Citrus Sinensis ID: 010850

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccEEccc
ccccccccccccccHHHHcccccHcHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEcEEEcccccEccEEEEccEEEEEEEcccccEEEEEEEEcccccccccEEEcccccccccccccHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHEcccccEEEEEcccccccccccccccEEEEEEcccccccccccccHHcHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccEEEEEEcccccccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccHcccccEEEEEccccccEEEEc
marheelpvptfwSLKAvygeglqlEEAERRFDNLNSKFIqvfaqppdvyarcpgrvnligehidyegysvlpmAIRQDTIVAIRKHDSKEAEKVLKIANVsdkynmctypaepdqeidmkhhqwghyfiCGYKAFYEYVKAkgldvgppvgldilvdgtvptgsglssstafVCSSTVALMAAFGVEVPKKEIAQLTCECEQfigtqsggmDQAISIMAKSGfaelidfnpirttdvqlpaggTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAckngssdpvFAVKEFlrkepytaldiEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseeDKLKKLGdlmndshhscsvlyecscpelEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSridrgvinnndlGLYVFaskpssgaakfkf
marheelpvptfwslKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLkianvsdkynMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAasnynnrvVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFackngssdpVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHafkdtvssnlseEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLyvfaskpssgaakfkf
MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
********VPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKIT*****************************AAHVYS*******************************SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFA************
*****EL*VPTFWSLKAVYGEGLQ**E**RRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
********VPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP*********
*******PVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
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MARHEELPVPTFWSLKAVYGEGLQxxxxxxxxxxxxxxxxxxxxxPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query499 2.2.26 [Sep-21-2011]
Q9SEE5496 Galactokinase OS=Arabidop yes no 0.993 1.0 0.723 0.0
Q54DN6501 Galactokinase OS=Dictyost yes no 0.909 0.906 0.380 2e-88
Q5XIG6458 N-acetylgalactosamine kin yes no 0.849 0.925 0.407 3e-86
Q68FH4458 N-acetylgalactosamine kin yes no 0.853 0.930 0.397 1e-84
Q01415458 N-acetylgalactosamine kin yes no 0.859 0.936 0.408 3e-82
Q5R6J8458 N-acetylgalactosamine kin yes no 0.859 0.936 0.406 6e-82
P04385528 Galactokinase OS=Saccharo yes no 0.891 0.842 0.348 2e-62
Q9HDU2519 Galactokinase OS=Schizosa yes no 0.957 0.921 0.323 2e-60
O42821504 Galactokinase OS=Candida N/A no 0.903 0.894 0.346 1e-58
P09608503 Galactokinase OS=Kluyvero yes no 0.905 0.898 0.328 3e-58
>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2 Back     alignment and function desciption
 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/499 (72%), Positives = 425/499 (85%), Gaps = 3/499 (0%)

Query: 1   MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLI 60
           MA+ EE+ VP F SL+ VYGEG  L+EA +RFD L + F  VF   P ++AR PGRVNLI
Sbjct: 1   MAKPEEVSVPIFTSLEPVYGEGSLLQEATQRFDVLKANFNDVFGASPQLFARSPGRVNLI 60

Query: 61  GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120
           GEHIDYEGYSVLPMAIRQDTI+AIRK    E +K L+IANV+DKY MCTYPA+PDQEID+
Sbjct: 61  GEHIDYEGYSVLPMAIRQDTIIAIRKC---EDQKQLRIANVNDKYTMCTYPADPDQEIDL 117

Query: 121 KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVA 180
           K+H+WGHYFIC YK F+EY K+KG+++G PVGLD+LVDG VPTGSGLSSS AFVCS+T+A
Sbjct: 118 KNHKWGHYFICAYKGFHEYAKSKGVNLGSPVGLDVLVDGIVPTGSGLSSSAAFVCSATIA 177

Query: 181 LMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240
           +MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+GFAELIDFNP+R TDV+L
Sbjct: 178 IMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFNPVRATDVKL 237

Query: 241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300
           P GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KLGM+P+EAISKVKTLSDV
Sbjct: 238 PDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAISKVKTLSDV 297

Query: 301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 360
           EGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL SI  N  +SL VLNAA 
Sbjct: 298 EGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPTSLAVLNAAT 357

Query: 361 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420
            +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSVLYECSCPEL
Sbjct: 358 HFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPEL 417

Query: 421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480
           EELV VC+ NGALGARLTGAGWGGC VALVKE   +QFI  +KE++Y+ R+++GV+   D
Sbjct: 418 EELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFIPAVKEKYYKKRVEKGVVKKED 477

