+ ..|+..+
T Consensus       438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          438 FLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             HHHHHHHHCC---------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            99999999999999999998754 2344433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.70  E-value=4.3e-13  Score=138.55  Aligned_cols=331  Identities=13%  Similarity=0.108  Sum_probs=223.3

Q ss_pred             hcCCchhHHHHHHHhcCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      ..|.+.+|+++++.+.-..   .-+...-+.++....+. +..+..+..+......      ...+...+...|.+++|.
T Consensus       997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A          997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISNELFEEAF 1069 (1630)
T ss_pred             hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhCCCHHHHH
Confidence            3455555555555543211   12334444444444444 3343434333333111      223556677778888888


Q ss_pred             HHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830          168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF  247 (499)
Q Consensus       168 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  247 (499)
                      .+|++..     -.....+.++.   .. +++++|.++.+++     -+..+|..+..++.+.|++++|.+.|.+.    
T Consensus      1070 ~IYkKa~-----~~~~A~~VLie---~i-~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A         1070 AIFRKFD-----VNTSAVQVLIE---HI-GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred             HHHHHcC-----CHHHHHHHHHH---HH-hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence            8887752     12222233332   33 7788888887765     34778888888888888888888888554    


Q ss_pred             CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830          248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI  327 (499)
Q Consensus       248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  327 (499)
                          +|...|..++.++.+.|++++|.++|...++..  ++....+.++.+|++.+++++...+.    +     .++..
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-----~~n~a 1196 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-----GPNNA 1196 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-----CCCHH
Confidence                266678888888888888888888888766644  33334445888888888887544332    2     24556


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL  407 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  407 (499)
                      .|..+...|...|++++|..+|...         ..|..+..++++.|++++|.+.+++.      -+..+|..+-.+|.
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence            6777888888888899998888875         36888888888889988888888876      35578888888888


Q ss_pred             ccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Q 010830          408 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       408 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      ..|++..|......     +..+...+..++..|.+.|.+++|+.+++..+..+ .-....|+-|...+++..-.
T Consensus      1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence            88888888776553     33455677789999999999999999998887544 33445676777777776544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.3e-14  Score=125.55  Aligned_cols=225  Identities=12%  Similarity=0.036  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcC----HHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--VEQD----VVAVN  186 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~  186 (499)
                      ...|..+...+...|++++|++.|+++.+.. .+..+|..+...|...|++++|.+.++...+..  ..++    ..++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3466677777777788888888887777776 677777777777777778887777777765531  0111    35555


Q ss_pred             HHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830          187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR  266 (499)
Q Consensus       187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~  266 (499)
                      .+...+... |++++|...|++..+.. |+       ...+.+.|++++|.+.++++...   .|.+...|..+...+..
T Consensus        84 ~l~~~~~~~-~~~~~A~~~~~~a~~~~-~~-------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           84 RIGNAYHKL-GDLKKTIEYYQKSLTEH-RT-------ADILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHC-CC-------HHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-ccHHHHHHHHHHHHhcC-ch-------hHHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence            666666666 66666666666654421 22       12344556666666666666442   44455566666666666


Q ss_pred             CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHH
Q 010830          267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVF  346 (499)
Q Consensus       267 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  346 (499)
                      .|++++|+..|++..+.. +.+..++..+..++...|++++|...++...+..   +.+...|..+...|.+.|++++|.
T Consensus       152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHH
Confidence            666666666666655433 1234555555555666666666666666655543   334555555555555556666665


Q ss_pred             HHHHHHHH
Q 010830          347 RFFDQMVF  354 (499)
Q Consensus       347 ~~~~~m~~  354 (499)
                      ..|++..+
T Consensus       228 ~~~~~a~~  235 (258)
T 3uq3_A          228 ETLDAART  235 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.65  E-value=3.3e-12  Score=132.10  Aligned_cols=334  Identities=8%  Similarity=0.053  Sum_probs=258.4

Q ss_pred             HHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           98 AVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        98 a~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      -.++.+|...   ....|+.--...+++|...|.+.+|+++++...-.+.   .+...-+.++.+..+. +..+..+..+
T Consensus       967 RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~ 1045 (1630)
T 1xi4_A          967 RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYIN 1045 (1630)
T ss_pred             HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHH
Confidence            3455666433   2345566667888999999999999999999985543   3456677788777777 5577777776


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP  251 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p  251 (499)
                      .+...    +   ..-+-..+... |.+++|..+|++...    .....+.++.   ..|++++|.++.++..       
T Consensus      1046 kLd~~----d---~~eIA~Iai~l-glyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------- 1103 (1630)
T 1xi4_A         1046 RLDNY----D---APDIANIAISN-ELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------- 1103 (1630)
T ss_pred             Hhhhc----c---HHHHHHHHHhC-CCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC-------
Confidence            66521    1   22344555666 999999999998631    2222233322   7889999999998762       


Q ss_pred             chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHH
Q 010830          252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNA  331 (499)
Q Consensus       252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  331 (499)
                       +..+|..+..++.+.|++++|++.|.+.      -|...|..++.+|.+.|++++|.+.+...++..    ++....+.
T Consensus      1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~ 1172 (1630)
T 1xi4_A         1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETE 1172 (1630)
T ss_pred             -CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHH
Confidence             4568999999999999999999999653      467788899999999999999999999888753    44444556


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC
Q 010830          332 VIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE  411 (499)
Q Consensus       332 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  411 (499)
                      ++.+|++.+++++...+.    +   .++...|..+...|...|++++|..+|..+         ..|..+...+.+.|+
T Consensus      1173 LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A         1173 LIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred             HHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence            999999999988644332    2   356677888999999999999999999985         379999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHH
Q 010830          412 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS  489 (499)
Q Consensus       412 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~  489 (499)
                      +++|.+.+++.      .+..+|..+-.+|...|++..|......     +..+...+..++..|.+.|.+  |+.+++.
T Consensus      1237 ~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1237 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             HHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999876      3558999999999999999999886653     445677888999999999998  8888877


Q ss_pred             HHH
Q 010830          490 LER  492 (499)
Q Consensus       490 ~~~  492 (499)
                      .+.
T Consensus      1306 aL~ 1308 (1630)
T 1xi4_A         1306 ALG 1308 (1630)
T ss_pred             Hhc
Confidence            654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.8e-14  Score=123.22  Aligned_cols=211  Identities=10%  Similarity=-0.018  Sum_probs=135.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      +++...+..+...+.+.|++++|+..|++..+.++.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+-
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34555666666666667777777777776666666666666666666666666666666666665542 12233333333


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      ..+... +.           .   ...         .+...|++++|...|++..+.   .|++...|..+...+...|+
T Consensus        81 ~~~~~~-~~-----------~---~~~---------~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~  133 (217)
T 2pl2_A           81 EAYVAL-YR-----------Q---AED---------RERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGE  133 (217)
T ss_dssp             HHHHHH-HH-----------T---CSS---------HHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHh-hh-----------h---hhh---------hcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCC
Confidence            333222 00           0   000         111238899999999888654   77788888888999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHH
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFF  349 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  349 (499)
                      +++|+..|++..+..  .+...+..+..+|...|++++|...|++..+..   +.+...+..+...+.+.|++++|+..|
T Consensus       134 ~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          134 RDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC-----------
T ss_pred             hHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999888766  677888888888899999999999999888864   456788888888888889998888888


Q ss_pred             HHHH
Q 010830          350 DQMV  353 (499)
Q Consensus       350 ~~m~  353 (499)
                      ++..
T Consensus       209 ~~~~  212 (217)
T 2pl2_A          209 ALEH  212 (217)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            7654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=2e-13  Score=120.92  Aligned_cols=200  Identities=11%  Similarity=-0.008  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|..+...+...|++++|.+.|+++.+..+.+..++..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            44566666777777777777777777777666666677777777777777777777777766542 23445555555555


Q ss_pred             HccCCchHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          193 CRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      ... |++++|..+++++..  ..+.+...+..+...|.+.|++++|.+.|++..+.   .|.+...+..+...+...|++
T Consensus       116 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          116 YEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence            555 666666666666544  23334455555666666666666666666665443   344455555666666666666


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ++|...++++.+.. +.+...+..+...+.+.|+.++|.+.++.+.+.
T Consensus       192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            66666666555432 223444555555555555555555555555553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=4.6e-14  Score=121.88  Aligned_cols=199  Identities=12%  Similarity=-0.034  Sum_probs=122.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 010830          214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS  293 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  293 (499)
                      +++...+..+...+.+.|++++|...|++..+   ..|++...|..+...+.+.|++++|+..|++..+.. +-+...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            34556666666677777777777777777643   366666677777777777777777777777666543 22345556


Q ss_pred             HHHHHHHHc-----------CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 010830          294 NALDILVKL-----------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSL  362 (499)
Q Consensus       294 ~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  362 (499)
                      .+..++...           |++++|+..+++..+..   +-+...|..+...|...|++++|+..|++..+..  .+..
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~  152 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE  152 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence            666666666           77777777777777653   3356677777777777777777777777777654  5666


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830          363 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       363 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  422 (499)
                      .+..+..+|...|++++|...|+++++.. +.+...+..+...+...|++++|.+.+++.
T Consensus       153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            67777777777777777777777776643 224556666666777777777777666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=2.1e-13  Score=122.25  Aligned_cols=236  Identities=9%  Similarity=-0.032  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLS  190 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~  190 (499)
                      ...+......+...|++++|+..|++..+..+.+...+..+...|...|++++|++.++...+.+-.++  ..+|..+..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            345556677778888888888888888887766666788888888888888888888888876431222  233666666


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      .+... |++++|...|++..+..+.+..++..+...|...|++++|.+.|++..+   ..|.+...|..+...+...+++
T Consensus        83 ~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           83 ILMKK-GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHc-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence            66666 7777777777776665555666777777777777777777777777643   3565666666666233333477


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC---HhHHHHHHHHHHhcCCCCCCC------HhHHHHHHHHHHcCCC
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLND---STHAVQLWDIMVGIGFNLMPN------LIMYNAVIGLLCNNDD  341 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~  341 (499)
                      ++|++.|++..+.. +.+...+..+..++...|+   .++|...+++..+... -.|+      ..+|..+...|.+.|+
T Consensus       159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~  236 (272)
T 3u4t_A          159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYYTINRD  236 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHcCC
Confidence            77777776666543 1224445555555555555   5556666655554310 0112      1345555555555566


Q ss_pred             hHHHHHHHHHHHH
Q 010830          342 VDNVFRFFDQMVF  354 (499)
Q Consensus       342 ~~~a~~~~~~m~~  354 (499)
                      +++|.+.|++..+
T Consensus       237 ~~~A~~~~~~al~  249 (272)
T 3u4t_A          237 KVKADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666665555554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.7e-13  Score=121.73  Aligned_cols=222  Identities=15%  Similarity=0.110  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (499)
                      .|..+...+...|++++|.+.|++..+..  .+...+..+...+... |++++|...+++                    
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~--------------------   63 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK-GEYETAISTLND--------------------   63 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT-TCHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc-ccHHHHHHHHHH--------------------
Confidence            44555555555555555555555555443  4444444444444444 555555555444                    


Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCch-------HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEH-------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK  301 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  301 (499)
                                    ..+.   .|.+       ..+|..+...+.+.|++++|++.|++..+..  |+       ...+.+
T Consensus        64 --------------a~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~  117 (258)
T 3uq3_A           64 --------------AVEQ---GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTK  117 (258)
T ss_dssp             --------------HHHH---HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHH
T ss_pred             --------------HHHh---CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHH
Confidence                          4332   1111       3445555555555555555555555554432  22       123445


Q ss_pred             cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 010830          302 LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVE  381 (499)
Q Consensus       302 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  381 (499)
                      .|++++|...++.+.+..   +.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.
T Consensus       118 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  193 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAI  193 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence            556666666666666543   3345566666666666666666666666666542 224556666666666777777777


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          382 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       382 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      ..++.+++.. +.+...+..+...+...|++++|.+.++...+
T Consensus       194 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          194 ADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7776666643 22455666666667777777777777766654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=3e-13  Score=119.74  Aligned_cols=201  Identities=15%  Similarity=0.038  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+... |++++|...++++.+..+.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            3456666666777777777777777765542 23455555555555555 666666666666554444455555666666


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST  306 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  306 (499)
                      |...|++++|.+.|+++.+ .+..|.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            6666666666666666544 12344455555555555556666666666655554432 123444455555555555555


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +|...++.+.+..   +.+...+..+...+.+.|+.++|.+.++++.+
T Consensus       193 ~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          193 PARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5555555555432   23444455555555555555555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=2e-12  Score=116.02  Aligned_cols=224  Identities=11%  Similarity=0.026  Sum_probs=169.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhh
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKF  291 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~  291 (499)
                      +..++..+...|...|++++|.+.|++..+     |.+...+..+...|..    .+++++|++.|++..+.+   +...
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a   76 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG   76 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence            456667777777788888888888887765     2345567777777777    788888888888877765   5667


Q ss_pred             HHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHh
Q 010830          292 FSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLT  363 (499)
Q Consensus       292 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~  363 (499)
                      +..+...|..    .++.++|...|++..+.+     +...+..+...|..    .+++++|+..|++..+.+   +...
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a  148 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG  148 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence            7777777777    888888888888887765     66777777788877    788888888888887754   5566


Q ss_pred             HHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHH
Q 010830          364 YNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASAN  435 (499)
Q Consensus       364 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~  435 (499)
                      +..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.+++..+.+.   ...+.
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~  222 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF  222 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence            6677777777    788888888888887764   45666777777777    7888888888888877542   45666


Q ss_pred             HHHHHHHh----CCChHHHHHHHHHHHHcC
Q 010830          436 ELLVGLRN----LGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       436 ~ll~~~~~----~g~~~~a~~~~~~m~~~~  461 (499)
                      .+...|.+    .+++++|.+.+++..+.|
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            67777777    788888888888887765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=4.8e-14  Score=124.08  Aligned_cols=202  Identities=15%  Similarity=0.096  Sum_probs=112.8

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      .....|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3455666677777777777777777777777766677777777777777777777777777776543 234555555666


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      .+... |++++|..+++++.+..+.+...+..+...+.+.|++++|.+.++++.+.   .|++...+..+...+.+.|++
T Consensus       100 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          100 VYVVK-EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence            66666 66666666666665544555666666666666666666666666666443   444555566666666666666


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ++|++.++++.+.. +.+..++..+..+|.+.|+.++|.+.++++.+.
T Consensus       176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            66666666555432 123445555555555556666666665555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=4.1e-13  Score=116.43  Aligned_cols=197  Identities=10%  Similarity=-0.069  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      |..+...+...|++++|.+.|+.+.+.. +.+...+..+...+... |++++|..+++++....+.+..++..+...|..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            3334444444444444444444433321 11233333333333333 444444444433333223334444455555555


Q ss_pred             c-CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHH
Q 010830          230 E-GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA  308 (499)
Q Consensus       230 ~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a  308 (499)
                      . |++++|.+.++++.+ .+..|.+...+..+...+.+.|++++|+..++++.+.. +.+...+..+..++.+.|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            5 555555555555544 12334344455555555555555555555555544432 11234444444455555555555


Q ss_pred             HHHHHHHHhcCCCCC-CCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          309 VQLWDIMVGIGFNLM-PNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       309 ~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ...++.+.+..   + .+...+..+...+...|+.+.+..+++.+.
T Consensus       167 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          167 DYYFKKYQSRV---EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            55555544432   2 234444444444444555555555544444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=3.6e-13  Score=120.74  Aligned_cols=236  Identities=12%  Similarity=0.053  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHH
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNA  295 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l  295 (499)
                      ..+......+...|++++|.+.|++..+.   .|.+...+..+...+...|++++|++.+++..+.+-.++  ...|..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            44556677788889999999999988654   666666888888899999999999999988887432222  2347788


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 010830          296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK  375 (499)
Q Consensus       296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  375 (499)
                      ...+...|++++|.+.+++..+..   +.+..+|..+...|...|++++|...|++..+. .+.+...|..+...+...+
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~  156 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK  156 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence            888999999999999999988864   446778889999999999999999999888775 2234556666663455566


Q ss_pred             CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCC-CCCh------HHHHHHHHHHHHhCC
Q 010830          376 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE---PEIAIEIWNYILENG-ILPL------EASANELLVGLRNLG  445 (499)
Q Consensus       376 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~g  445 (499)
                      ++++|...|+++++.. +.+...+..+...+...|+   +++|...+++..+.. -.|+      ...|..+...|.+.|
T Consensus       157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (272)
T 3u4t_A          157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR  235 (272)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence            9999999999988854 2345667777777777777   888888888877531 1122      256777888899999


Q ss_pred             ChHHHHHHHHHHHHcC
Q 010830          446 RLSDVRRFAEEMLNRR  461 (499)
Q Consensus       446 ~~~~a~~~~~~m~~~~  461 (499)
                      ++++|.+.+++..+..
T Consensus       236 ~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          236 DKVKADAAWKNILALD  251 (272)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.60  E-value=4.9e-14  Score=126.60  Aligned_cols=195  Identities=14%  Similarity=0.035  Sum_probs=89.2

Q ss_pred             HHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830          185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL  264 (499)
Q Consensus       185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~  264 (499)
                      +..+...+... |++++|...|++..+..+.+..++..+...|...|++++|.+.|++..+.   .|.+...+..+...+
T Consensus        46 ~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~  121 (275)
T 1xnf_A           46 LYERGVLYDSL-GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CccccHHHHHHHHHH
Confidence            33334444444 44444444444443333334445555555555555555555555555432   333444555555555


Q ss_pred             hcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHH
Q 010830          265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDN  344 (499)
Q Consensus       265 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  344 (499)
                      .+.|++++|.+.|+++.+..  |+.......+..+...|+.++|...++......   +++...+. ++..+...++.++
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~  195 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQT  195 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CcchHHHH-HHHHHHHhcCHHH
Confidence            55555555555555554432  222222333333344455555555555444432   22222222 4444444455555


Q ss_pred             HHHHHHHHHHCCCC--C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          345 VFRFFDQMVFHGAF--P-DSLTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       345 a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      |...+++..+....  | +...+..+...|...|++++|...|+++.+
T Consensus       196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555544332100  0 123444455555555555555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.60  E-value=1e-12  Score=113.89  Aligned_cols=198  Identities=8%  Similarity=0.006  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830          184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT  263 (499)
Q Consensus       184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~  263 (499)
                      .+..+...+... |++++|...++++.+..+.+...+..+...|...|++++|.+.+++..+.   .|.+..++..+...
T Consensus        10 ~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~   85 (225)
T 2vq2_A           10 IKTQLAMEYMRG-QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---KPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence            344444444444 55555555555544433344445555555555555555555555555332   33344445555555


Q ss_pred             HhcC-CCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC
Q 010830          264 LIRG-KQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD  341 (499)
Q Consensus       264 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  341 (499)
                      +... |++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+..   +.+...+..+...|.+.|+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcCC
Confidence            5555 555555555555444211121 2334444444444455555555554444432   2234444444444444444


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010830          342 VDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       342 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  388 (499)
                      +++|...++++.+.....+...+..+...+...|+.+++..+++.+.
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44444444444432111233333333444444444444444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=3.6e-13  Score=125.98  Aligned_cols=217  Identities=8%  Similarity=-0.008  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      ..+|+.+...+.+.|++++|++.|++..+.++.+..+|+.+...+...|+ +++|++.|++..+.. +-+...|+.+-.+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            45677777777788888888888888888777777788888888888885 888888888777653 3355666666666


Q ss_pred             HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc-CCCH
Q 010830          192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQV  270 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-~~~~  270 (499)
                      +... |++++|+..|+++.+..+.+...|..+..++.+.|++++|+..|+++.+.   .|++...|+.+..++.+ .|..
T Consensus       176 ~~~~-g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          176 VEWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHc-cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence            6666 77777777777766655666677777777777777777777777777543   56666667776666666 4443


Q ss_pred             HHH-----HHHHHHHhhCCCCCCHhhHHHHHHHHHHcC--CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830          271 DEA-----LKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN  339 (499)
Q Consensus       271 ~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  339 (499)
                      ++|     ++.|++..... +-+...|..+...+.+.|  +.++|.+.+.++ +.   .+.+...+..+...|.+.
T Consensus       252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHHH
Confidence            555     24444444322 112334444444444444  344444444444 21   123344444444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=7e-13  Score=124.01  Aligned_cols=238  Identities=11%  Similarity=0.006  Sum_probs=202.1

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM  168 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  168 (499)
                      ...++.+.|+..|+.+....+-+..+|+.+..++...|+ +++|+..|+++.+.++.+...|..+..++...|++++|+.
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            456899999999999988888899999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHH
Q 010830          169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEA-----NKTFGE  242 (499)
Q Consensus       169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~  242 (499)
                      .|+++.+.. +-+...|..+-.++... |++++|+..++++.+..+.+...|+.+..++.+ .|..++|     ++.|++
T Consensus       188 ~~~kal~ld-P~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~  265 (382)
T 2h6f_A          188 FIADILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE  265 (382)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-ccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            999998764 45778888888889888 999999999999988778889999999999999 6665777     477888


Q ss_pred             HhHccCCCCchHHhHHHHHHHHhcCC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC---------CHhHHHHH
Q 010830          243 MVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN---------DSTHAVQL  311 (499)
Q Consensus       243 ~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~~~a~~~  311 (499)
                      ..+   +.|++...|+.+...+.+.|  ++++|++.+.++ +. ...+...+..+..+|.+.|         ..++|.++
T Consensus       266 Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~  340 (382)
T 2h6f_A          266 MIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL  340 (382)
T ss_dssp             HHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            755   48888999999999999988  689999999888 33 3445678888888998874         25899999


Q ss_pred             HHHH-HhcCCCCCCCHhHHHHHHHHHH
Q 010830          312 WDIM-VGIGFNLMPNLIMYNAVIGLLC  337 (499)
Q Consensus       312 ~~~~-~~~~~~~~~~~~~~~~li~~~~  337 (499)
                      ++++ .+.+   +.....|..+...+.
T Consensus       341 ~~~l~~~~D---P~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          341 CEILAKEKD---TIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHTTC---GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---chhHHHHHHHHHHHH
Confidence            9998 6643   334556665555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=5.4e-14  Score=126.29  Aligned_cols=247  Identities=9%  Similarity=-0.076  Sum_probs=140.9

Q ss_pred             CCChHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH
Q 010830          126 NGRFEQMWNAVRVMKEDGV----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR  201 (499)
Q Consensus       126 ~~~~~~a~~~~~~m~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~  201 (499)
                      .|++++|++.|+++.+...    .+..+|..+...|...|++++|.+.|++..+.. +.+..++..+...+... |++++
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~   95 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA-GNFDA   95 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc-cCHHH
Confidence            3556666666666655431    123455566666666666666666666655442 23455555565666655 66666


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      |...|++..+..+.+..++..+...|.+.|++++|.+.|+++.+.   .|++. .....+..+...|++++|...+++..
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDP-FRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCh-HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            666666655544455666666667777777777777777776543   44333 23333344455567777777776555


Q ss_pred             hCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-CCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 010830          282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLM-PNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPD  360 (499)
Q Consensus       282 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  360 (499)
                      ... .++... ..++..+...++.++|.+.++...+...... .+...+..+...|.+.|++++|...|++..+.  .|+
T Consensus       172 ~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~  247 (275)
T 1xnf_A          172 EKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH  247 (275)
T ss_dssp             HHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred             hcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence            432 122222 2355556666666777777766655320000 12467777788888888888888888888764  342


Q ss_pred             HHhHHHHHHHHHhcCCHhHHHHHH
Q 010830          361 SLTYNMIFECLIKNKRVHEVEKFF  384 (499)
Q Consensus       361 ~~~~~~ll~~~~~~g~~~~a~~~~  384 (499)
                      .  +.....++...|++++|.+.+
T Consensus       248 ~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          248 N--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             T--CHHHHHHHHHHHHHHHC----
T ss_pred             h--HHHHHHHHHHHHHHHhhHHHH
Confidence            2  223344566667777776655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=1.5e-11  Score=110.33  Aligned_cols=224  Identities=6%  Similarity=-0.020  Sum_probs=193.0

Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPNL  326 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  326 (499)
                      |.+..++..+...+...|++++|++.|++..+.+   +...+..+...|..    .+++++|...|++..+.+     +.
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~   74 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YS   74 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CH
Confidence            4467788899999999999999999999998843   55778888899999    999999999999999876     78


Q ss_pred             hHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhh
Q 010830          327 IMYNAVIGLLCN----NDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLN  398 (499)
Q Consensus       327 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~  398 (499)
                      ..+..+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a  148 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG  148 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence            889999999999    999999999999999864   77888889999999    999999999999999976   5667


Q ss_pred             HHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCccCHHHHH
Q 010830          399 CATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRILIYEVTMH  470 (499)
Q Consensus       399 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~  470 (499)
                      +..+...|..    .+++++|.+.+++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+.
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~  222 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF  222 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence            7788888887    899999999999999865   45677778888989    999999999999999875   366777


Q ss_pred             HHHHHHHh----cccc--hHHHHHHHHHHH
Q 010830          471 KLKKAFYN----ESRS--MRDIFDSLERRC  494 (499)
Q Consensus       471 ~ll~~~~~----~g~~--a~~~~~~~~~~~  494 (499)
                      .+-..|..    .++.  |.+.++..++..
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            78888887    6776  999888877654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=3.4e-13  Score=118.59  Aligned_cols=199  Identities=12%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ..+|..+...+...|++++|...|+++.+.. +.+...+..+...+... |++++|...++++.+..+.+..++..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSV-NELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456666666666777777777776666542 23455555555555555 666666666666555444455556666666


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST  306 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  306 (499)
                      |...|++++|.+.++++.+.   .|.+...+..+...+.+.|++++|++.++++.+.. +.+...+..+...+.+.|+++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            66666666666666665443   34344555555555556666666666555554432 123444455555555555555


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +|...++++.+..   +.+..++..+...|.+.|++++|.+.++++.+
T Consensus       177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            5555555555442   23344555555555555555555555555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.55  E-value=2.7e-13  Score=129.48  Aligned_cols=276  Identities=9%  Similarity=-0.015  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CcCHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEAVMSFDVMSMH----GV-EQDVVAV  185 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~  185 (499)
                      .+..+...+...|++++|+..|+++.+.++.+.    .+|..+...|...|++++|.+.+++..+.    +- .....++
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            344556677788888888888888877765444    46777778888888888888888776532    11 1123344


Q ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 010830          186 NSLLSAICRQENQTSRALEFLNRVKKI------VDPDGDSFAILLEGWEKEGN-----------------VEEANKTFGE  242 (499)
Q Consensus       186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~  242 (499)
                      ..+...+... |++++|...+++....      ......++..+...|...|+                 +++|.+.+++
T Consensus       130 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          130 GNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            5555555555 6666666666654331      11223455556666666666                 5666555555


Q ss_pred             HhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       243 ~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ..+.   .+..+....++..+...+...|++++|++.+++..+..-. .+.                             
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------  259 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-----------------------------  259 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-----------------------------
Confidence            4321   0111212334555555555555555555555544321100 000                             


Q ss_pred             CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--C---CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC--
Q 010830          319 GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA--F---PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--  391 (499)
Q Consensus       319 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--  391 (499)
                          .....++..+...|...|++++|...+++..+...  .   ....++..+...|...|++++|...+++.++..  
T Consensus       260 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          260 ----AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             ----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                00112444445555555555555555544433100  0   012344455555555555555555555554321  


Q ss_pred             ---CCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          392 ---WQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       392 ---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                         ......++..+...|...|++++|.+.+++..+
T Consensus       336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               000122455555566666666666666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.54  E-value=1.4e-12  Score=125.70  Aligned_cols=338  Identities=11%  Similarity=0.029  Sum_probs=209.9

Q ss_pred             hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-----
Q 010830           90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-----  161 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-----  161 (499)
                      ...|++++|.++|+.+.+..  ++.++..+...|...|+.   ++|++.|+...+.   +...+..|...+...+     
T Consensus        14 ~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~   88 (452)
T 3e4b_A           14 LKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA   88 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred             HhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence            44678888998888775422  334555666666677777   8898888888765   5555666666555554     


Q ss_pred             ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH---HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH--
Q 010830          162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR---ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA--  236 (499)
Q Consensus       162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a--  236 (499)
                      ++++|.++|++..+.|. ++  .+..|-..|... +..+.   +.+.+.....  ..+...+..+...|...+.++++  
T Consensus        89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~-~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQY-PHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHC-GGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHH
Confidence            77889999998887663 22  555555556554 43333   3333433332  12355666777777777755444  


Q ss_pred             --HHHHHHHhHccCCCCchHHhHHHHHHHHhcCC---CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc----CCHhH
Q 010830          237 --NKTFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKL----NDSTH  307 (499)
Q Consensus       237 --~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~  307 (499)
                        ..+++.....      ++..+..+...|.+.|   +.++|++.|++..+.| .++...+..+...|...    ++.++
T Consensus       163 ~a~~~~~~a~~~------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          163 DVERICKAALNT------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             HHHHHHHHHTTT------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             HHHHHHHHHHcC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence              4444444322      3337788888888888   8889999998888877 34444445566666544    68899


Q ss_pred             HHHHHHHHHhcCCCCCCCHhHHHHHHHH-H--HcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----CHhH
Q 010830          308 AVQLWDIMVGIGFNLMPNLIMYNAVIGL-L--CNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNK-----RVHE  379 (499)
Q Consensus       308 a~~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~  379 (499)
                      |..+|+... .|     +...+..+... |  ...+++++|++.|++..+.|   +...+..+...|. .|     ++++
T Consensus       236 A~~~~~~aa-~g-----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          236 AQALLEKIA-PG-----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             HHHHHHHHG-GG-----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             HHHHHHHHc-CC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            999999887 55     45566666665 3  45788999999999988865   5666777777666 45     8899


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHH
Q 010830          380 VEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVR  451 (499)
Q Consensus       380 a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~  451 (499)
                      |...|++.. .|   +...+..|...|..    ..++++|.++|+...+.|..   .....|-..|..    ..+.++|.
T Consensus       306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~  378 (452)
T 3e4b_A          306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGKGTKPDPLNAY  378 (452)
T ss_dssp             HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCTTBCCCHHHHH
T ss_pred             HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCCCCCCCHHHHH
Confidence            999998887 33   55666667666665    34889999999988887742   344445555553    45888999


Q ss_pred             HHHHHHHHcCC
Q 010830          452 RFAEEMLNRRI  462 (499)
Q Consensus       452 ~~~~~m~~~~~  462 (499)
                      .+++...+.|.
T Consensus       379 ~~~~~A~~~g~  389 (452)
T 3e4b_A          379 VFSQLAKAQDT  389 (452)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHCCC
Confidence            99998888874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=4.9e-12  Score=115.59  Aligned_cols=218  Identities=8%  Similarity=-0.025  Sum_probs=171.3

Q ss_pred             hhHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhc
Q 010830           96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGK-------NGRF-------EQMWNAVRVMKE-DGVLSLPTFASIFDSYCGA  160 (499)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~-~~~~~~~~~~~li~~~~~~  160 (499)
                      +.|...|+.+....+.++..|..++..+..       .|++       ++|..+|++..+ ..+.+...|..++..+.+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            567788888777778889999998888763       5886       899999999998 4677788999999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCcC-HH-HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 010830          161 GKYDEAVMSFDVMSMHGVEQD-VV-AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-KEGNVEEAN  237 (499)
Q Consensus       161 g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~  237 (499)
                      |++++|.++|++..+.  .|+ .. .|..+...+.+. |++++|..+|++..+..+.+...|........ ..|+.++|.
T Consensus       113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999875  454 33 788888888888 88999999999887755556666654444322 368999999


Q ss_pred             HHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CCC--CHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830          238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFP--TLKFFSNALDILVKLNDSTHAVQLWDI  314 (499)
Q Consensus       238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~  314 (499)
                      ++|++..+.   .|++...|..++..+.+.|++++|..+|++..... +.|  ....|..++....+.|+.+.|..++++
T Consensus       190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999888664   56677788888888888899999999988888763 344  355677777777788888888888888


Q ss_pred             HHhcC
Q 010830          315 MVGIG  319 (499)
Q Consensus       315 ~~~~~  319 (499)
                      +.+..
T Consensus       267 a~~~~  271 (308)
T 2ond_A          267 RFTAF  271 (308)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            77753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=6.8e-13  Score=122.61  Aligned_cols=274  Identities=11%  Similarity=0.007  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-CHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ-DVVAV  185 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~  185 (499)
                      .+......+...|++++|...|+++.+..+.+    ...+..+...|...|++++|.+.+++..+.    +-.+ ...++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            34455667777888888888888877766544    356777777888888888888887775432    1111 23445


Q ss_pred             HHHHHHHHccCCchHHHHHHHHHHhccC--CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 010830          186 NSLLSAICRQENQTSRALEFLNRVKKIV--DPD----GDSFAILLEGWEKEGN--------------------VEEANKT  239 (499)
Q Consensus       186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~  239 (499)
                      ..+...+... |++++|...+++..+..  ..+    ..++..+...|...|+                    +++|.+.
T Consensus        87 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           87 GNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            5555666666 77777777776653311  111    3356666677777777                    6677666


Q ss_pred             HHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC----C-CCCHhhHHHHHHHHHHcCCHhHHHHH
Q 010830          240 FGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN----C-FPTLKFFSNALDILVKLNDSTHAVQL  311 (499)
Q Consensus       240 ~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~~~~a~~~  311 (499)
                      +++..+.   .+..+.....+..+...+...|++++|.+.+++..+..    . .....++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6654321   11122223455666666666677777666666554311    0 00112444555555555666666665