Query: 481 LGLYVFASKPSSGAAKFKF 499
           + LY+FASKPSSGAA F  
Sbjct: 478 MELYLFASKPSSGAAIFNL 496
Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6
>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1 Back     alignment and function description
>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1 Back     alignment and function description
>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1 Back     alignment and function description
>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4 Back     alignment and function description
>sp|Q9HDU2|GAL1_SCHPO Galactokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gal1 PE=3 SV=1 Back     alignment and function description
>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1 Back     alignment and function description
>sp|P09608|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
255556438499 galactokinase, putative [Ricinus communi 1.0 1.0 0.789 0.0
225432012499 PREDICTED: galactokinase [Vitis vinifera 1.0 1.0 0.791 0.0
224108774496 predicted protein [Populus trichocarpa] 0.993 1.0 0.787 0.0
224101523496 predicted protein [Populus trichocarpa] 0.993 1.0 0.783 0.0
209978716500 galactokinase [Cucumis melo] 1.0 0.998 0.771 0.0
449516960499 PREDICTED: galactokinase-like [Cucumis s 1.0 1.0 0.771 0.0
356565073497 PREDICTED: galactokinase-like [Glycine m 0.993 0.997 0.782 0.0
356521747497 PREDICTED: galactokinase-like [Glycine m 0.993 0.997 0.78 0.0
84468320496 putative galactose kinase [Trifolium pra 0.993 1.0 0.765 0.0
357479039497 Galactokinase [Medicago truncatula] gi|3 0.993 0.997 0.754 0.0
>gi|255556438|ref|XP_002519253.1| galactokinase, putative [Ricinus communis] gi|223541568|gb|EEF43117.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/499 (78%), Positives = 449/499 (89%)

Query: 1   MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLI 60
           MA+HEELPVP + SL+ VYG+G QLEEA+ RFD L SKF++VF  PPDV+AR PGRVNLI
Sbjct: 1   MAKHEELPVPLYSSLEPVYGDGSQLEEAQLRFDKLKSKFLEVFGHPPDVFARSPGRVNLI 60

Query: 61  GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120
           GEHIDYEGYSVLPMAIRQDTI+ IRKHD+ E +KVL+IANV+DKY +CTYPA+PDQEID+
Sbjct: 61  GEHIDYEGYSVLPMAIRQDTIIGIRKHDAAEGQKVLRIANVNDKYALCTYPADPDQEIDL 120

Query: 121 KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVA 180
           K+H+WGHYFICGYK FYE+ K KG+DVG  VGLD++VDG VPTGSGLSSS AFVCS+T+A
Sbjct: 121 KNHRWGHYFICGYKGFYEFAKTKGVDVGALVGLDVIVDGIVPTGSGLSSSAAFVCSATIA 180

Query: 181 LMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240
           +MAAF V  PKKEIAQLTCECE+ IGTQSGGMDQAIS+MA++GFAELIDFNPIR TDVQL
Sbjct: 181 IMAAFNVNFPKKEIAQLTCECERHIGTQSGGMDQAISVMAQTGFAELIDFNPIRATDVQL 240

Query: 241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300
           PAGGTFV+AHSLAES KA+TAA+NYNNRVVECRL AI+L +KLGMKPQ+AI KVKTLSDV
Sbjct: 241 PAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAILLGVKLGMKPQDAILKVKTLSDV 300

Query: 301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 360
           EGLCV+FA    S+DP  AVKEFL++EPY+A +IEKITEE L+SIF+NS +SLDVL AAK
Sbjct: 301 EGLCVSFAGTRDSADPAVAVKEFLKEEPYSAEEIEKITEEDLSSIFSNSPTSLDVLKAAK 360

Query: 361 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420
            +KLHQRAAHVYSEAKRVHAFKDTVSS LS+EDKLKKLGDLMN+SH+SCS+LYECSCPEL
Sbjct: 361 HFKLHQRAAHVYSEAKRVHAFKDTVSSKLSDEDKLKKLGDLMNESHYSCSILYECSCPEL 420

Query: 421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480
           EELV VCR +GALGARLTGAGWGGC VALVKE+I  QFILNLKE+F+QSRID+GVI  +D
Sbjct: 421 EELVKVCREHGALGARLTGAGWGGCAVALVKEAIVPQFILNLKEKFFQSRIDKGVIKKSD 480