Q ss_pred             HHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 010830          312 WDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKRVHEVEKF  383 (499)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~  383 (499)
                      +++..+.....   .....++..+...|...|++++|...+++..+.    +..+ ...++..+...|...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            55554321000   001334444555555555555555555544331    0000 012334444444445555555555


Q ss_pred             HHHHHH
Q 010830          384 FHEMIK  389 (499)
Q Consensus       384 ~~~~~~  389 (499)
                      +++..+
T Consensus       326 ~~~a~~  331 (338)
T 3ro2_A          326 AEKHLE  331 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.53  E-value=7.3e-13  Score=126.09  Aligned_cols=243  Identities=12%  Similarity=0.026  Sum_probs=135.9

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ-  180 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-  180 (499)
                      ......+......+...|++++|...|++..+.++.+    ..+|..+...|...|++++|...+++....    +-.| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            3445566677778888888888888888888776544    346777888888888888888888776432    1112 


Q ss_pred             CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCC--C----CHHHHHHHHHHHHhcCC--------------------HH
Q 010830          181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--P----DGDSFAILLEGWEKEGN--------------------VE  234 (499)
Q Consensus       181 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ll~~~~~~g~--------------------~~  234 (499)
                      ...++..+...+... |++++|...+++.....+  .    ...++..+...|...|+                    ++
T Consensus        86 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           86 EAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            133455555666666 777777777766543110  1    13356666667777777                    66


Q ss_pred             HHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHHcCCHh
Q 010830          235 EANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDILVKLNDST  306 (499)
Q Consensus       235 ~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~  306 (499)
                      +|.+.+++..+.   .+..+....++..+...+...|++++|+..+++..+..- .++    ..++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            666666654331   111222234555566666666666666666655443110 011    124444555555555555


Q ss_pred             HHHHHHHHHHhcCCC--CCC-CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          307 HAVQLWDIMVGIGFN--LMP-NLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      +|...+++..+....  ..+ ...++..+...|...|++++|...+++..
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            555555554432100  000 03344444455555555555555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.53  E-value=4.9e-13  Score=127.71  Aligned_cols=281  Identities=14%  Similarity=0.062  Sum_probs=177.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCchHHHHHHHHHHhcc------CCCCHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKKI------VDPDGD  218 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~  218 (499)
                      .+..+...+...|++++|.+.|++..+.+ ..+.    ..+..+...+... |++++|...+++....      ......
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            45556677888888888888888887653 1122    3555666666666 7777777777665331      122234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCCCchHHhHHHHHHHHhcCCC----------HHHHHHHHHHHhhCCC
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQ----------VDEALKFLRVMKGENC  285 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~  285 (499)
                      ++..+...|...|++++|.+.+++..+..   +-.+....++..+...|...|+          .++|...         
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------  198 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------  198 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence            55555666666666666666665543320   1112123344444444444444          0111000         


Q ss_pred             CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC
Q 010830          286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI----GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA-FPD  360 (499)
Q Consensus       286 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~  360 (499)
                                         +++|.+.+++..+.    +. ......++..+...|...|++++|...+++..+... ..+
T Consensus       199 -------------------~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          199 -------------------LTRAVEFYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -------------------HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence                               44454444443321    10 112345777788888888888888888887765210 011


Q ss_pred             ----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHhccCChhHHHHHHHHHHHC----CC
Q 010830          361 ----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-----PTPLNCATAITMLLDADEPEIAIEIWNYILEN----GI  427 (499)
Q Consensus       361 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~  427 (499)
                          ...+..+...|...|++++|...+++..+....     ....++..+...+...|++++|.+.+++..+.    +.
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence                237788889999999999999999988764210     11457788899999999999999999988752    21


Q ss_pred             -CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          428 -LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       428 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                       .....++..+...|.+.|++++|...+++..+.
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             122457778889999999999999999998865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=1.3e-12  Score=124.46  Aligned_cols=303  Identities=14%  Similarity=0.040  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----c-CCC
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKK-----I-VDP  215 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~-~~~  215 (499)
                      ....+......+...|++++|...|++..+.+ +.+    ..++..+...+... |++++|...+++...     + .+.
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhccccHH
Confidence            44556666777777777777777777776652 112    23455555566666 666666666665432     1 111


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCC--------------------HHH
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQ--------------------VDE  272 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~--------------------~~~  272 (499)
                      ...++..+...|...|++++|...+++..+...-.+   ....++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            234455555566666666666666665543210000   012244444455555555                    444


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010830          273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM  352 (499)
Q Consensus       273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  352 (499)
                      |++.+++..+.                               ..+.+ .......++..+...|...|++++|...+++.
T Consensus       166 A~~~~~~al~~-------------------------------~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (406)
T 3sf4_A          166 AVDFYEENLSL-------------------------------VTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR  213 (406)
T ss_dssp             HHHHHHHHHHH-------------------------------HHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------------------------------HHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            44444433221                               00000 00111234555555555566666666665555


Q ss_pred             HHCCC-CCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCChhHHHHHHHHH
Q 010830          353 VFHGA-FPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----PLNCATAITMLLDADEPEIAIEIWNYI  422 (499)
Q Consensus       353 ~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m  422 (499)
                      .+... .++    ...+..+...|...|++++|...+++..+.... .+    ..++..+...|...|++++|.+.+++.
T Consensus       214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            43100 011    124555555666666666666666655432100 01    334555666666666666666666665


Q ss_pred             HHC----CCCC-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCc-cCHHHHHHHHHHHHhcccc
Q 010830          423 LEN----GILP-LEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL-IYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       423 ~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~  482 (499)
                      .+.    +-.+ ...++..+...|.+.|++++|...+++..+.    +.. ....++..+...+...|+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            531    1111 1345555666666677777777776665532    111 1233455555555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=4e-12  Score=106.54  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=131.5

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      ++..|..+...|.+.|++++|++.|++..+.++.+..+|..+...|.+.|++++|...+....... .-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567788888888888899999888888888888888888888888888888888888888876653 3345555555566


Q ss_pred             HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHH
Q 010830          192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD  271 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~  271 (499)
                      +... ++++.+...+++.....+.+...+..+...|.+.|++++|++.|++..+.   .|.+..+|..+..+|.+.|+++
T Consensus        83 ~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           83 NFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHH
Confidence            6666 88888888888877766667778888888888888888888888887554   6767777888888888888888


Q ss_pred             HHHHHHHHHhhC
Q 010830          272 EALKFLRVMKGE  283 (499)
Q Consensus       272 ~a~~~~~~m~~~  283 (499)
                      +|++.|++..+.
T Consensus       159 ~A~~~~~~al~~  170 (184)
T 3vtx_A          159 EAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            888888877664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.50  E-value=6.9e-12  Score=118.54  Aligned_cols=234  Identities=7%  Similarity=-0.045  Sum_probs=166.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCCCCc---hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-C-CCHhhHH
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-F-PTLKFFS  293 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~-p~~~~~~  293 (499)
                      ....+...|++++|.+.|++..+...-.++   ...+|..+...|...|++++|+..+++..+.    +- . ....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            556677889999999999888653222222   3467888888999999999999988876642    10 1 1134677


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CC-CCCHHhHH
Q 010830          294 NALDILVKLNDSTHAVQLWDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GA-FPDSLTYN  365 (499)
Q Consensus       294 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~  365 (499)
                      .+..+|...|++++|...+++..+.....   .....++..+...|...|++++|.+.|++..+.    +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            78888899999999999998877542000   111347888889999999999999999888762    23 23356788


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHC----CCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCCh-HHHHHHH
Q 010830          366 MIFECLIKNKRVHEVEKFFHEMIKN----EWQPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPL-EASANEL  437 (499)
Q Consensus       366 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l  437 (499)
                      .+...|.+.|++++|...+++..+.    +-+.....+..+...+...|+   +++|..+++..   +..++ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            8888999999999999999888763    111122235667777888888   66666666654   33333 3456677


Q ss_pred             HHHHHhCCChHHHHHHHHHHHH
Q 010830          438 LVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       438 l~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      ...|.+.|++++|...+++..+
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7889999999999999998765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.50  E-value=6.7e-10  Score=110.92  Aligned_cols=418  Identities=9%  Similarity=0.023  Sum_probs=263.9

Q ss_pred             hHHHHHHhcCCCCCHHHHHHHHHh--hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHh
Q 010830           67 DIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKE  141 (499)
Q Consensus        67 ~l~~~l~~~~~~~~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~  141 (499)
                      .+...+...+  -+......++..  ..+..+.+..+|+.+...++.+...|...+..-.+.|+   ++.+.++|++...
T Consensus        54 ~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~  131 (679)
T 4e6h_A           54 KLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS  131 (679)
T ss_dssp             HHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence            3555555554  356666666653  34667778888877777777777888888877777777   8888888888877


Q ss_pred             CCC--CCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CcC-HHHHHHHHHHHHc---------cCCch
Q 010830          142 DGV--LSLPTFASIFDSYCGAGKY--------DEAVMSFDVMSM-HGV-EQD-VVAVNSLLSAICR---------QENQT  199 (499)
Q Consensus       142 ~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~  199 (499)
                      ..+  +++..|...+....+.++.        +.+.++|+.... .|. .++ ...|...+.....         . +++
T Consensus       132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq-~~~  210 (679)
T 4e6h_A          132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ-QRV  210 (679)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH-HHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH-hHH
Confidence            763  6777777777766665543        334466666543 365 443 4566666654432         2 345


Q ss_pred             HHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHhHcc-CC---C----------
Q 010830          200 SRALEFLNRVKKIVDPD--GDSFAILLEGWEKEGN-------------VEEANKTFGEMVERF-EW---N----------  250 (499)
Q Consensus       200 ~~a~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~-------------~~~a~~~~~~~~~~~-~~---~----------  250 (499)
                      +.+..+|+.... ++..  ..+|......-...+.             ++.|...+.++.... ++   .          
T Consensus       211 ~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~  289 (679)
T 4e6h_A          211 QYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES  289 (679)
T ss_dssp             HHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred             HHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence            667777777664 2211  2333322221111111             122333333321100 11   0          


Q ss_pred             --C-------chHHhHHHHHHHHhcCC-------CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH-HHHH
Q 010830          251 --P-------EHVLAYETFLITLIRGK-------QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV-QLWD  313 (499)
Q Consensus       251 --p-------~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~  313 (499)
                        |       .....|...+..-...+       ..+.+..+|++..... .-+...|...+..+...|+.+.|. ++++
T Consensus       290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~  368 (679)
T 4e6h_A          290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK  368 (679)
T ss_dssp             TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence              1       01234444444433332       1234455666665532 235666777777777889988996 9999


Q ss_pred             HHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC---------CCCC------------HHhHHHHHHHHH
Q 010830          314 IMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG---------AFPD------------SLTYNMIFECLI  372 (499)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~ll~~~~  372 (499)
                      +....   ++.+...|-..+...-+.|++++|.++|+++.+..         -.|+            ...|...+....
T Consensus       369 rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er  445 (679)
T 4e6h_A          369 LGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK  445 (679)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence            99875   46677788888899999999999999999987631         0132            236778888888


Q ss_pred             hcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHH
Q 010830          373 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR  451 (499)
Q Consensus       373 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  451 (499)
                      +.|+.+.|..+|..+++.-.......|...+..-.+. ++.+.|.++|+...+. +.-+...+...+......|+.+.|.
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence            8899999999999998861122334444333333344 4589999999998875 3445667778888888899999999


Q ss_pred             HHHHHHHHcCCcc--CHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Q 010830          452 RFAEEMLNRRILI--YEVTMHKLKKAFYNESRS--MRDIFDSLERR  493 (499)
Q Consensus       452 ~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~  493 (499)
                      .+|++.+.....+  ....|...++-=.+.|+.  +.++.+++.+.
T Consensus       525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999998764322  346788888888888888  66666666654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=3.9e-11  Score=109.60  Aligned_cols=225  Identities=8%  Similarity=0.036  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch-------HHH
Q 010830          130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-------SRA  202 (499)
Q Consensus       130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-------~~a  202 (499)
                      ++|..+|++.....+.+...|..++..+...++.                            +... |++       ++|
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------------------------l~~~-g~~~~~~~~~~~A   83 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------------------------LAEK-GDMNNAKLFSDEA   83 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHHT-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------------------------hhhc-cchhhcccchHHH
Confidence            5677777777777666777777777666543210                            0112 332       555


Q ss_pred             HHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHH-hHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          203 LEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       203 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      ..+|++.... .+.+...|..++..+.+.|++++|.++|++..+   +.|.+.. .|..++..+.+.|++++|..+|++.
T Consensus        84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5555555542 233444566666666666666666666666643   3444443 5666666666666666666666666


Q ss_pred             hhCCCCCCHhhHHHHHHHHH-HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CC
Q 010830          281 KGENCFPTLKFFSNALDILV-KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG-AF  358 (499)
Q Consensus       281 ~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~  358 (499)
                      .+.. +.+...|........ ..|+.+.|.++|+..++..   +.+...|..++..+.+.|++++|..+|++..+.. +.
T Consensus       161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence            5543 122333332222221 2577777777777777653   4466777777777777778888888887777752 34


Q ss_pred             C--CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010830          359 P--DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN  390 (499)
Q Consensus       359 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  390 (499)
                      |  ....|..++....+.|+.++|..+++++.+.
T Consensus       237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4  3456777777777777888887777777764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.48  E-value=1.6e-12  Score=120.04  Aligned_cols=278  Identities=13%  Similarity=0.054  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----c-CCCCHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKK-----I-VDPDGD  218 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~  218 (499)
                      .+......+...|++++|...|++..+.. +.+    ...+..+...+... |++++|...+++...     + ......
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            44555667778888888888888877653 112    24556666666666 777777777766533     1 111244


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCC--------------------HHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQ--------------------VDEALK  275 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~--------------------~~~a~~  275 (499)
                      ++..+...|...|++++|.+.+++..+...-.+   ....++..+...+...|+                    +++|.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            556666666677777777766666543211011   012245555555555555                    555555


Q ss_pred             HHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 010830          276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH  355 (499)
Q Consensus       276 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  355 (499)
                      .+++..+.                            ..   ..+. ......++..+...|...|++++|...+++..+.
T Consensus       165 ~~~~a~~~----------------------------~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  212 (338)
T 3ro2_A          165 LYEENLSL----------------------------VT---ALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  212 (338)
T ss_dssp             HHHHHHHH----------------------------HH---HHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------------------------HH---hcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            55443221                            00   0000 0112334555555555555555555555554431


Q ss_pred             ----CCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHhccCChhHHHHHHHHHHHC
Q 010830          356 ----GAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----PLNCATAITMLLDADEPEIAIEIWNYILEN  425 (499)
Q Consensus       356 ----g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  425 (499)
                          +.. .....+..+...+...|++++|...+++..+.... .+    ..++..+...+...|++++|...+++..+.
T Consensus       213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                000 01124555556666666666666666665542100 11    345556666677777777777777666531


Q ss_pred             ----CC-CChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          426 ----GI-LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       426 ----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                          +- .....++..+...|.+.|++++|...+++..+.
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                11 111335666777777788888888888777653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.47  E-value=4.3e-11  Score=115.37  Aligned_cols=335  Identities=11%  Similarity=0.013  Sum_probs=222.2

Q ss_pred             cCCc---hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCh
Q 010830           92 YDSP---SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-----RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY  163 (499)
Q Consensus        92 ~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  163 (499)
                      .|++   ++|...|+.+...   ++..+..+...+...+     ++++|++.|+...+.+.++  .+..|...|...+..
T Consensus        48 ~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~  122 (452)
T 3e4b_A           48 TRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHS  122 (452)
T ss_dssp             --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGG
T ss_pred             cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCC
Confidence            4555   8888888877644   7777888887566655     7889999999999988655  677777888776654


Q ss_pred             h---HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc----hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC---CH
Q 010830          164 D---EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ----TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG---NV  233 (499)
Q Consensus       164 ~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~  233 (499)
                      +   ++.+.+......|   +......+-..|... +.    .+.+..+++....+   +...+..+...|.+.|   +.
T Consensus       123 ~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~-~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~  195 (452)
T 3e4b_A          123 FPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ-GTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQ  195 (452)
T ss_dssp             CTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH-TCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-CCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccH
Confidence            4   4455555555444   344455555566555 53    44445555554443   3348888999999999   99


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HHcCCHh
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDI-L--VKLNDST  306 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~  306 (499)
                      ++|.+.|++..+. |  +.+...+..+...|...    +++++|+++|++.. .|   +...+..+-.. +  ...++.+
T Consensus       196 ~~A~~~~~~aa~~-g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~  268 (452)
T 3e4b_A          196 AELLKQMEAGVSR-G--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE  268 (452)
T ss_dssp             HHHHHHHHHHHHT-T--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred             HHHHHHHHHHHHC-C--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence            9999999999775 3  33555557777888766    79999999999987 43   44556666665 3  4689999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC-----ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND-----DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK----NKRV  377 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~  377 (499)
                      +|.+.|++..+.|     +...+..|...|. .|     ++++|++.|++.. .   -+...+..+...|..    ..+.
T Consensus       269 ~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~  338 (452)
T 3e4b_A          269 QMMKYLDNGRAAD-----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYP  338 (452)
T ss_dssp             HHHHHHHHHHHTT-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCH
T ss_pred             HHHHHHHHHHHCC-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCH
Confidence            9999999999887     6778888888887 44     8999999999887 3   356667777766665    3499


Q ss_pred             hHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHH
Q 010830          378 HEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF  453 (499)
Q Consensus       378 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  453 (499)
                      ++|...|+...+.|.   ......|...|..    ..+.++|..+|+...+.|.. +....-..+......++..+|..+
T Consensus       339 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~  414 (452)
T 3e4b_A          339 QKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRL  414 (452)
T ss_dssp             HHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999998773   3455566666653    46899999999999988743 322222222222333466677777


Q ss_pred             HHHHHH
Q 010830          454 AEEMLN  459 (499)
Q Consensus       454 ~~~m~~  459 (499)
                      .++..+
T Consensus       415 ~~~~~~  420 (452)
T 3e4b_A          415 VQQELA  420 (452)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=4.7e-12  Score=122.92  Aligned_cols=214  Identities=10%  Similarity=-0.007  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV-EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       198 ~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      .++++...++......+.+...+..+...|...|++ ++|.+.|++..+.   .|++...|..+...|.+.|++++|++.
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            355555566655554455667777777777777777 7777777777553   566667777777777777777777777


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHc---------CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC--------
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKL---------NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN--------  339 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------  339 (499)
                      |++..+..  |+...+..+..++...         |++++|++.+++..+..   +.+...|..+..+|...        
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhcccc
Confidence            77776654  5556666677777777         77777777777777654   34566777777777766        


Q ss_pred             CChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHH
Q 010830          340 DDVDNVFRFFDQMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE  417 (499)
Q Consensus       340 ~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  417 (499)
                      |++++|+..|++..+....  -+...|..+..+|...|++++|...|++..+.. +-+...+..+...+...|++++|.+
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777663110  255667777777777777777777777776643 1234456666666666666666665


Q ss_pred             HHH
Q 010830          418 IWN  420 (499)
Q Consensus       418 ~~~  420 (499)
                      .+.
T Consensus       314 ~~~  316 (474)
T 4abn_A          314 SKG  316 (474)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=5.2e-13  Score=122.12  Aligned_cols=173  Identities=13%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 010830          109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED--------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----  176 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  176 (499)
                      .+.+..+|..+...+...|++++|..+|+++.+.        ......++..+...|...|++++|.+.+++..+.    
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3445678888889999999999999999888773        3344567888888899999999999888887643    


Q ss_pred             --CC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          177 --GV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       177 --g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                        +- .....++..+...+... |++++|..++++..+.        .+.....+..+...|...|++++|.+.|++..+
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              11 12244555566666666 7777777776665431        122334555666666666666666666666544


Q ss_pred             cc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          246 RF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       246 ~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ..     +..|....++..+...|...|++++|.+.++++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            20     11333444556666666666666666666665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.44  E-value=8.2e-10  Score=110.29  Aligned_cols=391  Identities=8%  Similarity=0.011  Sum_probs=268.6

Q ss_pred             CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHHHH
Q 010830           94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSF  170 (499)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~  170 (499)
                      .+.+....|+......+.|...|..++..+.+.+.++.+..+|+++...-+.+...|...+..-.+.|+   ++.+.++|
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            345555556655555788999999999999999999999999999999988889999999999999999   99999999


Q ss_pred             HHHHhCC-CCcCHHHHHHHHHHHHccCCch--------HHHHHHHHHHhc--cC-CC-CHHHHHHHHHHHHh--------
Q 010830          171 DVMSMHG-VEQDVVAVNSLLSAICRQENQT--------SRALEFLNRVKK--IV-DP-DGDSFAILLEGWEK--------  229 (499)
Q Consensus       171 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~ll~~~~~--------  229 (499)
                      ++..... ..|+...|...+.-..+. ++.        +...++|+....  |. .+ +...|...+.....        
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e  205 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE  205 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence            9998763 238888888888766555 432        345577777654  44 34 45788888877543        


Q ss_pred             -cCCHHHHHHHHHHHhHccCCCCchHHhHH---HHHHHHhcC----------CCHHHHHHHHHHHhh--CCCC-------
Q 010830          230 -EGNVEEANKTFGEMVERFEWNPEHVLAYE---TFLITLIRG----------KQVDEALKFLRVMKG--ENCF-------  286 (499)
Q Consensus       230 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---~li~~~~~~----------~~~~~a~~~~~~m~~--~~~~-------  286 (499)
                       .++++.+.++|++.... .... ...+|.   .+...+...          .+++.|...+.++..  .++.       
T Consensus       206 eq~~~~~~R~iy~raL~i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~  283 (679)
T 4e6h_A          206 EQQRVQYIRKLYKTLLCQ-PMDC-LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL  283 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTS-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred             HHhHHHHHHHHHHHHHhC-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence             34578889999998642 2221 223443   333332111          122334444444321  1111       


Q ss_pred             --------C-----C---HhhHHHHHHHHHHcC-------CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChH
Q 010830          287 --------P-----T---LKFFSNALDILVKLN-------DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVD  343 (499)
Q Consensus       287 --------p-----~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  343 (499)
                              |     +   ...|...+..--..+       ..+.+..+|++.+..   ++-+...|-..+..+...|+.+
T Consensus       284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~  360 (679)
T 4e6h_A          284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDS  360 (679)
T ss_dssp             TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCT
T ss_pred             ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHH
Confidence                    1     0   123444443322222       123456788888876   4567889999888888889999


Q ss_pred             HHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC---------CCCC------------hhhHHH
Q 010830          344 NVF-RFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---------WQPT------------PLNCAT  401 (499)
Q Consensus       344 ~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~p~------------~~~~~~  401 (499)
                      +|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+++..         -.|+            ..+|..
T Consensus       361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~  439 (679)
T 4e6h_A          361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV  439 (679)
T ss_dssp             THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence            996 999998874 44456667778888889999999999999998641         0132            235777


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHC-C-CCChHHHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHh
Q 010830          402 AITMLLDADEPEIAIEIWNYILEN-G-ILPLEASANELLVGLRNL-GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  478 (499)
Q Consensus       402 li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  478 (499)
                      .+....+.|+.+.|..+|....+. + ..+  ..|...+..-.+. ++.+.|.++|+..++. ..-+...+...++-...
T Consensus       440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence            777777889999999999999875 2 223  3343333333344 5599999999999876 33456667788887777


Q ss_pred             cccc--hHHHHHHHHHHH
Q 010830          479 ESRS--MRDIFDSLERRC  494 (499)
Q Consensus       479 ~g~~--a~~~~~~~~~~~  494 (499)
                      .|+.  |+.+|+..++..
T Consensus       517 ~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            8877  999999877654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=3.3e-11  Score=100.90  Aligned_cols=166  Identities=12%  Similarity=0.063  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      +..+|..+...|.+.|++++|++.|++..+.. +-+..++..+...+... |++++|...++......+.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            44566666777777777777777777665542 23445555555556655 66666666666655544555555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS  305 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~  305 (499)
                      .+...++++.|.+.+.+..+.   .|.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence            666666666666666665433   44455556666666666666666666666555432 12344555555555555555


Q ss_pred             hHHHHHHHHHHh
Q 010830          306 THAVQLWDIMVG  317 (499)
Q Consensus       306 ~~a~~~~~~~~~  317 (499)
                      ++|.+.|++.++
T Consensus       158 ~~A~~~~~~al~  169 (184)
T 3vtx_A          158 DEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555555555554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=1.3e-11  Score=119.72  Aligned_cols=207  Identities=11%  Similarity=0.005  Sum_probs=103.5

Q ss_pred             hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010830           96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS  174 (499)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  174 (499)
                      +.++..++......+.+...|..+...+...|++ ++|++.|++..+.++.+..+|..+...|...|++++|.+.|++..
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444555544444455666666666666666666 666666666666665556666666666666666666666666665


Q ss_pred             hCCCCcCHHHHHHHHHHHHccC---------CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc--------CCHHHHH
Q 010830          175 MHGVEQDVVAVNSLLSAICRQE---------NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE--------GNVEEAN  237 (499)
Q Consensus       175 ~~g~~p~~~~~~~ll~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~  237 (499)
                      +.  .|+...+..+-..+. ..         |++++|+..|++..+..+.+...|..+..+|...        |++++|.
T Consensus       165 ~~--~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          165 TH--CKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             TT--CCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hh--CCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            54  344433333333332 22         3444444444444443333444444444444444        4444444


Q ss_pred             HHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHH
Q 010830          238 KTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV  309 (499)
Q Consensus       238 ~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~  309 (499)
                      +.|++..+.   .|   ++...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...|+.++|.
T Consensus       242 ~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          242 SAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            444444332   33   344444444444444444444444444443322 112233333444444444444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=7.1e-11  Score=111.54  Aligned_cols=233  Identities=10%  Similarity=0.016  Sum_probs=174.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC----CCCHhHHH
Q 010830          260 FLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL----MPNLIMYN  330 (499)
Q Consensus       260 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~  330 (499)
                      ....+...|++++|+..|++..+.    +-.+ ...++..+..+|...|+++.|...+++..+.....    .....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566788899999999999998764    2111 24577888899999999999999999887642001    11245788


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CC-CCChhhHH
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVFHGA-FPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EW-QPTPLNCA  400 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~  400 (499)
                      .+...|...|++++|...|++..+... ..+    ..++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999998875210 011    247888899999999999999999998872    22 33456788


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHC----CCCChHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCccC-HHHHHHH
Q 010830          401 TAITMLLDADEPEIAIEIWNYILEN----GILPLEASANELLVGLRNLGR---LSDVRRFAEEMLNRRILIY-EVTMHKL  472 (499)
Q Consensus       401 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l  472 (499)
                      .+...+...|++++|.+.+++..+.    +-......+..+...+...|+   +++|..++++.   +..++ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            8999999999999999999987752    212222335667777888898   77777777665   33333 4467788


Q ss_pred             HHHHHhcccc--hHHHHHHHHHHHh
Q 010830          473 KKAFYNESRS--MRDIFDSLERRCK  495 (499)
Q Consensus       473 l~~~~~~g~~--a~~~~~~~~~~~~  495 (499)
                      ...|...|+.  |.+.++..++..+
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8999999998  9998888876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=4.4e-12  Score=115.92  Aligned_cols=171  Identities=17%  Similarity=0.127  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc------
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------  212 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------  212 (499)
                      ...++..+...+...|++++|..+|+++.+.       .......++..+...+... |++++|..++++....      
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            4568899999999999999999999998763       2233456677777788888 9999999998886542      


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--
Q 010830          213 --VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--  283 (499)
Q Consensus       213 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--  283 (499)
                        .+....++..+...|...|++++|.+.|++..+..     +..|.....+..+...+...|++++|++.++++.+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence              12345678888888999999999999888886642     333545667888888888899999999888887653  


Q ss_pred             ----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          284 ----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       284 ----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                          +..| ...++..+..+|...|++++|...++++.+
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                2122 234667777888888888888888888775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.39  E-value=2.6e-10  Score=107.40  Aligned_cols=235  Identities=9%  Similarity=-0.051  Sum_probs=162.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CC-CC-CHhhH
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-FP-TLKFF  292 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~  292 (499)
                      .....+...|++++|...|++..+...-.+   ....++..+...|...|+++.|+..+++..+.    +- .+ ...++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345556788899999988888765322112   23457788888888899999998888876542    11 11 24466


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCCHHhHH
Q 010830          293 SNALDILVKLNDSTHAVQLWDIMVGIGFNL---MPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFPDSLTYN  365 (499)
Q Consensus       293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~  365 (499)
                      ..+..+|...|++++|.+.+++..+.....   .....+++.+...|...|++++|.+.|++..+.    +......++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            778888888999999999888877531000   112457788888899999999999999888761    2222356778


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHCC----CCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHCCCCCh-HHHHHHH
Q 010830          366 MIFECLIKNKRVHEVEKFFHEMIKNE----WQPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPL-EASANEL  437 (499)
Q Consensus       366 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l  437 (499)
                      .+...+.+.|++++|...+++..+..    -+.....+..+...+...++   +++|...++.   .+..++ ...+..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l  342 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence            88888999999999999999887742    11122345556666667777   6666666654   333332 2455667


Q ss_pred             HHHHHhCCChHHHHHHHHHHHH
Q 010830          438 LVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       438 l~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      ...|.+.|++++|...+++..+
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7888999999999999988764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.38  E-value=4.9e-11  Score=99.62  Aligned_cols=163  Identities=13%  Similarity=0.081  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC  193 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  193 (499)
                      ..|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3455555566666666666666666655555555566666666666666666666666655432 223444444555555


Q ss_pred             ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                      .. |++++|...++++.+..+.+...+..+...+.+.|++++|.+.+++..+.   .|++...+..+...+...|++++|
T Consensus        88 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           88 QV-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             Hh-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHHH
Confidence            55 55555555555554444444555555555555555555555555555432   333444555555555555555555


Q ss_pred             HHHHHHHh
Q 010830          274 LKFLRVMK  281 (499)
Q Consensus       274 ~~~~~~m~  281 (499)
                      .+.+++..
T Consensus       164 ~~~~~~~~  171 (186)
T 3as5_A          164 LPHFKKAN  171 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.33  E-value=5.5e-11  Score=120.11  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=150.4

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      +-+..+|+.+...|.+.|++++|++.|++..+..+.+..+|..+...|.+.|++++|++.|++..+.. +-+...|..+-
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            34578999999999999999999999999999988889999999999999999999999999998763 34577888888


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      ..+... |++++|++.|++..+..+.+...|+.+...|.+.|++++|++.|++..+.   .|++...|..+..++...|+
T Consensus        85 ~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           85 NTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence            899988 99999999999987766778899999999999999999999999999654   88889999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 010830          270 VDEALKFLRVMKG  282 (499)
Q Consensus       270 ~~~a~~~~~~m~~  282 (499)
                      +++|.+.+++..+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=1.9e-09  Score=101.22  Aligned_cols=239  Identities=11%  Similarity=-0.024  Sum_probs=116.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh----CCCC--C-CHh
Q 010830          221 AILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCF--P-TLK  290 (499)
Q Consensus       221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~  290 (499)
                      +.+...+...|++++|.+.+++..+...-..   ....++..+...+...|++++|...+++..+    .+..  | ...
T Consensus        57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  136 (373)
T 1hz4_A           57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  136 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence            3344444455555555555554433100000   0112234445555555666666555555432    1111  1 122


Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HhHH--
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS-LTYN--  365 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~--  365 (499)
                      .+..+...+...|++++|...+++..+......+  ...++..+...+...|++++|...+++.......++. ..+.  
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~  216 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  216 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence            3344555556666666666666665543210101  2344555666666666777776666665542111110 1111  


Q ss_pred             ---HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHH----CCCCChH-HHH
Q 010830          366 ---MIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLE-ASA  434 (499)
Q Consensus       366 ---~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~  434 (499)
                         ..+..+...|++++|...+++..+....+.   ...+..+...+...|++++|...++...+    .|..++. ..+
T Consensus       217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~  296 (373)
T 1hz4_A          217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  296 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence               122335566777777777666654321111   11344555666667777777777766543    2221222 244


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          435 NELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       435 ~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      ..+..++...|+.++|...+++...
T Consensus       297 ~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          297 LLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4455666677777777777776653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.32  E-value=2e-09  Score=101.38  Aligned_cols=307  Identities=9%  Similarity=-0.001  Sum_probs=201.5

Q ss_pred             CCHHHHHHHHHHH--HhCCChHHHHHHHHHHHhCC--C-CC--HHHHHHHHHH--HHhcCChhHHH---------HHHHH
Q 010830          111 LSPYAWNLMVDVL--GKNGRFEQMWNAVRVMKEDG--V-LS--LPTFASIFDS--YCGAGKYDEAV---------MSFDV  172 (499)
Q Consensus       111 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~--~-~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~  172 (499)
                      |+..+-+.+-..|  .+.+++++|.++++++....  . .+  ...|-.++..  ..-.+.++.+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4444555555555  77888888888888776533  1 22  2233333332  11122333333         66666


Q ss_pred             HHhCCCCcCH-HH--HHHH-HHHHHccCCchHHHHHHHHHHhccC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010830          173 MSMHGVEQDV-VA--VNSL-LSAICRQENQTSRALEFLNRVKKIV--DP----DGDSFAILLEGWEKEGNVEEANKTFGE  242 (499)
Q Consensus       173 m~~~g~~p~~-~~--~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~  242 (499)
                      +.......+. ..  |... -..+... |++++|...|++..+..  .+    ...++..+...|...|+++.|...+++
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            5432111111 11  1222 2233455 99999999999875521  12    245788889999999999999999888