Query: 481 LGLYVFASKPSSGAAKFKF 499
           LGLYVFASKPSSGAA FKF
Sbjct: 481 LGLYVFASKPSSGAAIFKF 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432012|ref|XP_002279647.1| PREDICTED: galactokinase [Vitis vinifera] gi|296083222|emb|CBI22858.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108774|ref|XP_002314964.1| predicted protein [Populus trichocarpa] gi|222864004|gb|EEF01135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224101523|ref|XP_002312315.1| predicted protein [Populus trichocarpa] gi|222852135|gb|EEE89682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|209978716|gb|ACJ04703.1| galactokinase [Cucumis melo] Back     alignment and taxonomy information
>gi|449516960|ref|XP_004165514.1| PREDICTED: galactokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565073|ref|XP_003550769.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356521747|ref|XP_003529513.1| PREDICTED: galactokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|84468320|dbj|BAE71243.1| putative galactose kinase [Trifolium pratense] Back     alignment and taxonomy information
>gi|357479039|ref|XP_003609805.1| Galactokinase [Medicago truncatula] gi|355510860|gb|AES92002.1| Galactokinase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query499
TAIR|locus:2084344496 GALK [Arabidopsis thaliana (ta 0.989 0.995 0.726 1.3e-196
DICTYBASE|DDB_G0292112501 galK "galactokinase" [Dictyost 0.903 0.900 0.391 2.4e-83
UNIPROTKB|F1P1D1461 GALK2 "Uncharacterized protein 0.865 0.937 0.416 1e-82
RGD|1308691458 Galk2 "galactokinase 2" [Rattu 0.839 0.914 0.415 2.5e-81
UNIPROTKB|F1MFK7447 GALK2 "Uncharacterized protein 0.831 0.928 0.414 1.1e-80
ZFIN|ZDB-GENE-041114-143457 galk2 "galactokinase 2" [Danio 0.857 0.936 0.403 1.1e-80
UNIPROTKB|E2RDA6458 GALK2 "Uncharacterized protein 0.837 0.912 0.417 2.2e-80
UNIPROTKB|F1SQG6458 GALK2 "Uncharacterized protein 0.829 0.903 0.415 4.7e-80
MGI|MGI:1917226458 Galk2 "galactokinase 2" [Mus m 0.843 0.919 0.402 7.6e-80
UNIPROTKB|Q01415458 GALK2 "N-acetylgalactosamine k 0.829 0.903 0.415 3e-78
TAIR|locus:2084344 GALK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 361/497 (72%), Positives = 425/497 (85%)

Query:     1 MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLI 60
             MA+ EE+ VP F SL+ VYGEG  L+EA +RFD L + F  VF   P ++AR PGRVNLI
Sbjct:     1 MAKPEEVSVPIFTSLEPVYGEGSLLQEATQRFDVLKANFNDVFGASPQLFARSPGRVNLI 60

Query:    61 GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120
             GEHIDYEGYSVLPMAIRQDTI+AIRK    E +K L+IANV+DKY MCTYPA+PDQEID+
Sbjct:    61 GEHIDYEGYSVLPMAIRQDTIIAIRKC---EDQKQLRIANVNDKYTMCTYPADPDQEIDL 117

Query:   121 KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVA 180
             K+H+WGHYFIC YK F+EY K+KG+++G PVGLD+LVDG VPTGSGLSSS AFVCS+T+A
Sbjct:   118 KNHKWGHYFICAYKGFHEYAKSKGVNLGSPVGLDVLVDGIVPTGSGLSSSAAFVCSATIA 177

Query:   181 LMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240
             +MA FG    KKE+AQLTCECE+ IGTQSGGMDQAISIMAK+GFAELIDFNP+R TDV+L
Sbjct:   178 IMAVFGHNFEKKELAQLTCECERHIGTQSGGMDQAISIMAKTGFAELIDFNPVRATDVKL 237

Query:   241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300
             P GG+FV+AHSLAES KA+TAA NYNNRVVECRL +I+L +KLGM+P+EAISKVKTLSDV
Sbjct:   238 PDGGSFVIAHSLAESQKAVTAAKNYNNRVVECRLASIILGVKLGMEPKEAISKVKTLSDV 297

Query:   301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 360
             EGLCV+FA   GSSDP+ AVKE+L++EPYTA +IEKI EEKL SI  N  +SL VLNAA 
Sbjct:   298 EGLCVSFAGDRGSSDPLLAVKEYLKEEPYTAEEIEKILEEKLPSIVNNDPTSLAVLNAAT 357

Query:   361 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420
              +KLHQRAAHVYSEA+RVH FKDTV+SNLS+E+KLKKLGDLMN+SH+SCSVLYECSCPEL
Sbjct:   358 HFKLHQRAAHVYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPEL 417

Query:   421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480
             EELV VC+ NGALGARLTGAGWGGC VALVKE   +QFI  +KE++Y+ R+++GV+   D
Sbjct:   418 EELVQVCKENGALGARLTGAGWGGCAVALVKEFDVTQFIPAVKEKYYKKRVEKGVVKKED 477