Q ss_pred             HhHccCC----CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHH
Q 010830          243 MVERFEW----NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWD  313 (499)
Q Consensus       243 ~~~~~~~----~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~  313 (499)
                      ..+...-    .+....+++.+...|...|++++|++.|++..+.    +-.+ ...++..+..+|...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7653221    2223567888999999999999999999886652    2111 23467778889999999999999999


Q ss_pred             HHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC----CCCCHHhHHHHHHHHHhcCC---HhHHH
Q 010830          314 IMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG----AFPDSLTYNMIFECLIKNKR---VHEVE  381 (499)
Q Consensus       314 ~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~---~~~a~  381 (499)
                      +..+     ..   +....++..+...|.+.|++++|...+++..+..    .......+..+...+...++   +++|+
T Consensus       247 ~al~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al  323 (378)
T 3q15_A          247 KAAKVSREKVP---DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL  323 (378)
T ss_dssp             HHHHHHHHHCG---GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHhhCC---hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            8886     32   3347788889999999999999999999988632    11122345555556666777   77777


Q ss_pred             HHHHHHHHCCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          382 KFFHEMIKNEWQP-TPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       382 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      .+++..   +..+ ....+..+...|...|++++|.+.|++..+
T Consensus       324 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          324 SYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777652   2222 234566788899999999999999998764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.31  E-value=2.6e-09  Score=100.29  Aligned_cols=205  Identities=13%  Similarity=-0.020  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHcc---CCC--CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC--C--CHh
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERF---EWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF--P--TLK  290 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~--p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~  290 (499)
                      +..+...+...|++++|.+.+++..+..   +..  |.....+..+...+...|++++|...+++..+..-.  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            4455566666777777776666654421   111  323345555666777777777777777765542211  1  123


Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH----HHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHh
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN----AVIGLLCNNDDVDNVFRFFDQMVFHGAFPD---SLT  363 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~  363 (499)
                      ++..+...+...|++++|...+++................    ..+..+...|++++|...+++.......+.   ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            4556666777778888887777776643100001111111    223346677888888888777655321111   224


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          364 YNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPTP-LNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      +..+...+...|++++|...++...+.    +..++. ..+..+..++...|+.++|...+++..+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            556667778888888888888777543    211122 2455566777788888888888887664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=3.9e-10  Score=94.05  Aligned_cols=162  Identities=14%  Similarity=-0.005  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL  299 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  299 (499)
                      +..+...+...|++++|.+.++++.+   ..|.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYD---ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCC---TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH---hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            44444555555555555555555532   234444555555555555555555555555554432 12344455555555


Q ss_pred             HHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhH
Q 010830          300 VKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHE  379 (499)
Q Consensus       300 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  379 (499)
                      ...|++++|.+.++++.+..   +.+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            55566666666665555542   3345555555666666666666666666655532 2234555556666666666666


Q ss_pred             HHHHHHHHHH
Q 010830          380 VEKFFHEMIK  389 (499)
Q Consensus       380 a~~~~~~~~~  389 (499)
                      |...++.+.+
T Consensus       163 A~~~~~~~~~  172 (186)
T 3as5_A          163 ALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666665554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=9.1e-10  Score=95.57  Aligned_cols=208  Identities=11%  Similarity=-0.012  Sum_probs=157.5

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL  188 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  188 (499)
                      +.|+..|......+...|++++|++.|+...+..+ ++...+..+..++...|++++|++.|++..+.. +-+...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            34678888888999999999999999999998886 788888889999999999999999999988763 2345667777


Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHH
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVDPDG-------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYET  259 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~  259 (499)
                      ...+... |++++|...+++..+..+.+.       ..|..+...+...|++++|.+.|++..   ...|+  +...|..
T Consensus        83 ~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~  158 (228)
T 4i17_A           83 SAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred             HHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHH
Confidence            7888888 999999999999877656666       568888888999999999999999995   45887  6778888


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHH
Q 010830          260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI  333 (499)
Q Consensus       260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li  333 (499)
                      +..+|...|     ...++++...+ ..+...|....  ....+.+++|...+++..+..   +.+..+...+-
T Consensus       159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~  221 (228)
T 4i17_A          159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHH
Confidence            888886544     34455555443 22334444333  234566899999999999864   33444444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.25  E-value=4.2e-10  Score=113.73  Aligned_cols=165  Identities=16%  Similarity=0.171  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA  295 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  295 (499)
                      +...|+.+...|.+.|++++|++.|++..+.   .|++..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4566777777777777777777777777543   66667777777777777777777777777766643 1235667777


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhc
Q 010830          296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKN  374 (499)
Q Consensus       296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  374 (499)
                      ..+|.+.|++++|++.|++.++..   +-+...|+.+...|.+.|++++|++.|++..+.  .| +...|..+..++...
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence            777777777777777777777654   345677777777777777777777777777763  33 346677777777777


Q ss_pred             CCHhHHHHHHHHHHH
Q 010830          375 KRVHEVEKFFHEMIK  389 (499)
Q Consensus       375 g~~~~a~~~~~~~~~  389 (499)
                      |++++|.+.++++++
T Consensus       159 g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          159 CDWTDYDERMKKLVS  173 (723)
T ss_dssp             TCCTTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            777777777766554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=1.5e-10  Score=103.87  Aligned_cols=207  Identities=8%  Similarity=0.015  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC------C-
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------N-  284 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~-  284 (499)
                      ..++..+...|...|++++|...+++..+..     +-.|....++..+...|...|++++|++.+++..+.      . 
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            4456666666666677776666666665421     223434556666677777777777777776665542      1 


Q ss_pred             CCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc-----CCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----
Q 010830          285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI-----GFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----  355 (499)
Q Consensus       285 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----  355 (499)
                      ......++..+...|...|++++|...+++..+.     +.+.+....++..+...|...|++++|...+++..+.    
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            1122445566666677777777777777666653     0001123456667777777777777777777766542    


Q ss_pred             ---CCCCCHH-hHHHHHHHHHhcCCHhH------HHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          356 ---GAFPDSL-TYNMIFECLIKNKRVHE------VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       356 ---g~~p~~~-~~~~ll~~~~~~g~~~~------a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                         ...+... .|..+...+...+....      +...++.... ..+....++..+...|...|++++|.+++++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               1122222 22222222222222211      1111111110 1112234566777777778888888888777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=1.6e-10  Score=103.76  Aligned_cols=65  Identities=11%  Similarity=0.167  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc-----CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      ..++..+...|...|++++|.+.|++..+..     +..|....++..+...|...|++++|...+++..
T Consensus       127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555555553310     1123234445555555555555555555555544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.21  E-value=3.6e-09  Score=91.74  Aligned_cols=204  Identities=9%  Similarity=0.029  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      .++..+......+...|++++|.+.|+...+..-.++...+..+..++... |++++|+..+++..+..+.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            356788899999999999999999999998775337777777788888888 9999999999998876677888999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhHccCCCCchH-------HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC---HhhHHH
Q 010830          225 EGWEKEGNVEEANKTFGEMVERFEWNPEHV-------LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSN  294 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~  294 (499)
                      ..|...|++++|.+.|++..+.   .|++.       ..|..+...+...|++++|++.|++..+..  |+   ...+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~  158 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS  158 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence            9999999999999999999764   66666       558888889999999999999999988764  54   456666


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM  366 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  366 (499)
                      +..+|...     +..+++.+...+   ..+...|.....  ...+.+++|+..|++..+.  .|+......
T Consensus       159 l~~~~~~~-----~~~~~~~a~~~~---~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~  218 (228)
T 4i17_A          159 LGVLFYNN-----GADVLRKATPLA---SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQ  218 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHHGGGT---TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHhcc---cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            66666544     344456666553   234444544433  3346689999999999884  455443333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=3.5e-09  Score=95.71  Aligned_cols=131  Identities=11%  Similarity=-0.004  Sum_probs=79.7

Q ss_pred             HhHHHHHHHHHHcC-CChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChh--
Q 010830          326 LIMYNAVIGLLCNN-DDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--  397 (499)
Q Consensus       326 ~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--  397 (499)
                      ..+++.+...|... |++++|+..|++..+.... .+    ..++..+...+.+.|++++|...|++..+........  
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            34566677777775 8888888777776652100 01    2456677777888888888888888877754222211  


Q ss_pred             ----hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChH------HHHHHHHHHHH--hCCChHHHHHHHHHHH
Q 010830          398 ----NCATAITMLLDADEPEIAIEIWNYILENGILPLE------ASANELLVGLR--NLGRLSDVRRFAEEML  458 (499)
Q Consensus       398 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~m~  458 (499)
                          .|..+..++...|++++|...|++..+  +.|+.      ..+..++.++.  ..+++++|+..|+++.
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence                455666677777888888888877664  22221      12334455553  3456777777776554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=9.4e-10  Score=111.63  Aligned_cols=174  Identities=17%  Similarity=0.038  Sum_probs=119.7

Q ss_pred             hhcCCchhHHHHHHHhc--------CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Q 010830           90 LSYDSPSSAVDFFRWAG--------RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG  161 (499)
Q Consensus        90 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g  161 (499)
                      ...+++++|++.|+.+.        ...+.+...|..+...+.+.|++++|++.|++..+.++.+...|..+..+|...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            45677777777777766        4455666777777777777777777777777777777767777777777777777


Q ss_pred             ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       162 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                      ++++|.+.|++..+.. +-+...+..+-.++.+. |++++ +..|++..+..+.+...|..+..+|.+.|++++|.+.|+
T Consensus       482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777776553 23455666666666666 77777 777777666555666777777777777777777777777


Q ss_pred             HHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          242 EMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       242 ~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      +..   ...|++...|..+..++...++
T Consensus       559 ~al---~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          559 EVP---PTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TSC---TTSTTHHHHHHHHHHHTC----
T ss_pred             hhc---ccCcccHHHHHHHHHHHHccCC
Confidence            763   4466666667666666655444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=4.6e-09  Score=82.20  Aligned_cols=127  Identities=18%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      .|..+...+...|++++|.++|+++.+.++.+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            345555556666666666666666655554455555555555555666666666665554432 2233334444444444


Q ss_pred             cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      . |++++|..+++++.+..+.+..++..+...+.+.|++++|.+.++++
T Consensus        82 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           82 Q-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             h-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            4 44444444444443333333344444444444444444444444444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=4.4e-09  Score=95.03  Aligned_cols=161  Identities=13%  Similarity=-0.021  Sum_probs=84.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHccCCchHHHHHHHHHHhccC----CC--CHHHHHHHH
Q 010830          156 SYCGAGKYDEAVMSFDVMSMH----GVEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DP--DGDSFAILL  224 (499)
Q Consensus       156 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~ll  224 (499)
                      .|...|++++|.+.|++..+.    |-.++ ..+|+.+-..|... |++++|+..+++.....    .+  -..+++.+.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445556666666665554322    11111 23444555555555 55555555555443200    00  123556666


Q ss_pred             HHHHhc-CCHHHHHHHHHHHhHccCCCC---chHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH------hhHHH
Q 010830          225 EGWEKE-GNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL------KFFSN  294 (499)
Q Consensus       225 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~  294 (499)
                      ..|... |++++|...|++..+...-..   ....+++.+...+.+.|++++|+..|++..+.......      ..|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            667764 777777777776644210000   00235666666777777777777777766654322111      13455


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHh
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      +..++...|+++.|...+++..+
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            55666666777777766666655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.10  E-value=6.4e-09  Score=92.28  Aligned_cols=135  Identities=12%  Similarity=0.026  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcC-HHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD-VVA  184 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~  184 (499)
                      +.+...+-.+...+.+.|++++|+..|+.+.+..+.+   ...+..+..+|.+.|++++|...|+...+..- .|. ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            4455666667777777788888888888777776544   56777777777788888888888877766421 112 334


Q ss_pred             HHHHHHHHHc--------cCCchHHHHHHHHHHhccCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 010830          185 VNSLLSAICR--------QENQTSRALEFLNRVKKIVDPDGDSF-----------------AILLEGWEKEGNVEEANKT  239 (499)
Q Consensus       185 ~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~g~~~~a~~~  239 (499)
                      +..+..++..        . |++++|...|+++.+..+.+....                 ..+...|.+.|++++|...
T Consensus        92 ~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            4445555555        5 777777777777655433333333                 3334445555555555555


Q ss_pred             HHHHhH
Q 010830          240 FGEMVE  245 (499)
Q Consensus       240 ~~~~~~  245 (499)
                      |+++.+
T Consensus       171 ~~~~l~  176 (261)
T 3qky_A          171 YEAVFD  176 (261)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.07  E-value=9.2e-09  Score=80.46  Aligned_cols=129  Identities=18%  Similarity=0.280  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (499)
                      .|..+...+...|++++|.++++.+.+.+ +.+...+..+...+... |++++|..+++++....+.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            45666667777777777777777766543 23455555555666666 66666666666665544445556666666666


Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ..|++++|.+.++++.+.   .|.+...+..+...+.+.|++++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666666443   343445555666666666666666666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=4e-09  Score=94.98  Aligned_cols=175  Identities=10%  Similarity=-0.038  Sum_probs=127.0

Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 010830          100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE  179 (499)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  179 (499)
                      .+.+++....+.+...+..+...+.+.|++++|...|++..+..+.+...+..+...+.+.|++++|.+.++.....  .
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~  181 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--D  181 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--h
Confidence            33344433345566778888888899999999999999999888888888999999999999999999999888655  4


Q ss_pred             cCHHHHHHHHHH-HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch--HHh
Q 010830          180 QDVVAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLA  256 (499)
Q Consensus       180 p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~  256 (499)
                      |+.......... +... ++.+.|...+++.....+.+...+..+...+...|++++|.+.|+++.+.   .|++  ...
T Consensus       182 p~~~~~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a  257 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQT  257 (287)
T ss_dssp             CSHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHH
T ss_pred             cchHHHHHHHHHHHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchH
Confidence            555443333332 4444 66667777777766656667777777778888888888888888777664   4433  556


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          257 YETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       257 ~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                      +..++..+...|+.++|...|++.
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHH
Confidence            777777777777777777766654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.01  E-value=1.1e-06  Score=85.20  Aligned_cols=358  Identities=8%  Similarity=-0.022  Sum_probs=221.2

Q ss_pred             HHHHHHHHHhh-cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhC---CCCCHHHHHHHHH
Q 010830           81 PDLVHEVLQLS-YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKED---GVLSLPTFASIFD  155 (499)
Q Consensus        81 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~---~~~~~~~~~~li~  155 (499)
                      ...+...+... .++.+.+..+|+.... ..|+...|...++...+.+. .+....+|+.....   ++.+...|...+.
T Consensus        15 R~vyer~l~~~P~~~~e~~~~iferal~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~   93 (493)
T 2uy1_A           15 SAIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE   93 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence            44555555522 3789999999998776 44699999999998888763 45677888877764   3567788988888


Q ss_pred             HHH----hcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc------------CCchHHHHHHHHHHhccCC-CCHH
Q 010830          156 SYC----GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ------------ENQTSRALEFLNRVKKIVD-PDGD  218 (499)
Q Consensus       156 ~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------~~~~~~a~~~~~~~~~~~~-~~~~  218 (499)
                      .+.    ..|+++.+.++|++.+......-...|......-...            .+.+..|..+++.+....+ .+..
T Consensus        94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~  173 (493)
T 2uy1_A           94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK  173 (493)
T ss_dssp             HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred             HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence            765    3467889999999998743211122222221111000            0223344555554433211 2344


Q ss_pred             HHHHHHHHHHhcC--C-----HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhh
Q 010830          219 SFAILLEGWEKEG--N-----VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF  291 (499)
Q Consensus       219 ~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  291 (499)
                      .|...+..-...+  -     .+.+..+|++....   .|.+...|...+..+.+.|+.++|.++|++....   |....
T Consensus       174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~  247 (493)
T 2uy1_A          174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred             HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence            5655555432211  1     34567788888764   3546678888888899999999999999998876   44332


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCC----------CCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830          292 FSNALDILVKLNDSTHAVQLWDIMVGIGF----------NLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS  361 (499)
Q Consensus       292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  361 (499)
                      +..   .|....+.++.   ++.+.+.-.          .......+|...+..+.+.++.+.|..+|++. .. ...+.
T Consensus       248 l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~  319 (493)
T 2uy1_A          248 LSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGP  319 (493)
T ss_dssp             HHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCH
T ss_pred             HHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCCh
Confidence            221   23322222222   222222100          00112355677777777778899999999988 32 11233


Q ss_pred             HhHHHHHHHHHh-cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHH
Q 010830          362 LTYNMIFECLIK-NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG  440 (499)
Q Consensus       362 ~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  440 (499)
                      ..|......-.. .++.+.|..+|+..++.. +-+...+...++...+.|+.+.|..+|+.+.     .....|...+..
T Consensus       320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f  393 (493)
T 2uy1_A          320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY  393 (493)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            344322221122 336899999999988753 2234445566776778899999999999872     256788888887


Q ss_pred             HHhCCChHHHHHHHHHHHH
Q 010830          441 LRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       441 ~~~~g~~~~a~~~~~~m~~  459 (499)
                      -...|+.+.+.++++++.+
T Consensus       394 E~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          394 EFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHSCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            7788999999998888764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.01  E-value=2.9e-08  Score=85.84  Aligned_cols=182  Identities=7%  Similarity=-0.029  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----HH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AV  185 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~  185 (499)
                      ...+..+...+.+.|++++|+..|+.+.+..+.+   ...+..+..+|.+.|++++|+..|+++.+.  .|+..    .+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            4455556666777788888888887777655422   346777777777788888888888777654  23221    22


Q ss_pred             HHHHHHHHc------------------cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc
Q 010830          186 NSLLSAICR------------------QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF  247 (499)
Q Consensus       186 ~~ll~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  247 (499)
                      -.+..++..                  . |+.++|...|+++.+..+.+...+.....              ...+... 
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~--------------l~~~~~~-  145 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKR--------------LVFLKDR-  145 (225)
T ss_dssp             HHHHHHHHHHHC--------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------------HHHHHHH-
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHH--------------HHHHHHH-
Confidence            222222222                  2 55666666666665544333333221110              0000000 


Q ss_pred             CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830          248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIG  319 (499)
Q Consensus       248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  319 (499)
                           .......+...|.+.|++++|+..|+++.+..  |+    ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 00112345566667777777777777766543  22    2345666677777777777777777666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=2.2e-07  Score=82.53  Aligned_cols=145  Identities=10%  Similarity=0.080  Sum_probs=72.8

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      |+..|+++.....++..++..+..++...|++++|++++.+.... +-.+.+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555544332344444455666666666666666666665332 2112455566666666666666666666666665


Q ss_pred             hCCCCC-----CHhhHHHHHHHHHH--cC--CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010830          282 GENCFP-----TLKFFSNALDILVK--LN--DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQM  352 (499)
Q Consensus       282 ~~~~~p-----~~~~~~~li~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  352 (499)
                      +..  |     +..+...+..++..  .|  +...|..+|+++.+..    |+..+-..++.++.+.|++++|.+.++.+
T Consensus       164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~----p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF----PTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS----CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC----CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            532  3     23344444444221  12  5555555555554432    33222222233455555555555555544


Q ss_pred             H
Q 010830          353 V  353 (499)
Q Consensus       353 ~  353 (499)
                      .
T Consensus       238 ~  238 (310)
T 3mv2_B          238 L  238 (310)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.00  E-value=3.5e-08  Score=87.49  Aligned_cols=97  Identities=16%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCC---CCHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGD  218 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~  218 (499)
                      +...+-.+...+.+.|++++|.+.|+.+.+.  .|+    ...+..+..++... |++++|...|++..+..+   ....
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3444455555555555555555555555443  121    23333444444444 555555555554433211   1123


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHhH
Q 010830          219 SFAILLEGWEK--------EGNVEEANKTFGEMVE  245 (499)
Q Consensus       219 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~  245 (499)
                      .+..+..++.+        .|++++|...|+++.+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  125 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID  125 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            34444444444        4445555555544443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=2.8e-08  Score=84.73  Aligned_cols=124  Identities=8%  Similarity=-0.058  Sum_probs=58.2

Q ss_pred             HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830          188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG  267 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~  267 (499)
                      +-..+.+. |++++|...|++..+..+.+...+..+...|...|++++|...|++..+.   .|++..+|..+...|...
T Consensus        60 lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           60 LALAYKKN-RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence            34444444 55555555555554444445555555666666666666666666665432   555555555555555443


Q ss_pred             CC--HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          268 KQ--VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       268 ~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      |+  .+.+...++....  ..|....+.....++...|++++|...|++.++
T Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            32  2223333332221  111111222223333444555555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.98  E-value=3.3e-08  Score=84.27  Aligned_cols=111  Identities=11%  Similarity=0.145  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH----------------HHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET----------------FLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      +......+.+.|++++|...|++..+.   .|++...|..                +..+|.+.|++++|+..|++..+.
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            334455666788888888888887654   5655555554                444455555555555555444443


Q ss_pred             CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH
Q 010830          284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC  337 (499)
Q Consensus       284 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~  337 (499)
                      . +-+...+..+..++...|++++|...|++.++..   +.+...|..+...|.
T Consensus        84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYY  133 (208)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence            2 1133444444444445555555555555544432   223444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.98  E-value=7.8e-09  Score=104.88  Aligned_cols=153  Identities=14%  Similarity=-0.023  Sum_probs=80.4

Q ss_pred             HhCCChHHHHHHHHHHH--------hCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 010830          124 GKNGRFEQMWNAVRVMK--------EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ  195 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  195 (499)
                      ...|++++|++.|++..        +..+.+...+..+...|...|++++|++.|++..+.. +-+...|..+-.++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            45566666666666665        4444455556666666666666666666666555432 22334444444445555


Q ss_pred             CCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHH
Q 010830          196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK  275 (499)
Q Consensus       196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~  275 (499)
                       |++++|...|++..+..+.+...|..+...|.+.|++++ .+.|++..+.   .|++...|..+..++.+.|++++|++
T Consensus       481 -g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 -GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             -TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence             555555555555544434444555555555555555555 5555555332   44444455555555555555555555


Q ss_pred             HHHHHhh
Q 010830          276 FLRVMKG  282 (499)
Q Consensus       276 ~~~~m~~  282 (499)
                      .|++..+
T Consensus       556 ~~~~al~  562 (681)
T 2pzi_A          556 TLDEVPP  562 (681)
T ss_dssp             HHHTSCT
T ss_pred             HHHhhcc
Confidence            5554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.96  E-value=8.1e-08  Score=85.28  Aligned_cols=179  Identities=11%  Similarity=0.073  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHccCCchHHHHHHHHHHh
Q 010830          132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQDVVAVNSLLSAICRQENQTSRALEFLNRVK  210 (499)
Q Consensus       132 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~  210 (499)
                      |+..|++....+.++..++..+..++...|++++|++++......|- .-+...+..++..+.+. |+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence            45555555544444444445555556666666666666665544331 12344455555555555 66666666666554


Q ss_pred             ccCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          211 KIVDP-----DGDSFAILLEGWE--KEG--NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       211 ~~~~~-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      +. .|     +..+...++.+++  ..|  ++.+|..+|+++.+.   .| +..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FP-TWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42 22     2333334443322  122  566666666666443   23 21122233335666666666666665544


Q ss_pred             hC-----CC----CCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          282 GE-----NC----FPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       282 ~~-----~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +.     ..    +-+..++..+|......|+  .|.+++.++.+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            32     00    1234444445544555554  556666666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=3.8e-08  Score=88.55  Aligned_cols=167  Identities=11%  Similarity=0.017  Sum_probs=124.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 010830          214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS  293 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  293 (499)
                      +.+...+..+...+.+.|++++|...|++..+.   .|++...+..+...+.+.|++++|...+++.....  |+.....
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~  188 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQG  188 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHH
Confidence            455666777888888889999999999888654   77788888888889999999999998888776543  4443322


Q ss_pred             H-HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHH
Q 010830          294 N-ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECL  371 (499)
Q Consensus       294 ~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~  371 (499)
                      . ....+...++.+.|...+++..+..   +.+...+..+...|...|++++|+..|.++.+.... .+...+..+...+
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence            2 2233556677778888888888764   557788888888888888888888888888874322 1255678888888


Q ss_pred             HhcCCHhHHHHHHHHHH
Q 010830          372 IKNKRVHEVEKFFHEMI  388 (499)
Q Consensus       372 ~~~g~~~~a~~~~~~~~  388 (499)
                      ...|+.++|...+++.+
T Consensus       266 ~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          266 AALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHcCCCCcHHHHHHHHH
Confidence            88888888888777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.96  E-value=4e-09  Score=87.33  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHc
Q 010830          116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICR  194 (499)
Q Consensus       116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~  194 (499)
                      +..+...+.+.|++++|...|++..+..+.+...+..+...+...|++++|...|+...+.  .|+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            4445566677777777777777776666666677777777777777777777777766543  2333222211111 111


Q ss_pred             cCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcCCCHHH
Q 010830          195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDE  272 (499)
Q Consensus       195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~  272 (499)
                      . +....|...+++..+..+.+...+..+...+...|++++|...|+++.+.   .|+  +...+..+...+...|+.++
T Consensus        87 ~-~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           87 Q-AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             H-HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             h-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCc
Confidence            1 11122344444433333334444444444444444444444444444332   221  12234444444444444444


Q ss_pred             HHHHHH
Q 010830          273 ALKFLR  278 (499)
Q Consensus       273 a~~~~~  278 (499)
                      |...|+
T Consensus       163 A~~~y~  168 (176)
T 2r5s_A          163 IASKYR  168 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.95  E-value=1.8e-08  Score=83.37  Aligned_cols=163  Identities=8%  Similarity=0.010  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI  298 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  298 (499)
                      .+..+...+.+.|++++|...|++..+.   .|++...+..+...+.+.|++++|+..+++.....  |+...+......
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~   82 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL   82 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence            3455667777888888888888887543   67777788888888888888888888888766543  333322221111


Q ss_pred             -HHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCC
Q 010830          299 -LVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFP-DSLTYNMIFECLIKNKR  376 (499)
Q Consensus       299 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~  376 (499)
                       +...+....|...+++..+..   +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             HHHhhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence             112223334677777777653   3457777777788888888888888888777643322 24567777777777788


Q ss_pred             HhHHHHHHHHHHH
Q 010830          377 VHEVEKFFHEMIK  389 (499)
Q Consensus       377 ~~~a~~~~~~~~~  389 (499)
                      .++|...|++.+.
T Consensus       160 ~~~A~~~y~~al~  172 (176)
T 2r5s_A          160 GNAIASKYRRQLY  172 (176)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            8877777776543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=1.8e-07  Score=79.88  Aligned_cols=175  Identities=7%  Similarity=-0.072  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC----ChHHHHHH
Q 010830          273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND----DVDNVFRF  348 (499)
Q Consensus       273 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~  348 (499)
                      |++.|++..+.|   +...+..+-..|...++.++|...|++..+.|     +...+..|...|.. +    ++++|++.
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            344444444433   33444444445555555555555555555544     34444455555544 3    55555555


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhc----cCChhHHHHHH
Q 010830          349 FDQMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLD----ADEPEIAIEIW  419 (499)
Q Consensus       349 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~  419 (499)
                      |++..+.|   +...+..+...|..    .+++++|...|++..+.+.. .+...+..|...|..    .+++++|.++|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            55555432   33444444444444    45555666666555554411 013444455555544    45566666666


Q ss_pred             HHHHHCCCCChHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHcC
Q 010830          420 NYILENGILPLEASANELLVGLRNL-G-----RLSDVRRFAEEMLNRR  461 (499)
Q Consensus       420 ~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~  461 (499)
                      ++..+.+  .+...+..|-..|... |     ++++|..++++..+.|
T Consensus       153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            6655541  1222344444444432 2     5666666666665555

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=4.1e-09  Score=84.64  Aligned_cols=141  Identities=16%  Similarity=-0.006  Sum_probs=72.1

Q ss_pred             HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHH
Q 010830          123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA  202 (499)
Q Consensus       123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a  202 (499)
                      +...|++++|+..+.......+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+-..+... |++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE-ENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CchHHH
Confidence            3344555555555555544433333344455555555555555555555554432 22344455555555555 555555


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830          203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT-FGEMVERFEWNPEHVLAYETFLITLIRGK  268 (499)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~p~~~~~~~~li~~~~~~~  268 (499)
                      ...|++..+..+.+..++..+...|.+.|++++|.+. +++..+   +.|++..+|......+...|
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence            5555555444444555566666666666665554433 344433   25555555555555544444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=1.7e-06  Score=77.60  Aligned_cols=170  Identities=7%  Similarity=-0.034  Sum_probs=84.0

Q ss_pred             chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhCCCCCHHHHHHHHHHH----Hhc---CChhH
Q 010830           95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGA---GKYDE  165 (499)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~---g~~~~  165 (499)
                      .++|++.++.+....+-+..+|+.--.++...|  +++++++.++.+...++.+..+|+.--..+    ...   +++++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            345666666665555555566666666666665  666666666666666655555555544444    333   45555


Q ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH--HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 010830          166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN------VEEAN  237 (499)
Q Consensus       166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~  237 (499)
                      ++++++.+.+.. +-+-.+|+.-.-.+.+. |.++  +++++++++.+..+.|...|+.......+.|.      +++++
T Consensus       129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl  206 (306)
T 3dra_A          129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL  206 (306)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            555555554432 23344444443333333 4444  44444444444444444444444444444333      44444


Q ss_pred             HHHHHHhHccCCCCchHHhHHHHHHHHhcCCC
Q 010830          238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQ  269 (499)
Q Consensus       238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~  269 (499)
                      +.+++....   .|.|...|+.+-..+.+.|+
T Consensus       207 ~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          207 NYVKDKIVK---CPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHH---CSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh---CCCCccHHHHHHHHHHhcCC
Confidence            444444332   44444444444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=2.8e-08  Score=98.91  Aligned_cols=153  Identities=14%  Similarity=-0.019  Sum_probs=121.8

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      .|+.++|.+.|+.+.+..+.+...|..+...+.+.|++++|.+.|++..+.++.+..+|..+...|...|++++|.+.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            36778899999988777777899999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhHc
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---GNVEEANKTFGEMVER  246 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~  246 (499)
                      +..+.. +.+...+..+...+... |++++|.+.+++..+..+.+...+..+...+...   |+.++|.+.+++..+.
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            998763 44577888888888888 9999999999998876677888999999999999   9999999999999765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.92  E-value=9e-07  Score=79.36  Aligned_cols=228  Identities=8%  Similarity=0.050  Sum_probs=164.7

Q ss_pred             HHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HccC
Q 010830          123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI----CRQE  196 (499)
Q Consensus       123 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~  196 (499)
                      ..+....++|+++++.+...++....+|+.--..+...|  +++++++.++.+.... +-+..+|+.--..+    ...+
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence            334455568888888888888888888888888888888  8888888888887653 33444555433333    2221


Q ss_pred             --CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---
Q 010830          197 --NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---  269 (499)
Q Consensus       197 --~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---  269 (499)
                        +++++++.+++++.+..+.+..+|+.-.-.+.+.|.++  ++++.++++.+.   .|.|...|+.....+.+.+.   
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence              57888888888887777788888888777777788877  888888888664   66677788877777777776   


Q ss_pred             ---HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH-hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHH
Q 010830          270 ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS-THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNV  345 (499)
Q Consensus       270 ---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  345 (499)
                         ++++++.++++.... +-|...|+-.-..+.+.|+. +.+..+..++.+.+..-+.+...+..+...|.+.|+.++|
T Consensus       199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence               888888888877765 34677777777777777764 3355566655543200145778888888888888888888


Q ss_pred             HHHHHHHHHC
Q 010830          346 FRFFDQMVFH  355 (499)
Q Consensus       346 ~~~~~~m~~~  355 (499)
                      .++++.+.+.
T Consensus       278 ~~~~~~l~~~  287 (306)
T 3dra_A          278 RTVYDLLKSK  287 (306)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            8888888763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.90  E-value=3.4e-08  Score=98.30  Aligned_cols=154  Identities=14%  Similarity=0.059  Sum_probs=120.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHH
Q 010830          126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF  205 (499)
Q Consensus       126 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~  205 (499)
                      .|++++|.+.|++..+..+.+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ-QRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence            4789999999999998888889999999999999999999999999998764 34577888888888888 999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC---CCHHHHHHHHHHHhh
Q 010830          206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALKFLRVMKG  282 (499)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~  282 (499)
                      +++..+..+.+...+..+...|.+.|++++|.+.|++..+.   .|++...+..+...+...   |+.++|.+.+++..+
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            99988766778899999999999999999999999999764   677888999999999999   999999999999877


Q ss_pred             CC
Q 010830          283 EN  284 (499)
Q Consensus       283 ~~  284 (499)
                      .+
T Consensus       157 ~~  158 (568)
T 2vsy_A          157 QG  158 (568)
T ss_dssp             HT
T ss_pred             cC
Confidence            54

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.90  E-value=1.5e-07  Score=81.35  Aligned_cols=58  Identities=12%  Similarity=0.018  Sum_probs=37.7

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhccCChhHHHHHHHHHHHC
Q 010830          366 MIFECLIKNKRVHEVEKFFHEMIKNEWQPT----PLNCATAITMLLDADEPEIAIEIWNYILEN  425 (499)
Q Consensus       366 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  425 (499)
                      .+...|.+.|++++|...|+.+++..  |+    ...+..+..++.+.|+.++|.+.++.+...
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            34456667777777777777776642  22    134666677777777777777777766654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.89  E-value=2e-08  Score=80.60  Aligned_cols=137  Identities=9%  Similarity=-0.017  Sum_probs=76.5

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |++++|+..++......+.+...+..+...|.+.|++++|.+.|++..+.   .|++..+|..+..+|.+.|++++|+..
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            55666666665554433334445555666666666666666666666443   565666666666666666666666666


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHH-HHHHHhcCCCCCCCHhHHHHHHHHHHcCC
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL-WDIMVGIGFNLMPNLIMYNAVIGLLCNND  340 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~  340 (499)
                      |++..+.. +-+...+..+...|.+.|+.++|.+. +++..+..   +-+..+|......+...|
T Consensus        88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence            66655543 12345555566666666665544433 35555532   234455555444444444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.87  E-value=3.4e-05  Score=74.64  Aligned_cols=345  Identities=8%  Similarity=-0.017  Sum_probs=213.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCC-cCHHHHHHHHHHHHc----cCCch
Q 010830          127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMH-GVE-QDVVAVNSLLSAICR----QENQT  199 (499)
Q Consensus       127 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~----~~~~~  199 (499)
                      |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+..+..    . ++.
T Consensus        28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~-~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ-TRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH-HHH
T ss_pred             CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh-HHH
Confidence            8899999999999985 5699999999998888773 46778888887654 543 366777777766542    3 678


Q ss_pred             HHHHHHHHHHhccCCCCH-HHHHHHHHHHH-------------hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830          200 SRALEFLNRVKKIVDPDG-DSFAILLEGWE-------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI  265 (499)
Q Consensus       200 ~~a~~~~~~~~~~~~~~~-~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~  265 (499)
                      +.+..+|++.......+. ..|......-.             ..+.+..|..+++.+....  ...+...|...+.--.
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~--~~~s~~~W~~y~~~E~  183 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI--RGWSVKNAARLIDLEM  183 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHh
Confidence            889999999876211111 12222111100             1122334444444443210  0012335655555443


Q ss_pred             cCC--C-----HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHc
Q 010830          266 RGK--Q-----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCN  338 (499)
Q Consensus       266 ~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~  338 (499)
                      ..+  -     .+.+..+|+++.... +.+...|...+..+...|+.+.|..++++....    +.+...|..    |..
T Consensus       184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~  254 (493)
T 2uy1_A          184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGL  254 (493)
T ss_dssp             TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHH
T ss_pred             cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHh
Confidence            321  1     355778888887743 445778888888888999999999999999874    122223322    222


Q ss_pred             CCChHHHHHHHHHHHHCC---------CCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010830          339 NDDVDNVFRFFDQMVFHG---------AFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML  406 (499)
Q Consensus       339 ~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  406 (499)
                      ..+.++.   ++.+.+.-         ..+   ....|...+....+.++.+.|..+|+.+ +.. ..+...|......-
T Consensus       255 ~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE  329 (493)
T 2uy1_A          255 VMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIE  329 (493)
T ss_dssp             HTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHH
T ss_pred             hcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHH
Confidence            2122222   22222210         001   1245666666677788899999999999 321 22334443322222


Q ss_pred             hcc-CChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--h
Q 010830          407 LDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--M  483 (499)
Q Consensus       407 ~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a  483 (499)
                      ... ++.+.|..+|+...+.. .-+...+...++...+.|+.+.|..+|+.+.     -....|...++-=...|+.  +
T Consensus       330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~  403 (493)
T 2uy1_A          330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF  403 (493)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence            222 36999999999988743 2234556667787888999999999999873     2467777777766777877  7


Q ss_pred             HHHHHHHHHHHh
Q 010830          484 RDIFDSLERRCK  495 (499)
Q Consensus       484 ~~~~~~~~~~~~  495 (499)
                      .+++++..+..+
T Consensus       404 r~v~~~~~~~~~  415 (493)
T 2uy1_A          404 RELVDQKMDAIK  415 (493)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            777888877665

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.86  E-value=1e-06  Score=79.45  Aligned_cols=215  Identities=10%  Similarity=0.026  Sum_probs=125.2

Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccC
Q 010830          169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE  248 (499)
Q Consensus       169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  248 (499)
                      .+..+......|+..+...+...+.-.   .+   .++..-..........+...+..+...|++++|.+++++..+...
T Consensus        33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~  106 (293)
T 3u3w_A           33 EVSRIESGAVYPSMDILQGIAAKLQIP---II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE  106 (293)
T ss_dssp             HHHHHHTTSCCCCHHHHHHHHHHHTCC---TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhCcC---HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence            344444444467766666666655432   11   111111100001122233346677888889999888888866422


Q ss_pred             CCCch---HHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC-
Q 010830          249 WNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNALDILVKLNDSTHAVQLWDIMVGIG-  319 (499)
Q Consensus       249 ~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-  319 (499)
                      ..|+.   ...+..+...+...+++++|+..|++..+.... .+    ..+++.+..+|...|++++|...++++.+.- 
T Consensus       107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  186 (293)
T 3u3w_A          107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            23311   113334666777778888888888887763222 22    2357777788888888888888888777310 


Q ss_pred             ---CCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010830          320 ---FNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFPD-SLTYNMIFECLIKNK-RVHEVEKFFHEMIK  389 (499)
Q Consensus       320 ---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~  389 (499)
                         ........+|..+...|.+.|++++|...+++..+.    +..+. ...|..+..+|.+.| .+++|.+.+++...
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence               001112346777777788888888888777766541    22222 456666777777777 35777777766654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=3.4e-07  Score=78.14  Aligned_cols=163  Identities=13%  Similarity=0.034  Sum_probs=87.6

Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC----CHhHHHHHHHHHHhcCCCCCCCHhH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN----DSTHAVQLWDIMVGIGFNLMPNLIM  328 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  328 (499)
                      ++..+..+...|...+++++|+++|++..+.|   +...+..+-..|.. +    +.++|.++|++..+.|     +...
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a   87 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSG   87 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHH
Confidence            33445555555555555555555555555443   33344444444444 3    5556666666555544     4555


Q ss_pred             HHHHHHHHHc----CCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhH
Q 010830          329 YNAVIGLLCN----NDDVDNVFRFFDQMVFHGAF-PDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNC  399 (499)
Q Consensus       329 ~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~  399 (499)
                      +..|...|..    .+++++|++.|++..+.|.. -+...+..|...|..    .++.++|...|++..+.+  .+...+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~  165 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE  165 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence            5555555554    55666666666666554321 014455555555655    556666777776666641  233344


Q ss_pred             HHHHHHHhcc-C-----ChhHHHHHHHHHHHCC
Q 010830          400 ATAITMLLDA-D-----EPEIAIEIWNYILENG  426 (499)
Q Consensus       400 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~~  426 (499)
                      ..|...|... |     ++++|..+|+...+.|
T Consensus       166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5555555432 2     6677777777666655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.84  E-value=9e-08  Score=87.06  Aligned_cols=167  Identities=14%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010830          160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT  239 (499)
Q Consensus       160 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  239 (499)
                      .|++++|.+++++..+..  +.         .+....++++.|...|++.              ...|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            456666666666654321  10         0222125666666665543              3456667777777777


Q ss_pred             HHHHhHcc---CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHHcCCHhHHHH
Q 010830          240 FGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT--LKFFSNALDILVKLNDSTHAVQ  310 (499)
Q Consensus       240 ~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~  310 (499)
                      |.+..+-.   +-...-..+|+.+...|.+.|++++|+..|++..+.    | .+.  ..++..+...|.. |++++|+.
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            76654420   100111335555666666666666666666554321    1 111  2234444444444 55555555


Q ss_pred             HHHHHHhcCCCCC-C--CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          311 LWDIMVGIGFNLM-P--NLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       311 ~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      .|++..+...... +  ...+++.+...|.+.|++++|+..|++..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555444210000 0  02344444455555555555555555444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.82  E-value=1.8e-07  Score=85.12  Aligned_cols=161  Identities=14%  Similarity=0.104  Sum_probs=72.2

Q ss_pred             HHHhcCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CC--CHhHHHHHH
Q 010830          262 ITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MP--NLIMYNAVI  333 (499)
Q Consensus       262 ~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li  333 (499)
                      ..|...|++++|...|.+..+.    +-.. -..+|+.+..+|.+.|++++|...+++..+..... .+  -..+++.+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444556666666655554331    1000 02344555555555566666666655554431000 01  123444555


Q ss_pred             HHHHcCCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-hhhHHHHH
Q 010830          334 GLLCNNDDVDNVFRFFDQMVFH----GAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT-PLNCATAI  403 (499)
Q Consensus       334 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li  403 (499)
                      ..|.. |++++|+..|++..+.    |... ...++..+...|.+.|++++|+..|++.++.    +..+. ...+..+.
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            55555 5555555555554431    0000 0234444555555555555555555555442    11000 11333334


Q ss_pred             HHHhccCChhHHHHHHHHHH
Q 010830          404 TMLLDADEPEIAIEIWNYIL  423 (499)
Q Consensus       404 ~~~~~~g~~~~a~~~~~~m~  423 (499)
                      .++...|++++|...|++..
T Consensus       203 ~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHh
Confidence            44444455555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.75  E-value=8.3e-06  Score=73.94  Aligned_cols=174  Identities=7%  Similarity=-0.013  Sum_probs=137.3

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-ChhHHHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA-G-KYDEAVM  168 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~  168 (499)
                      ....++|+++++.+....+-+..+|+.--.++...| .++++++.++.+...++.+..+|+.-...+.+. + +++++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            445678999999888878888899999988888888 599999999999999999999999988888877 7 8999999


Q ss_pred             HHHHHHhCCCCcCHHHHHHHHHHHHccCCchH--------HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-------H
Q 010830          169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--------RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN-------V  233 (499)
Q Consensus       169 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~  233 (499)
                      +++.+.+.. .-|-.+|+.-.-.+.+. +.++        ++++.++++.+..+.|...|+.....+.+.+.       +
T Consensus       147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~  224 (349)
T 3q7a_A          147 YIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL  224 (349)
T ss_dssp             HHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence            999998764 45667777655555444 4454        78888888877677788888888888877776       6


Q ss_pred             HHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      +++++.+++....   .|.|...|+.+-..+.+.|+.
T Consensus       225 ~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          225 QDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCC
Confidence            7788888777554   777888888777776666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.73  E-value=3.2e-06  Score=76.14  Aligned_cols=89  Identities=10%  Similarity=0.157  Sum_probs=43.6

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cC----HHHHHHH
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE-QD----VVAVNSL  188 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l  188 (499)
                      +..+...|++++|.++++...+....+..      .+..+...+...|++++|++.|+...+.... .+    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45556666666666666666554321111      2223444455555666666666655542111 11    1234444


Q ss_pred             HHHHHccCCchHHHHHHHHHH
Q 010830          189 LSAICRQENQTSRALEFLNRV  209 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~  209 (499)
                      ...|... |++++|..+|++.
T Consensus       162 g~~y~~~-g~~~~A~~~~~~a  181 (293)
T 3u3w_A          162 ANIYAEN-GYLKKGIDLFEQI  181 (293)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHH
Confidence            4445444 5555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.70  E-value=2.2e-05  Score=71.14  Aligned_cols=184  Identities=7%  Similarity=0.031  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      ++.+-....+.+..++|+++++.+...++.+..+|+.--..+...| .++++++.++.+.... +-+..+|+.--..+..
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            3344445556667789999999999999999999999888888888 5999999999998764 4456667766555544


Q ss_pred             cCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhHccCCCCchHHhHHHHHHHHh
Q 010830          195 QEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--------EANKTFGEMVERFEWNPEHVLAYETFLITLI  265 (499)
Q Consensus       195 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~  265 (499)
                      ..+ +.++++.+++++.+..+.|..+|+.-.-.+.+.|.++        ++++.++++.+.   .|.|..+|+.....+.
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHT
T ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence            324 7889999999998877888888887666666666665        888888888665   6778888888888887


Q ss_pred             cCCC-------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCC
Q 010830          266 RGKQ-------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLND  304 (499)
Q Consensus       266 ~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  304 (499)
                      +.++       ++++++.++++.... +-|...|+-+-..+.+.|.
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            7775       567777777666543 2345555554444444443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.70  E-value=6.3e-06  Score=74.19  Aligned_cols=128  Identities=9%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CcC--HH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGV---EQD--VV  183 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~  183 (499)
                      .+...+..+...|++++|.+.++...+......      ..+..+...+...|++++|++.+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344455556666666666666665555432221      1222334444555555555555555543211   111  22


Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhc---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          184 AVNSLLSAICRQENQTSRALEFLNRVKK---IVDPD----GDSFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      +++.+-..|... |++++|...|++..+   ..+.+    ..++..+...|.+.|++++|.+.+++.
T Consensus       157 ~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          157 IENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            444444444444 555555555544331   11111    134444444444444444444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.69  E-value=1.2e-06  Score=74.69  Aligned_cols=130  Identities=7%  Similarity=-0.048  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      +..+...+...|++++|.+.|++..    .|+...+..+...+... |++++|...|++.....+.+...+..+...|.+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            3445555666667777776666553    45566666666666666 677777777766655445566667777777777


Q ss_pred             cCCHHHHHHHHHHHhHccC-------------CCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          230 EGNVEEANKTFGEMVERFE-------------WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~-------------~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .|++++|.+.|++..+...             ..|.....+..+..++.+.|++++|.+.|++..+..
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            7777777777777655311             223334667777777777777777777777776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.67  E-value=9e-07  Score=71.89  Aligned_cols=95  Identities=11%  Similarity=-0.068  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      .|..+...+...|++++|...|+...+..+.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            445555556666666666666666665555555556666666666666666666665554432 2233344444444444


Q ss_pred             cCCchHHHHHHHHHHhc
Q 010830          195 QENQTSRALEFLNRVKK  211 (499)
Q Consensus       195 ~~~~~~~a~~~~~~~~~  211 (499)
                      . |++++|...+++...
T Consensus        94 ~-~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           94 L-GKFRAALRDYETVVK  109 (166)
T ss_dssp             T-TCHHHHHHHHHHHHH
T ss_pred             h-ccHHHHHHHHHHHHH
Confidence            4 444445444444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.67  E-value=2.8e-06  Score=72.31  Aligned_cols=129  Identities=11%  Similarity=-0.021  Sum_probs=88.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHH
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGL  335 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~  335 (499)
                      .+..+...+...|++++|++.|++..    .|+...+..+..++...|++++|...+++..+..   +.+...|..+...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~   80 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence            44556666677777777777776553    4466677777777777777777777777777653   4456677777777


Q ss_pred             HHcCCChHHHHHHHHHHHHCCCC--------------C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          336 LCNNDDVDNVFRFFDQMVFHGAF--------------P-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       336 ~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      |...|++++|...|++..+....              | ....+..+..+|...|++++|...|+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            77777777777777777763211              1 12556667777777788888888887777653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.67  E-value=2.3e-06  Score=74.99  Aligned_cols=188  Identities=6%  Similarity=-0.134  Sum_probs=106.2

Q ss_pred             hCCChHHHHHHHHHHHhCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCcCH---------------
Q 010830          125 KNGRFEQMWNAVRVMKEDGVLSLPTFASI-------FDSYCGAGKYDEAVMSFDVMSMHGVEQDV---------------  182 (499)
Q Consensus       125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------  182 (499)
                      +.++...|.+.|.+..+.++-....|..+       ...+.+.++..+++..+..-..  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            57888999999999988888888888888       4666666666666665555443  22211               


Q ss_pred             -------HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hH
Q 010830          183 -------VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HV  254 (499)
Q Consensus       183 -------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~  254 (499)
                             ...-.+...+... |++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+..... . .|. ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~-g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQ-GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHH-TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHH
Confidence                   1122233444445 666666666666554332222 4444555666666666666666544221 0 110 01


Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            2455556666666666666666666553332132  223344445555666666666666666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.67  E-value=3.2e-06  Score=76.12  Aligned_cols=135  Identities=9%  Similarity=0.039  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc---hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC---CC--Hh
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PT--LK  290 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~  290 (499)
                      .+...+..+...|++++|.+.+.+..+.....+.   ....+..+...+...|++++|+..+++..+....   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3344555566666666666666655443111110   0112233444455555666666666555432111   11  22


Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC----CHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP----NLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      +++.+...|...|++++|...+++..+.....+.    ...+++.+...|.+.|++++|+..+++..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4444555555555555555555554411000000    11344444455555555555555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.66  E-value=1e-06  Score=67.40  Aligned_cols=95  Identities=18%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|..+|+++.+.. +.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            34555555566666666666666666655554455555555555555555555555555554432 22333333344444


Q ss_pred             HccCCchHHHHHHHHHH
Q 010830          193 CRQENQTSRALEFLNRV  209 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~  209 (499)
                      ... |++++|...++++
T Consensus        88 ~~~-~~~~~A~~~~~~~  103 (125)
T 1na0_A           88 YKQ-GDYDEAIEYYQKA  103 (125)
T ss_dssp             HHT-TCHHHHHHHHHHH
T ss_pred             HHh-cCHHHHHHHHHHH
Confidence            443 4444444444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.65  E-value=1e-06  Score=71.57  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..+..+...+...|++++|...|+...+.. +.+..++..+...+... |++++|...+++..+..+.+...+..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            346666666777777777777777765542 23455555555566665 6666666666666554455566666666666


Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHH--HHHHhcCCCHHHHHHHHHHH
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETF--LITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m  280 (499)
                      ...|++++|.+.|++..+.   .|.+...+..+  +..+.+.|++++|++.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            6666666666666666443   34344344222  22245556666666555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.63  E-value=9.1e-07  Score=68.75  Aligned_cols=97  Identities=6%  Similarity=-0.016  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      .+...|..+...+.+.|++++|.+.|++..+..+.+..++..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            3445556666666666666666666666665555555556666666666666666666655554432 122333333333


Q ss_pred             HHHccCCchHHHHHHHHHH
Q 010830          191 AICRQENQTSRALEFLNRV  209 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~  209 (499)
                      .+... |++++|...|++.
T Consensus        93 ~~~~~-~~~~~A~~~~~~~  110 (133)
T 2lni_A           93 ALEAM-KDYTKAMDVYQKA  110 (133)
T ss_dssp             HHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHH-hhHHHHHHHHHHH
Confidence            33333 4444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=7.8e-07  Score=70.93  Aligned_cols=103  Identities=10%  Similarity=0.085  Sum_probs=52.2

Q ss_pred             CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHh
Q 010830          248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLI  327 (499)
Q Consensus       248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  327 (499)
                      .+.|++...+..+...+.+.|++++|+..|++..... +-+...|..+..+|...|++++|...|++..+..   +.+..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~  105 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYT  105 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcH
Confidence            4445455555555555555555555555555554432 1234444445555555555555555555555432   22344


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          328 MYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       328 ~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      .|..+..+|.+.|++++|...|++..+
T Consensus       106 ~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          106 PVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455555555555555555555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.61  E-value=1.3e-06  Score=67.31  Aligned_cols=106  Identities=10%  Similarity=0.121  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      +......|.+.|++++|++.|++..+.. +.+...|..+-.++.+. |++++|+..|++..+..+.+...|..+..+|..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            3333444444444444444444443321 22333333333344444 444444444444433333445555555555556


Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETF  260 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l  260 (499)
                      .|++++|.+.|++..+.   .|++...+..+
T Consensus        94 ~~~~~~A~~~~~~al~l---~P~~~~a~~~l  121 (126)
T 4gco_A           94 MREWSKAQRAYEDALQV---DPSNEEAREGV  121 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH---CcCCHHHHHHH
Confidence            66666666666655432   45444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.60  E-value=1.6e-06  Score=66.26  Aligned_cols=112  Identities=18%  Similarity=0.278  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ...|..+...+...|++++|.++|+++.+.. +.+..++..+...+... |++++|..+++++.+..+.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            3456666666777777777777777665542 23445555555556655 666666666666555444455566666666


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT  263 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~  263 (499)
                      |.+.|++++|.+.|+++.+.   .|++...+..+...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~  120 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNA  120 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence            66666666666666666443   34344444444333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.58  E-value=1.7e-06  Score=66.78  Aligned_cols=110  Identities=5%  Similarity=-0.061  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|......|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+-.++
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            35666777888888999999999988888888888888888888889999999999888887653 44567777888888


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      ... |++++|...|++..+..+.+...+..+.
T Consensus        92 ~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           92 VAM-REWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            888 8899999888887765555655555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.58  E-value=1.5e-06  Score=67.17  Aligned_cols=62  Identities=16%  Similarity=0.026  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      ..|..+...+...|++++|.+.|++.....+.+...+..+...+...|++++|.+.++...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   74 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC   74 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence            34445555555555555555555555555444455555555555555555555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.58  E-value=6.2e-07  Score=80.26  Aligned_cols=92  Identities=13%  Similarity=0.023  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      +..+...+.+.|++++|...|+...+.. +.+...|..+...+... |++++|...+++..+..+.+...+..+..+|..
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3334444444444444444444443321 11233333333333333 444444444444333333334444444444444


Q ss_pred             cCCHHHHHHHHHHH
Q 010830          230 EGNVEEANKTFGEM  243 (499)
Q Consensus       230 ~g~~~~a~~~~~~~  243 (499)
                      .|++++|.+.|++.
T Consensus        85 ~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           85 MESYDEAIANLQRA   98 (281)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            44555554444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.56  E-value=2.2e-06  Score=66.51  Aligned_cols=117  Identities=8%  Similarity=0.028  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      +...|..+...+...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+..+.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            45567777777777777777777777776542 23455666666666666 77777777777766554556666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG  267 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~  267 (499)
                      .+.+.|++++|.+.|++..+.   .|.+...+..+...+.+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHh
Confidence            777777777777777776543   444444555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.54  E-value=6.7e-07  Score=73.77  Aligned_cols=95  Identities=9%  Similarity=0.079  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHhHccCCCCchHHhHHHH
Q 010830          184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG-WEKEGNV--EEANKTFGEMVERFEWNPEHVLAYETF  260 (499)
Q Consensus       184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~~~~~l  260 (499)
                      .+..+...+... |++++|...|++..+..+.+...+..+... |...|++  ++|...|++..+.   .|++...+..+
T Consensus        46 ~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l  121 (177)
T 2e2e_A           46 QWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALMLL  121 (177)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence            333333333333 444444444444333223334444444444 4445554  5555555555432   34444455555


Q ss_pred             HHHHhcCCCHHHHHHHHHHHhh
Q 010830          261 LITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       261 i~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      ...+...|++++|...|++..+
T Consensus       122 a~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          122 ASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHh
Confidence            5555555555555555555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.54  E-value=1.2e-06  Score=73.86  Aligned_cols=157  Identities=8%  Similarity=-0.047  Sum_probs=75.5

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                      |++++|.++++.+.........++..+...|...|++++|...+++..+.   .+..+....++..+...+...|++++|
T Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   85 (203)
T 3gw4_A            6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA   85 (203)
T ss_dssp             -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            55555555433333322233455555666666666666666666555431   112222344555666666666666666


Q ss_pred             HHHHHHHhhC----CCCC--CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CC--CHhHHHHHHHHHHcCCChHH
Q 010830          274 LKFLRVMKGE----NCFP--TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL-MP--NLIMYNAVIGLLCNNDDVDN  344 (499)
Q Consensus       274 ~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~  344 (499)
                      .+.+++..+.    +-.+  ....+..+...+...|++++|...+++..+..... .+  -..++..+...+...|++++
T Consensus        86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  165 (203)
T 3gw4_A           86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE  165 (203)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence            6666554431    1011  12234445555555666666666655544211000 00  12233445555555555555


Q ss_pred             HHHHHHHHH
Q 010830          345 VFRFFDQMV  353 (499)
Q Consensus       345 a~~~~~~m~  353 (499)
                      |.+.+++..
T Consensus       166 A~~~~~~al  174 (203)
T 3gw4_A          166 AQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.54  E-value=5.2e-07  Score=79.00  Aligned_cols=190  Identities=9%  Similarity=0.003  Sum_probs=143.2

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhCCChHHHHHHHHHHHhCCC------CC-----------
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLM-------VDVLGKNGRFEQMWNAVRVMKEDGV------LS-----------  146 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~------~~-----------  146 (499)
                      ..+++..|.+.|..+.+..+-....|+.+       ...+.+.++..+++..+..-.+..+      .+           
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            46889999999999988888889999988       5666666666666666665555211      01           


Q ss_pred             ----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCC--HHHH
Q 010830          147 ----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD--GDSF  220 (499)
Q Consensus       147 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~  220 (499)
                          ...+-.+...+...|++++|.++|+.+...  .|+....-.+-..+.+. +++++|+..|+.......|.  ...+
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~d~~~~~~a~  174 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWPDKFLAGAAG  174 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccCCcccHHHHH
Confidence                234566778899999999999999998765  35443444444566677 99999999998654422221  3467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc-hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      ..+..++...|++++|++.|++.... ...|. ..........++.+.|+.++|...|+++....
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            88899999999999999999999752 33254 44567788899999999999999999998865

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.53  E-value=7.8e-07  Score=75.08  Aligned_cols=63  Identities=10%  Similarity=-0.054  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      .+..+...+...|++++|.+.+++..+.   .+.......++..+...+...|++++|.+.+++..
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3444555555555555555555554321   11111123345555666666666666666665544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.53  E-value=1.1e-07  Score=87.56  Aligned_cols=122  Identities=14%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSAICRQENQTSRALEFLNRV  209 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~  209 (499)
                      +...|..+...|.+.|++++|...|++..+..  |+                ...|..+-.++.+. |++++|+..+++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a  222 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            34566666777777777777777777665542  22                23444444444444 5555555555554


Q ss_pred             hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       210 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                      .+..+.+...|..+..+|...|++++|...|++..+.   .|++...+..+..++.+.|+.++|
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4433444455555555555555555555555555332   444444555555555555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.53  E-value=7.5e-07  Score=71.05  Aligned_cols=95  Identities=12%  Similarity=0.046  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI  298 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  298 (499)
                      .+..+...+.+.|++++|.+.|++..+.   .|.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..+
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            3344444444444444444444444322   34444444444444444444444444444444322 1123334444444


Q ss_pred             HHHcCCHhHHHHHHHHHHh
Q 010830          299 LVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       299 ~~~~~~~~~a~~~~~~~~~  317 (499)
                      |.+.|++++|...|+..++
T Consensus       114 ~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            4444444444444444444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=4.8e-07  Score=80.97  Aligned_cols=99  Identities=12%  Similarity=-0.045  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      .+...+..+...+.+.|++++|+..|+...+..+.+...|..+...|.+.|++++|.+.++...+.. +.+...+..+..
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3566777888888899999999999998888887788888899999999999999999998887663 345667777777


Q ss_pred             HHHccCCchHHHHHHHHHHhc
Q 010830          191 AICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ++... |++++|...|++..+
T Consensus        81 ~~~~~-g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEM-ESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHH
Confidence            88888 899999998887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.51  E-value=2.9e-06  Score=65.50  Aligned_cols=116  Identities=10%  Similarity=0.054  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..+..+...+...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++.....+.+...+..+...|
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            445555666666666666666666655432 22344455555555555 5555555555555443344455555555555


Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK  268 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~  268 (499)
                      .+.|++++|.+.|++..+.   .|++...+..+..++.+.|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHh
Confidence            5555555555555555432   3434444444444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.50  E-value=7.3e-07  Score=73.57  Aligned_cols=121  Identities=8%  Similarity=0.107  Sum_probs=75.7

Q ss_pred             HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCch--H
Q 010830          124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQT--S  200 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~--~  200 (499)
                      ...|++++|...|+...+..+.+...|..+...|...|++++|...|++..+.. +.+...+..+... +... |++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~-~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA-SQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT-TTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-CCcchH
Confidence            345666666666666666666666667777777777777777777777665542 2244455555555 4455 666  7


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830          201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       201 ~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  246 (499)
                      +|...+++.....+.+...+..+...|...|++++|...|++..+.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            7777777766555556667777777777777777777777777553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.50  E-value=7.8e-05  Score=67.24  Aligned_cols=183  Identities=9%  Similarity=-0.039  Sum_probs=142.3

Q ss_pred             chhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--C
Q 010830           95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--K  162 (499)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~  162 (499)
                      .++|+++++.+....+-+..+|+.--..+...+.          +++++..++.+...++.+..+|+.-...+.+.|  .
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence            4579999999988888888889887666655544          688999999999999999999999888888888  4


Q ss_pred             hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc-hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-----------
Q 010830          163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ-TSRALEFLNRVKKIVDPDGDSFAILLEGWEKE-----------  230 (499)
Q Consensus       163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  230 (499)
                      +++++++++.+.+.. +-|-.+|+.-.-.+... |. ++++++.++.+.+..+.|...|+.....+.+.           
T Consensus       126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence            899999999998764 55777887777776776 66 58999999998877778888888877666655           


Q ss_pred             ---CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcC-----------CCHHHHHHHHHHHhh
Q 010830          231 ---GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-----------KQVDEALKFLRVMKG  282 (499)
Q Consensus       231 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~  282 (499)
                         +.++++++.+......   .|+|...|+.+-..+.+.           +.++++++.++++.+
T Consensus       204 ~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle  266 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE  266 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence               4577888888888654   888888888776666655           235555555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.50  E-value=1e-06  Score=70.24  Aligned_cols=108  Identities=9%  Similarity=-0.018  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 010830          102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD  181 (499)
Q Consensus       102 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  181 (499)
                      |+.+....+.+...+..+...+.+.|++++|+..|+.....++.+...|..+..+|...|++++|++.|++..+.. +.+
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~   88 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE   88 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence            3333333344455666666677777777777777777777666666777777777777777777777777665542 223


Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          182 VVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ...+..+-.++... |++++|...|++..+
T Consensus        89 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           89 PRFPFHAAECLLQX-GELAEAESGLFLAQE  117 (148)
T ss_dssp             THHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            44555555555555 666666666665543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.48  E-value=1.2e-06  Score=69.78  Aligned_cols=108  Identities=15%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCC
Q 010830          136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP  215 (499)
Q Consensus       136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~  215 (499)
                      |+.+.+..+.+...+..+...+...|++++|...|+...... +.+...|..+-.++... |++++|...|++.....+.
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCC
Confidence            333333333344455556666666666666666666655442 23444455555555555 6666666666555544444


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      +...+..+..+|...|++++|.+.|++..+
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555556666666666666555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.45  E-value=2.3e-07  Score=78.31  Aligned_cols=122  Identities=12%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcC--------------HHHHHHHHHHHHccCCchHHHHHHHHHHhccC
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD--------------VVAVNSLLSAICRQENQTSRALEFLNRVKKIV  213 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~  213 (499)
                      .+..+...+...|++++|.+.|++..+..- .++              ...+..+..++... |++++|+..+++.....
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC
Confidence            444455555555555555555555544310 000              13344444444444 55555555555544433


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHH
Q 010830          214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL  274 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~  274 (499)
                      +.+...+..+..+|...|++++|.+.|++..+.   .|++...+..+..++...++.+++.
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555332   4444444555544444444444333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.43  E-value=3.8e-06  Score=77.19  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=115.4

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---------------LPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      +...|..+...+.+.|++++|+..|++..+..+.+               ..+|..+..+|.+.|++++|+..|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46788899999999999999999999999887655               589999999999999999999999999876


Q ss_pred             CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhH
Q 010830          177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA-NKTFGEMVE  245 (499)
Q Consensus       177 g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~  245 (499)
                      . +.+...|..+-.++... |++++|...|++..+..+.+...+..+...+.+.|+.++| .+.|..|..
T Consensus       226 ~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 44678888888899998 9999999999999887777888999999999999999988 456666644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.41  E-value=1.2e-05  Score=60.63  Aligned_cols=61  Identities=8%  Similarity=-0.042  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      .|..+...+...|++++|.+.|+......+.+...+..+...+...|++++|...+++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   66 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   66 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4444455555555555555555555554444444555555555555555555555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=1.9e-06  Score=68.17  Aligned_cols=98  Identities=7%  Similarity=-0.031  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      +...+..+...+.+.|++++|...|+.....++.+...|..+..+|.+.|++++|...|+...+.. +.+...+..+-.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            445555666677777777777777777777776677777777777777777777777777776553 2344455555555


Q ss_pred             HHccCCchHHHHHHHHHHhc
Q 010830          192 ICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~  211 (499)
                      +... |++++|...|++..+
T Consensus        96 ~~~~-g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           96 HLQL-GDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHH
Confidence            6666 666666666666544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=7.4e-06  Score=63.02  Aligned_cols=92  Identities=13%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      .|..+...+.+.|++++|+..|++..+..+.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+-.++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555555555555554432 1223333333333333


Q ss_pred             cCCchHHHHHHHHH
Q 010830          195 QENQTSRALEFLNR  208 (499)
Q Consensus       195 ~~~~~~~a~~~~~~  208 (499)
                      . |++++|...|++
T Consensus        85 ~-~~~~~A~~~~~~   97 (126)
T 3upv_A           85 V-KEYASALETLDA   97 (126)
T ss_dssp             T-TCHHHHHHHHHH
T ss_pred             H-hCHHHHHHHHHH
Confidence            3 444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.37  E-value=1.6e-05  Score=59.82  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..+..+...+...|++++|.+.|+...... +.+...+..+...+... |++++|...+++..+..+.+...+..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            445556666666666666666666665442 22444555555555555 6666666666555444444455555555555