Query:   481 LGLYVFASKPSSGAAKF 497
             + LY+FASKPSSGAA F
Sbjct:   478 MELYLFASKPSSGAAIF 494
GO:0004335 "galactokinase activity" evidence=IEA;IGI;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0292112 galK "galactokinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-143 galk2 "galactokinase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q01415 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P09608GAL1_KLULA2, ., 7, ., 1, ., 60.32870.90580.8986yesno
Q68FH4GALK2_MOUSE2, ., 7, ., 1, ., 1, 5, 70.39700.85370.9301yesno
Q01415GALK2_HUMAN2, ., 7, ., 1, ., 1, 5, 70.40850.85970.9366yesno
Q5R6J8GALK2_PONAB2, ., 7, ., 1, ., 1, 5, 70.40630.85970.9366yesno
Q9SEE5GALK1_ARATH2, ., 7, ., 1, ., 60.72340.99391.0yesno
Q9HDU2GAL1_SCHPO2, ., 7, ., 1, ., 60.32360.95790.9210yesno
P04385GAL1_YEAST2, ., 7, ., 1, ., 60.34830.89170.8428yesno
Q54DN6GALK_DICDI2, ., 7, ., 1, ., 60.38080.90980.9061yesno
Q5XIG6GALK2_RAT2, ., 7, ., 1, ., 1, 5, 70.40740.84960.9257yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.60.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
PLN02521497 PLN02521, PLN02521, galactokinase 0.0
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 9e-81
TIGR00131386 TIGR00131, gal_kin, galactokinase 2e-75
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 1e-49
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 1e-42
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 4e-26
pfam1050952 pfam10509, GalKase_gal_bdg, Galactokinase galactos 1e-22
PLN02865423 PLN02865, PLN02865, galactokinase 2e-18
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 2e-16
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 4e-16
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 7e-15
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 4e-13
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 1e-12
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 2e-12
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 4e-12
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 6e-12
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 2e-11
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 3e-11
PTZ00290468 PTZ00290, PTZ00290, galactokinase; Provisional 3e-11
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 1e-09
PTZ00290468 PTZ00290, PTZ00290, galactokinase; Provisional 9e-09
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 9e-06
COG4542293 COG4542, PduX, Protein involved in propanediol uti 1e-05
COG1685278 COG1685, COG1685, Archaeal shikimate kinase [Amino 6e-04
COG2605333 COG2605, COG2605, Predicted kinase related to gala 0.002
PLN02677387 PLN02677, PLN02677, mevalonate kinase 0.003
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information 
 Score =  915 bits (2367), Expect = 0.0
 Identities = 367/499 (73%), Positives = 428/499 (85%), Gaps = 3/499 (0%)

Query: 1   MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLI 60
           MA+HEE PVP F SL+ VYG+G  LEEA  R+  L + F++V+   PD++AR PGRVNLI
Sbjct: 1   MAKHEEEPVPVFSSLEPVYGDGSLLEEARLRYARLKAAFVEVYGAKPDLFARSPGRVNLI 60

Query: 61  GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120
           GEHIDYEGYSVLPMAIRQDTIVAIR+    E  K L+IANV+DKY  CT+PA+PDQE+D+
Sbjct: 61  GEHIDYEGYSVLPMAIRQDTIVAIRRA---EGSKKLRIANVNDKYTTCTFPADPDQEVDL 117

Query: 121 KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVA 180
            +H+WG+YFICGYK  +E++K+KG+DVGPPVGLD++VDGTVPTGSGLSSS A VCS+ +A
Sbjct: 118 ANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIA 177

Query: 181 LMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240
           +MAA G+   KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G A+LIDFNP+R TDVQL
Sbjct: 178 IMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQL 237

Query: 241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300
           PAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KLGM  +EAISKVKTLSDV
Sbjct: 238 PAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDV 297

Query: 301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 360
           EGLCV+FA  +GSSDP  AVKE L + PYTA +IE+I  E LTSIF NS +SL VL AAK
Sbjct: 298 EGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAK 357

Query: 361 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420
            +KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN+SH+SCSVLYECSCPEL
Sbjct: 358 HFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPEL 417

Query: 421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480
           EELV VCR+NGALGARLTGAGWGGC VALVKE+I  QFIL LKE+FY+SRI++GVI   D
Sbjct: 418 EELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEED 477

Query: 481 LGLYVFASKPSSGAAKFKF 499
           LGLYVFASKPSSGAA  KF
Sbjct: 478 LGLYVFASKPSSGAAILKF 496

Length = 497
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|204502 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding signature Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 499
PLN02521497 galactokinase 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PLN02865423 galactokinase 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK05322387 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 100.0
PRK00555363 galactokinase; Provisional 100.0
KOG0631489 consensus Galactokinase [Carbohydrate transport an 100.0
PRK03817351 galactokinase; Provisional 100.0
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 100.0
PLN02677387 mevalonate kinase 100.0
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 100.0
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 100.0
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 100.0
PTZ00298328 mevalonate kinase; Provisional 100.0
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 100.0
PRK03926302 mevalonate kinase; Provisional 100.0
COG2605333 Predicted kinase related to galactokinase and meva 100.0
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.97
PLN02451370 homoserine kinase 99.96
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.96
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.95
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
PRK01212301 homoserine kinase; Provisional 99.95
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.94
PTZ00299336 homoserine kinase; Provisional 99.94
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.93
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.91
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.9
PRK01123282 shikimate kinase; Provisional 99.89
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.86
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.86
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.85
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.85
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.84
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.84
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.84
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.84
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.81
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.8
COG1907312 Predicted archaeal sugar kinases [General function 99.72
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.71
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.7
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.67
PF1050952 GalKase_gal_bdg: Galactokinase galactose-binding s 99.6
PRK05905258 hypothetical protein; Provisional 99.56
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.56
KOG4519459 consensus Phosphomevalonate kinase [Lipid transpor 99.51
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 99.51
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 99.49
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.49
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 99.4
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.39
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.34
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.3
COG4542293 PduX Protein involved in propanediol utilization, 98.9
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 98.87
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 98.77
PLN02407343 diphosphomevalonate decarboxylase 98.75
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 98.64
>PLN02521 galactokinase Back     alignment and domain information 
Probab=100.00  E-value=2.6e-83  Score=677.91  Aligned_cols=496  Identities=74%  Similarity=1.191  Sum_probs=427.1