Q ss_pred             HhcCCHHHHHHHHHHHh
Q 010830          228 EKEGNVEEANKTFGEMV  244 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~  244 (499)
                      ...|++++|.+.+++..
T Consensus        83 ~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            56666666666555553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.36  E-value=1.8e-06  Score=68.23  Aligned_cols=97  Identities=16%  Similarity=0.046  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ...+..+...+.+.|++++|.+.|+...... +.+...|..+-.++... |++++|...|++.....+.+...+..+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            3344455555666666666666666655442 22344444444455555 556666655555554444455555555555


Q ss_pred             HHhcCCHHHHHHHHHHHhH
Q 010830          227 WEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~  245 (499)
                      |...|++++|.+.|+...+
T Consensus        96 ~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.6e-05  Score=61.08  Aligned_cols=96  Identities=10%  Similarity=-0.001  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++... |++++|+..+++..+..+.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            345566666677777777777777665542 33455555666666666 6666666666666554455566666666666


Q ss_pred             HhcCCHHHHHHHHHHHhH
Q 010830          228 EKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~  245 (499)
                      ...|++++|.+.|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666666666666666644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.34  E-value=3e-05  Score=73.96  Aligned_cols=198  Identities=7%  Similarity=-0.036  Sum_probs=135.8

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCcC
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGVLS-----------------LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQD  181 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~~~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~  181 (499)
                      .+.+.+.|++++|++.|..+.+.....                 ..++..+...|...|++++|.+.+..+... +..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            355677889999999998887765311                 124778889999999999999999877542 11122


Q ss_pred             ---HHHHHHHHHHHHccCCchHHHHHHHHHHhc-----cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHcc---CC
Q 010830          182 ---VVAVNSLLSAICRQENQTSRALEFLNRVKK-----IVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EW  249 (499)
Q Consensus       182 ---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~  249 (499)
                         .......+..+....|+.+.|..+++....     +..+ -..++..+...|...|++++|..+++++....   +-
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence               223344455555555889999998887633     2222 25577888999999999999999988875531   22


Q ss_pred             CCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .+.....+..++..|...|++++|..++++....    +..+.  ...+..+...+...|+++.|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3334567888889999999999999998876531    21111  23455556666777888888887776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.31  E-value=9.1e-06  Score=60.64  Aligned_cols=98  Identities=10%  Similarity=-0.011  Sum_probs=46.4

Q ss_pred             hHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC--CHhHHH
Q 010830          253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP--NLIMYN  330 (499)
Q Consensus       253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~  330 (499)
                      +...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+..   +.  +...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~   80 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWA   80 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHH
Confidence            33344444555555555555555555444322 1123344444444455555555555555544432   22  344455


Q ss_pred             HHHHHHHcC-CChHHHHHHHHHHHH
Q 010830          331 AVIGLLCNN-DDVDNVFRFFDQMVF  354 (499)
Q Consensus       331 ~li~~~~~~-~~~~~a~~~~~~m~~  354 (499)
                      .+...+.+. |++++|.+.+++...
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            555555555 555555555555444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.31  E-value=0.0004  Score=62.63  Aligned_cols=234  Identities=8%  Similarity=-0.050  Sum_probs=114.2

Q ss_pred             hCCCh-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830          125 KNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC  193 (499)
Q Consensus       125 ~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  193 (499)
                      +.|.+ ++|+++++.+...++.+..+|+.--..+...++          +++++.+++.+.... +-+..+|+.---.+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~  119 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence            44444 477888888888877777777755444443332          344555555544332 223344444333333


Q ss_pred             ccCC--chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCH
Q 010830          194 RQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN-VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV  270 (499)
Q Consensus       194 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~  270 (499)
                      .. +  .+++++.+++.+.+..+.|..+|+.-.-.....|. ++++++.++++.+.   .|.|..+|+.....+.+.+..
T Consensus       120 ~l-~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          120 RL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCC
T ss_pred             cc-CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhc
Confidence            33 3  24445555544444444444444444444444444 34444444444332   333444444433333222100


Q ss_pred             HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC-----------
Q 010830          271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN-----------  339 (499)
Q Consensus       271 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------  339 (499)
                      ..+-       ..+ .             ...+.++++.+.++..+...   +-|...|+-+-..+.+.           
T Consensus       196 ~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~---P~d~SaW~Y~r~ll~~~~~~~~~~~~~~  251 (331)
T 3dss_A          196 PDSG-------PQG-R-------------LPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGAGSGRCELSVEKS  251 (331)
T ss_dssp             C--------------C-------------CCHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHSSSCGGGCCHHHH
T ss_pred             cccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccCccccchHHH
Confidence            0000       000 0             00033566666666666653   44666666544444444           


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHhHHHHHHH-----HHhcCCHhHHHHHHHHHHHC
Q 010830          340 DDVDNVFRFFDQMVFHGAFPDSLTYNMIFEC-----LIKNKRVHEVEKFFHEMIKN  390 (499)
Q Consensus       340 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~  390 (499)
                      +.++++++.++++.+.  .||. .|+.+-.+     ....|..+++...+.++++.
T Consensus       252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            3467778888777763  3443 23332222     22356677778888888763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.30  E-value=1.2e-05  Score=61.94  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC--CCCC----Hhh
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPT----LKF  291 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~~  291 (499)
                      ..+..+...+.+.|++++|++.|++..+.   .|++...|+.+..+|.+.|++++|++.+++..+..  ...+    ..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            34556677777777777777777777543   66677777777777777777777777777665421  1111    124


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          292 FSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       292 ~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      |..+..++...|++++|++.|++.++
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44555556666666666666666555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=3.3e-05  Score=61.00  Aligned_cols=94  Identities=12%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      .+..+...+...|++++|.+.|++..+.  .|+    ...+..+...+... |++++|...+++..+..+.+...+..+.
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            3444444444444444444444444332  222    23333333344444 4444444444444333333445555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHhH
Q 010830          225 EGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       225 ~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      ..|...|++++|.+.|++..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            556666666666666666544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.28  E-value=1.4e-05  Score=62.34  Aligned_cols=99  Identities=12%  Similarity=-0.046  Sum_probs=67.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL  189 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  189 (499)
                      +.+...|..+...+...|++++|...|+...+..+.+...|..+...+...|++++|...++...+.. +.+...+..+.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            44566777777777777777777777777777766667777777777777777777777777766543 23455555566


Q ss_pred             HHHHccCCchHHHHHHHHHHh
Q 010830          190 SAICRQENQTSRALEFLNRVK  210 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~  210 (499)
                      .++... |++++|...|++..
T Consensus        85 ~~~~~~-~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEM-ESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHH-hhHHHHHHHHHHHH
Confidence            666666 66666666666653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=3.4e-05  Score=60.93  Aligned_cols=109  Identities=14%  Similarity=-0.044  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS  187 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  187 (499)
                      .+...+..+...+...|++++|.+.|++..+..+.+   ...|..+...|...|++++|.+.++...+.. +.+...+..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            345555556666666666666666666666554433   4556666666666666666666666655442 223445555


Q ss_pred             HHHHHHccCCchHHHHHHHHHHhccCCCCHHHHH
Q 010830          188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA  221 (499)
Q Consensus       188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  221 (499)
                      +..++... |++++|...|++.....+.+...+.
T Consensus       105 ~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~  137 (148)
T 2dba_A          105 RSQALEKL-GRLDQAVLDLQRCVSLEPKNKVFQE  137 (148)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHH
Confidence            55555555 6666666666665443333333333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.24  E-value=1.9e-05  Score=63.99  Aligned_cols=98  Identities=8%  Similarity=-0.038  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      +...|..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+-.+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345666666777777777777777777777666666677777777777777777777777666543 2234555555555


Q ss_pred             HHccCCchHHHHHHHHHHhc
Q 010830          192 ICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~  211 (499)
                      +... |++++|...|++..+
T Consensus        89 ~~~~-g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           89 RFDM-ADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHc-cCHHHHHHHHHHHHH
Confidence            5555 666666666665544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=5.6e-05  Score=72.08  Aligned_cols=200  Identities=10%  Similarity=0.016  Sum_probs=142.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCchHHHHHHHHHHhcc--CCC
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDP  215 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~  215 (499)
                      .+.+.+.|++++|++.|..+.+......                ...+..+...|... |++++|.+++..+...  ..+
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence            4567788999999999999976532111                12467788889999 9999999999887541  112


Q ss_pred             CH----HHHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CC-
Q 010830          216 DG----DSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NC-  285 (499)
Q Consensus       216 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-  285 (499)
                      +.    .+.+.+-..+...|+.+.|.++++.....   .+..+.-..++..+...|...|++++|..++++....  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            21    23344444555678999999988876542   2333334567888999999999999999999887642  11 


Q ss_pred             -CC-CHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC--CC--CHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          286 -FP-TLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNL--MP--NLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       286 -~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                       .+ ...++..++..|...|++++|..+++........+  ++  -...+..+...+...+++++|...|.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             11 24577888999999999999999998876431001  11  135677777888899999999988877754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.23  E-value=1.9e-05  Score=66.27  Aligned_cols=129  Identities=13%  Similarity=0.006  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCH----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----------------PTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ...+..+...+.+.|++++|++.|++..+....+.                .+|..+..+|...|++++|+..++...+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34566777888888999999999988887654333                78888888999999999999999988776


Q ss_pred             CCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 010830          177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN-KTFGEM  243 (499)
Q Consensus       177 g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~  243 (499)
                      . +.+...+..+..++... |++++|...|++..+..+.+...+..+...+...++.+++. ..|..+
T Consensus       118 ~-p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             C-cccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 44667777788888888 99999999998887766667778888887777777766665 444444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.20  E-value=2.9e-05  Score=59.79  Aligned_cols=55  Identities=16%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             HHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 010830          296 LDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMV  353 (499)
Q Consensus       296 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  353 (499)
                      ...+.+.|++++|+..|++.++..   +.+...|+.+..+|.+.|++++|++.+++..
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            333444444444444444444332   2233444444444444444444444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=2.1e-05  Score=58.61  Aligned_cols=95  Identities=13%  Similarity=0.007  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCC--CHhhHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP--TLKFFSNAL  296 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li  296 (499)
                      .+..+...+.+.|++++|...|++..+.   .|.+...|..+...+...|++++|++.+++..+.. +.  +...+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            3334444444444444444444444332   23333444444444444444444444444444332 11  233444444


Q ss_pred             HHHHHc-CCHhHHHHHHHHHHh
Q 010830          297 DILVKL-NDSTHAVQLWDIMVG  317 (499)
Q Consensus       297 ~~~~~~-~~~~~a~~~~~~~~~  317 (499)
                      .++.+. |++++|.+.++...+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhh
Confidence            444444 444444444444444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.18  E-value=3.8e-05  Score=59.79  Aligned_cols=97  Identities=13%  Similarity=0.067  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL  296 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  296 (499)
                      ...+..+...+.+.|++++|...|++..+.   .|++...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            344444444444444444444444444332   33344444444444444444444444444444322 11233444444


Q ss_pred             HHHHHcCCHhHHHHHHHHHHh
Q 010830          297 DILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       297 ~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .++...|++++|...|+...+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            444444555555444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.18  E-value=1.9e-05  Score=60.71  Aligned_cols=25  Identities=12%  Similarity=0.248  Sum_probs=10.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          257 YETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       257 ~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      |..+...+.+.|++++|.+.|++..
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3333344444444444444444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.18  E-value=3.4e-05  Score=62.45  Aligned_cols=99  Identities=10%  Similarity=0.044  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      +...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++... |++++|+..|++..+..+.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34567777778888888888888888876653 33566667777777777 88888888887776655666777777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhHc
Q 010830          226 GWEKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~  246 (499)
                      +|.+.|++++|.+.|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888777554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.16  E-value=2e-05  Score=60.60  Aligned_cols=62  Identities=11%  Similarity=0.040  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      ..|..+...+...|++++|...|+...+..+.+...+..+...|...|++++|...++...+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            45556666666677777777777766666655666666666666666677666666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=3e-05  Score=62.18  Aligned_cols=133  Identities=13%  Similarity=0.060  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----h
Q 010830          327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PT----P  396 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~  396 (499)
                      .++..+...|...|++++|...+++..+.... .+    ...+..+...+...|++++|...+++..+.... .+    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34555555566666666666666555432000 01    124555566666666666666666665542100 11    2


Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHC----CCC-ChHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          397 LNCATAITMLLDADEPEIAIEIWNYILEN----GIL-PLEASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       397 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      ..+..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34555566666677777777766665531    111 1123455566667777777777777776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.08  E-value=2.9e-05  Score=59.19  Aligned_cols=91  Identities=13%  Similarity=0.053  Sum_probs=43.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL  302 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  302 (499)
                      +...+.+.|++++|...|++..+.   .|++...|..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            344444455555555555554332   44444455555555555555555555555444432 11233444444555555


Q ss_pred             CCHhHHHHHHHHHHh
Q 010830          303 NDSTHAVQLWDIMVG  317 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~  317 (499)
                      |++++|...+++.++
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.07  E-value=4.6e-05  Score=58.07  Aligned_cols=88  Identities=13%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      +...+.+.|++++|+..|+...+..+.+...|..+..++...|++++|+..|++..+.. +-+...+..+..++... |+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~-g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE-HN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CC
Confidence            33444445555555555555555444444455555555555555555555554444331 11233333333333333 44


Q ss_pred             hHHHHHHHHH
Q 010830          199 TSRALEFLNR  208 (499)
Q Consensus       199 ~~~a~~~~~~  208 (499)
                      +++|+..+++
T Consensus       101 ~~~A~~~~~~  110 (121)
T 1hxi_A          101 ANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.07  E-value=9.9e-05  Score=56.68  Aligned_cols=49  Identities=14%  Similarity=0.046  Sum_probs=22.7

Q ss_pred             CchHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          197 NQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      |++++|...|+++.+..+.+   ...+..+...+.+.|++++|...|+++.+
T Consensus        53 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           53 RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444444444433322222   33444445555555555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.06  E-value=3.3e-05  Score=61.89  Aligned_cols=25  Identities=16%  Similarity=-0.072  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEM  243 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~  243 (499)
                      ++..+...+...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3344444455555555555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.06  E-value=0.00014  Score=55.73  Aligned_cols=97  Identities=12%  Similarity=0.027  Sum_probs=62.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHH
Q 010830          117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLL  189 (499)
Q Consensus       117 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll  189 (499)
                      ..+...+...|++++|.+.|+...+..+.+.   ..+..+..++...|++++|...|+...+..  |+    ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence            3445566677777777777777776654443   466667777777777777777777776542  32    44455566


Q ss_pred             HHHHccCCchHHHHHHHHHHhccCCCC
Q 010830          190 SAICRQENQTSRALEFLNRVKKIVDPD  216 (499)
Q Consensus       190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~  216 (499)
                      .++... |++++|...|+.+.+..+.+
T Consensus        84 ~~~~~~-g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           84 LSQYGE-GKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHCCCC
Confidence            666666 77777777777765543333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.00  E-value=1.9e-05  Score=76.26  Aligned_cols=119  Identities=13%  Similarity=-0.049  Sum_probs=71.7

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS  200 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  200 (499)
                      ..+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+-.++... |+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~-g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL-GKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH-TCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHH
Confidence            344556777777777777766666666677777777777777777777777766553 23455566666666666 6677


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 010830          201 RALEFLNRVKKIVDPDGDSFAILLEG--WEKEGNVEEANKTFG  241 (499)
Q Consensus       201 ~a~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~  241 (499)
                      +|++.|++..+..+.+...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77766666655333344444444444  666677777777766

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.98  E-value=6.9e-05  Score=69.65  Aligned_cols=139  Identities=11%  Similarity=0.006  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC  193 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  193 (499)
                      ..|..+...+.+.|++++|++.|++..+...       .    .......       +...+.. .-+...|..+-.++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-------~----~~~~~~~-------~~~~~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-------G----SRAAAED-------ADGAKLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------H----HHHHSCH-------HHHGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-------c----CccccCh-------HHHHHHH-HHHHHHHHHHHHHHH
Confidence            3466666677777777777777766654100       0    0000000       0000000 112344555555555


Q ss_pred             ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHH
Q 010830          194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA  273 (499)
Q Consensus       194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a  273 (499)
                      +. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++..+.   .|++...+..+...+.+.++.+++
T Consensus       285 ~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          285 KM-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hc-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            55 66666666666655544455666666666666777777777777666443   555566666666666666666655


Q ss_pred             HH
Q 010830          274 LK  275 (499)
Q Consensus       274 ~~  275 (499)
                      .+
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.98  E-value=0.0001  Score=70.80  Aligned_cols=95  Identities=16%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHH
Q 010830          183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI  262 (499)
Q Consensus       183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~  262 (499)
                      ..|..+-.++.+. |++++|+..+++..+..+.+...|..+..+|...|++++|...|++..   .+.|++...+..+..
T Consensus       318 ~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~  393 (457)
T 1kt0_A          318 AAFLNLAMCYLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence            4455555555555 666666666666555445556666666667777777777777777663   335656666666666


Q ss_pred             HHhcCCCHHHHHH-HHHHHh
Q 010830          263 TLIRGKQVDEALK-FLRVMK  281 (499)
Q Consensus       263 ~~~~~~~~~~a~~-~~~~m~  281 (499)
                      ++.+.++.+++.+ ++..|.
T Consensus       394 ~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          394 CQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            6666666666553 344443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.97  E-value=8e-05  Score=71.55  Aligned_cols=146  Identities=10%  Similarity=-0.040  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      ...|..+...|.+.|++++|...|++..+.  .|+...          . . .+...+    ..   ......|..+..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-~-~~~~~~----~~---~~~~~~~~nla~~  326 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------L-S-EKESKA----SE---SFLLAAFLNLAMC  326 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------C-C-HHHHHH----HH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------C-C-hHHHHH----HH---HHHHHHHHHHHHH
Confidence            445666777777777777777777776543  111100          0 0 000000    00   0124677888888


Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST  306 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  306 (499)
                      |.+.|++++|+..|++..+.   .|++...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+
T Consensus       327 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998654   67788889999999999999999999999888754 224567777778888888887


Q ss_pred             HHHH-HHHHHHh
Q 010830          307 HAVQ-LWDIMVG  317 (499)
Q Consensus       307 ~a~~-~~~~~~~  317 (499)
                      ++.+ ++..|..
T Consensus       403 ~a~~~~~~~~f~  414 (457)
T 1kt0_A          403 ERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHh
Confidence            7663 4555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.97  E-value=1.8e-05  Score=59.91  Aligned_cols=85  Identities=8%  Similarity=-0.025  Sum_probs=68.4

Q ss_pred             cCCchhHHHHHHHhcCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010830           92 YDSPSSAVDFFRWAGRG---QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM  168 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~  168 (499)
                      .|++++|+..|+.+.+.   .+.+...|..+...|.+.|++++|++.|++..+.++.+..++..+..++...|++++|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            46778888888888764   355677888888899999999999999999988888788888889999999999999999


Q ss_pred             HHHHHHhC
Q 010830          169 SFDVMSMH  176 (499)
Q Consensus       169 ~~~~m~~~  176 (499)
                      .|++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98887654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.96  E-value=3.3e-05  Score=70.96  Aligned_cols=147  Identities=10%  Similarity=-0.074  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..+..+...+.+.|++++|...|++..+.  .|+...       +... ++.+++...+.         ..+|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~-~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLY-GKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCC-HHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhc-ccHHHHHHHHH---------HHHHHHHHHHH
Confidence            34666677777778888888888776643  333221       1122 33333332221         13566677777


Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHH-HHHcCCH
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDI-LVKLNDS  305 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~  305 (499)
                      .+.|++++|...+++..+.   .|++...|..+..+|...|++++|+..|++..+..  |+ ...+..+... ....+..
T Consensus       241 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777543   56666777777777777777777777777766543  32 2333333333 2234556


Q ss_pred             hHHHHHHHHHHhc
Q 010830          306 THAVQLWDIMVGI  318 (499)
Q Consensus       306 ~~a~~~~~~~~~~  318 (499)
                      +.+..+|..+...
T Consensus       316 ~~a~~~~~~~l~~  328 (338)
T 2if4_A          316 QKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCC
Confidence            6677777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=0.00062  Score=67.01  Aligned_cols=175  Identities=9%  Similarity=-0.048  Sum_probs=144.7

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-  161 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-  161 (499)
                      ...++|++.++.+....+-+..+|+.--.++.+.|+          ++++++.++.+.+.++.+..+|+.-...+.+.| 
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            345788999998888788888899988888877777          899999999999999999999999999999999 


Q ss_pred             -ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---------
Q 010830          162 -KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---------  230 (499)
Q Consensus       162 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------  230 (499)
                       +++++++.++++.+.. .-+..+|+.--..+.+. | .++++++.++++.+..+.|...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             7799999999998775 55778888877777777 6 889999999988887778888888877777663         


Q ss_pred             -----CCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHH
Q 010830          231 -----GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE  272 (499)
Q Consensus       231 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~  272 (499)
                           +.++++.+.+++....   .|++...|+.+-..+.+.++.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence                 5578888888888654   78888899988888888776444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.95  E-value=9.1e-05  Score=68.84  Aligned_cols=139  Identities=12%  Similarity=0.024  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 010830          148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW  227 (499)
Q Consensus       148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~  227 (499)
                      ..+..+...+.+.|++++|++.|++..+.  .++.          ... ...       +......+.+..+|..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~-~~~-------~~~~~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAA-AED-------ADGAKLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHH-SCH-------HHHGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccc-cCh-------HHHHHHHHHHHHHHHHHHHHH
Confidence            34777888899999999999999887642  0100          000 111       111111233567888999999


Q ss_pred             HhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhH
Q 010830          228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH  307 (499)
Q Consensus       228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~  307 (499)
                      .+.|++++|.+.+++..+   +.|++...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...++.++
T Consensus       284 ~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999954   478888999999999999999999999999988754 2256677777777888787777


Q ss_pred             HHH
Q 010830          308 AVQ  310 (499)
Q Consensus       308 a~~  310 (499)
                      +.+
T Consensus       360 a~k  362 (370)
T 1ihg_A          360 KEK  362 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.94  E-value=3.3e-05  Score=58.46  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=38.3

Q ss_pred             CChhHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010830          161 GKYDEAVMSFDVMSMHGV--EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK  238 (499)
Q Consensus       161 g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~  238 (499)
                      |++++|+..|++..+.+.  +-+...+..+...+... |++++|...|++..+..+.+...+..+..++.+.|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            445555555555544320  11223334444444444 555555555555444334444555555555555555555555


Q ss_pred             HHHHHhH
Q 010830          239 TFGEMVE  245 (499)
Q Consensus       239 ~~~~~~~  245 (499)
                      .|++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.94  E-value=2.2e-05  Score=75.89  Aligned_cols=121  Identities=13%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 010830          153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN  232 (499)
Q Consensus       153 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  232 (499)
                      +...+.+.|++++|.+.|++..+.. +.+...|..+..++.+. |++++|+..+++..+..+.+...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3445667889999999998887653 33577788888888888 899999999988877666778888888888999999


Q ss_pred             HHHHHHHHHHHhHccCCCCchHHhHHHHHHH--HhcCCCHHHHHHHHH
Q 010830          233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT--LIRGKQVDEALKFLR  278 (499)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~--~~~~~~~~~a~~~~~  278 (499)
                      +++|.+.|++..+.   .|++...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999888664   55555566666655  777788888888887

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.86  E-value=6.1e-05  Score=69.16  Aligned_cols=149  Identities=9%  Similarity=0.053  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ...|..+...+.+.|++++|+..|++..+....+.        .+...|+.+++...+.          ...|..+-.++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            45677888889999999999999999877643221        1223334444333221          12566666777


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHH-HhcCCCHH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVD  271 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~-~~~~~~~~  271 (499)
                      .+. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++..   .+.|++...+..+... ....+..+
T Consensus       241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C------------------------
T ss_pred             HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            777 888888888888766556677888888888888888888888888874   4467666677766666 34456677


Q ss_pred             HHHHHHHHHhhC
Q 010830          272 EALKFLRVMKGE  283 (499)
Q Consensus       272 ~a~~~~~~m~~~  283 (499)
                      ++.++|..|...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            777788777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.86  E-value=0.00023  Score=57.30  Aligned_cols=64  Identities=20%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE  283 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  283 (499)
                      ...|..+..+|.+.|++++|...+++..+.   .|.+...|..+..+|...|++++|...|++..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            344455555555555555555555555332   4445555555555555555555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.82  E-value=0.00013  Score=58.86  Aligned_cols=29  Identities=14%  Similarity=-0.028  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED  142 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~  142 (499)
                      ..+......+.+.|++++|+..|....+.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~   40 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTR   40 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34555666677777777777777666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.78  E-value=0.00018  Score=69.04  Aligned_cols=99  Identities=15%  Similarity=0.060  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCC-C
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF-----HGAF-P  359 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p  359 (499)
                      +++.+...|...|++++|+.++++.++     .|.+.+-...+++.|...|...|++++|+.++++..+     .|.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            334444444444444444444443331     1221222344555666666666666666666555442     1211 2


Q ss_pred             CH-HhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010830          360 DS-LTYNMIFECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       360 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      ++ .+.+.+-.++...+.+++|+.++..+.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 2233444555566666666666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.77  E-value=0.00028  Score=67.77  Aligned_cols=126  Identities=13%  Similarity=-0.098  Sum_probs=57.7

Q ss_pred             hcCCHHHHHHHHHHHhHc----c-CCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CC-CCCC-HhhHHHHH
Q 010830          229 KEGNVEEANKTFGEMVER----F-EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----EN-CFPT-LKFFSNAL  296 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~----~-~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li  296 (499)
                      ..|++++|+.++++..+.    + .-.|+...+++.|...|...|++++|+.++++..+     .| -.|+ ..+++.|.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445555555444443321    1 11233334455555555555555555555544332     11 1111 23444555


Q ss_pred             HHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          297 DILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       297 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      ..|...|++++|+.++++.++     .|.+.+....+.+.+-.++...+.+++|..+|..+.+
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554432     1322222333445555555556666666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.76  E-value=0.00025  Score=53.18  Aligned_cols=80  Identities=6%  Similarity=-0.042  Sum_probs=66.4

Q ss_pred             hhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830           96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus        96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      +.|+..|+.+.+..+.+...|..+...+...|++++|+..|++..+.++.+...|..+..+|...|++++|...|+...+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35677777777767778888888888888899999999999888888877788888888888888899888888888764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.73  E-value=4.1e-05  Score=57.00  Aligned_cols=65  Identities=9%  Similarity=-0.029  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      +...|..+...+.+.|++++|++.|++..+..+.+...|..+..++.+.|++++|++.|++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45677778888888888888888888888887777888888888888888888888888888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.72  E-value=0.0023  Score=62.97  Aligned_cols=137  Identities=7%  Similarity=-0.099  Sum_probs=82.8

Q ss_pred             hCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 010830          125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR  194 (499)
Q Consensus       125 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  194 (499)
                      .....++|++.++.+...++.+..+|+.--..+...|+          ++++++.++.+.+.. +-+..+|+.---.+.+
T Consensus        41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            34455677888888888888777888877666666665          666666666665543 3344555555555555


Q ss_pred             cCC--chHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830          195 QEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR  266 (499)
Q Consensus       195 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~  266 (499)
                      . +  +++++++.++++.+..+.|..+|+.-...+.+.| .++++.+.++++.+   ..|.|..+|+.....+.+
T Consensus       120 l-~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          120 L-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             C-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHH
T ss_pred             c-ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHh
Confidence            4 5  4466666666665555555666665555555555 55666666555533   355555555555444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.66  E-value=0.00052  Score=54.17  Aligned_cols=64  Identities=16%  Similarity=0.025  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHc----cCCCCchHHhH----HHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEHVLAY----ETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .|..+..++.+.|++++|+..+++..+.    ..+.|++...|    .....++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6667777777777777777777766431    23377777777    7788888888888888888877654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.64  E-value=0.0016  Score=50.64  Aligned_cols=10  Identities=10%  Similarity=0.245  Sum_probs=3.6

Q ss_pred             hhHHHHHHHH
Q 010830          412 PEIAIEIWNY  421 (499)
Q Consensus       412 ~~~a~~~~~~  421 (499)
                      +++|.++|++
T Consensus       113 ~~~A~~~~~~  122 (138)
T 1klx_A          113 EKQAVKTFEK  122 (138)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.62  E-value=0.0022  Score=49.91  Aligned_cols=110  Identities=5%  Similarity=-0.048  Sum_probs=55.1

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHH
Q 010830          341 DVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAI  416 (499)
Q Consensus       341 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  416 (499)
                      ++++|++.|++..+.|. ++..    +-..|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            34455555555554431 1111    3333444444555555555555543   33444444444444    45566666


Q ss_pred             HHHHHHHHCCCCChHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 010830          417 EIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       417 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~  461 (499)
                      ++|++..+.|   +...+..|-..|..    .+++++|.+++++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666555544   23444445555555    566666666666666555

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.56  E-value=0.00047  Score=51.66  Aligned_cols=77  Identities=12%  Similarity=-0.039  Sum_probs=39.3

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       202 a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      |+..|++..+..+.+...+..+...|...|++++|.+.|++..+.   .|++...|..+..++...|++++|...|++..
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444443333444555555555555555555555555555432   34444455555555555555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.48  E-value=0.0014  Score=51.68  Aligned_cols=61  Identities=18%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          184 AVNSLLSAICRQENQTSRALEFLNRVKKI-------VDPDGDSF----AILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      .|+.+-.++.+. |++++|+..+++..+.       .+.+...|    .....++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGL-RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            455555555555 5666666555554443       44456677    8888889999999999999988855

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.47  E-value=7.4e-05  Score=55.58  Aligned_cols=61  Identities=15%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .+..+...+.+.|++++|.+.|++..+.   .|++...|..+..++.+.|++++|++.+++..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3444444444555555555555544332   343444444455555555555555555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.45  E-value=0.0014  Score=46.30  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      +...|..+...+...|++++|...|++..+..+.+..++..+...+...|++++|.+.|++..+.. +.+...+..+-..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            345677777777888888888888888877776677777778888888888888888887776542 2234444444333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.39  E-value=0.00099  Score=48.44  Aligned_cols=66  Identities=11%  Similarity=0.057  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010830          110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM  175 (499)
Q Consensus       110 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  175 (499)
                      +.+...|..+...+.+.|++++|+..|++..+.++.+...|..+..+|...|++++|.+.|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            456778888889999999999999999999888887788899999999999999999999988764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.36  E-value=0.0016  Score=45.93  Aligned_cols=60  Identities=18%  Similarity=0.286  Sum_probs=26.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      +..+...+.+.|++++|.+.|++..+.   .|++...+..+...+.+.|++++|+..+++..+
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            333444444444444444444444332   233334444444444444444444444444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.34  E-value=0.00052  Score=54.05  Aligned_cols=97  Identities=11%  Similarity=-0.056  Sum_probs=77.2

Q ss_pred             CchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--
Q 010830           94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF----------EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--  161 (499)
Q Consensus        94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--  161 (499)
                      .+++|++.++.+....+.+...|+.+..++...+++          ++|+..|++..+.++.+..+|..+..+|...|  
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence            456788888877777788889999888888888765          59999999999998888889999999998774  


Q ss_pred             ---------ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          162 ---------KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       162 ---------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                               ++++|++.|++..+.  .|+...|...+...
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~  134 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT  134 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence                     788888888888765  67766665555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.28  E-value=0.0015  Score=47.45  Aligned_cols=65  Identities=23%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 010830          215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (499)
Q Consensus       215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (499)
                      .+...+..+...|.+.|++++|.+.|++..+.   .|++...|..+..+|.+.|++++|++.|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34566666777777777777777777777553   555566677777777777777777777766543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.16  E-value=0.001  Score=52.43  Aligned_cols=95  Identities=16%  Similarity=0.057  Sum_probs=54.8

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN----------VEEANKTFGEMVERFEWNPEHVLAYETFLITLIR  266 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~  266 (499)
                      +.+++|.+.++...+..+.+...|+.+..++...++          +++|+..|++..+   +.|++..+|..+..+|..
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHH
Confidence            445555555555544444455555555555555544          3477777777643   366666777777777766


Q ss_pred             CC-----------CHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 010830          267 GK-----------QVDEALKFLRVMKGENCFPTLKFFSNAL  296 (499)
Q Consensus       267 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li  296 (499)
                      .|           ++++|++.|++..+..  |+...|...+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al  131 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL  131 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            53           6667777666666543  5544444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.90  E-value=0.039  Score=50.03  Aligned_cols=65  Identities=6%  Similarity=-0.007  Sum_probs=29.8

Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      |.+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.+++...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3344444444444444455555555555444433  3443444444444444555555544444444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.89  E-value=0.025  Score=51.27  Aligned_cols=154  Identities=14%  Similarity=0.127  Sum_probs=88.7

Q ss_pred             cCCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC
Q 010830          212 IVDPDGDSFAILLEGWE--KEG---NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF  286 (499)
Q Consensus       212 ~~~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  286 (499)
                      ..+.+...|...+++..  ..+   +..+|..+|++..+.   .|+....|..+..+|..          +...  .+. 
T Consensus       189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~----------~~~~--~~~-  252 (372)
T 3ly7_A          189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIV----------RHSQ--HPL-  252 (372)
T ss_dssp             HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH----------HHHH--SCC-
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH----------Hhcc--CCC-
Confidence            34566677777665543  223   356788888888654   77766677666655540          0000  000 


Q ss_pred             CCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 010830          287 PTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNM  366 (499)
Q Consensus       287 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  366 (499)
                       +......          ...+.+   ....... .+.+..+|..+...+...|++++|...+++....+  |+...|..
T Consensus       253 -~~~~~~~----------l~~a~~---a~~a~~~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~l  315 (372)
T 3ly7_A          253 -DEKQLAA----------LNTEID---NIVTLPE-LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVL  315 (372)
T ss_dssp             -CHHHHHH----------HHHHHH---HHHTCGG-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             -chhhHHH----------HHHHHH---HHHhccc-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHH
Confidence             0000000          011111   1111100 24567777777666666688888888888877753  66666666


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 010830          367 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA  400 (499)
Q Consensus       367 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  400 (499)
                      +...+.-.|++++|.+.|++....  .|...+|.
T Consensus       316 lG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~  347 (372)
T 3ly7_A          316 LGKVYEMKGMNREAADAYLTAFNL--RPGANTLY  347 (372)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence            677777788888888888777764  36655544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.81  E-value=0.015  Score=41.27  Aligned_cols=69  Identities=6%  Similarity=-0.031  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010830          109 QRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG  177 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  177 (499)
                      .+.|+..+..+..++...++   .++|..+|++..+.++.+..+...+...+.+.|++++|...|+.+.+..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45677888888888865554   7999999999999999999999999999999999999999999998763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.78  E-value=0.028  Score=58.17  Aligned_cols=152  Identities=12%  Similarity=0.046  Sum_probs=91.1

Q ss_pred             HHHhcCCHHHHHH-HHHHHh-HccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830          226 GWEKEGNVEEANK-TFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN  303 (499)
Q Consensus       226 ~~~~~g~~~~a~~-~~~~~~-~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  303 (499)
                      .....+++++|.+ ++..+. .       +  ....++..+.+.|.+++|+++.+.       +     ..-.......|
T Consensus       608 ~~~~~~~~~~a~~~~l~~i~~~-------~--~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~  666 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNVEGK-------D--SLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVG  666 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGCCCH-------H--HHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHhcCCch-------H--HHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcC
Confidence            3445677887766 443222 1       1  236677777788888888766531       1     11133456678


Q ss_pred             CHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 010830          304 DSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF  383 (499)
Q Consensus       304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  383 (499)
                      +++.|.++.+.+        .+...|..+...+.+.++++.|.+.|.++.+         |..+...+...|+.+...++
T Consensus       667 ~~~~A~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          667 QLTLARDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             CHHHHHHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            888888775422        3677888888888888888888888887754         34455555556666665555


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 010830          384 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY  421 (499)
Q Consensus       384 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  421 (499)
                      .+.....|      -++....+|.+.|++++|.+++.+
T Consensus       730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            55554443      123333344445555555555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.74  E-value=0.0045  Score=58.39  Aligned_cols=85  Identities=9%  Similarity=-0.049  Sum_probs=52.1

Q ss_pred             CchHHHHHHHHHHhc----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHH
Q 010830          197 NQTSRALEFLNRVKK----IVDPD----GDSFAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLIT  263 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~----~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~  263 (499)
                      |++++|+.++++...    .+.++    ..+++.+..+|...|++++|+.++++..+-     ..-.|+...+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            667777777766432    12222    356677777777777777777777665432     12234445566667777


Q ss_pred             HhcCCCHHHHHHHHHHHh
Q 010830          264 LIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       264 ~~~~~~~~~a~~~~~~m~  281 (499)
                      |...|++++|+.++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            777777777777666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.59  E-value=0.013  Score=55.35  Aligned_cols=90  Identities=9%  Similarity=-0.034  Sum_probs=44.5

Q ss_pred             HHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CC-CCCC-HhhHHH
Q 010830          227 WEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----EN-CFPT-LKFFSN  294 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~  294 (499)
                      +.+.|++++|+.++++..+.     ..-.|....+++.+...|...|++++|+.++++..+     .| ..|+ ..+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            33455555555555555432     011232334555555556666666666655555432     11 1111 234555


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMV  316 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~  316 (499)
                      |...|...|++++|+.++++..
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Confidence            5566666666666666655544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.53  E-value=0.01  Score=55.91  Aligned_cols=64  Identities=8%  Similarity=0.053  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          291 FFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       291 ~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +++.+..+|...|++++|+.++++.++     .|.+.+-...+++.|...|...|++++|+.++++..+
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            444455555555555555555544432     1221222344566666666666666666666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.46  E-value=0.0076  Score=43.29  Aligned_cols=48  Identities=15%  Similarity=0.269  Sum_probs=20.4

Q ss_pred             CchHHHHHHHHHHhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          197 NQTSRALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                      |++++|...|++..+..+.+.. .+..+...|...|++++|.+.|++..
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444444444443332233333 44444444444444444444444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.42  E-value=0.12  Score=53.34  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             HHHhcCChhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 010830          156 SYCGAGKYDEAVM-SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE  234 (499)
Q Consensus       156 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~  234 (499)
                      .....+++++|.+ ++..+      ++......++..+.+. |..+.|.++.+.        .   ..-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~-~~~~~a~~~~~~--------~---~~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQ-EYYEEALNISPD--------Q---DQKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHT-TCHHHHHHHCCC--------H---HHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhC-CChHHheecCCC--------c---chheehhhhcCCHH
Confidence            3345566666655 43111      1012224455555555 666666655421        1   11123345567777


Q ss_pred             HHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHH
Q 010830          235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI  314 (499)
Q Consensus       235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  314 (499)
                      +|.++.+.+.        +...|..+...+.+.++++.|.+.|.++.+         |..+...+...|+.+...++-+.
T Consensus       670 ~A~~~~~~~~--------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          670 LARDLLTDES--------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHHTTCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhC--------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            7777654431        445677777777777777777777776543         33444445555555555555444


Q ss_pred             HHhcC
Q 010830          315 MVGIG  319 (499)
Q Consensus       315 ~~~~~  319 (499)
                      ....|
T Consensus       733 a~~~~  737 (814)
T 3mkq_A          733 AETTG  737 (814)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            44433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.40  E-value=0.015  Score=54.89  Aligned_cols=89  Identities=10%  Similarity=-0.037  Sum_probs=70.6

Q ss_pred             cCCCHHHHHHHHHHHhhC--C-CCCC----HhhHHHHHHHHHHcCCHhHHHHHHHHHHh-----cCCCCCCCHhHHHHHH
Q 010830          266 RGKQVDEALKFLRVMKGE--N-CFPT----LKFFSNALDILVKLNDSTHAVQLWDIMVG-----IGFNLMPNLIMYNAVI  333 (499)
Q Consensus       266 ~~~~~~~a~~~~~~m~~~--~-~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li  333 (499)
                      +.|++++|+.++++..+.  . +.|+    ..+++.+..+|...|++++|+.++++.++     .|.+.+....+++.|.
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            567999999999988752  2 2233    45788899999999999999999988764     2433444567899999


Q ss_pred             HHHHcCCChHHHHHHHHHHHH
Q 010830          334 GLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       334 ~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      ..|...|++++|+.++++..+
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHH
Confidence            999999999999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.27  Score=39.23  Aligned_cols=128  Identities=10%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCH
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS  305 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~  305 (499)
                      ...+.|+++.|.++.+++.        +...|..|.......|+++-|.+.|.+..+         |..+.-.|.-.|+.
T Consensus        14 LAL~lg~l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKLN--------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHhcCCHHHHHHHHHHhC--------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            3456788888888776651        455788888888888888888888876543         44455556667777


Q ss_pred             hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 010830          306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH  385 (499)
Q Consensus       306 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  385 (499)
                      +...++-+.....|     +   ++.-...+.-.|+++++.++|.+..+   -|..      .......|..+.|.++.+
T Consensus        77 e~L~kla~iA~~~g-----~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~  139 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE-----D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLE  139 (177)
T ss_dssp             HHHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc-----c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHH
Confidence            77666666555554     1   34444455566777777777754322   1111      111123456666776666


Q ss_pred             HH
Q 010830          386 EM  387 (499)
Q Consensus       386 ~~  387 (499)
                      .+
T Consensus       140 ~~  141 (177)
T 3mkq_B          140 QA  141 (177)
T ss_dssp             HT
T ss_pred             Hh
Confidence            55

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.35  E-value=0.36  Score=41.96  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcc-CCh
Q 010830          342 VDNVFRFFDQMVFHGAFPD---SLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEP  412 (499)
Q Consensus       342 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~  412 (499)
                      ...|...+++..+  +.|+   ...|..+...|.+.     |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4566666666666  3455   34677777777773     78888888888887754222356666777777764 778


Q ss_pred             hHHHHHHHHHHHCCCC--ChHHHHHH
Q 010830          413 EIAIEIWNYILENGIL--PLEASANE  436 (499)
Q Consensus       413 ~~a~~~~~~m~~~~~~--p~~~~~~~  436 (499)
                      +++.+.+++.......  |+....+.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            8888888887775555  55444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.24  E-value=0.062  Score=38.06  Aligned_cols=68  Identities=10%  Similarity=0.030  Sum_probs=44.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          214 DPDGDSFAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       214 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      +.|...+..+..++...++   .++|..++++..+.   .|+++.....+...+.+.|++++|+..|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3455555666665544433   56777777777543   66677777777777777777777777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.17  E-value=0.035  Score=39.59  Aligned_cols=58  Identities=12%  Similarity=0.196  Sum_probs=46.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ....+.+.|++++|++.|+...+..+.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345667778888888888888887777777 8888888888888888888888887765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.97  E-value=0.34  Score=36.36  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 010830          290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA  357 (499)
Q Consensus       290 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  357 (499)
                      ..+...++.+...|+.++-.+++..+...   .+|+....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n---~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKN---NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhcc---CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            33444455555555555555555554332   244555555555555555555555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.97  E-value=0.54  Score=40.91  Aligned_cols=90  Identities=9%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             HhHHHHHHHHHHhcCCCCCCC---HhHHHHHHHHHHcC-----CChHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhc
Q 010830          305 STHAVQLWDIMVGIGFNLMPN---LIMYNAVIGLLCNN-----DDVDNVFRFFDQMVFHGAFP--DSLTYNMIFECLIKN  374 (499)
Q Consensus       305 ~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~  374 (499)
                      ...|...+++.++.    .|+   ...|..+...|.+.     |+.++|.+.|++..+.  .|  +..++......++..
T Consensus       179 l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          179 VHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHh
Confidence            46777778888874    455   66888888888884     8999999999999884  45  367777777778774


Q ss_pred             -CCHhHHHHHHHHHHHCCCC--CChhhHH
Q 010830          375 -KRVHEVEKFFHEMIKNEWQ--PTPLNCA  400 (499)
Q Consensus       375 -g~~~~a~~~~~~~~~~~~~--p~~~~~~  400 (499)
                       |+.+++.+.+++.+.....  |+....+
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             cCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence             8999999999999987655  5544333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.75  E-value=0.085  Score=40.99  Aligned_cols=84  Identities=8%  Similarity=-0.070  Sum_probs=59.4

Q ss_pred             hHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG---RFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      .+.+.|.......+++..+...+.-++++++   ++++++.+|+...+.+.|  ....+-.|.-+|.+.|++++|.+.++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444555443444578888888888888887   566888888888877633  35566667777888888888888888


Q ss_pred             HHHhCCCCcCH
Q 010830          172 VMSMHGVEQDV  182 (499)
Q Consensus       172 ~m~~~g~~p~~  182 (499)
                      .+.+.  .|+.
T Consensus        96 ~lL~i--eP~n  104 (152)
T 1pc2_A           96 GLLQT--EPQN  104 (152)
T ss_dssp             HHHHH--CTTC
T ss_pred             HHHhc--CCCC
Confidence            88765  5543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.39  E-value=0.6  Score=35.07  Aligned_cols=63  Identities=16%  Similarity=0.066  Sum_probs=33.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 010830          256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIG  319 (499)
Q Consensus       256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  319 (499)
                      ..+..++.+...|+-++-.+++..+.. +.+|+......+..+|.+.|+..++.+++.+.-+.|
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            344455555555555555555555322 223445555555555666666666655555555555

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.38  E-value=0.19  Score=39.03  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=52.0

Q ss_pred             HhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC---ChhHHHHHHHHHHHCCCCC--hHHHHHHHHHHHHhCCChHHHH
Q 010830          377 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEIAIEIWNYILENGILP--LEASANELLVGLRNLGRLSDVR  451 (499)
Q Consensus       377 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~  451 (499)
                      +..+.+-|.+..+.+. ++..+.-.+..++++.+   +.+++..+++...+.. .|  +...+-.|.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3445555665555553 56666666667777766   5557777777777644 23  2344444556677788888888


Q ss_pred             HHHHHHHHc
Q 010830          452 RFAEEMLNR  460 (499)
Q Consensus       452 ~~~~~m~~~  460 (499)
                      +.++.+++.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            888877754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.82  Score=36.46  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHH
Q 010830          147 LPTFASIFDSYCGAGKYDEAVMSFDV  172 (499)
Q Consensus       147 ~~~~~~li~~~~~~g~~~~A~~~~~~  172 (499)
                      ...|..|.......|+++-|.++|..
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            33444444444444444444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.10  E-value=0.29  Score=35.32  Aligned_cols=65  Identities=6%  Similarity=-0.052  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      +...+..+...+.+.|++..|...|+...+.       +......+..+..+|.+.|+++.|...+++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4455556667777777777777777666543       2344566777777777777777777777777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.79  E-value=2.8  Score=39.55  Aligned_cols=166  Identities=11%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCC---HhHHHHHHHHHHcCCChHHHHHHHHHHHH----CCCCCCH--Hh
Q 010830          293 SNALDILVKLNDSTHAVQLWDIMVGIGFNLMPN---LIMYNAVIGLLCNNDDVDNVFRFFDQMVF----HGAFPDS--LT  363 (499)
Q Consensus       293 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~  363 (499)
                      ..|...+...|++.+|.+++..+...-......   ...+...++.|...+++.+|..++.+...    ....|+.  ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            456788888899999999998876432101111   45677778888899999999988887643    2222222  34


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCChhhHHHH----HHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          364 YNMIFECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATA----ITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                      +...+..+...+++.+|...|.++.+. ...-+...+..+    +.+..-.+....-..+.....+....++...|..++
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~  300 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV  300 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence            566677777888999988888777543 111122222211    111111121122223333333322345677888888


Q ss_pred             HHHHhC--CChHHHHHHHHHHH
Q 010830          439 VGLRNL--GRLSDVRRFAEEML  458 (499)
Q Consensus       439 ~~~~~~--g~~~~a~~~~~~m~  458 (499)
                      .+|...  .+++.+.+.++...
T Consensus       301 k~f~~~~L~~~~~~~~~~~~~L  322 (445)
T 4b4t_P          301 KLFTTNELMRWPIVQKTYEPVL  322 (445)
T ss_dssp             HHHHHCCSSSHHHHHHHTCSST
T ss_pred             HHHHhchHhhhHHHHHHHHHHh
Confidence            888764  45666666655443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.66  E-value=0.26  Score=35.55  Aligned_cols=63  Identities=10%  Similarity=0.058  Sum_probs=36.9

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHC------CCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          398 NCATAITMLLDADEPEIAIEIWNYILEN------GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      -+-.+...+...|+++.|...++...+.      .-.....++..|..++.+.|++++|..++++..+.
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3444555555666666666666555431      11234556666666777777777777777766643

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.58  E-value=0.34  Score=37.17  Aligned_cols=51  Identities=8%  Similarity=0.111  Sum_probs=23.0

Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHG  356 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  356 (499)
                      ++.++|.++|+.+++.+..+   ...|-...+--.+.|++.+|.+++......+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            45555555555554332111   4444444444444555555555555544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.22  E-value=0.66  Score=35.62  Aligned_cols=66  Identities=9%  Similarity=0.047  Sum_probs=45.0

Q ss_pred             cCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 010830          409 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF  476 (499)
Q Consensus       409 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  476 (499)
                      .+++++|.++|+.+++.+-.- ..+|-.....-.+.|+...|.+++...+..+.+|. ..+...++-+
T Consensus        73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl  138 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL  138 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence            377888888888886543222 66776666777788888888888888887765543 4455555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.42  Score=48.01  Aligned_cols=127  Identities=13%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCchHHHHHHHHHH-hc------cCCC-CH
Q 010830          149 TFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVA--VNSLLSAICRQENQTSRALEFLNRV-KK------IVDP-DG  217 (499)
Q Consensus       149 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~-~~------~~~~-~~  217 (499)
                      .-..++..+...|+ ++.|..+|+++.+.  .|...+  ...++..+.....+--+|.+++.+. +.      ...+ +.
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~  327 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA  327 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            34455565666666 57788899888765  343332  2233333333311222344443332 11      1111 11


Q ss_pred             ----------HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 010830          218 ----------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM  280 (499)
Q Consensus       218 ----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m  280 (499)
                                .....-.+.+...|+++.|+++-++...   ..|.+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus       328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                      1223334556678999999999998854   48888899999999999999999999888876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.26  E-value=8.6  Score=39.66  Aligned_cols=352  Identities=9%  Similarity=-0.025  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHhCCChH-HHHHHH-HHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFE-QMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLS  190 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~-~a~~~~-~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~  190 (499)
                      +-..+..++...|-.. ..+... +++.+. ......-.+.--+.+..|+.++++.++......+-..+  ...-..+--
T Consensus       341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL  419 (963)
T 4ady_A          341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL  419 (963)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence            3445667777776432 222222 233332 11122223334456778888888888877654211122  233333334


Q ss_pred             HHHccCCchHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHccCCCCchHH--hHHH
Q 010830          191 AICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLEGWEKEGN-VEEANKTFGEMVERFEWNPEHVL--AYET  259 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~--~~~~  259 (499)
                      ++... |..+++..++........        +....-.++.-+.+-.|. -+++.+.+..+... . .+ ...  .-..
T Consensus       420 Gli~a-g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d-d-~~-~~~~~AalA  495 (963)
T 4ady_A          420 GLIYA-GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN-D-SA-TSGEAAALG  495 (963)
T ss_dssp             HHHTT-TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT-C-CH-HHHHHHHHH
T ss_pred             HHhcC-CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-C-CH-HHHHHHHHH
Confidence            45555 555566666555432111        112222333333333332 23445555554432 1 11 111  1223


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH--HHcCCHhHHHHHHHHHHhcCCCCCCCHhHH--HHHHHH
Q 010830          260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL--VKLNDSTHAVQLWDIMVGIGFNLMPNLIMY--NAVIGL  335 (499)
Q Consensus       260 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~li~~  335 (499)
                      +...++-.|+.+....++..+.+..   +..+...+.-++  ...|+.+.+..+.+.+....   .|....-  .++.-+
T Consensus       496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglA  569 (963)
T 4ady_A          496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALA  569 (963)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred             HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence            3444567788888888887766542   333444444444  46788898888888887642   2322222  234456


Q ss_pred             HHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh-hH
Q 010830          336 LCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EI  414 (499)
Q Consensus       336 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~  414 (499)
                      |+..|+.....++++.+.+. ...++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .+
T Consensus       570 yaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~  647 (963)
T 4ady_A          570 YAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQS  647 (963)
T ss_dssp             TTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHH
T ss_pred             hcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHH
Confidence            77888988888899888874 12233333333335555677777777877666644 34444444444444444443 56


Q ss_pred             HHHHHHHHHHCCCCChHHHH-HHH-HHHHHhCCChH----HHHHHHHHH---HH-cCCccCHHHHHHHHHHHHhcccc
Q 010830          415 AIEIWNYILENGILPLEASA-NEL-LVGLRNLGRLS----DVRRFAEEM---LN-RRILIYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       415 a~~~~~~m~~~~~~p~~~~~-~~l-l~~~~~~g~~~----~a~~~~~~m---~~-~~~~p~~~~~~~ll~~~~~~g~~  482 (499)
                      +..++..+..   .+|..+- +++ .-+..-.|..+    +...+++++   .. +.-.++...-..+..+....|+-
T Consensus       648 aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~  722 (963)
T 4ady_A          648 AIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR  722 (963)
T ss_dssp             HHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence            7778888765   2233332 222 23334334322    244444433   32 22345566667777777776643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.26  E-value=0.39  Score=44.49  Aligned_cols=56  Identities=14%  Similarity=0.199  Sum_probs=25.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 010830          152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV  209 (499)
Q Consensus       152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~  209 (499)
                      .++..+...|++++|...+..+.... +-+...|..+|.++.+. |+..+|++.|+.+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            33444444455555554444443321 22444444555555544 5555555554443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.96  E-value=1.7  Score=32.30  Aligned_cols=32  Identities=19%  Similarity=0.169  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV  254 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~  254 (499)
                      .-.+.-++.+.|++++|.+.++.+.+.   .|++.
T Consensus        77 lY~LAvg~yklg~Y~~A~~~~~~lL~~---eP~n~  108 (126)
T 1nzn_A           77 VFYLAVGNYRLKEYEKALKYVRGLLQT---EPQNN  108 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCH
Confidence            344555666666666666666666443   55443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.79  E-value=0.73  Score=34.36  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=56.6

Q ss_pred             cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhH---HHHHHHHHHHCCCCC--hHHHHHHHHHHHHhCCChH
Q 010830          374 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI---AIEIWNYILENGILP--LEASANELLVGLRNLGRLS  448 (499)
Q Consensus       374 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~  448 (499)
                      ...+..+.+-|.+....|. ++..+--.+..++.+..+...   ++.+++.+.+.+ .|  .....-.|.-++.+.|+++
T Consensus        14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence            3344555666666555443 666776677777877776655   777888777654 22  2233344556788899999


Q ss_pred             HHHHHHHHHHHc
Q 010830          449 DVRRFAEEMLNR  460 (499)
Q Consensus       449 ~a~~~~~~m~~~  460 (499)
                      +|.+.++.+++.
T Consensus        92 ~A~~~~~~lL~~  103 (126)
T 1nzn_A           92 KALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988865

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.93  E-value=6.3  Score=34.83  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCcCHHHHHHHHHH
Q 010830          116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS----FDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      |-++..-|.+.+++++|++++..-              ...+.+.|+...|-++    .+...+.+++++......++..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            346667788888888888886433              2334555666655553    5555667788888887777777


Q ss_pred             HHccCCchHHHHHHHHHHhc-----c--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          192 ICRQENQTSRALEFLNRVKK-----I--VDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                      +.........-.++.+.+.+     +  ..-+...+..+...|.+.|++.+|+..|-
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            66531111112233333211     1  23467778888888888888888877664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.28  E-value=1  Score=31.76  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 010830          165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL  223 (499)
Q Consensus       165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  223 (499)
                      ++.+-++.+....+.|++.+..+.+++|-+. +++..|.++|+.++........+|..+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~iK~K~~~~~~iY~~~   85 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDKAGPHKEIYPYV   85 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence            4445555555555556666666666666555 666666666665554333333334333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.16  E-value=9.8  Score=40.86  Aligned_cols=208  Identities=7%  Similarity=-0.048  Sum_probs=98.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHc
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL  302 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  302 (499)
                      ++..+.+.+..+.+.++..-.       |.+...-..+..++...|++++|.+.|.+.-. |+..+....          
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------  879 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------  879 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------
Confidence            344445555555554433222       22444445566778888888888888875421 211110000          


Q ss_pred             CCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHh
Q 010830          303 NDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS----LTYNMIFECLIKNKRVH  378 (499)
Q Consensus       303 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~  378 (499)
                      .....    +..+.........-..-|..++..+.+.+.++.+.++-....+....-+.    ..|..+++++...|+++
T Consensus       880 ~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye  955 (1139)
T 4fhn_B          880 AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD  955 (1139)
T ss_dssp             SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred             hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence            00000    01111110001112334566666666666666666666555443111111    14566666677777777


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHhccCC------------hhHHHHHHHHHHH-C-CCCChHHHHHHHHHHHHhC
Q 010830          379 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADE------------PEIAIEIWNYILE-N-GILPLEASANELLVGLRNL  444 (499)
Q Consensus       379 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~-~-~~~p~~~~~~~ll~~~~~~  444 (499)
                      +|...+-.+-....+  ......|+...+..|.            .++..+++..-.+ . .+...+.-|..|-.-+...
T Consensus       956 ~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B          956 AAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp             GGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence            776666655544322  2344445544444433            3444444433221 1 1111112355555556677


Q ss_pred             CChHHHHHHH
Q 010830          445 GRLSDVRRFA  454 (499)
Q Consensus       445 g~~~~a~~~~  454 (499)
                      |++.+|..++
T Consensus      1034 ~dyR~AA~vm 1043 (1139)
T 4fhn_B         1034 QNYRDAAAII 1043 (1139)
T ss_dssp             HTTSCHHHHH
T ss_pred             CChHHHHHHH
Confidence            7777765543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.59  E-value=3.3  Score=29.18  Aligned_cols=63  Identities=25%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHH
Q 010830          269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG  334 (499)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~  334 (499)
                      +.=++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+.   .....+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~---~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCchhhHHHHHH
Confidence            444566666777777788888888888888888888888888888777552   233445555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.26  E-value=12  Score=35.14  Aligned_cols=246  Identities=9%  Similarity=-0.006  Sum_probs=128.1

Q ss_pred             cCCHHHHHHHHHHHhHccCCC---CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-CCCCCCHhhHHHHHHHH----HH
Q 010830          230 EGNVEEANKTFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDIL----VK  301 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~---p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~----~~  301 (499)
                      .|+++.|.+.+..+.+.....   +........++..|...++++...+.+..+.. .|..+  .....+++.+    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~  106 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS  106 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence            377888888777776531111   11344566778888888888888777766553 33222  2223333332    22


Q ss_pred             cCCHhHHHHHHHHHHhcCCCCCCC--------HhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCC---HHhHHHHH
Q 010830          302 LNDSTHAVQLWDIMVGIGFNLMPN--------LIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPD---SLTYNMIF  368 (499)
Q Consensus       302 ~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll  368 (499)
                      ....+....  ......-..+...        ......|...|...|++.+|.+++.++...  |....   ...+...+
T Consensus       107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~  184 (445)
T 4b4t_P          107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM  184 (445)
T ss_dssp             HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            332222111  1111110001111        123355667777778888888888777642  22111   13455666


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHhccCChhHHHHHHHHHHHC-CCCChHHHHH----HH
Q 010830          369 ECLIKNKRVHEVEKFFHEMIKN----EWQPT--PLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASAN----EL  437 (499)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~----~l  437 (499)
                      +.|...+++..|..++.++...    ...|+  ...|...+..+...+++.+|.+.|.++.+. ...-|...+.    .+
T Consensus       185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~  264 (445)
T 4b4t_P          185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI  264 (445)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            7777778888888777776431    11121  123455566666677777777766665431 1111222222    22


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Q 010830          438 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE  479 (499)
Q Consensus       438 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  479 (499)
                      +.+..-.+..+.-..++.........++...+..++++|...
T Consensus       265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~  306 (445)
T 4b4t_P          265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN  306 (445)
T ss_dssp             HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence            223333444444444444444444445666777777777664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.14  E-value=19  Score=37.21  Aligned_cols=299  Identities=9%  Similarity=0.005  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHhcCChhHH-HHHH-HHHHhCCCCcCHHHHHHH-HHHHHccCCchHHHHHHHHHHhcc---CCCCHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEA-VMSF-DVMSMHGVEQDVVAVNSL-LSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAI  222 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A-~~~~-~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~  222 (499)
                      +-.++..++...|-..+. +... +.+-+.  . +-.-+.+. --+.... |+.++++.+++....+   ..+....-..
T Consensus       341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~-g~~~~gl~~L~~yL~~~~s~~~~ik~GAl  416 (963)
T 4ady_A          341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHK-GNLLEGKKVMAPYLPGSRASSRFIKGGSL  416 (963)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTS-SCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhcc-CchHHHHHHHHHhccccCCCcHHHHHHHH
Confidence            445677788888854333 2222 223221  1 22222222 2244556 8888888887765431   1222334444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhHccCC---C--CchHHhHHHHHHHHhcCCC-HHHHHHHHHHHhhCCCCCCHhhHH--H
Q 010830          223 LLEGWEKEGNVEEANKTFGEMVERFEW---N--PEHVLAYETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFS--N  294 (499)
Q Consensus       223 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--p~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~  294 (499)
                      +.-+...+|..+++..++.........   .  .+....-.++.-+++-.|. -+++.+.+..+....- .......  .
T Consensus       417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalA  495 (963)
T 4ady_A          417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALG  495 (963)
T ss_dssp             HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence            555566677766777777765543110   0  0022233444444444443 3455666666554321 1111122  2


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHH---HHHHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYN---MIFECL  371 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~  371 (499)
                      +-..+.-.|+.+....++..+.+..   ..+..-...+.-++...|+.+.+..+.+.+... ..|. .-|.   ++.-+|
T Consensus       496 LGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAy  570 (963)
T 4ady_A          496 MGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESL-LRYGGAFTIALAY  570 (963)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHT
T ss_pred             HhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHh
Confidence            3333456688888888888777542   223333334444555789999999999988874 1222 2233   334467


Q ss_pred             HhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCCh-HHH
Q 010830          372 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL-SDV  450 (499)
Q Consensus       372 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a  450 (499)
                      +..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .++
T Consensus       571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a  648 (963)
T 4ady_A          571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA  648 (963)
T ss_dssp             TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred             cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence            77889877777999888742 2233333344445556777788888887766644 56766666666666666664 578


Q ss_pred             HHHHHHHHH
Q 010830          451 RRFAEEMLN  459 (499)
Q Consensus       451 ~~~~~~m~~  459 (499)
                      ..++..+..
T Consensus       649 id~L~~L~~  657 (963)
T 4ady_A          649 IDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcc
Confidence            888888874

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.94  E-value=14  Score=39.68  Aligned_cols=184  Identities=9%  Similarity=0.062  Sum_probs=96.2

Q ss_pred             cCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-----------------------CCCHH
Q 010830           92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------------------VLSLP  148 (499)
Q Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------------------~~~~~  148 (499)
                      .+..+.+.++..|..    .++..--.+..++...|++++|.+.|.+....-                       ..-..
T Consensus       825 ~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  900 (1139)
T 4fhn_B          825 FKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSC  900 (1139)
T ss_dssp             HSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHH
T ss_pred             hhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHH
Confidence            344555666555542    233333445566666777777777775432100                       00123


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL  224 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll  224 (499)
                      -|..++..+-+.+.++.+.+.-....+..-.-+    ...|..+.+.+... |++++|...+-.+... ..-......++
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL~~~pd~-~~r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVALMVLSTT-PLKKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHHHHHHHS-SSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence            466677777777777777766655543321111    12466667777777 7777777766555431 12234444455


Q ss_pred             HHHHhc------------CCHHHHHHHHHHHhHcc-CCCCchHHhHHHHHHHHhcCCCHHHHHH-HHHHHhh
Q 010830          225 EGWEKE------------GNVEEANKTFGEMVERF-EWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKG  282 (499)
Q Consensus       225 ~~~~~~------------g~~~~a~~~~~~~~~~~-~~~p~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~  282 (499)
                      ...++.            |..++..+++..-.+.. .... .+.-|..|-.-+...|++.+|-. +|+...+
T Consensus       979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~-~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVES-QPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC-STHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcccc-CCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            544444            44456666665443321 1111 22356666666777777665544 4555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.84  E-value=10  Score=33.73  Aligned_cols=112  Identities=14%  Similarity=0.133  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCcCHHHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF----DVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~  190 (499)
                      +|-++..-|.+.+++++|++++..-              ...+.+.|+...|-++-    +.+.+.++++|......++.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~  102 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG  102 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            3445667788889999998886332              23345556665555444    55566677888877777777


Q ss_pred             HHHccCCchHHHHHHHHHHhc-----c--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010830          191 AICRQENQTSRALEFLNRVKK-----I--VDPDGDSFAILLEGWEKEGNVEEANKTF  240 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~  240 (499)
                      .+......-..-..+.+.+.+     +  ..-|......+...|.+.+++.+|+..|
T Consensus       103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            776652111112222322211     2  3346677777778888888887777766

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.18  E-value=1.9  Score=39.92  Aligned_cols=68  Identities=12%  Similarity=0.069  Sum_probs=47.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCCCCHhh
Q 010830          221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKF  291 (499)
Q Consensus       221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~  291 (499)
                      ..++..+...|+.+++...+..+...   .|-+...|..+|.++.+.|+..+|++.|++..+     .|+.|+..+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34566667777888877777777544   555666777788888888888888877776543     477776544

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=88.30  E-value=9.9  Score=34.32  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC--HHHHHHHHHHHhhCCCCCCHhhH
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ--VDEALKFLRVMKGENCFPTLKFF  292 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~  292 (499)
                      ....++.-|...|+.++|...++++... ...+   .....+|......++  .+.+-.++..+.. ++-+.....
T Consensus        56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p-~~~~---~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~  126 (358)
T 3eiq_C           56 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EMKS---GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVE  126 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTTCC-GGGG---GHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhCCc-hhHH---HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence            4566788888888888888888887432 2222   223334443333332  3344455555553 444333333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.97  E-value=14  Score=37.15  Aligned_cols=129  Identities=9%  Similarity=0.005  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhCCC-hHHHHHHHHHHHhCCCCCHHHHH-HHHHHHHhcC-ChhHHHHHHHHHHhC------CCCc-CHH-
Q 010830          115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCGAG-KYDEAVMSFDVMSMH------GVEQ-DVV-  183 (499)
Q Consensus       115 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~-~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p-~~~-  183 (499)
                      .-..+++.+...|+ ++.|+++|+++...++.....+. .++..+...+ +--+|.+++.+..+.      ...+ +.. 
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            44555666666666 58899999999888754333333 3333333332 222344444443211      1111 111 