Q ss_pred             CCCCCCcCcchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccce
Q 010850            1 MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDT   80 (499)
Q Consensus         1 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~   80 (499)
                      |+.|.+.|||+|++|.+||++...++++..|++++...|.+.||.+|+++++|||||+|+|||+||+|++||++||++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~F~~~fg~~p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~   80 (497)
T PLN02521          1 MAKHEEEPVPVFSSLEPVYGDGSLLEEARLRYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDT   80 (497)
T ss_pred             CCCCCCCCcceechhHHhcCCcchhHHHHHHHHHHHHHHHHHHCCCCCEEEECCceEEEeccceeecCCeEEEEEEcCcE
Confidence            77899999999999999999877778889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEec
Q 010850           81 IVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGT  160 (499)
Q Consensus        81 ~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~  160 (499)
                      ++.++++++   ...+++.+.+..+....++++.....+.....|.||+.+++++++..+.+.+...+.+.|+++.|.|+
T Consensus        81 ~v~~~~~~~---~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~  157 (497)
T PLN02521         81 IVAIRRAEG---SKKLRIANVNDKYTTCTFPADPDQEVDLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGT  157 (497)
T ss_pred             EEEEEEcCC---CCEEEEEECCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecC
Confidence            999999875   15688877654333234444321111234467999999999999999987765322235999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeec
Q 010850          161 VPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL  240 (499)
Q Consensus       161 iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~  240 (499)
                      ||+++|||||||++||++.|++.+++.++++++++++|+++|+++|++||+|||+++++|+.|+++++||+++.++++++
T Consensus       158 IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~  237 (497)
T PLN02521        158 VPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQL  237 (497)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHH
Q 010850          241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV  320 (499)
Q Consensus       241 p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v  320 (499)
                      |.++.|+|++|++++.|+.+++++||.|+.||+.|+++|+++++++.++....+++|||+.+++..+.+.....++.+.+
T Consensus       238 p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~  317 (497)
T PLN02521        238 PAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAV  317 (497)
T ss_pred             CCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHh
Confidence            99999999999999999999999999999999999999999888765443345789999976554444555556677888


Q ss_pred             HHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010850          321 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD  400 (499)
Q Consensus       321 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~  400 (499)
                      +..+.+.+|+.+++.++++..+++++++..+....+...+++.+++|++|+++|+.||.+++++|+++++.+.++..||+
T Consensus       318 ~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~  397 (497)
T PLN02521        318 KELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGD  397 (497)
T ss_pred             hhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            88888888999999888776666666555544444444667889999999999999999999999986544456999999


Q ss_pred             HHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCC
Q 010850          401 LMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND  480 (499)
Q Consensus       401 lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  480 (499)
                      +|+++|.++|++|+||||++|.|+++|++.|++|+||||||||||+++|++++.++++++.+.+.|+++.+.++.+...+
T Consensus       398 lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~  477 (497)
T PLN02521        398 LMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEED  477 (497)
T ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccC
Confidence            99999999999999999999999999999999999999999999999999998999999999999998764334455556


Q ss_pred             CcceEEEeeCCCceeeccC
Q 010850          481 LGLYVFASKPSSGAAKFKF  499 (499)
Q Consensus       481 ~~~~~~~~~p~~Ga~v~~~  499 (499)
                      +.+.+|+++|++||++++|
T Consensus       478 ~~~~~~~~~p~~Ga~~~~~  496 (497)
T PLN02521        478 LGLYVFASKPSSGAAILKF  496 (497)
T ss_pred             CCCcEEEEecCCCceEeec
Confidence            7889999999999999876