Q ss_pred             ---------HHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010830          184 ---------AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV  244 (499)
Q Consensus       184 ---------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  244 (499)
                               ..+.-..-|... |+++.|+++-++...-.+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                     111122334555 999999999999887777789999999999999999999999999884

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.95  E-value=5.8  Score=33.92  Aligned_cols=118  Identities=10%  Similarity=0.022  Sum_probs=75.8

Q ss_pred             HHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCch
Q 010830          120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT  199 (499)
Q Consensus       120 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  199 (499)
                      +..+.+.|++++|+.....-.+..+.|...-..+++.+|-.|++++|.+-++...+.  .|+...-..+.+.+.+     
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~-----   76 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK-----   76 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-----
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH-----
Confidence            345678899999999999999999999999999999999999999999998888665  4443332222222221     


Q ss_pred             HHHHHHHHHHhc-----c-CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhHc
Q 010830          200 SRALEFLNRVKK-----I-VDPDGDSFAILLEGW--EKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       200 ~~a~~~~~~~~~-----~-~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~  246 (499)
                        |+..-..+-.     + +.....-...++.+.  ...|+.++|.++-.+..+.
T Consensus        77 --aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           77 --AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             --HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence              1122222211     1 111222233344443  3468888888887777553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.78  E-value=5.8  Score=29.69  Aligned_cols=62  Identities=26%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHH
Q 010830          270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIG  334 (499)
Q Consensus       270 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~  334 (499)
                      .=+..+-++.+....+.|+..+....+++|.+.+++..|..+++-++.+.   .+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~---~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CCchhhHHHHHH
Confidence            33455566666777788888888888888888888888888888777552   334445655543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.41  E-value=2.5  Score=31.63  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhcc
Q 010830          166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI  212 (499)
Q Consensus       166 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~  212 (499)
                      ..+-++.+....+.|+.....+.+++|-+. +|+..|..+|+.++..
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRv-NDfalAVR~lE~vK~K  117 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDK  117 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence            334444444444455555555555555555 5555555555555443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=87.19  E-value=0.0017  Score=60.25  Aligned_cols=114  Identities=12%  Similarity=0.237  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 010830          114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC  193 (499)
Q Consensus       114 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  193 (499)
                      ..|..|.++....+++.+|++-|-+  .   .|+..|..+|.+..+.|.+++-.+.+...++..  .+...=+.|+-+|+
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIk--A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA  127 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIK--A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA  127 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCC--C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHh--C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence            4555666666666665555544311  1   133335566666666666666665555444332  22223335555565


Q ss_pred             ccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                      +. ++..+.++++.      .||..-...+.+-|...|.++.|.-+|.
T Consensus       128 k~-~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys  168 (624)
T 3lvg_A          128 KT-NRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN  168 (624)
T ss_dssp             TS-CSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred             hh-CcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence            55 44433222211      2333333444444444444444444443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.33  E-value=22  Score=32.57  Aligned_cols=235  Identities=7%  Similarity=-0.051  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc--hHHhHHHHHHHHhcC-CCHHHHHHHHHHHhhCCCCCCHhhH---
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF---  292 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~---  292 (499)
                      ....|...|.+.|+.++..+++.....-++.-+.  .......+++.+... +..+.-.++..+..+... -+..+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3445666677777777766666665443222221  122344555555554 233333333333322110 011122   


Q ss_pred             ---HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC---CHhHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHhH
Q 010830          293 ---SNALDILVKLNDSTHAVQLWDIMVGIGFNLMP---NLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTY  364 (499)
Q Consensus       293 ---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~  364 (499)
                         .-++..|...|++.+|.+++..+.+.-.....   -..+|-.-++.|...+++.++...+......  .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               24677788888888888888777764200111   1345666677788888888888888776542  222333222


Q ss_pred             HHH----HHHHH-hcCCHhHHHHHHHHHHHC----CCC--CChhhHHHHHHHHhccCChhHHHHHHH-HHHHCCCCChHH
Q 010830          365 NMI----FECLI-KNKRVHEVEKFFHEMIKN----EWQ--PTPLNCATAITMLLDADEPEIAIEIWN-YILENGILPLEA  432 (499)
Q Consensus       365 ~~l----l~~~~-~~g~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~  432 (499)
                      ..+    ...+. ..+++..|...|-+..+.    +..  .+...|..|....  .++..+...++. .....-..|...
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~  257 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDID  257 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHH
Confidence            111    11234 678888887777665432    110  0111232222222  233333333222 111111346666


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHH
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEM  457 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m  457 (499)
                      .+..++.+| +.+++.+...+++..
T Consensus       258 ~l~~L~~a~-~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          258 AMKSVAEAS-HKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            666666665 456776666666554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.79  E-value=24  Score=32.41  Aligned_cols=234  Identities=12%  Similarity=0.026  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc---CHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHH-----
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQ---DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF-----  220 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----  220 (499)
                      ...|...|.+.|+.++..+++...... +.-+   .......++..+....+..+.-.++.....+.-.....+|     
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l  101 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL  101 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666666666665554321 1111   1223445555555543444333333332211000111122     


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHhHccCCCCch----HHhHHHHHHHHhcCCCHHHHHHHHHHHhhC--CCCCCHhhHH
Q 010830          221 -AILLEGWEKEGNVEEANKTFGEMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFS  293 (499)
Q Consensus       221 -~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~  293 (499)
                       .-++..|...|++.+|.+++.++.+...- .++    ...|-.-+..|...+++.++...+......  .+.++..+-.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence             24778888888888888888887764221 111    234566677788888888888888766532  2223332221


Q ss_pred             HH----HHHHH-HcCCHhHHHHHHHHHHhcCCCC-CC---CHhHHHHHHHHHHcCCChHHHHHHHH-HHHHCCCCCCHHh
Q 010830          294 NA----LDILV-KLNDSTHAVQLWDIMVGIGFNL-MP---NLIMYNAVIGLLCNNDDVDNVFRFFD-QMVFHGAFPDSLT  363 (499)
Q Consensus       294 ~l----i~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~  363 (499)
                      .+    ...+. ..+++..|...|-+..+.-... .|   +...|..+.....  ++..+...++. .....-..|+...
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~~~pei~~  258 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITYSGRDIDA  258 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhccccccccCCccHHH
Confidence            11    12234 5788888887776654221000 11   1223433333222  22222222221 1111112355555


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHH
Q 010830          364 YNMIFECLIKNKRVHEVEKFFHEM  387 (499)
Q Consensus       364 ~~~ll~~~~~~g~~~~a~~~~~~~  387 (499)
                      +..++.+| ..+++.+...+++..
T Consensus       259 l~~L~~a~-~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          259 MKSVAEAS-HKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred             HHHHHHHH-HhCCHHHHHHHHHHH
Confidence            56666654 556777666666654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.04  E-value=12  Score=34.88  Aligned_cols=100  Identities=11%  Similarity=-0.024  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCC-chHHhHHHHHHHHhcCCCHHHHHHHHHHHhh---CCCCCCHhhH-
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFF-  292 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~-  292 (499)
                      .++..+...|.+.|+++.|.+.|.++... ...+ .-...+-..++.+...+++..+...+.+...   .+-.++...- 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            46677888899999999999999998774 2222 1345677788888889999999888887653   3322322110 


Q ss_pred             -HHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          293 -SNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       293 -~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                       ..-...+...+++..|.+.|-+....
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             01111223567888888887776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=83.76  E-value=6  Score=30.98  Aligned_cols=56  Identities=5%  Similarity=0.036  Sum_probs=31.1

Q ss_pred             HHHHHccCCchHHHHHHHHHHhc--cCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          189 LSAICRQENQTSRALEFLNRVKK--IVDPD-------GDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      +..+... +.++.|+-+.+.+..  +..++       ..++..+.+++...|++..|...|++..+
T Consensus        27 ik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           27 VRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3444445 566666655555432  11222       12445566677777777777777777533

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.71  E-value=12  Score=35.08  Aligned_cols=98  Identities=9%  Similarity=-0.141  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCChhh--H
Q 010830          327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLN--C  399 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~--~  399 (499)
                      .++..+...|.+.|++++|.+.|.++...  +..--...+-.+++.+...+++..+...+.++...   +-.++...  .
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            36677888888888888888888888764  22233456777778888888888888888777542   22222111  0


Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHH
Q 010830          400 ATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       400 ~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      ..-...+...+++..|.+.|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence            1111123355777777776666543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=82.22  E-value=0.011  Score=54.90  Aligned_cols=216  Identities=9%  Similarity=0.104  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      |+..|..+|.+..+.|++++-++.+...++. ..+...=+.|+-+|++.++..+-.+.+.       .||..-...+-+-
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr  153 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR  153 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence            4445666677777777777666666544433 3233334566677777776655443331       3555455555555


Q ss_pred             HHccCCchHHHHHHHHHHhc---------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          192 ICRQENQTSRALEFLNRVKK---------------------IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      |... |.++.|.-+|..+..                     .-..+..||..+-.+|...+.+.-|.-.--.+.-    .
T Consensus       154 cf~e-~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----h  228 (624)
T 3lvg_A          154 CYDE-KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----H  228 (624)
T ss_dssp             HHHS-CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----C
T ss_pred             HHHc-cCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----c
Confidence            6666 666666666655422                     1135678899999999999888877554444432    1


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC------
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP------  324 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------  324 (499)
                      |+   -...++..|-..|.+++.+.+++.-.... ......|+.|.-.|+|- ++++..+.++..-.+ .+++.      
T Consensus       229 ad---eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr-iNipKviracE  302 (624)
T 3lvg_A          229 AD---ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR-VNIPKVLRAAE  302 (624)
T ss_dssp             SS---CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS-SCCTTTHHHHT
T ss_pred             HH---HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            21   23446777888888888888888765321 24567777777777665 333333332221111 00111      


Q ss_pred             CHhHHHHHHHHHHcCCChHHHH
Q 010830          325 NLIMYNAVIGLLCNNDDVDNVF  346 (499)
Q Consensus       325 ~~~~~~~li~~~~~~~~~~~a~  346 (499)
                      ....|.-++-.|++-.+++.|.
T Consensus       303 ~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          303 QAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             TTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhHHHHHHHHhcchhHHHHH
Confidence            4567788888888777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	499
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	4e-05
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	4e-05
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 7/182 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
           A+  F  A         A+  + +VL +   F++   A                ++   Y
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 158 CGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
              G  D A+ ++   + +             L+   +++   + A +  N   ++    
Sbjct: 248 YEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            DS   L     ++GN+EEA + + + +E     PE   A+      L +  ++ EAL  
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 277 LR 278
            +
Sbjct: 362 YK 363

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 8/203 (3%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
              AW+ +  V    G      +            L  + ++ +    A  +D AV ++ 
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                     VV  N  L+ +  ++     A++   R  ++     D++  L    +++G
Sbjct: 228 RALSLSPNHAVVHGN--LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +V EA   +   +      P H  +             ++EA++  R  K    FP    
Sbjct: 286 SVAEAEDCYNTAL---RLCPTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAA 340

Query: 292 FSNAL-DILVKLNDSTHAVQLWD 313
             + L  +L +      A+  + 
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYK 363

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 5/160 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
           AV  +  A             +  V  + G  +   +  R   E        + ++ ++ 
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
              G   EA   ++              N  L+ I R++     A+    +  ++     
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNN--LANIKREQGNIEEAVRLYRKALEVFPEFA 339

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            + + L    +++G ++EA   + E +     +P    AY
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAY 376

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA-VQLWDIMVGIGFNL 322
           LIRGK ++EA   LR       +   K   +A    V  +D+    + +    V  G  +
Sbjct: 23  LIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAV 82

Query: 323 MP 324
           +P
Sbjct: 83  LP 84

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           LIRGK+V +AL  L     +      K   +A+      + 
Sbjct: 19  LIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDG 59

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +IRGK V +A   LR +      P  K  ++A    +  +
Sbjct: 37  VIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHND 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	499
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.21
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.2
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.99
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.4
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.35
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.32
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.31
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.1
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.61
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.55
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.77
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.75
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.76
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.58
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.76
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	83.75
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.31

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-21  Score=180.15  Aligned_cols=377  Identities=11%  Similarity=0.056  Sum_probs=314.6

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|++++|.+.|+.+.+..+-+..++..+..+|.+.|++++|++.|++..+.++.+..+|..+...|.+.|++++|.+.+
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~   90 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence            46899999999998877777789999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      ....+.. ..+.............. +....+............................+....+...+......   .
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  165 (388)
T d1w3ba_          91 RHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---Q  165 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---C
T ss_pred             ccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc---C
Confidence            9998764 33444444444444445 66666666666655555566667777777888889999999988888654   6


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      |++...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+   +.+...+.
T Consensus       166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~  241 (388)
T d1w3ba_         166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS---PNHAVVHG  241 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC---TTCHHHHH
T ss_pred             cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh---hhHHHHHH
Confidence            7778889999999999999999999999887754 2346678888999999999999999999998875   55788888


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccC
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD  410 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  410 (499)
                      .+...+.+.|++++|...|++..+.. +-+...|..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence            99999999999999999999998852 2246788889999999999999999999988754 457778888999999999


Q ss_pred             ChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHhccc
Q 010830          411 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI-YEVTMHKLKKAFYNESR  481 (499)
Q Consensus       411 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~  481 (499)
                      ++++|.+.+++..+.. +-+..++..+..+|.+.|++++|...|++.++.  .| +...+..+...|.+.|+
T Consensus       320 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            9999999999988743 234677888899999999999999999999865  35 46678888888887764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.6e-19  Score=165.58  Aligned_cols=361  Identities=12%  Similarity=0.033  Sum_probs=301.6

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      +...+-+.|++++|++.|+++.+..+.+..++..+...|.+.|++++|.+.|+...+.. +-+..++..+...+... |+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~-g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-GQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhh-cc
Confidence            34567788999999999999999888889999999999999999999999999998763 34567888888999999 99


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR  278 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~  278 (499)
                      +++|...+....+..+.+..............+....+..........   .+................+....+...+.
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccchhhhhHHHHH
Confidence            999999999998877777777777777777778877777777766554   22244466677778888899999998888


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 010830          279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF  358 (499)
Q Consensus       279 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  358 (499)
                      ...... +-+...+..+...+...|+.+.|...++...+..   +-+...|..+...+...|++++|...+++....+. 
T Consensus       160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-  234 (388)
T d1w3ba_         160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-  234 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred             HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-
Confidence            776644 2346677788889999999999999999998864   45678899999999999999999999999887533 


Q ss_pred             CCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHH
Q 010830          359 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL  438 (499)
Q Consensus       359 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  438 (499)
                      .+...+..+...+.+.|++++|...|+++++.. +-+..++..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  312 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA  312 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence            356778888899999999999999999998864 2356788889999999999999999999988754 55677888889


Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Q 010830          439 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER  492 (499)
Q Consensus       439 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--a~~~~~~~~~  492 (499)
                      ..+.+.|++++|.+.+++.++.. +-+..++..+...|.+.|+.  |.+.|++.++
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999998653 22467788899999999998  9998888765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-12  Score=118.83  Aligned_cols=244  Identities=12%  Similarity=0.021  Sum_probs=129.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 010830          153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN  232 (499)
Q Consensus       153 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~  232 (499)
                      ....+.+.|++++|...|++..+.. +-+..+|..+..++... |++++|...|++..+..+.+...+..+...|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAEN-EQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            3444555555555555555555442 22344444444444444 555555555555444333344455555555555555


Q ss_pred             HHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHH
Q 010830          233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW  312 (499)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  312 (499)
                      +++|.+.+++....   .|.....+........                    ..+.......+..+...+...+|...+
T Consensus       103 ~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         103 QRQACEILRDWLRY---TPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             HHHHHHHHHHHHHT---STTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHh---ccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence            55555555554332   2211111000000000                    000001111122334445566677777


Q ss_pred             HHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010830          313 DIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW  392 (499)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  392 (499)
                      ....+... -..+..++..+...+...|++++|+..|++...... -+...|..+...|...|++++|.+.|++.++.. 
T Consensus       160 ~~al~~~p-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-  236 (323)
T d1fcha_         160 LAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-  236 (323)
T ss_dssp             HHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhh-cccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence            76665431 123456677777777777888888888777766421 245667777777777788888887777777643 


Q ss_pred             CCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 010830          393 QPTPLNCATAITMLLDADEPEIAIEIWNYILE  424 (499)
Q Consensus       393 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  424 (499)
                      +-+...+..+..+|.+.|++++|.+.|++.++
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            12455667777777777777777777777664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.3e-13  Score=120.81  Aligned_cols=238  Identities=11%  Similarity=-0.040  Sum_probs=108.6

Q ss_pred             hcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (499)
                      ..|+.+.|...|+.+.+..+.+..+|..+..++...|++++|...|++..+..+.+...|..+...|...|++++|.+.+
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  110 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL  110 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccch
Confidence            34555555555555444444445555555555555555555555555555444444445555555555555555555555


Q ss_pred             HHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCC
Q 010830          171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN  250 (499)
Q Consensus       171 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  250 (499)
                      +.....  .|+.............                   ..+.......+..+...+.+++|.+.|.+..+. .-.
T Consensus       111 ~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~  168 (323)
T d1fcha_         111 RDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL-DPT  168 (323)
T ss_dssp             HHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH-STT
T ss_pred             hhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH-hhc
Confidence            544432  1111000000000000                   000000011111223334455555555555432 111


Q ss_pred             CchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHH
Q 010830          251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYN  330 (499)
Q Consensus       251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  330 (499)
                      ..+...+..+...+...|++++|+..|++..... +-+...+..+..+|.+.|++++|.+.+++.++..   +-+..+|.
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~  244 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ---PGYIRSRY  244 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh---hccHHHHH
Confidence            1133445555555666666666666665554432 1134445555555556666666666666555532   22445555


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHH
Q 010830          331 AVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       331 ~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      .+..+|.+.|++++|++.|++..+
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            555566666666666666655544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-09  Score=97.59  Aligned_cols=132  Identities=8%  Similarity=-0.041  Sum_probs=58.8

Q ss_pred             CCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010830           93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD  171 (499)
Q Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  171 (499)
                      +..++|++.++.+.+..+-+..+|+....++...| ++++|++.++...+.++-+..+|..+...+.+.|++++|++.++
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~  136 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA  136 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence            34444555554444444444444444444444433 24445555444444444444444444444444444444444444


Q ss_pred             HHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 010830          172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG  226 (499)
Q Consensus       172 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~  226 (499)
                      .+.+.. +-+...|..+...+... |++++|+..++++.+..+.+...|+.+...
T Consensus       137 kal~~d-p~n~~a~~~~~~~~~~~-~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         137 DILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhh-hcchHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            444331 22333444444444444 444444444444433333334444433333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.4e-08  Score=90.40  Aligned_cols=264  Identities=11%  Similarity=-0.026  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh----CCCCCC---
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCFPT---  288 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~---  288 (499)
                      .+..+...|...|++++|...|++..+.   .+..+.....+..+...+...|++..+...+.+...    .+....   
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  132 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  132 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence            3444555556666666666666555432   111111223444555566666666666666655432    111111   


Q ss_pred             HhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC--CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCC--
Q 010830          289 LKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN--LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFH----GAFPD--  360 (499)
Q Consensus       289 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--  360 (499)
                      ...+..+...+...|+++.+...+.........  .......+..+...+...++...+...+.+....    +..+.  
T Consensus       133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~  212 (366)
T d1hz4a_         133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI  212 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence            123344555666677777777776666543210  1122344455555666667777777666655431    11111  


Q ss_pred             HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhccCChhHHHHHHHHHHH----CCCCCh-HH
Q 010830          361 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNYILE----NGILPL-EA  432 (499)
Q Consensus       361 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~  432 (499)
                      ...+..+...+...|+.++|...++...+.....+   ...+..+..++...|++++|...++....    .+..|+ ..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            12344455566677777777777776655422211   22344566677777888888777776652    233333 23


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHc----CCc----cCHHHHHHHHHHHHhcccc
Q 010830          433 SANELLVGLRNLGRLSDVRRFAEEMLNR----RIL----IYEVTMHKLKKAFYNESRS  482 (499)
Q Consensus       433 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~----p~~~~~~~ll~~~~~~g~~  482 (499)
                      .+..+...|.+.|++++|.+.+++..+.    |..    -....+..++..+...++.
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  350 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL  350 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4555667777788888888887776542    221    1223445556666666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=4e-09  Score=93.90  Aligned_cols=216  Identities=7%  Similarity=-0.032  Sum_probs=136.6

Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHhC--------------CChHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCC
Q 010830           98 AVDFFRWAGRGQRLSPYAWNLMVDVLGKN--------------GRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK  162 (499)
Q Consensus        98 a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~  162 (499)
                      +..+|+.+....+.+...|...+..+-+.              +..++|..+|++..+.. +.+...|...+..+.+.|+
T Consensus        35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~  114 (308)
T d2onda1          35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence            44455555554555666666655544322              23467777777777653 3455667777777777888


Q ss_pred             hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 010830          163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG-WEKEGNVEEANKTFG  241 (499)
Q Consensus       163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~  241 (499)
                      ++.|..+|+.+.+.........|...+..+.+. |+.+.|.++|+...+..+.+...|...... +...|+.+.|.++|+
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~-~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e  193 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE  193 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            888888888777653222344677777777777 777777777777766555555555444433 334567777777777


Q ss_pred             HHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC-CCCC--HhhHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPT--LKFFSNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       242 ~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .+.+.   .|++...|...+..+.+.|+++.|..+|++..... ..|+  ...|...+..-...|+.+.+.++++++.+
T Consensus       194 ~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         194 LGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77654   45566677777777777777777777777765532 2332  23556666665666777777776666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.9e-09  Score=94.06  Aligned_cols=147  Identities=7%  Similarity=0.016  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSA  191 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  191 (499)
                      ..+|+.+...+.+.+.+++|+++++.+.+.++.+..+|+....++...| ++++|++.++...+.. +-+..+|+.+-..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            4566666666677777777777777777777666667776666666655 3666666666665442 2344555555555


Q ss_pred             HHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHH
Q 010830          192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL  264 (499)
Q Consensus       192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~  264 (499)
                      +.+. |++++|+..++++.+..+.+...|..+...+.+.|++++|.+.|+++.+.   .|.+...|+.+...+
T Consensus       122 ~~~l-~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         122 VEWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred             HHhh-ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHH
Confidence            5555 55666666665555544555555555555555556666666555555432   444454555444333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=2e-08  Score=90.93  Aligned_cols=278  Identities=12%  Similarity=-0.057  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHH
Q 010830          115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQDVVAVNSL  188 (499)
Q Consensus       115 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l  188 (499)
                      ........+...|++++|++++++..+..+.+     ..++..+...|...|++++|.+.|+...+... .++..     
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----   88 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH-----   88 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH-----
Confidence            33444455666777777777777766654322     23455566666777777777777766543210 01100     


Q ss_pred             HHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc-----cCCCCchHHhHHHHHHH
Q 010830          189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLIT  263 (499)
Q Consensus       189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~  263 (499)
                                                .....+..+...+...|++..+...+.+....     ....+.....+..+...
T Consensus        89 --------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  142 (366)
T d1hz4a_          89 --------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  142 (366)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHH
Confidence                                      00112223333344444444444444433221     00111111233334444


Q ss_pred             HhcCCCHHHHHHHHHHHhhC----CCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCC----CHhHHHHHHHH
Q 010830          264 LIRGKQVDEALKFLRVMKGE----NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMP----NLIMYNAVIGL  335 (499)
Q Consensus       264 ~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~li~~  335 (499)
                      +...|+++.+...+......    +.......+......+...++...+...+............    ....+..+...
T Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T d1hz4a_         143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY  222 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            55555555555555444331    11111223333444445555555555555443321100000    12234444555


Q ss_pred             HHcCCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHh
Q 010830          336 LCNNDDVDNVFRFFDQMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT-PLNCATAITMLL  407 (499)
Q Consensus       336 ~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~  407 (499)
                      +...|++++|...+++........   ....+..+...+...|++++|...++.++..    +..|+ ..++..+...|.
T Consensus       223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  302 (366)
T d1hz4a_         223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW  302 (366)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence            566666666666666554321111   1223444555666666666666666665432    22222 234555566666


Q ss_pred             ccCChhHHHHHHHHHH
Q 010830          408 DADEPEIAIEIWNYIL  423 (499)
Q Consensus       408 ~~g~~~~a~~~~~~m~  423 (499)
                      ..|++++|.+.+++..
T Consensus       303 ~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         303 QAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            6777777777666654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.6e-09  Score=92.07  Aligned_cols=187  Identities=12%  Similarity=0.101  Sum_probs=125.1

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHH
Q 010830          269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRF  348 (499)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  348 (499)
                      ..++|..+|++..+...+-+...+...+..+.+.|+.+.|..+|+.+++..  ......+|...+..+.+.|+.+.|.++
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            346677777777665444455566667777777788888888888877653  122244677777777777888888888


Q ss_pred             HHHHHHCCCCCCHHhHHHHHH-HHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCC-
Q 010830          349 FDQMVFHGAFPDSLTYNMIFE-CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-  426 (499)
Q Consensus       349 ~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-  426 (499)
                      |+++.+.+.. +...|..... -+...|+.+.|..+|+.+++. .+.+...+...+..+...|+.+.|..+|++..+.. 
T Consensus       157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            8887765322 2233333222 233457778888888888775 23456677777777788888888888888877643 


Q ss_pred             CCCh--HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          427 ILPL--EASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       427 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                      ..|+  ...|...+..-...|+.+.+.++.+++.+
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3332  35677777777777888888888887765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=9.7e-10  Score=99.34  Aligned_cols=247  Identities=8%  Similarity=-0.085  Sum_probs=144.1

Q ss_pred             chhHHHHHHHhcCCCCCCHHHHHHHHHHHHh----------CCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC--C
Q 010830           95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK----------NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--K  162 (499)
Q Consensus        95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~  162 (499)
                      .++|+++++.+....+-+...|+..-..+..          .|++++|+..++...+.++.+...|..+..++...+  +
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            4677777776665555566666544333222          233667777777777777767777777766666655  3


Q ss_pred             hhHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010830          163 YDEAVMSFDVMSMHGVEQDVVAVNSLLS-AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG  241 (499)
Q Consensus       163 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  241 (499)
                      +++|...++...+.. +++...+...+. .+... +..+.|+..++.+....+-+...|+.+...+.+.|++++|...+.
T Consensus       125 ~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~-~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC-CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             HHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc-cccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            677777777776542 334444444443 33334 777777777777666666667777777777777777776655554


Q ss_pred             HHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 010830          242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFN  321 (499)
Q Consensus       242 ~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  321 (499)
                      ...+.   .|.+    ......+...+..+++...+....... .++...+..+...+...|+.++|...+.+..+..  
T Consensus       203 ~~~~~---~~~~----~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--  272 (334)
T d1dcea1         203 LPENV---LLKE----LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--  272 (334)
T ss_dssp             SCHHH---HHHH----HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--
T ss_pred             HhHHh---HHHH----HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--
Confidence            44332   1111    112223344455555555555554433 2233344445555566666666666666666543  


Q ss_pred             CCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          322 LMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       322 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                       +.+..+|..+...|...|+.++|.+.|++..+
T Consensus       273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             23455666666666677777777777776666

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1e-08  Score=88.68  Aligned_cols=93  Identities=12%  Similarity=-0.094  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      |..+...|.+.|++++|++.|++..+.. +-+..+|+.+-.++... |++++|+..|+++.+..+.+..++..+...|..
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHH-HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            3333344444444444444444443321 12233333333333333 444444444444333223333444444444444


Q ss_pred             cCCHHHHHHHHHHHh
Q 010830          230 EGNVEEANKTFGEMV  244 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~  244 (499)
                      .|++++|.+.|+...
T Consensus       118 ~g~~~~A~~~~~~al  132 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFY  132 (259)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            445555544444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.5e-09  Score=96.52  Aligned_cols=233  Identities=8%  Similarity=-0.019  Sum_probs=149.8

Q ss_pred             hcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC--CHHHHHHHHHHHhhCCCCCCHhhHH-HHHHHHHHcCCH
Q 010830          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFS-NALDILVKLNDS  305 (499)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~  305 (499)
                      ..|++++|+..++...+.   .|.+...|..+..++...+  ++++|+..+.++.+.. +.+...+. .....+...+..
T Consensus        85 ~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          85 SAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence            344567777777777554   6667777777766666654  4778888887776653 22344443 334556667888


Q ss_pred             hHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 010830          306 THAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH  385 (499)
Q Consensus       306 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  385 (499)
                      +.|...++.+++..   +-+...|+.+...+.+.|++++|...+....+.  .|+   .......+...+..+++...+.
T Consensus       161 ~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         161 AEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             HHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHH
Confidence            88888888777764   456778888888888888777765555443331  111   1122334455667777777777


Q ss_pred             HHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccC
Q 010830          386 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY  465 (499)
Q Consensus       386 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~  465 (499)
                      ...... +++...+..+...+...|+.++|...+.+..+.. +-+...+..+..+|.+.|++++|.+.+++..+.+  |+
T Consensus       233 ~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~  308 (334)
T d1dcea1         233 RWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PM  308 (334)
T ss_dssp             HHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GG
T ss_pred             HHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cc
Confidence            777654 2344455566666777788888888888776533 2245666777788888899999999998888653  54


Q ss_pred             H-HHHHHHHHHHH
Q 010830          466 E-VTMHKLKKAFY  477 (499)
Q Consensus       466 ~-~~~~~ll~~~~  477 (499)
                      . .-|..|...+.
T Consensus       309 ~~~y~~~L~~~~~  321 (334)
T d1dcea1         309 RAAYLDDLRSKFL  321 (334)
T ss_dssp             GHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh
Confidence            3 34444444333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.1e-08  Score=86.59  Aligned_cols=131  Identities=12%  Similarity=-0.124  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI  192 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  192 (499)
                      ..+|..+...|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|++.|++..+.. +-+..++..+...+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            35677778888889999999999999988888888889999999999999999999999887763 33456677777778


Q ss_pred             HccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 010830          193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE  245 (499)
Q Consensus       193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  245 (499)
                      ... |++++|...|+...+..+.+......+...+.+.+..+.+..+......
T Consensus       116 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         116 YYG-GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHH-hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            777 8999999999887665555565555555555666665555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.8e-06  Score=68.11  Aligned_cols=123  Identities=7%  Similarity=-0.017  Sum_probs=54.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 010830          157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA  236 (499)
Q Consensus       157 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a  236 (499)
                      +...|+++.|++.|+.+.    .|+..+|..+-.++... |++++|++.|++..+..+.+...|..+..+|.+.|++++|
T Consensus        15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~-g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            344444444444444321    33344444444444444 4444444444444443344444444445555555555555


Q ss_pred             HHHHHHHhHcc-----------C--CCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          237 NKTFGEMVERF-----------E--WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       237 ~~~~~~~~~~~-----------~--~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .+.|++.....           +  .......++..+..++.+.|++++|.+.+....+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            54444443210           0  001112233444455555555555555555554433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=5.6e-06  Score=72.22  Aligned_cols=163  Identities=12%  Similarity=-0.077  Sum_probs=74.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHccCCchHHHHHHHHHHhc---c---CCCCHHHHHH
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMH----GVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKK---I---VDPDGDSFAI  222 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~---~~~~~~~~~~  222 (499)
                      ...|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+. |++++|...+++...   .   ......++..
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            44566666666666666655331    1111 123444444555555 555555555554322   0   0011233344


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHhHc---cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCH------hhH
Q 010830          223 LLEGWEK-EGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL------KFF  292 (499)
Q Consensus       223 ll~~~~~-~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~  292 (499)
                      +...|.. .|++++|.+.+++..+-   .+..+....++..+...+.+.|++++|++.|++..........      ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            4444432 46666666666554321   1111111234555566666666666666666655443211110      112


Q ss_pred             HHHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          293 SNALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       293 ~~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      ...+.++...|+.+.|.+.+++..+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            2233344455566666655555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.4e-06  Score=65.99  Aligned_cols=124  Identities=11%  Similarity=-0.026  Sum_probs=76.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCC
Q 010830          261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNND  340 (499)
Q Consensus       261 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  340 (499)
                      ...+...|++++|++.|.++    ..|+..++..+..+|.+.|++++|++.|++.++.+   +.+...|..+..+|.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHHHhhc
Confidence            44455667777777766643    23455666666777777777777777777777654   445667777777777777


Q ss_pred             ChHHHHHHHHHHHHCCCC--------------CC-HHhHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010830          341 DVDNVFRFFDQMVFHGAF--------------PD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE  391 (499)
Q Consensus       341 ~~~~a~~~~~~m~~~g~~--------------p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  391 (499)
                      ++++|++.|++.......              .+ ..++..+..++.+.|++++|.+.+....+..
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            777777777766542100              00 1233445556666777777777776666544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=2.5e-06  Score=74.53  Aligned_cols=201  Identities=9%  Similarity=0.036  Sum_probs=134.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhCC--C----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-cCHHH
Q 010830          116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG--V----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVE-QDVVA  184 (499)
Q Consensus       116 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~  184 (499)
                      |......|...|++++|.+.|.+..+..  .    .-..+|..+..+|.+.|++++|.+.++...+.    |.. ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            4445678899999999999998887643  1    12458899999999999999999999976542    211 11344


Q ss_pred             HHHHHHHHHccCCchHHHHHHHHHHhc-----cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCc----hH
Q 010830          185 VNSLLSAICRQENQTSRALEFLNRVKK-----IVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE----HV  254 (499)
Q Consensus       185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~  254 (499)
                      +..+...|....|+++.|...+++..+     +..+ -..++..+...|.+.|++++|.+.|+++.......+.    -.
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            555555664433999999999988643     1111 2456788999999999999999999998764111110    11


Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CC---HhhHHHHHHHHHHc--CCHhHHHHHHHHHH
Q 010830          255 LAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT---LKFFSNALDILVKL--NDSTHAVQLWDIMV  316 (499)
Q Consensus       255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~~--~~~~~a~~~~~~~~  316 (499)
                      ..+...+..+...|+++.|.+.+++..+.... ++   ......++.++...  +.+++|+..|+.+.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            23445566777889999999999988775421 11   22345556665442  34666666665443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.2e-06  Score=61.08  Aligned_cols=87  Identities=9%  Similarity=-0.067  Sum_probs=39.6

Q ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchH
Q 010830          121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS  200 (499)
Q Consensus       121 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  200 (499)
                      ..+.+.|++++|+..|++..+..+.+...|..+..+|...|++++|+..++...+.+ +.+...|..+..++... |+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~-~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL-NRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc-cCHH
Confidence            344444555555555555555444444455555555555555555555554444332 22333333333333333 4444


Q ss_pred             HHHHHHHHH
Q 010830          201 RALEFLNRV  209 (499)
Q Consensus       201 ~a~~~~~~~  209 (499)
                      +|+..|++.
T Consensus        89 ~A~~~~~~a   97 (117)
T d1elwa_          89 EAKRTYEEG   97 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=5.8e-06  Score=64.77  Aligned_cols=99  Identities=12%  Similarity=-0.031  Sum_probs=58.3

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ  198 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  198 (499)
                      ....|.+.|++++|+..|++..+.++.+...|..+...|...|++++|.+.|+...+.. +-+..+|..+..++... |+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~-g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL-GK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc-CC
Confidence            34455666666666666666666666666666666666666666666666666665542 33345555555555555 66


Q ss_pred             hHHHHHHHHHHhccCCCCHHH
Q 010830          199 TSRALEFLNRVKKIVDPDGDS  219 (499)
Q Consensus       199 ~~~a~~~~~~~~~~~~~~~~~  219 (499)
                      +++|...+++.....+-+...
T Consensus        94 ~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          94 FRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHH
Confidence            666666665554433333333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.8e-06  Score=60.43  Aligned_cols=83  Identities=14%  Similarity=0.107  Sum_probs=41.7

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |++++|+..|++..+..+.+...|..+..+|.+.|++++|+..+....+.   .|++...|..+..++...|++++|+..
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~~~~~A~~~   93 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFLNRFEEAKRT   93 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh---ccchhhHHHHHHHHHHHccCHHHHHHH
Confidence            44444444444444433444445555555555555555555555555332   444455555555555555555555555


Q ss_pred             HHHHhh
Q 010830          277 LRVMKG  282 (499)
Q Consensus       277 ~~~m~~  282 (499)
                      |++..+
T Consensus        94 ~~~a~~   99 (117)
T d1elwa_          94 YEEGLK   99 (117)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.3e-06  Score=64.16  Aligned_cols=90  Identities=13%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 010830          154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV  233 (499)
Q Consensus       154 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~  233 (499)
                      ...|.+.|++++|+..|++..+.. +-+...|..+-.++... |++++|...|++..+..+.+..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhc-cccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            344555666666666666555442 22344444444445544 5555555555555444444455555555555555555


Q ss_pred             HHHHHHHHHHhH
Q 010830          234 EEANKTFGEMVE  245 (499)
Q Consensus       234 ~~a~~~~~~~~~  245 (499)
                      ++|.+.+++...
T Consensus        95 ~eA~~~~~~a~~  106 (159)
T d1a17a_          95 RAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.35  E-value=0.00028  Score=60.07  Aligned_cols=64  Identities=9%  Similarity=-0.098  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 010830          112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKYDEAVMSFDVMSMHG  177 (499)
Q Consensus       112 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  177 (499)
                      |+..+..|...+-+.+++++|++.|++..+.|  +...+..|...|..    ..++..|...++.....+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            45566666666777778888888887777766  44555556666654    456777777777666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.35  E-value=0.00055  Score=58.09  Aligned_cols=226  Identities=11%  Similarity=-0.001  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhc----CCCHHHHHHHHHHHhhCCCCCCHhhH
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFF  292 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~  292 (499)
                      +..+..|...+.+.|++++|++.|++..+. |    +...+..|...|..    ..+...|...+......+   +....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-K----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            445555666666777777777777777653 3    34455556666654    457777777777766655   22233


Q ss_pred             HHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHH----cCCChHHHHHHHHHHHHCCCCCCHHhH
Q 010830          293 SNALDILVK----LNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLC----NNDDVDNVFRFFDQMVFHGAFPDSLTY  364 (499)
Q Consensus       293 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~  364 (499)
                      ..+...+..    ..+.+.|...++...+.|     .......+...+.    .......+...+......   .+...+
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~  145 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGC  145 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhh-----hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchh
Confidence            333333332    356677777777777766     2222222322222    233456666666666553   355566


Q ss_pred             HHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCChHHHHHH
Q 010830          365 NMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANE  436 (499)
Q Consensus       365 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~  436 (499)
                      ..+...+..    ..+...+...++...+.|   +......+...|..    ..++++|..+|+...+.|.   +..+..
T Consensus       146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~  219 (265)
T d1ouva_         146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFN  219 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred             hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHH
Confidence            666666664    345667777777777655   44444445444443    4678888888888888762   345555


Q ss_pred             HHHHHHh----CCChHHHHHHHHHHHHcCCcc
Q 010830          437 LLVGLRN----LGRLSDVRRFAEEMLNRRILI  464 (499)
Q Consensus       437 ll~~~~~----~g~~~~a~~~~~~m~~~~~~p  464 (499)
                      |-..|.+    ..+.++|.++|++..+.|..+
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            5555554    347888888888888777443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.8e-06  Score=70.73  Aligned_cols=98  Identities=12%  Similarity=-0.046  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      |+...+......+.+.|++++|+..|+...+.++.+...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+-.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            5666666777778888888888888888777777777788888888888888888888888776542 224556666666


Q ss_pred             HHHccCCchHHHHHHHHHHh
Q 010830          191 AICRQENQTSRALEFLNRVK  210 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~  210 (499)
                      ++... |++++|+..|++..
T Consensus        81 ~~~~l-~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEM-ESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHC-CCHHHHHHHHHHHH
Confidence            77766 77777777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=4.5e-06  Score=68.30  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 010830          215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN  294 (499)
Q Consensus       215 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  294 (499)
                      |+...+......|.+.|++++|++.|++..+.   .|.+...|+.+..+|.+.|++++|+..|++..+.. +-+...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHH
Confidence            33444444555555555555555555555332   45555555555555555555555555555554432 112444555


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHh
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      +..+|.+.|++++|...|+...+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            55555555555555555555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00092  Score=58.27  Aligned_cols=136  Identities=12%  Similarity=0.065  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 010830          111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS  190 (499)
Q Consensus       111 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  190 (499)
                      +|..--..+.+.|-+.|.++.|..+|..+..        |..++..+.+.+++..|.+++.+.      -+..+|..+..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~   77 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF   77 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence            3444444455556666666666666654431        556666666666666666665433      23445655666


Q ss_pred             HHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCC
Q 010830          191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK  268 (499)
Q Consensus       191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~  268 (499)
                      .+... .....+..+    ......+......++..|-..|.+++...+++...   +..+.+...++.++..|++.+
T Consensus        78 ~l~~~-~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~---~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          78 ACVDG-KEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHT-TCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHhC-cHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH---cCCccchHHHHHHHHHHHHhC
Confidence            55554 433322111    11222344444556666667777777666666653   333445556666666666654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=0.0025  Score=55.44  Aligned_cols=135  Identities=12%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHH
Q 010830          146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE  225 (499)
Q Consensus       146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~  225 (499)
                      +..--..+...|.+.|.++.|..+|..+.         -|..++..+.+. ++++.|.+++.+.     .+..+|..+..
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l-~~~~~avd~~~k~-----~~~~~~k~~~~   77 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHL-GEYQAAVDGARKA-----NSTRTWKEVCF   77 (336)
T ss_dssp             ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTT-TCHHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhh-ccHHHHHHHHHHc-----CCHHHHHHHHH
Confidence            33334455666667777777777776553         234455555555 6666666665543     24456666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcC
Q 010830          226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN  303 (499)
Q Consensus       226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  303 (499)
                      .+.+......+.-     .. ..... +......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus        78 ~l~~~~e~~la~i-----~~-~~~~~-~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          78 ACVDGKEFRLAQM-----CG-LHIVV-HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHTTCHHHHHH-----TT-TTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHhCcHHHHHHH-----HH-HHhhc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            6665555443211     11 01111 2333455666666666666666666655432 1344555666666666643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.08  E-value=2.1e-05  Score=57.11  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=37.6

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHH
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR  201 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~  201 (499)
                      .+.+.|++++|+..|++..+.++.+..+|..+..++.+.|++++|+..|+...+.. +-+..++..+...+... |++++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~-g~~~~  102 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE-HNANA  102 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC-CCHHH
Confidence            34444555555555555444444444444444444555555555554444444331 22233333333344443 44444


Q ss_pred             HHHHHH
Q 010830          202 ALEFLN  207 (499)
Q Consensus       202 a~~~~~  207 (499)
                      |++.++
T Consensus       103 A~~~l~  108 (112)
T d1hxia_         103 ALASLR  108 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.07  E-value=9.4e-06  Score=59.08  Aligned_cols=87  Identities=13%  Similarity=0.005  Sum_probs=80.4

Q ss_pred             HHhhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010830           88 LQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV  167 (499)
Q Consensus        88 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~  167 (499)
                      .....|++.+|...|+.+....+-+..+|..+..++.+.|++++|+..|+...+.++.+..+|..+...|...|++++|+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence            33568999999999999888777789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 010830          168 MSFDVMS  174 (499)
Q Consensus       168 ~~~~~m~  174 (499)
                      +.|++.+
T Consensus       105 ~~l~~~l  111 (112)
T d1hxia_         105 ASLRAWL  111 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2e-05  Score=58.03  Aligned_cols=94  Identities=9%  Similarity=0.044  Sum_probs=58.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCC---HHHHHHHHHHHhhCCCCCC-HhhHHHHHH
Q 010830          222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPT-LKFFSNALD  297 (499)
Q Consensus       222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~  297 (499)
                      .+++.+...+++++|++.|++....   .|++..++..+..++.+.++   +++|+.+|+++...+..|+ ..++..+..
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            4556666677777777777776443   66666677777777766543   3457777776665443232 224555666


Q ss_pred             HHHHcCCHhHHHHHHHHHHhc
Q 010830          298 ILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       298 ~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      +|.+.|++++|++.|+++++.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHh
Confidence            667777777777777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.1e-05  Score=56.98  Aligned_cols=57  Identities=9%  Similarity=0.000  Sum_probs=28.0

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHh
Q 010830          119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSFDVMSM  175 (499)
Q Consensus       119 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~  175 (499)
                      ++..+...+++++|.+.|+.....++.+..++..+..++.+.++   +++|+++|+++..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            44444455555555555555555555555555555555544332   2234555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00023  Score=55.93  Aligned_cols=63  Identities=16%  Similarity=-0.029  Sum_probs=46.2

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 010830          398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR  461 (499)
Q Consensus       398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~  461 (499)
                      +|+.+..+|.+.|++++|...++..++.. +-+...|..+..+|...|++++|...|++..+.+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            45566777777888888888888777644 2366677777777888888888888888877653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.5e-06  Score=79.68  Aligned_cols=120  Identities=13%  Similarity=0.036  Sum_probs=54.2

Q ss_pred             cCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCH
Q 010830          247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNL  326 (499)
Q Consensus       247 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  326 (499)
                      +++.|++...+..+...+.+.|+.++|...+.......  + ...+..+...+...|++++|...|++..+..   +.+.
T Consensus       113 ~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~---P~~~  186 (497)
T d1ya0a1         113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV---PSNG  186 (497)
T ss_dssp             ------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTBS
T ss_pred             HCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCch
Confidence            44555555566666666666666666666555443321  1 2345556666667777777777777777653   3455


Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 010830          327 IMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIK  373 (499)
Q Consensus       327 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  373 (499)
                      ..|+.+...|...|+..+|...|.+..... .|...++..|...+.+
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            677777777777777777777777666542 3455556666555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.00019  Score=56.35  Aligned_cols=63  Identities=10%  Similarity=-0.103  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      +|+.+..+|.+.|++++|+..++...+.   .|+++.+|..+..+|...|++++|+..|++..+..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhc---cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4566677777777777777777777543   66677777777777777777777777777776643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.9e-06  Score=79.34  Aligned_cols=134  Identities=10%  Similarity=-0.074  Sum_probs=67.6

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      +.++.++..+...-+..+++...+..+...+.+.|+.++|...+......   .  ...++..+...+...|++++|+..
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~--~~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I--CQHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHTC-------------------------------CCHHHHH---H--HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHHcccHHHHHHH
Confidence            44444444443333233445566667777777778877777766655432   1  224566677778888888888888


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcC
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNN  339 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  339 (499)
                      |++..+.. +-+...|+.+...+...|+..+|...|.+.+...   +|-..++..|...+.+.
T Consensus       175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~---~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK---FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS---BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHh
Confidence            88777654 2344677778888888888888888888877764   56677777777666543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00017  Score=53.61  Aligned_cols=95  Identities=9%  Similarity=0.044  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCC-CC-----HhhHH
Q 010830          220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT-----LKFFS  293 (499)
Q Consensus       220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-----~~~~~  293 (499)
                      +..+...|.+.|++++|++.|.+..+.   .|++...|..+..+|.+.|++++|++.++++.+..-. +.     ..+|.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            334566677777777777777777553   6666777777777777777777777777776542100 00     12444


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHh
Q 010830          294 NALDILVKLNDSTHAVQLWDIMVG  317 (499)
Q Consensus       294 ~li~~~~~~~~~~~a~~~~~~~~~  317 (499)
                      .+...+...+++++|...|+....
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHh
Confidence            555566666666666666666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.76  E-value=0.00017  Score=56.63  Aligned_cols=66  Identities=17%  Similarity=-0.025  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      +...|..+..+|.+.|++++|+..+++..   .+.|+++.+|..+..++.+.|++++|++.|++..+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al---~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhh---hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34566667777888888888888888874   4467777788888888888888888888888777643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.75  E-value=0.00036  Score=54.68  Aligned_cols=60  Identities=13%  Similarity=-0.068  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      +..+..++.+.|++++|+..++.+++..   +.+...|..+..+|.+.|++++|+..|++..+
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3344445555555555555555555443   33455555555555555555555555555554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.73  E-value=0.00081  Score=51.52  Aligned_cols=64  Identities=14%  Similarity=0.041  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .+|+.+..+|.+.|++++|++.++...+.   .|.++.+|..+..++...|++++|+..|++..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34555666666666666666666666443   56566666666666666666666666666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=0.00026  Score=55.98  Aligned_cols=93  Identities=12%  Similarity=0.101  Sum_probs=53.0

Q ss_pred             hcCCchhHHHHHHHhcCCCCCC----------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCHH
Q 010830           91 SYDSPSSAVDFFRWAGRGQRLS----------------------PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP  148 (499)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~----------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  148 (499)
                      ..|++++|.+.|..+....+-+                      ...+..+...+.+.|++++|+..++.+.+.++.+..
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH
Confidence            3567777777776665422111                      134455555666666666666666666666665666


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCcCHH
Q 010830          149 TFASIFDSYCGAGKYDEAVMSFDVMS-----MHGVEQDVV  183 (499)
Q Consensus       149 ~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~  183 (499)
                      .|..++.+|.+.|+.++|++.|+++.     +.|+.|+..
T Consensus       103 ~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2         103 LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            66666666666666666666666542     235555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.69  E-value=0.0016  Score=50.68  Aligned_cols=96  Identities=9%  Similarity=-0.015  Sum_probs=60.9

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCccCH-HHHHHHHHHH
Q 010830          398 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE-VTMHKLKKAF  476 (499)
Q Consensus       398 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~  476 (499)
                      +|+.+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|...|++.++.+  |+. .....+-...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            45556667778888888888888877754 4466777777788888888888888888887653  333 3333332222


Q ss_pred             Hhcccc---hHHHHHHHHHHHhh
Q 010830          477 YNESRS---MRDIFDSLERRCKT  496 (499)
Q Consensus       477 ~~~g~~---a~~~~~~~~~~~~~  496 (499)
                      .+.+..   ..+++..|.++...
T Consensus       143 ~~~~~~~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFKKFAE  165 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhh
Confidence            222222   55666666665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.67  E-value=0.00083  Score=51.45  Aligned_cols=60  Identities=10%  Similarity=-0.116  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 010830          292 FSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVF  354 (499)
Q Consensus       292 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  354 (499)
                      |..+..+|.+.|++++|+..++..++..   +.+..+|..+..+|...|++++|+..|++..+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444455555555555555544432   23444555555555555555555555554444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00029  Score=52.28  Aligned_cols=92  Identities=12%  Similarity=0.175  Sum_probs=45.4

Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CC-----HHhHHHHH
Q 010830          295 ALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAF-PD-----SLTYNMIF  368 (499)
Q Consensus       295 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-----~~~~~~ll  368 (499)
                      +-..+.+.|++++|+..|++.++.+   +.+...|..+..+|.+.|++++|+..++++.+.... +.     ..+|..+.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            3344555555555555555555543   334555555555555555555555555554431000 00     12344444


Q ss_pred             HHHHhcCCHhHHHHHHHHHHH
Q 010830          369 ECLIKNKRVHEVEKFFHEMIK  389 (499)
Q Consensus       369 ~~~~~~g~~~~a~~~~~~~~~  389 (499)
                      ..+...+++++|+..|+..+.
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            445555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.00064  Score=53.59  Aligned_cols=125  Identities=11%  Similarity=0.032  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 010830          150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK  229 (499)
Q Consensus       150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (499)
                      ...........|++++|.+.|......  .+...     +   ... ...+-+...-..+..   .....+..+...+.+
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~-----l---~~~-~~~~w~~~~r~~l~~---~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPV-----L---DDL-RDFQFVEPFATALVE---DKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST-----T---GGG-TTSTTHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc-----c---ccC-cchHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            334445678888898888888887754  11110     0   000 010111111111111   123566778888889


Q ss_pred             cCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhh-----CCCCCCHhh
Q 010830          230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKF  291 (499)
Q Consensus       230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~  291 (499)
                      .|++++|...++++.+.   .|.+...|..++.+|.+.|+..+|++.|+++.+     .|+.|+..+
T Consensus        80 ~g~~~~Al~~~~~al~~---~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          80 CGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CCCchHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            99999999999988654   787888899999999999999999999888643     578877554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.61  E-value=0.00034  Score=54.76  Aligned_cols=64  Identities=9%  Similarity=-0.058  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 010830          218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN  284 (499)
Q Consensus       218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  284 (499)
                      .+|+.+..+|.+.|++++|+..++...+.   .|.+..+|..+..++...|++++|+..|++..+..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556667777777777777777777543   66677777777777777777777777777776643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.55  E-value=0.00011  Score=56.10  Aligned_cols=106  Identities=14%  Similarity=0.042  Sum_probs=61.6

Q ss_pred             HHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHh
Q 010830          227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST  306 (499)
Q Consensus       227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  306 (499)
                      |-+.+.+++|.+.|+...+.   .|++..++..+..++...+++..+.+-                         .+.++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~   58 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQ   58 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHH
Confidence            34556688888888888554   787888888777777665544333321                         12345


Q ss_pred             HHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCC-----------hHHHHHHHHHHHHCCCCCCHHhHH
Q 010830          307 HAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDD-----------VDNVFRFFDQMVFHGAFPDSLTYN  365 (499)
Q Consensus       307 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----------~~~a~~~~~~m~~~g~~p~~~~~~  365 (499)
                      +|+..|++.++..   +.+..+|..+..+|...|+           +++|.+.|++..+  +.|+...|.
T Consensus        59 ~Ai~~~~kAl~l~---P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~  123 (145)
T d1zu2a1          59 EAITKFEEALLID---PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL  123 (145)
T ss_dssp             HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred             HHHHHHHHHHHhc---chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHH
Confidence            5666666666653   4456666666666654332           3445555555544  334444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.52  E-value=0.00013  Score=61.87  Aligned_cols=119  Identities=14%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             CchHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHHHHHHHhcCCCHHHHHHH
Q 010830          197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF  276 (499)
Q Consensus       197 ~~~~~a~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~  276 (499)
                      |++++|+..+++..+..+.|...+..+...|+..|++++|.+.|+...+.   .|++...+..+...+...+..+++..-
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            77777777777776666667777777777777777777777777777543   565555555555444433333332211


Q ss_pred             HHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 010830          277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGI  318 (499)
Q Consensus       277 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  318 (499)
                      .......+-.++...+......+...|+.++|...++++.+.
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111011111112222333344555566666666666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.50  E-value=0.00022  Score=54.20  Aligned_cols=102  Identities=11%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             HhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHH
Q 010830          124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL  203 (499)
Q Consensus       124 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~  203 (499)
                      -+.+.+++|++.|+...+.++.+..++..+..+|...+++..+.+-                         . +.+++|+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~-~~~~~Ai   61 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA-------------------------K-QMIQEAI   61 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------H-HHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------H-HHHHHHH
Confidence            3445567777777777777776777777776666655444333321                         1 3344555


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhHccCCCCchH
Q 010830          204 EFLNRVKKIVDPDGDSFAILLEGWEKEG-----------NVEEANKTFGEMVERFEWNPEHV  254 (499)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~~~~p~~~  254 (499)
                      ..|++..+..+.+..+|..+..+|...|           .+++|.+.|++..+   +.|++.
T Consensus        62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~  120 (145)
T d1zu2a1          62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNT  120 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCH
T ss_pred             HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHH
Confidence            5555554444455555655555554433           24556666666533   355444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.49  E-value=0.00018  Score=60.82  Aligned_cols=122  Identities=8%  Similarity=-0.027  Sum_probs=81.6

Q ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHH-HHHHHHHHHccCCchH
Q 010830          122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA-VNSLLSAICRQENQTS  200 (499)
Q Consensus       122 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~  200 (499)
                      -..+.|++++|+..+++..+..+.+...+..+...++..|++++|.+.|+...+.  .|+... +..+...+... +..+
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~-~~~~   81 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-QARK   81 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhc-cccH
Confidence            3457799999999999999999999999999999999999999999999998765  454433 33333332222 2222


Q ss_pred             HHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhHc
Q 010830          201 RALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER  246 (499)
Q Consensus       201 ~a~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  246 (499)
                      ++..-...... +.+++...+......+...|+.++|.+.++++.+.
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            22111111000 12233444555566777889999999988888664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.91  E-value=0.016  Score=44.11  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhHccCCCCc---------hHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 010830          224 LEGWEKEGNVEEANKTFGEMVERFEWNPE---------HVLAYETFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       224 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      ...+.+.|++++|++.|++..+-..-.|+         ...+|+.+..+|.+.|++++|++.+++..
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            34455667777777777776543111121         12345556666666666666665555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.77  E-value=0.019  Score=43.62  Aligned_cols=90  Identities=11%  Similarity=0.027  Sum_probs=53.5

Q ss_pred             HHHhcCCHhHHHHHHHHHHHCC-CCCC----------hhhHHHHHHHHhccCChhHHHHHHHHHHHC-----CCCCh---
Q 010830          370 CLIKNKRVHEVEKFFHEMIKNE-WQPT----------PLNCATAITMLLDADEPEIAIEIWNYILEN-----GILPL---  430 (499)
Q Consensus       370 ~~~~~g~~~~a~~~~~~~~~~~-~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~---  430 (499)
                      .+...|++++|+..|++.++.. -.|+          ..+|+.+..+|...|++++|.+.+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            3444566666666666655421 0011          235566666677777777777766665531     11111   


Q ss_pred             --HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010830          431 --EASANELLVGLRNLGRLSDVRRFAEEMLN  459 (499)
Q Consensus       431 --~~~~~~ll~~~~~~g~~~~a~~~~~~m~~  459 (499)
                        ...++.+..+|...|++++|...|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12456667888888999999988888764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.75  E-value=0.047  Score=38.43  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 010830          290 KFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGA  357 (499)
Q Consensus       290 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  357 (499)
                      ..+...++.+...|+-++-.+++..+.+.+   ++++...-.+..+|.+.|...++-+++.+..+.|+
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~---~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334445555566666666666666655543   45555555566666666666666666666655554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.71  E-value=0.05  Score=38.27  Aligned_cols=139  Identities=17%  Similarity=0.051  Sum_probs=72.6

Q ss_pred             HcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHhHH
Q 010830          301 KLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDSLTYNMIFECLIKNKRVHEV  380 (499)
Q Consensus       301 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  380 (499)
                      -.|..++..+++.+..+..     +..-||.+|--....-+-+-..++++..-+.   .|..          ..+++...
T Consensus        14 ldG~ve~Gveii~k~~~ss-----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~v   75 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV   75 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred             HhhhHHhHHHHHHHHcccC-----CccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHH
Confidence            3466666666666666543     4455555555444444444444444444321   1111          12222222


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          381 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       381 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ...+-.+   +  .+...+...++.....|+-+.-.++++.+.+.+ ++++...-.+..+|.+-|...++.+++.+.-++
T Consensus        76 v~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          76 VECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             HHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            2222221   1  133444555566666666676667766655533 555566666667777777777777777777666


Q ss_pred             CCc
Q 010830          461 RIL  463 (499)
Q Consensus       461 ~~~  463 (499)
                      |++
T Consensus       150 G~K  152 (161)
T d1wy6a1         150 GEK  152 (161)
T ss_dssp             TCH
T ss_pred             hHH
Confidence            654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0094  Score=40.87  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhHccCCCCchHHhHHH
Q 010830          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET  259 (499)
Q Consensus       217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~  259 (499)
                      ..+++.+..+|.+.|++++|.+.+++..+.   .|++..+++.
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l---~P~~~~a~~N   85 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLEL---DPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHh---CcCCHHHHHH
Confidence            345566666666666666666666666443   5655544443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.011  Score=40.55  Aligned_cols=64  Identities=6%  Similarity=-0.086  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010830          113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV------L-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH  176 (499)
Q Consensus       113 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  176 (499)
                      ...+-.+...+.+.|++++|+..|++..+...      + ...+++.+..+|.+.|++++|++.+++..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            33444566677777777777777766654321      1 2456777777777777777777777777654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.05  E-value=0.14  Score=37.29  Aligned_cols=16  Identities=6%  Similarity=-0.112  Sum_probs=7.0

Q ss_pred             ChHHHHHHHHHHHHcC
Q 010830          446 RLSDVRRFAEEMLNRR  461 (499)
Q Consensus       446 ~~~~a~~~~~~m~~~~  461 (499)
                      +.++|.+++++..+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            3444444444444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.95  E-value=0.14  Score=37.13  Aligned_cols=16  Identities=13%  Similarity=0.208  Sum_probs=6.5

Q ss_pred             ChhHHHHHHHHHHHCC
Q 010830          411 EPEIAIEIWNYILENG  426 (499)
Q Consensus       411 ~~~~a~~~~~~m~~~~  426 (499)
                      +.++|.++|+...+.|
T Consensus       110 d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         110 NEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            3444444444444333

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=4.5  Score=35.87  Aligned_cols=363  Identities=9%  Similarity=0.058  Sum_probs=197.1

Q ss_pred             cCCchhHHHHHHhcCCCCCHHHHH-HHHH--hhcCCchhHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 010830           62 HASSDDIESALACTGIIPTPDLVH-EVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV  138 (499)
Q Consensus        62 ~~~~~~l~~~l~~~~~~~~~~~~~-~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  138 (499)
                      ..+..++...+...+-.|-...+. ..+.  ...+++...+.+|    ...+.+...-.....+....|+.+.|...+..
T Consensus        52 ~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~  127 (450)
T d1qsaa1          52 NQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE  127 (450)
T ss_dssp             GCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            345567888888877666543332 2222  2234554433333    23455676666777888888999888888887


Q ss_pred             HHhCCCCCHHHHHHHHHHHHhcCChhHH--HHHHHHHHhCC-----------CCcC-HHHHHHHHHHHHccCCchHHHHH
Q 010830          139 MKEDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHG-----------VEQD-VVAVNSLLSAICRQENQTSRALE  204 (499)
Q Consensus       139 m~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g-----------~~p~-~~~~~~ll~~~~~~~~~~~~a~~  204 (499)
                      +-..|......+..+...+...|.+...  .+-+..+...|           +.++ .......+...... ..   +..
T Consensus       128 lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p-~~---~~~  203 (450)
T d1qsaa1         128 LWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP-NT---VLT  203 (450)
T ss_dssp             HHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG-GG---HHH
T ss_pred             HHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh-Hh---HHH
Confidence            7777755555555566555554433221  12222222211           0111 11112222221111 11   111


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhHccCCCCchHHhHH-HHHHHHhcCCCHHHHHHHHHHHh
Q 010830          205 FLNRVKKIVDPDGDSFAILLEGWEK--EGNVEEANKTFGEMVERFEWNPEHVLAYE-TFLITLIRGKQVDEALKFLRVMK  281 (499)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~  281 (499)
                      ...    ....+......+..++.+  ..+.+.+..++..........++...... .+...+...+..+.+..++....
T Consensus       204 ~~~----~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~  279 (450)
T d1qsaa1         204 FAR----TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI  279 (450)
T ss_dssp             HHH----HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred             HHh----cCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc
Confidence            111    122333333333333333  35778888888887765444432222222 22233344566788888877766


Q ss_pred             hCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 010830          282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVIGLLCNNDDVDNVFRFFDQMVFHGAFPDS  361 (499)
Q Consensus       282 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  361 (499)
                      ..+  .+.......+......+++..+...+..+....   .....-.--+..++...|+.+.|...|......   ++ 
T Consensus       280 ~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~---~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~-  350 (450)
T d1qsaa1         280 MRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA---KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-  350 (450)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG---GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS-
T ss_pred             ccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc---ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC-
Confidence            655  344444555666667788888888888765432   223445566778888899999999999888642   32 


Q ss_pred             HhHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-hhh-----HHHHHHHHhccCChhHHHHHHHHHHHCCCCChHHHHH
Q 010830          362 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-PLN-----CATAITMLLDADEPEIAIEIWNYILENGILPLEASAN  435 (499)
Q Consensus       362 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  435 (499)
                        |-..+.+ .+.|..-.       +-......+ ...     -..-+..+...|....|...|..+.+. .  +.....
T Consensus       351 --fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~  417 (450)
T d1qsaa1         351 --FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQA  417 (450)
T ss_dssp             --HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHH
T ss_pred             --hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHH
Confidence              3333322 12222100       000000000 000     112355667889999999999988753 3  344556


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHH
Q 010830          436 ELLVGLRNLGRLSDVRRFAEEML  458 (499)
Q Consensus       436 ~ll~~~~~~g~~~~a~~~~~~m~  458 (499)
                      .+.....+.|.++.|+.......
T Consensus       418 ~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         418 QLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCChhHHHHHHHHHH
Confidence            67777889999999998877664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.76  E-value=1.1  Score=31.49  Aligned_cols=73  Identities=11%  Similarity=-0.076  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH
Q 010830          109 QRLSPYAWNLMVDVLGKNG---RFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV  183 (499)
Q Consensus       109 ~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  183 (499)
                      ..+++.+--...-+++++.   +.++++.+|+++.+.++.+ ...+-.|.-+|.+.|++++|.+.++.+.+.  .|+..
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~  107 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK  107 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence            3455555555666666654   4567888888888766544 356677788888899999999999888765  55543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.58  E-value=0.62  Score=30.87  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Q 010830          165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK  211 (499)
Q Consensus       165 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~  211 (499)
                      ++.+-++.+....+.|++....+.+++|-+. +++..|.++|+.++.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRv-ND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            3444444454455555555555555555555 555555555555554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.76  E-value=2.2  Score=28.21  Aligned_cols=62  Identities=26%  Similarity=0.307  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCCCHhHHHHHH
Q 010830          269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMVGIGFNLMPNLIMYNAVI  333 (499)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~li  333 (499)
                      +.=++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++.++.+.   .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~---~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcHHHHHHHH
Confidence            344556666667777777888888888888888888888888887777542   23344555443

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.75  E-value=5.5  Score=28.04  Aligned_cols=66  Identities=11%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHhccCCh--hHHHHHHHHHHHCCCCCh
Q 010830          364 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP--EIAIEIWNYILENGILPL  430 (499)
Q Consensus       364 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~  430 (499)
                      ...++.-|...|+.++|...++++...... ....+..+..+.-+.+.-  +.+..++..+.+.|+-..
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~   77 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI   77 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCH
Confidence            566777788888888888888777321111 122333344444343333  234567777776665433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.31  E-value=6.1  Score=27.50  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             CChhhHHHHHHHHhcc---CChhHHHHHHHHHHHCCCCCh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 010830          394 PTPLNCATAITMLLDA---DEPEIAIEIWNYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNR  460 (499)
Q Consensus       394 p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~  460 (499)
                      ++..|--....++.+.   .+.++++.+++++.+.+ ..+ ...+..|..+|.+.|++++|.+.++.+++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4444433444445544   34567777777777643 222 234455666777888888888888888754