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry [] Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism] Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
2a2d_A478 X-Ray Structure Of Human N-Acetyl Galactosamine Kin 2e-83
2aj4_A548 Crystal Structure Of Saccharomyces Cerevisiae Galac 1e-63
3v5r_A505 Crystal Structure Of The Unliganded Form Of Gal3p L 7e-59
3v2u_C520 Crystal Structure Of The Yeast Gal Regulon Complex 8e-59
1pie_A419 Crystal Structure Of Lactococcus Lactis Galactokina 2e-23
1wuu_A399 Crystal Structure Of Human Galactokinase Complexed 1e-14
2cz9_A350 Crystal Structure Of Galactokinase From Pyrococcus 2e-10
2cz9_A350 Crystal Structure Of Galactokinase From Pyrococcus 1e-08
2hfu_A332 Crystal Structure Of L. Major Mevalonate Kinase In 4e-10
1s4e_A352 Pyrococcus Furiosus Galactokinase In Complex With G 2e-09
2hfs_A332 Crystal Structure Of L. Major Mevalonate Kinase Len 2e-09
1vis_A324 Crystal Structure Of Mevalonate Kinase Length = 324 3e-06
1vis_A324 Crystal Structure Of Mevalonate Kinase Length = 324 2e-04
1kkh_A317 Crystal Structure Of The Methanococcus Jannaschii M 3e-06
1kkh_A317 Crystal Structure Of The Methanococcus Jannaschii M 2e-04
2x7i_A308 Crystal Structure Of Mevalonate Kinase From Methici 3e-05
2oi2_A292 Streptococcus Pneumoniae Mevalonate Kinase In Compl 8e-04
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 271/470 (57%), Gaps = 41/470 (8%)
Query: 31  RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSK 90
           R   L   F   F   P  Y R PGRVN+IGEHIDY GYSVLPMA+ QD ++A+    + 
Sbjct: 38  RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTY 97
Query: 91  EAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPP 150
                L++AN +  Y   +  A  + +ID     W +YF+CG K   E+     L     
Sbjct: 98  ----ALQLANTNPLYPDFSTSAN-NIQIDKTKPLWHNYFLCGLKGIQEHFGLSNL----- 147
Query: 151 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSG 210
            G++ LVDG +P  SGLSSS+A VC + +  +   G  + K E+A++  + E++IGT+ G
Sbjct: 148 TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGG 207
Query: 211 GMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVV 270
           GMDQ+IS +A+ G A+LI+F+P+R TDV+LP+G  FV+A+S  E  KA  A S++N RV+
Sbjct: 208 GMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVM 265
Query: 271 ECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEP 328
           ECRL A +LA    ++      KV  L +V+        K G S  + +   ++ L  EP
Sbjct: 266 ECRLAAKLLAKYKSLQ----WDKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEP 314
Query: 329 YTALDIEKI----TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 384
           Y   +I +      EE  T I   S ++ DVL     +KL+QRA HVYSEA RV  FK  
Sbjct: 315 YNPEEICRCLGISLEELRTQIL--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKI 368
Query: 385 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 444
                + E+ ++ LG+LMN SH SC  +YECSCPEL++LV++CR  GA G+RLTGAGWGG
Sbjct: 369 CEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGG 426
Query: 445 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 494
           C V++V       F+ N+ + +YQ R D  +         +FA+KP  GA
Sbjct: 427 CTVSMVPADKLPSFLANVHKAYYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 Back     alignment and structure
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 Back     alignment and structure
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 Back     alignment and structure
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 Back     alignment and structure
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399 Back     alignment and structure
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 Back     alignment and structure
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 Back     alignment and structure
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 Back     alignment and structure
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 Back     alignment and structure
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase Length = 332 Back     alignment and structure
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase Length = 324 Back     alignment and structure
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase Length = 324 Back     alignment and structure
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Mevalonate Kinase Length = 317 Back     alignment and structure
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Mevalonate Kinase Length = 317 Back     alignment and structure
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin- Resistant Staphylococcus Aureus Mrsa252 Length = 308 Back     alignment and structure
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With Diphosphomevalonate Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query499
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 1e-153
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 1e-138
1pie_A419 Galactokinase; galactose, galactosemia, transferas 5e-89
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 3e-85
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 1e-84
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 1e-35
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 3e-25
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 4e-32
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 1e-23
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 2e-30
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 1e-27
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 1e-24
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-26
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 5e-23
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 5e-24
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 1e-18
3k17_A365 LIN0012 protein; protein structure initiative II(P 7e-18
3k17_A365 LIN0012 protein; protein structure initiative II(P 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 2e-13
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 6e-10
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
 Score =  445 bits (1146), Expect = e-153
 Identities = 185/494 (37%), Positives = 268/494 (54%), Gaps = 39/494 (7%)

Query: 14  SLKAVYGEGLQLEEA----------ERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEH 63
           S + +Y +G    E+            R   L   F   F   P  Y R PGRVN+IGEH
Sbjct: 11  SSENLYFQGHMATESPATRRVQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEH 70

Query: 64  IDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123
           IDY GYSVLPMA+ QD ++A+    +      L++AN +  Y   +  A  + +ID    
Sbjct: 71  IDYCGYSVLPMAVEQDVLIAVEPVKTY----ALQLANTNPLYPDFSTSAN-NIQIDKTKP 125

Query: 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMA 183
            W +YF+CG K   E+       +    G++ LVDG +P  SGLSSS+A VC + +  + 
Sbjct: 126 LWHNYFLCGLKGIQEH-----FGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLT 180

Query: 184 AFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAG 243
             G  + K E+A++  + E++IGT+ GGMDQ+IS +A+ G A+LI+F+P+R TDV+LP+G
Sbjct: 181 VLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSG 240

Query: 244 GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 303
             FV+A+S  E  KA  A S++N RV+ECRL A +LA    ++      KV  L +V+  
Sbjct: 241 AVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQWD----KVLRLEEVQAK 294

Query: 304 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 363
                      + +   ++ L  EPY   +I +     L  +     S          +K
Sbjct: 295 -----LGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQD--VLIFK 347

Query: 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 423
           L+QRA HVYSEA RV  FK       + E+ ++ LG+LMN SH SC  +YECSCPEL++L
Sbjct: 348 LYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQL 405

Query: 424 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGL 483
           V++CR  GA G+RLTGAGWGGC V++V       F+ N+ + +YQ    R   +      
Sbjct: 406 VDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQ----RSDGSLAPEKQ 461

Query: 484 YVFASKPSSGAAKF 497
            +FA+KP  GA   
Sbjct: 462 SLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 100.0
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 100.0
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 100.0
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 100.0
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 100.0
3k17_A365 LIN0012 protein; protein structure initiative II(P 100.0
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 100.0
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 100.0
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 100.0
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 100.0
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 100.0
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 100.0
1h72_C296 HK, homoserine kinase; transferase, threonine bios 100.0
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.95
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.94
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.94
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.92
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.91
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 99.86
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 99.78
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 99.68
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 99.58
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-79  Score=653.78  Aligned_cols=474  Identities=32%  Similarity=0.537  Sum_probs=392.4

Q ss_pred             cCcchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEE
Q 010850            7 LPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRK   86 (499)
Q Consensus         7 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~   86 (499)
                      .|||++++|.+ |+++.    +++||+++.+.|.+.||.+|.++++|||||+|+|||+||+||+||++||++++++++++
T Consensus         3 ~~vp~~~~~~~-~~~~~----~~~R~~~l~~~F~~~fg~~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~   77 (520)
T 3v2u_C            3 TNVPIFSSPVR-DLPRS----FEQKHLAVVDAFFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKI   77 (520)
T ss_dssp             CBCCEESCC----CCHH----HHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEE
T ss_pred             CCCceeccccc-cCcHH----HHHHHHHHHHHHHHHhCCCCCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEe
Confidence            47899999999 98864    57899999999999999999999999999999999999999999999999999999999


Q ss_pred             C--CCcCCcceEEEEeCCCCCCceeecCCCC---cccccccCCccchHHHHHHHHHHHHHHc------CCCCCCCCCeEE
Q 010850           87 H--DSKEAEKVLKIANVSDKYNMCTYPAEPD---QEIDMKHHQWGHYFICGYKAFYEYVKAK------GLDVGPPVGLDI  155 (499)
Q Consensus        87 ~--~~~~~~~~i~i~s~~~~~~~~~~~l~~~---~~~~~~~~~~~~~v~~~i~~v~~~l~~~------~~~~~~~~g~~i  155 (499)
                      +  ++    ..++|.|.+.++...+|+++..   ..++...+.|.||++++++++..++++.      +..   ..||++
T Consensus        78 ~~~~d----~~i~i~S~~~~~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~---~~G~~i  150 (520)
T 3v2u_C           78 LDEKN----PSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTP---LVGAQI  150 (520)
T ss_dssp             CCCSS----CEEEEEESSTTSCCEEEECCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSC---CCCEEE
T ss_pred             ccCCC----CEEEEEECCCCCCceEEEeccCccccccCcccccHHHHHHHHHHHHHHHHHhhcccccccCC---CCceEE
Confidence            7  55    7899998765554456666311   1233345789999999888888888763      233   379999


Q ss_pred             EEEecCCCCCCCCchHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCC
Q 010850          156 LVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNP  232 (499)
Q Consensus       156 ~i~s~iP~g~GLGSSaA~~va~~~al~~~~---~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~  232 (499)
                      .|.|+||+|+||  |||++||++.|++.++   ++++++.+++++|+++|+++|.+||+|||+++++|+.|+++++||++
T Consensus       151 ~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~  228 (520)
T 3v2u_C          151 FCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRP  228 (520)
T ss_dssp             EEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSS
T ss_pred             EEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCC
Confidence            999999999999  9999999999999998   77899999999999999999999999999999999999999999999


Q ss_pred             -CeeEEeecCC----CcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch----hhhhccccchhhhhh
Q 010850          233 -IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKTLSDVEGL  303 (499)
Q Consensus       233 -~~~~~i~~p~----~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~----~~~~~~~~L~~v~~~  303 (499)
                       +.++++++|+    ++.|+|++|++.++|+.+++++||.|+.||+.|+++|++++|+...    +......+||++.+.
T Consensus       229 ~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~  308 (520)
T 3v2u_C          229 KLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDA  308 (520)
T ss_dssp             SCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHH
T ss_pred             CceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHh
Confidence             9999999987    7999999999998899999999999999999999999999886521    111123478888653


Q ss_pred             hh--------hhhcc-----CCCCCchhHHHHhhhc--CCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhH
Q 010850          304 CV--------AFACK-----NGSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA  368 (499)
Q Consensus       304 ~~--------~~~~~-----~~~~~~~~~v~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  368 (499)
                      ..        .|.++     ....++.+.+.+.+.+  .+|+.+++.+.++.+.+++.++++..+++  ..+++.+++|+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~~~l~~RA  386 (520)
T 3v2u_C          309 YYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQVLKLYQRA  386 (520)
T ss_dssp             HHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESCBCHHHHH
T ss_pred             hhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--ccccHHHHHHH
Confidence            21        11110     0112244445555554  37898999988886556665555554443  23456789999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceE
Q 010850          369 AHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCV  446 (499)
Q Consensus       369 ~~~i~E~~rv~~~~~al~~~~--~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~v  446 (499)
                      +|+++|+.||.+++++|.+++  ++.+|++.||+||+++|.+||++|+||||++|.|+++|++.|++|+||||||||||+
T Consensus       387 ~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~  466 (520)
T 3v2u_C          387 KHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCT  466 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceE
Confidence            999999999999999999863  233579999999999999999999999999999999999999999999999999999


Q ss_pred             EEEE---eCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 010850          447 VALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK  498 (499)
Q Consensus       447 iaL~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~  498 (499)
                      |+|+   +++.+++++++|.+.|+++++  +.+..+++.+.+|+|+|++||+|+.
T Consensus       467 iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~  519 (520)
T 3v2u_C          467 IHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE  519 (520)
T ss_dssp             EEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence            9999   778999999999999998875  3344445578999999999999974
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 499
d1wuua1215 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi 5e-45
d1piea1205 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact 2e-39
d1s4ea1176 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ 3e-37
d1kkha1180 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met 1e-31
d1kvka1225 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus 9e-28
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 2e-22
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 3e-22
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 4e-20
d1k47a1194 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) 3e-17
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 6e-16
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 4e-12
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 7e-06
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  155 bits (391), Expect = 5e-45
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 10/220 (4%)

Query: 23  LQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIV 82
           L+  +           F + F   P++    PGRVNLIGEH DY    VLPMA+   T++
Sbjct: 3   LRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 62

Query: 83  AIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKA 142
                       +       +   +        + ++    +W +Y     + +      
Sbjct: 63  VGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAA--- 119

Query: 143 KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202
                 P  G   +V  +VP G GLSSS +   ++   L             AQ+  + E
Sbjct: 120 ------PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAE 173

Query: 203 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP 241
             F G   G MDQ IS+M + G A LID   + T+ V L 
Sbjct: 174 HSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205 Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176 Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180 Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225 Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query499
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.97
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.94
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.93
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.85
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.78
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.65
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.56
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.16
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.02
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.93
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 97.46
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 96.63
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 93.91
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=9.1e-38  Score=294.28  Aligned_cols=198  Identities=30%  Similarity=0.474  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHHhCCCCC-eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCC-CCCce
Q 010850           31 RFDNLNSKFIQVFAQPPD-VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSD-KYNMC  108 (499)
Q Consensus        31 ~~~~~~~~f~~~f~~~~~-~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~-~~~~~  108 (499)
                      ..+.+.+.|++.||..|+ .+++|||||+|+|||+||+|++||++||++++++.++++.+    .++++.+.+. +....
T Consensus         2 ~~~~~~~~f~~~f~~~~~~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d----~~i~i~s~~~~~~~~~   77 (205)
T d1piea1           2 VLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED----KKVKLYSENFPKLGVI   77 (205)
T ss_dssp             HHHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSS----SEEEEEETTCGGGCCE
T ss_pred             HHHHHHHHHHHHhCCCcceeEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCC----CeeeeecCCCCcccee
Confidence            457889999999999887 47899999999999999999999999999999999999998    8899988653 11112


Q ss_pred             eecCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCC
Q 010850          109 TYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVE  188 (499)
Q Consensus       109 ~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~  188 (499)
                      +++.+..  .......|.+|+.    +++..+.+.+...  ..||++.|.|+||+|+|||||||++||++.|++++++++
T Consensus        78 ~~~~~~~--~~~~~~~~~~~~~----~~i~~l~~~~~~~--~~G~~i~i~s~iP~gsGLgSSAAl~va~~~al~~~~~~~  149 (205)
T d1piea1          78 EFDLDEV--EKKDGELWSNYVK----GMIVMLKGAGYEI--DKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLN  149 (205)
T ss_dssp             EEETTCT--TSCCTTCTHHHHH----HHHHHHHHTTCCC--CSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             ecccccc--ccccccchhHHHH----HHHHHHHHhCCcc--ccCeEEEEecCCccccccCccHHHHHHHHHHHHHHhCCC
Confidence            2332211  1134577999884    5666677666542  479999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeec
Q 010850          189 VPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL  240 (499)
Q Consensus       189 l~~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~  240 (499)
                      +++.+++++|+++|+ ++|.+||.|||+++++||.|+++++||++.+++.+|+
T Consensus       150 ~~~~~ia~~a~~~E~~~~g~~~G~~Dq~as~~g~~~~~~~~d~~~~~~~~ip~  202 (205)
T d1piea1         150 VPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV  202 (205)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHhcCCCeEEEEECCCCcEEecCc
Confidence            999999999999998 7899999999999999999999999999988888765
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure